Query 026995
Match_columns 229
No_of_seqs 166 out of 1186
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 2.9E-67 6.2E-72 466.0 17.6 228 2-229 33-262 (262)
2 PLN00171 photosystem light-ha 100.0 1E-58 2.2E-63 419.7 16.5 218 5-222 95-322 (324)
3 PLN00187 photosystem II light- 100.0 2.3E-56 4.9E-61 400.0 16.5 202 7-224 41-286 (286)
4 PLN00147 light-harvesting comp 100.0 1.6E-55 3.5E-60 389.2 15.8 201 7-224 34-251 (252)
5 PLN00099 light-harvesting comp 100.0 4.1E-55 8.9E-60 385.1 15.0 196 15-224 41-238 (243)
6 PLN00098 light-harvesting comp 100.0 1.3E-54 2.8E-59 386.0 15.9 196 10-223 54-265 (267)
7 PLN00101 Photosystem I light-h 100.0 5.3E-54 1.1E-58 379.0 14.2 192 9-222 44-249 (250)
8 PLN00048 photosystem I light h 100.0 1.7E-53 3.8E-58 378.4 15.0 204 10-224 34-261 (262)
9 PLN00097 photosystem I light h 100.0 7.7E-53 1.7E-57 370.3 15.2 188 16-220 42-244 (244)
10 PLN00100 light-harvesting comp 100.0 8.7E-52 1.9E-56 363.5 14.5 177 14-222 31-209 (246)
11 PLN00170 photosystem II light- 100.0 1E-43 2.2E-48 314.1 13.2 171 16-207 49-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 2.4E-41 5.2E-46 292.5 12.5 160 24-203 42-207 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 5.7E-40 1.2E-44 270.7 10.4 148 29-196 1-156 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 8.4E-35 1.8E-39 250.7 12.3 143 43-204 47-199 (202)
15 PLN00101 Photosystem I light-h 99.6 8.5E-16 1.9E-20 136.3 6.2 56 148-203 65-121 (250)
16 PLN00098 light-harvesting comp 99.6 9.7E-16 2.1E-20 137.1 6.2 58 147-204 73-131 (267)
17 PLN00147 light-harvesting comp 99.6 3.7E-15 8E-20 132.5 6.0 54 148-201 57-111 (252)
18 PLN00097 photosystem I light h 99.5 7.9E-15 1.7E-19 129.7 5.9 56 147-202 55-111 (244)
19 PLN00171 photosystem light-ha 99.5 1E-14 2.2E-19 133.2 5.7 55 148-202 122-177 (324)
20 PLN00025 photosystem II light 99.5 1.8E-14 3.8E-19 128.7 5.7 53 149-201 66-119 (262)
21 PLN00170 photosystem II light- 99.5 1.8E-14 4E-19 128.0 5.8 53 149-201 70-123 (255)
22 PLN00100 light-harvesting comp 99.5 3.5E-14 7.5E-19 125.7 5.6 51 148-198 47-98 (246)
23 PLN00099 light-harvesting comp 99.5 5.7E-14 1.2E-18 124.4 5.0 53 147-199 55-108 (243)
24 PLN00187 photosystem II light- 99.4 6.1E-14 1.3E-18 126.5 5.0 53 148-200 64-160 (286)
25 PLN00089 fucoxanthin-chlorophy 99.4 3.8E-13 8.2E-18 116.9 6.4 48 154-201 54-103 (209)
26 PLN00048 photosystem I light h 99.4 1.5E-13 3.2E-18 122.9 3.5 53 34-86 186-238 (262)
27 PF00504 Chloroa_b-bind: Chlor 99.4 5.4E-13 1.2E-17 110.0 6.2 51 149-200 5-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 1.1E-10 2.4E-15 101.0 3.4 45 35-83 142-193 (202)
29 PLN00084 photosystem II subuni 98.3 5.8E-07 1.3E-11 76.0 3.6 49 168-216 130-179 (214)
30 PHA02337 putative high light i 98.3 8.2E-07 1.8E-11 56.4 3.3 28 175-202 4-31 (35)
31 PLN00014 light-harvesting-like 97.7 2.5E-05 5.5E-10 68.8 3.3 35 174-208 160-194 (250)
32 PHA02337 putative high light i 97.2 0.00014 3E-09 46.3 1.4 29 59-87 3-31 (35)
33 PLN00014 light-harvesting-like 94.4 0.014 3.1E-07 51.7 0.5 29 59-87 160-188 (250)
34 PLN00084 photosystem II subuni 92.3 0.06 1.3E-06 45.9 1.2 35 53-87 130-165 (214)
35 PLN02449 ferrochelatase 58.4 7.5 0.00016 38.2 2.5 21 183-203 463-483 (485)
36 PHA00003 B internal scaffoldin 26.7 1.2E+02 0.0026 24.2 4.2 34 150-186 41-75 (120)
37 PHA03159 hypothetical protein; 23.2 67 0.0014 26.5 2.2 18 179-196 72-90 (160)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.9e-67 Score=465.95 Aligned_cols=228 Identities=90% Similarity=1.537 Sum_probs=209.0
Q ss_pred ccccccC--CCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchh
Q 026995 2 RRTVKSA--PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 79 (229)
Q Consensus 2 ~~~~~~~--~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~ 79 (229)
||+++.+ ..+.||++||++|+|||+.++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++
T Consensus 33 ~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~ 112 (262)
