BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026995
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/219 (82%), Positives = 195/219 (89%)
Query: 11 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 70
S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAM
Sbjct: 14 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAM 73
Query: 71 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 130
LGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+
Sbjct: 74 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 133
Query: 131 LMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 190
LMG VEGYRI +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFG
Sbjct: 134 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
Query: 191 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
FFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 194 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/227 (80%), Positives = 200/227 (88%), Gaps = 2/227 (0%)
Query: 3 RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 62
+TV+S+ S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELE
Sbjct: 8 KTVQSS--SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 65
Query: 63 VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 122
VIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL
Sbjct: 66 VIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 125
Query: 123 AIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGR 182
AIWACQV+LMG VEGYRI +FDPLGLADDP+ FAELKVKE+KNGR
Sbjct: 126 AIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 185
Query: 183 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
LAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW +ATNFVPGK
Sbjct: 186 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/219 (82%), Positives = 194/219 (88%)
Query: 11 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 70
S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAM
Sbjct: 14 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAM 73
Query: 71 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 130
LGALG VFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+
Sbjct: 74 LGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 133
Query: 131 LMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 190
LMG VEGYRI +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFG
Sbjct: 134 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
Query: 191 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
FFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 194 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 117/228 (51%), Gaps = 37/228 (16%)
Query: 15 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 68
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 109
Query: 69 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 126
AMLGA+G + PEIL K G+ E WF+ G I G +Y + ++
Sbjct: 110 AMLGAVGAIAPEILGKAGLIPQETALPWFRTGF-IPPAGTYNYWADS--------YTLFV 160
Query: 127 CQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQ 169
++ LMGF E R + F+PLG D
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 170 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 217
+LK+KE+KNGRLAM ++ G+FVQA+VTG GP +NL DH+ DPV NN
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 27 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 86
E P+YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 87 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXX 145
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 159
Query: 146 XXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 204
AFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 160 KDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 205 NLYDHIADPVANN 217
NL H+ADP NN
Sbjct: 220 NLATHLADPWHNN 232
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 27 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 86
E P+YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 4 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 59
Query: 87 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXX 145
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 60 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 111
Query: 146 XXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 204
AFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 112 KDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 171
Query: 205 NLYDHIADPVANN 217
NL H+ADP NN
Sbjct: 172 NLATHLADPWHNN 184
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 98/200 (49%), Gaps = 32/200 (16%)
Query: 30 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 89
P +L G PGD+G+D GLS+DPE+ N + E++HSRWAMLGA G PE L+K G+
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-L 59
Query: 90 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 139
W+ AG Q + ++ ++V +G+ EG R
Sbjct: 60 NTPSWYTAGEQEY---------------FTDTTTLFIVELVFIGWAEGRRWADILNPGCV 104
Query: 140 -----IXXXXXXXXXXXXXXXXAFDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFV 193
FDPLG P + EL+ KE+KNGRLAM ++ G +
Sbjct: 105 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWF 164
Query: 194 QAIVTGKGPIENLYDHIADP 213
Q I TG GPI+NL+ H+ADP
Sbjct: 165 QHIYTGTGPIDNLFAHLADP 184
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 105/218 (48%), Gaps = 35/218 (16%)
Query: 16 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 75
PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 76 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 135
PE L+K G+ W+ AG Q +Y + ++ ++V +G+
Sbjct: 120 IFIPEFLTKLGI-LNTPSWYTAGEQ-------EYFTD--------TTTLFIVELVFIGWA 163
Query: 136 EGYR---------------IXXXXXXXXXXXXXXXXAFDPLGLAD-DPDQFAELKVKELK 179
EG R FDPLG P + EL+ KE+K
Sbjct: 164 EGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIK 223
Query: 180 NGRLAMFSMFGFFVQAIVTGKGPIENLY-DHIADPVAN 216
NGRLAM ++ G + Q I TG GPI+NL+ H+ADP A
Sbjct: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 38 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKA 97
PGD+G+D GL P + +E E+IH RWAML G + PE L G W KA
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKA 55
Query: 98 GAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX 156
GG YLGNP + ++ I A + + + FVE R
