Query 026994
Match_columns 229
No_of_seqs 203 out of 1164
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 04:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026994.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026994hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b45a1 f.51.1.1 (A:91-270) Gl 98.8 1.4E-08 1E-12 80.5 9.8 106 1-122 71-178 (180)
2 d2nr9a1 f.51.1.1 (A:4-192) Glp 98.8 3.4E-09 2.5E-13 85.0 5.7 109 1-124 73-182 (189)
3 d1q90m_ f.23.25.1 (M:) PetM su 21.0 33 0.0024 18.0 2.2 17 105-121 13-29 (34)
4 d1ppjd2 f.23.11.1 (D:196-241) 19.7 26 0.0019 20.1 1.8 13 191-203 2-14 (46)
5 d3cx5d2 f.23.11.1 (D:261-307) 17.2 33 0.0024 19.8 1.8 13 191-203 2-14 (47)
6 d2nr9a1 f.51.1.1 (A:4-192) Glp 16.7 42 0.0031 24.2 2.9 27 99-125 161-187 (189)
7 d1q90r_ f.23.12.1 (R:) ISP sub 16.4 88 0.0064 17.1 4.1 25 9-33 7-31 (39)
8 d1otsa_ f.20.1.1 (A:) Clc chlo 15.9 2.5E+02 0.018 22.6 8.2 31 6-36 11-41 (444)
9 d1rw6a_ a.47.4.1 (A:) CAPPD, a 15.7 46 0.0034 24.9 2.9 24 187-210 145-171 (192)
10 d2e74d2 f.23.12.1 (D:12-45) IS 12.5 1E+02 0.0075 16.0 4.1 31 9-39 2-32 (34)
No 1
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=98.78 E-value=1.4e-08 Score=80.53 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=68.0
Q ss_pred ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEEeeech
Q 026994 1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKA 80 (229)
Q Consensus 1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l~~ir~ 80 (229)
+|+.+|+.||+++++.+|+++++++++...+. .. ....|+||++.|+++......+...........
T Consensus 71 ~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~-------~~------~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~ 137 (180)
T d3b45a1 71 LGGAVEKRLGSGKLIVITLISALLSGYVQQKF-------SG------PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQR 137 (180)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-------HC------SCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCH
T ss_pred HHHHHHHhccchhheeeeeHHHHHHHHHHHHH-------hc------cccccccchHHHHHHHHHHHhhhcchhHHhhHH
Confidence 48999999999999999999999999986431 11 245699999999987776665544432212211
Q ss_pred hHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHh
Q 026994 81 KWLPSLMLLLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYL 122 (229)
Q Consensus 81 k~lp~~~l~~~~~~~~~~--~~~~~~~~~~l~G~l~gw~YlRf~ 122 (229)
.......+ .+...+.. ..+..+.+ |++|+++|+++.-+.
T Consensus 138 ~~~~~~~~--~~~~~~~~~~~~~v~~~a-HlgG~l~G~~~~~~~ 178 (180)
T d3b45a1 138 GLIIFALI--WIVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVD 178 (180)
T ss_dssp HHHHHHHH--HHHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHH
Confidence 11111111 11122221 24456665 999999999886543
No 2
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=98.76 E-value=3.4e-09 Score=85.00 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=67.3
Q ss_pred ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE-eeec
Q 026994 1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL-LKIK 79 (229)
Q Consensus 1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l-~~ir 79 (229)
+|+.+|+.||+++++.+|++++++++++..+ ..+ .+..|+||+++|++.++....|...... .+.+
T Consensus 73 ~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~-------~~~------~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~ 139 (189)
T d2nr9a1 73 FGGMIERTFGSVKLLMLYVVASAITGYVQNY-------VSG------PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEG 139 (189)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------HHC------SCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------cCC------CCcccchHHHHHHHHHHHHHHHHhhhHhccHHH
Confidence 4889999999999999999999999987632 122 3568999999999987776666555433 2333
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhc
Q 026994 80 AKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQK 124 (229)
Q Consensus 80 ~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q~ 124 (229)
......+.+.+..+.. ....+..+.+ |++|+++|.+|.-.++|
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~v~~~a-Hl~G~l~G~~~g~~~~~ 182 (189)
T d2nr9a1 140 FFTMLLVGIALGFISP-LFGVEMGNAA-HISGLIVGLIWGFIDSK 182 (189)
T ss_dssp STTTTTTTTTHHHHSC-SSCCTTCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ccCCChHHHH-HHHHHHHHHHHHHHHHc
Confidence 3222222222221111 1123444554 77777666665544443
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=20.98 E-value=33 Score=17.97 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026994 105 LPTLIFGTYMGWIYLRY 121 (229)
Q Consensus 105 ~~~~l~G~l~gw~YlRf 121 (229)
+.+.+.|..+|++.+|.