T PLN00025 33 RKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTP 112 (262)
T ss_pred chhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhH
Confidence 4544444 78899999999999999668899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCccccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCC
Q 026995 80 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 159 (229)
Q Consensus 80 e~~~~~G~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FD 159 (229)
|+++..|++|.++.|++++.+++++++++|+++|..++++.+.+++++|+++||++|.+|+.+.+.++..+..||||+||
T Consensus 113 e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FD 192 (262)
T PLN00025 113 ELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFD 192 (262)
T ss_pred HHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCC
Confidence 99988888888888999998888899999999998888888888889999999999999987655555556789999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccccCCCCC
Q 026995 160 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229 (229)
Q Consensus 160 Plgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~~~~~~ 229 (229)
||||.+|+++++++|++|||||||||+|++||++|+++||++|++||.+|+++|+++|++++.++++|.+
T Consensus 193 PlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~~~~~~~ 262 (262)
T PLN00025 193 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNFVPGK 262 (262)
T ss_pred ccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998999864
No 2
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1e-58 Score=419.71 Aligned_cols=218 Identities=51% Similarity=0.902 Sum_probs=186.5
Q ss_pred cccCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhc
Q 026995 5 VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~ 84 (229)
.+|...|.||+++|++|+||++.+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++.
T Consensus 95 ~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~ 174 (324)
T PLN00171 95 QKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDL 174 (324)
T ss_pred HhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhcc
Confidence 44778999999999999998755799999999999999999999999999999999999999999999999999999887
Q ss_pred CC-ccccchhhhhcchhhcccCCccCCCCCchh--HHHHHHHHHHHHHHHHHhhhceeecCCC----CC--CCCCCCCCC
Q 026995 85 NG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLI--HAQSILAIWACQVVLMGFVEGYRIGGGP----LG--EGLDPLYPG 155 (229)
Q Consensus 85 ~G-~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~--~~~~i~~~~~~qi~~~g~~E~~~~~~~~----~g--~~~~~~~PG 155 (229)
.| +.+.++.|+++|...+....++|++.|... ..+.+..++++|+++++.+|..|+.+.. .+ ...|..|||
T Consensus 175 ~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPG 254 (324)
T PLN00171 175 FGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPG 254 (324)
T ss_pred CCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCc
Confidence 54 456667899998655554456676667532 2467788899999888888998876521 11 112445788
Q ss_pred CC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccccc
Q 026995 156 GA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 222 (229)
Q Consensus 156 d~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~ 222 (229)
+. |||||+.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|+++|++|||+++.
T Consensus 255 G~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~ 322 (324)
T PLN00171 255 GALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322 (324)
T ss_pred ccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHh
Confidence 87 99999999999999999999999999999999999999999999999999999999999999874
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.3e-56 Score=399.98 Aligned_cols=202 Identities=41% Similarity=0.711 Sum_probs=172.1
Q ss_pred cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHH--------------------------------
Q 026995 7 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET-------------------------------- 54 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~-------------------------------- 54 (229)
....++|++++|++|+ |. .++|+||||++|||||||||||+++++.