Sbjct: 56 QEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDPEKKKYPGG 110
Query: 157 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADP 213
AFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL H+ADP
Sbjct: 111 AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 168
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 86/180 (47%), Gaps = 32/180 (17%)
Query: 50 ADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDY 109
+DPE+ N + E++HSRWAMLGA G PE L+K G+ W+ AG Q +Y
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-LNTPSWYTAGEQ-------EY 52
Query: 110 LGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------IXXXXXXXXXXXXXX 154
+ ++ ++V +G+ EG R
Sbjct: 53 FTDTT--------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG 104
Query: 155 XXAFDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 213
FDPLG P + EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct: 105 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 164
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 37 FPGDYGWDTAGL-SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 86
+PG +D G SA P+ + R E+ + R AML +G F I + G
Sbjct: 102 YPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 152
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 105/247 (42%), Gaps = 59/247 (23%)
Query: 14 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN---- 58
+ DRP + + P YL G GDYG+D GL E AKN
Sbjct: 7 FSTDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGD 64
Query: 59 ----------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFG 90
RE E+IH RWAML LG + E L+ G+
Sbjct: 65 IIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--GI--- 119
Query: 91 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXX 150
W AG EG YLG P ++ IW +V+++G++E R
Sbjct: 120 --TWQDAGKVELIEGS-SYLGQPLPFSMTTL--IW-IEVLVIGYIEFQR---NAELDTEK 170
Query: 151 XXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 210
FDPLGLA DP++ L++ E+K+ RLAM GF VQA VTGKGP+ N H+
Sbjct: 171 RLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHL 230
Query: 211 ADPVANN 217
+DP+
Sbjct: 231 SDPLHTT 237
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 29 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 88
+P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI- 120
Query: 89 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXX 143
W+ AG + + + + L + IL+ + + G V I
Sbjct: 121 INVPKWYAAGKEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 174
Query: 144 XXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 203
F+PL A E K KE+ NGRL M + GF +Q VTGKGP
Sbjct: 175 YSLPAGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229
Query: 204 ENLYDHIADPVANN 217
+NL HI+DP N
Sbjct: 230 DNLLQHISDPWHNT 243
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 80/169 (47%), Gaps = 28/169 (16%)
Query: 62 EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQ 119
E+I+ R+AMLGA G + PEIL K G+ E WF+ G I G Y +
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWADN------ 58
Query: 120 SILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-----------------FDPLG 162
++ ++ LMGF E R+ F+PLG
Sbjct: 59 --YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLG 116
Query: 163 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIA 211
D ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+A
Sbjct: 117 FGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 34/181 (18%)
Query: 50 ADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQI 101
+DPE F + R L EVI+ R+AMLGA+G + PE L K G+ E WF+ G I
Sbjct: 1 SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-I 59
Query: 102 FSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXX 144
G +Y + ++ ++ LMGF E R +
Sbjct: 60 PPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGF 111
Query: 145 XXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 204
F+PLG D ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +
Sbjct: 112 GGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQ 171
Query: 205 N 205
N
Sbjct: 172 N 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 52 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 111
PE + E+++ RWAMLG G + PE+ + G+ W+ AG + +Y
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE-------EYFA 52
Query: 112 NPNLIHAQSILAIWACQVVLMGFVEGYR--------------IXXXXXXXXXXXXXXXXA 157
+ + ++ + +L +VE R I
Sbjct: 53 SSS--------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI 104
Query: 158 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 216
F+PL A E K KE+ NGRLAM + GF +Q VTGKGP +NL HI+DP N
Sbjct: 105 FNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 159
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 48 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGL 107
L+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG +
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE------- 52
Query: 108 DYLGNPNLIHAQSILAIWACQVVLMGFVEGYR--------------IXXXXXXXXXXXXX 153
+Y + + ++ + +L +VE R I
Sbjct: 53 EYFASSS--------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 104
Query: 154 XXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 213
F+PL A E K KE+ NGRL M + GF +Q VTGKGP +NL HI+DP
Sbjct: 105 PGGIFNPLNFAPT----LEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDP 159
Query: 214 VAN 216
N
Sbjct: 160 WHN 162
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 44 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG--VKFGEAVWF-KAGAQ 100
+ G+ DPET KN + + R L + FP I+ + G VK WF A
Sbjct: 522 EEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELAS 581
Query: 101 IFSEGGLDY--LGNPNLIHAQSILAIWACQVVL 131
+F++ +D+ L + +L + A + VL
Sbjct: 582 LFNKFYMDHPVLKAEEGVREARLLLVMAVEQVL 614
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 177 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 228
E NGR F F+ Q V G I +L +H N A+ Y+ + +PG
Sbjct: 76 EHSNGR------FSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPG 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,389,506
Number of Sequences: 62578
Number of extensions: 298468
Number of successful extensions: 712
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 41
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)