T Consensus 13 ig~tl~glaigfvllrv 29 (34)
T d1q90m_ 13 VGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheee
Confidence 44578899999999985
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.69 E-value=26 Score=20.12 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHH
Q 026994 191 EASRRRERGARAL 203 (229)
Q Consensus 191 eaeRRR~~AlkaL 203 (229)
|.|-|+++++|++
T Consensus 2 e~d~RK~mG~Kv~ 14 (46)
T d1ppjd2 2 EHDHRKRMGLKML 14 (46)
T ss_dssp THHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 5678899999986
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.15 E-value=33 Score=19.84 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHH
Q 026994 191 EASRRRERGARAL 203 (229)
Q Consensus 191 eaeRRR~~AlkaL 203 (229)
|.|-|+.+++|++
T Consensus 2 EhDeRK~mg~K~~ 14 (47)
T d3cx5d2 2 EHDERKRLGLKTV 14 (47)
T ss_dssp THHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4567788999987
No 6
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=16.71 E-value=42 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcC
Q 026994 99 AESAAYLPTLIFGTYMGWIYLRYLQKK 125 (229)
Q Consensus 99 ~~~~~~~~~~l~G~l~gw~YlRf~q~~ 125 (229)
.+..+|+.+.+.|++.+|++-|.-||+
T Consensus 161 v~~~aHl~G~l~G~~~g~~~~~~~k~~ 187 (189)
T d2nr9a1 161 MGNAAHISGLIVGLIWGFIDSKLRKNS 187 (189)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 356788888999999999998877753
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.38 E-value=88 Score=17.14 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=15.6
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Q 026994 9 WGSKEFLKFIFIVNFLTSLCIFITA 33 (229)
Q Consensus 9 wGs~efl~f~lv~gi~~~l~~~~~~ 33 (229)
.|.|++.-.+++.++..-....+.-
T Consensus 7 MgrR~~MNLll~G~~~~~~~g~l~p 31 (39)
T d1q90r_ 7 MNKRNIMNLILAGGAGLPITTLALG 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccchhhhhhccc
Confidence 5677887777766655555544433
No 8
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=15.93 E-value=2.5e+02 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=18.4
Q ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026994 6 EPVWGSKEFLKFIFIVNFLTSLCIFITAVAL 36 (229)
Q Consensus 6 E~~wGs~efl~f~lv~gi~~~l~~~~~~~~~ 36 (229)
++..-...++..-+++|+++++...++....
T Consensus 11 ~~~~~~l~~~~la~liGi~~gl~~~~~~~~i 41 (444)
T d1otsa_ 11 ERDKTPLAILFMAAVVGTLVGLAAVAFDKGV 41 (444)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566666677888888776544433
No 9
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.67 E-value=46 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=18.7
Q ss_pred CCchhhhHHHHHHH---HHHHHHHhcc
Q 026994 187 SDPIEASRRRERGA---RALEERLATE 210 (229)
Q Consensus 187 ~~~~eaeRRR~~Al---kaL~eRl~~~ 210 (229)
+||.+|++.|.--| +.+|+|+++.
T Consensus 145 ~dp~~A~~~r~~vl~hL~~Id~r~NqS 171 (192)
T d1rw6a_ 145 VDPKKAAQIRSQVMTHLRVIYERMNQS 171 (192)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 47888888777664 8999999854
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.54 E-value=1e+02 Score=16.00 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=0.0
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026994 9 WGSKEFLKFIFIVNFLTSLCIFITAVALYYI 39 (229)
Q Consensus 9 wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i 39 (229)
+|.++|.-...+..+-+..+..+..++-|++
T Consensus 2 mgrrqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 2 MGRRQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHhhHHHHHHhhhhhHHhhcC
Done!