T Consensus 41 ~~~~~~~~~~~r~~w~-p~-~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
T PLN00187 41 AKKKSSKVGADRPLWF-PG-AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKS 118 (286)
T ss_pred cccCccCCCCCccccC-CC-CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccc
Confidence 3345789999999999 55 7999999999999999999999988875
Q ss_pred -----------HhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchhhhhcchhhcccCCccCCCCCchhHHHHHHH
Q 026995 55 -----------FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 123 (229)
Q Consensus 55 -----------~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~ 123 (229)
++||||+|||||||||||++|+++||+++ |+ .|+++|...+.++ ..|++.|.. ..+..
T Consensus 119 ~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~-----~W~~aG~~~~~~g-~~y~g~~~p---~~~~~ 187 (286)
T PLN00187 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV-----TWQDAGKVELVDG-SSYLGQPLP---FSITT 187 (286)
T ss_pred cccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC-----ccccccccccccc-ccccccccc---hhHHH
Confidence 69999999999999999999999999985 33 4888876544433 356665532 23456
Q ss_pred HHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcc
Q 026995 124 IWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 202 (229)
Q Consensus 124 ~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gp 202 (229)
++++|++++|++|.+|..+. ...+..+|||+ ||||||.+|+++++++|++|||||||||+|++||++|+.+||++|
T Consensus 188 l~~iqvllmG~~E~~R~~~~---~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GP 264 (286)
T PLN00187 188 LIWIEVLVIGYIEFQRNAEL---DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGP 264 (286)
T ss_pred HHHHHHHHHHHHHhhhccCC---CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCh
Confidence 78889999999999987542 11245799997 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCccCCccccccc
Q 026995 203 IENLYDHIADPVANNAWAYATN 224 (229)
Q Consensus 203 l~~l~~~~~~P~~~~~~~~~~~ 224 (229)
++||.+|+++|+++||+++.++
T Consensus 265 i~nL~~Hladp~~~n~~~~~~~ 286 (286)
T PLN00187 265 LNNWATHLSDPLHTTIIDTFSS 286 (286)
T ss_pred HHHHHHHhcCcccccHHHhccC
Confidence 9999999999999999988654
No 4
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.6e-55 Score=389.24 Aligned_cols=201 Identities=42% Similarity=0.739 Sum_probs=169.1
Q ss_pred cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCC
Q 026995 7 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 86 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G 86 (229)
+.-.+..++.+|++|+ || +++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|
T Consensus 34 ~~~~~~~~~~~R~~wl-P~-~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 34 SGGINPVVAQERPTWL-PG-LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred cccCcccCCCCccccC-CC-CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 4455678889999999 67 799999999999999999999999999999999999999999999999999999998776
Q ss_pred ccccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC--CC--------------CCCCC
Q 026995 87 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG--PL--------------GEGLD 150 (229)
Q Consensus 87 ~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~--~~--------------g~~~~ 150 (229)
+. ..+.|++++...+. + .....++++|+++||++|..|+.+. +. .+..+
T Consensus 112 ~~-~~p~w~~ag~~~~~------~--------~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~ 176 (252)
T PLN00147 112 IR-NLPVWYEAGAVKFE------F--------ASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLE 176 (252)
T ss_pred Cc-CCcchhhcccchhc------c--------ccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccC
Confidence 53 23568876543211 0 1123566788899999999875431 10 01224
Q ss_pred CCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccccccc
Q 026995 151 PLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 224 (229)
Q Consensus 151 ~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~ 224 (229)
+.||||+ ||||||.+|+++++++|++|||||||||+|++||++|+++||++|+++|.+|+++|++|||+++.++
T Consensus 177 ~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 177 PGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred CCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 5699999 9999999999999999999999999999999999999999999999999999999999999998764
No 5
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=4.1e-55 Score=385.13 Aligned_cols=196 Identities=41% Similarity=0.703 Sum_probs=163.4
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchhh
Q 026995 15 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 94 (229)
Q Consensus 15 ~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~w 94 (229)
.++|..|+ |+ .++|+||||++|||+|||||||++++++++|||++|||||||||||++|+++||.++. ..|
T Consensus 41 ~~~~~~w~-P~-~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------~~w 111 (243)
T PLN00099 41 VTMSADWM-PG-QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------GNW 111 (243)
T ss_pred cccccccc-CC-CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-------CCc
Confidence 37788999 78 7999999999999999999999999999999999999999999999999999999763 135
Q ss_pred hhcch-hhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 026995 95 FKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 173 (229)
Q Consensus 95 ~~ag~-~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FDPlgl~~d~~~~~~~ 173 (229)
++++. ..++++..+|++++. ....++.++++|+++||++|.+|.... + ..+..+|||.||||||.+|+++++++
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~--~~~~l~~~~~iqvl~ig~~E~~r~~~~--~-~~~~~yPGd~FDPlGl~kd~~~~~~~ 186 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK--D-PEKKKYPGGAFDPLGYSKDPKKFEEY 186 (243)
T ss_pred ccccchhccCcchhhhccCcc--chhhHHHHHHHHHHHHHHHHHHhhccC--C-CCCCcCCCCcCCcccccCCHHHHHHH
Confidence 55542 123444445555543 234567788899999999998765321 1 11357999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH-hhcCCcchhhhhhhhcCCccCCccccccc
Q 026995 174 KVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLYDHIADPVANNAWAYATN 224 (229)
Q Consensus 174 ~~~ELkNGRLAMlai~G~v~qe-~itG~gpl~~l~~~~~~P~~~~~~~~~~~ 224 (229)
|++||||||||||||+||++|+ .+||++|++||.+|+++|+++|+.+.+..
T Consensus 187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 9999999999999999999999 57999999999999999999999886543
No 6
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.3e-54 Score=386.03 Aligned_cols=196 Identities=42% Similarity=0.791 Sum_probs=165.8
Q ss_pred CCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccc
Q 026995 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 89 (229)
Q Consensus 10 ~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f 89 (229)
...+++++|++|+ |. .++|+||||++|||+|||||||++++++++|||++|||||||||||++|+++||+++..|+ +
T Consensus 54 ~~~~~~~~r~~w~-Pg-~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-~ 130 (267)
T PLN00098 54 VCEPLPPDRPLWF-PG-SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-I 130 (267)
T ss_pred ccccCCCCccccC-CC-CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc-c
Confidence 4456889999999 54 7899999999999999999999999999999999999999999999999999999887665 4
Q ss_pred cchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC--C--C----------CCCCCCCCCC
Q 026995 90 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG--P--L----------GEGLDPLYPG 155 (229)
Q Consensus 90 ~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~--~--~----------g~~~~~~~PG 155 (229)
....|++++.. +|+++|. .++++|+++||++|..|+.+. + . ....+..|||
T Consensus 131 ~~~~w~~Ag~~-------~~~~~~~--------~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPG 195 (267)
T PLN00098 131 ENFSWYDAGAR-------EYFADPT--------TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPG 195 (267)
T ss_pred cccccccccch-------hhccCch--------HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCC
Confidence 45568887643 2433332 345678889999999876431 1 0 0012457999
Q ss_pred CC-CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccc
Q 026995 156 GA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 223 (229)
Q Consensus 156 d~-FDPlgl~~-d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~ 223 (229)
|+ ||||+|.+ |+++++++|++|||||||||+|++||++|+.+||++|++||.+|+++|+++||+++.+
T Consensus 196 g~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 265 (267)
T PLN00098 196 GLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265 (267)
T ss_pred CccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhcc
Confidence 99 99999974 8889999999999999999999999999999999999999999999999999999765
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=5.3e-54 Score=379.02 Aligned_cols=192 Identities=39% Similarity=0.709 Sum_probs=162.0
Q ss_pred CCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCcc
Q 026995 9 PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 88 (229)
Q Consensus 9 ~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~ 88 (229)
..|.++..+|.+|+ |+ +++|+||||++|||+|||||||++|+++++|+|++|||||||||||++|+++||+++..|+
T Consensus 44 ~~~~~~~~~r~~W~-P~-~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~- 120 (250)
T PLN00101 44 TRSFKVEAKKGEWL-PG-LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI- 120 (250)
T ss_pred cccccccccccccC-CC-CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC-
Confidence 45678889999999 67 7999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC---------CCCC-----CCCCCCC
Q 026995 89 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG---------PLGE-----GLDPLYP 154 (229)
Q Consensus 89 f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~---------~~g~-----~~~~~~P 154 (229)
+..+.|+++|.. +|++.+ ..++.+|+++++++|..|+.+. +... ..|..||
T Consensus 121 ~~~p~w~~ag~~-------~~~~~~--------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YP 185 (250)
T PLN00101 121 INAPQWYDAGKA-------EYFASS--------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 185 (250)
T ss_pred cCCCccccccch-------hhcccc--------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCC
Confidence 334679887643 233222 2356678889999999886531 1111 1245699
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccccc
Q 026995 155 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 222 (229)
Q Consensus 155 Gd~FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~ 222 (229)
|+.||||||+++ +++|+||||||||||+|++||++|+++||++|++||.+|+++|+++||++++
T Consensus 186 GG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 186 GGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred CCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhc
Confidence 999999999865 3789999999999999999999999999999999999999999999999875
No 8
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1.7e-53 Score=378.35 Aligned_cols=204 Identities=44% Similarity=0.756 Sum_probs=166.7
Q ss_pred CCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCh-----HHHhhhHHHHHhhhhhhhhhhcccchhhhhhc
Q 026995 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFAKNRELEVIHSRWAMLGALGCVFPEILSK 84 (229)
Q Consensus 10 ~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~-----~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~ 84 (229)
....++++|++|+ |- .+.|+||||++|||+|||||||++.. .+.+|+|++|||||||||||++|++++|+++.
T Consensus 34 ~~~~~~~~r~~w~-p~-~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~ 111 (262)
T PLN00048 34 PPAKQGADRQLWF-AS-KQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGK 111 (262)
T ss_pred CCCCCCCCCceec-CC-CCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhcc
Confidence 4567788999999 54 79999999999999999999997421 26789999999999999999999999999987
Q ss_pred CCccc--cchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC--CC--C-----------C
Q 026995 85 NGVKF--GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG--PL--G-----------E 147 (229)
Q Consensus 85 ~G~~f--~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~--~~--g-----------~ 147 (229)
.|+-. ....|++++. +...+..+|+++|. .++++|+++||++|.+|+++. |. + .
T Consensus 112 ~g~~~~~~~~~w~~ag~-~~~~~~~~y~~~p~--------~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~ 182 (262)
T PLN00048 112 AGLIPQETALPWFQSGV-IPPAGTYDYWADPY--------TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLG 182 (262)
T ss_pred CCccccccccccccccc-cccccccccccchh--------HHHHHHHHHhhheeeeccccccCCCcccccccccchhccc
Confidence 66521 1224888764 22333345655442 456778899999999987641 10 0 0
Q ss_pred C-CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccccccc
Q 026995 148 G-LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 224 (229)
Q Consensus 148 ~-~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~ 224 (229)
+ .+..||||+ |||||+.+|+++++++|++|||||||||+|++||++|+++||++|++||.+|+++|+++||+++..+
T Consensus 183 ~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 183 GSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred cccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 0 145799998 9999999999999999999999999999999999999999999999999999999999999998754
No 9
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=7.7e-53 Score=370.30 Aligned_cols=188 Identities=40% Similarity=0.709 Sum_probs=158.3
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchhhh
Q 026995 16 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 95 (229)
Q Consensus 16 ~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~w~ 95 (229)
++|++|+ |. .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|+. ..+.|+
T Consensus 42 ~~R~~w~-Pg-~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~-~~p~W~ 118 (244)
T PLN00097 42 ADRPTWL-PG-KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA-DLPNWI 118 (244)
T ss_pred CCCcccC-CC-CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc-cCCccc
Confidence 6899999 55 68999999999999999999999999999999999999999999999999999999887763 345799
Q ss_pred hcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC--C--CC-----------CCCCCCCCCCCCCC
Q 026995 96 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG--P--LG-----------EGLDPLYPGGAFDP 160 (229)
Q Consensus 96 ~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~--~--~g-----------~~~~~~~PGd~FDP 160 (229)
+++... .|+.. ...++.+|+++++++|..|+.+. + .+ +..|..|||+.|||
T Consensus 119 ~Ag~~~------~~~~~--------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDP 184 (244)
T PLN00097 119 DAAKWD------GYWAG--------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDK 184 (244)
T ss_pred cCCcch------hcccc--------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCc
Confidence 886421 12211 12345668888999999886531 1 00 11234589988999
Q ss_pred CCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccc
Q 026995 161 LGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA 220 (229)
Q Consensus 161 lgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~ 220 (229)
|||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|+++|+++||+.
T Consensus 185 lgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~~ 244 (244)
T PLN00097 185 FGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIFG 244 (244)
T ss_pred cccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999873
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=8.7e-52 Score=363.50 Aligned_cols=177 Identities=37% Similarity=0.619 Sum_probs=150.0
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchh
Q 026995 14 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAV 93 (229)
Q Consensus 14 ~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~ 93 (229)
-..+|++|+ |+ +++|+||||++|||+|||||||++++++++|+|++|||||||||||++|++++|+++. +.
T Consensus 31 ~~~~r~~W~-P~-~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~-------P~ 101 (246)
T PLN00100 31 AARARPMWY-PG-ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL-------PK 101 (246)
T ss_pred ccCCCcccC-CC-CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------cc
Confidence 347899999 78 7999999999999999999999999999999999999999999999999999998763 34
Q ss_pred hhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC-CCCCCCCCCCCCCC-CCCCCCCCChHHHH
Q 026995 94 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG-PLGEGLDPLYPGGA-FDPLGLADDPDQFA 171 (229)
Q Consensus 94 w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~-~~g~~~~~~~PGd~-FDPlgl~~d~~~~~ 171 (229)
|++++... |.. .+..++++|++++|++|..|+.+. +.+ +...|||+ |||||+.+ +
T Consensus 102 w~~ag~~~-------~~~--------~~~~l~~iqill~g~~E~~r~~~~~~~g---~~~~pg~~~FDPLGl~~-----~ 158 (246)
T PLN00100 102 FWEAGAEK-------YGL--------DLQTLVLIQVVVMAVLEAARYRGFMKTG---ESGVLSFFPFDPTGMDS-----P 158 (246)
T ss_pred hhhcchhh-------hcc--------chhHHHHHHHHHHHHHhhhccccccccc---ccCCCCCCCCCcccccH-----H
Confidence 77765421 110 123466789989999999987642 112 34568899 99999953 5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccccc
Q 026995 172 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 222 (229)
Q Consensus 172 ~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~ 222 (229)
++|+||||||||||+||+||++|+.+||++|++||.+|+++|+++||+++.
T Consensus 159 ~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 159 EMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 799999999999999999999999999999999999999999999999853
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1e-43 Score=314.11 Aligned_cols=171 Identities=40% Similarity=0.676 Sum_probs=136.7
Q ss_pred CCCCCccCCCC-----CCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCcccc
Q 026995 16 PDRPKYLGPFS-----EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 90 (229)
Q Consensus 16 ~~~~~~~~p~~-----~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~ 90 (229)
.+|.+|+ |+. ...|+||||++|||+||||+||++|+++++|||++|||||||||||++|++++|+++ |
T Consensus 49 ~~~k~w~-p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g---- 121 (255)
T PLN00170 49 QPKKSWI-PAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G---- 121 (255)
T ss_pred CCCcccc-CCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C----
Confidence 3455666 331 136999999999999999999999999999999999999999999999999999885 2
Q ss_pred chhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC--CCC------------------CCCC
Q 026995 91 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG--PLG------------------EGLD 150 (229)
Q Consensus 91 ~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~--~~g------------------~~~~ 150 (229)
..|+++|... .++ .| ..+.+++.+|++++|++|.+|+.+. |.. ...+
T Consensus 122 -~~w~~aG~~~------~~~-~p-----~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~ 188 (255)
T PLN00170 122 -IPWFEAGADP------GAI-AP-----FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGL 188 (255)
T ss_pred -CChhhCCccc------ccc-Cc-----cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCC
Confidence 2488887531 011 12 1234577789999999999997641 110 0113
Q ss_pred CCCCCCC-CCCCCCCC---------ChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhh
Q 026995 151 PLYPGGA-FDPLGLAD---------DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 207 (229)
Q Consensus 151 ~~~PGd~-FDPlgl~~---------d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~ 207 (229)
..|||+. ||||||.+ |+++++++|++|||||||||+|++||++|. .||++||++|.
T Consensus 189 ~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 189 QGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 4689987 99999985 678899999999999999999999999999 69999999873
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=292.55 Aligned_cols=160 Identities=30% Similarity=0.388 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCC-ChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchhhhhcchhhc
Q 026995 24 PFSEQTPSYLTGEFPGDYGWDTAGLSA-DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF 102 (229)
Q Consensus 24 p~~~~~p~~l~g~~~G~~gfDPlgl~~-~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~w~~ag~~~~ 102 (229)
|| +++|+.|+|. .||++||||||++ ++++++|+|++||||||+||||++|+++||.++.+|.-+ ++
T Consensus 42 pf-~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~----~~------- 108 (209)
T PLN00089 42 GF-AAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY----SF------- 108 (209)
T ss_pred cc-ccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc----cc-------
Confidence 67 7888899999 8999999999985 577899999999999999999999999999988765310 01
Q ss_pred ccCCccCCCCCchhH-HHHHHH-HHHHHH-HHHHhhhceeecCCCCCCCCCCCCCCCC-CCCCCCC-CChHHHHHHHHHH
Q 026995 103 SEGGLDYLGNPNLIH-AQSILA-IWACQV-VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLA-DDPDQFAELKVKE 177 (229)
Q Consensus 103 ~~g~~~~~~~p~~~~-~~~i~~-~~~~qi-~~~g~~E~~~~~~~~~g~~~~~~~PGd~-FDPlgl~-~d~~~~~~~~~~E 177 (229)
.+.|+... ...++. .++.|+ ++||++|.............++++|||+ ||||+|. +|+++++++|++|
T Consensus 109 -------~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~E 181 (209)
T PLN00089 109 -------AAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKE 181 (209)
T ss_pred -------cccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHH
Confidence 01122111 112222 235677 4799999532111000011135789999 9999995 5899999999999
Q ss_pred HhhhhHHHHHHHHHHHHHhhcCCcch
Q 026995 178 LKNGRLAMFSMFGFFVQAIVTGKGPI 203 (229)
Q Consensus 178 LkNGRLAMlai~G~v~qe~itG~gpl 203 (229)
|||||||||||+||++|+.+||++.+
T Consensus 182 l~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 182 LKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998865
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=5.7e-40 Score=270.69 Aligned_cols=148 Identities=46% Similarity=0.777 Sum_probs=112.1
Q ss_pred CCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhc-CCcc-c-cchhhhhcchhhcccC
Q 026995 29 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVK-F-GEAVWFKAGAQIFSEG 105 (229)
Q Consensus 29 ~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~-~G~~-f-~~~~w~~ag~~~~~~g 105 (229)
+|++|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|+++. ++.. + ..+.|.+++
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~------- 72 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAG------- 72 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTT-------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhh-------
Confidence 589999999999999999999877 8999999999999999999999999999864 2211 1 112232211
Q ss_pred CccCCCCCchhHHHHHHHHHH-HHHHHHHhhhceeecCCCC---CCCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhh
Q 026995 106 GLDYLGNPNLIHAQSILAIWA-CQVVLMGFVEGYRIGGGPL---GEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKN 180 (229)
Q Consensus 106 ~~~~~~~p~~~~~~~i~~~~~-~qi~~~g~~E~~~~~~~~~---g~~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkN 180 (229)
. + + ++..++ +.+++++++|.++...... ....+..+|||+ |||+++.+|+++++++|++||||
T Consensus 73 --------~-~--~-~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~N 140 (156)
T PF00504_consen 73 --------G-I--P-VPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKN 140 (156)
T ss_dssp --------S-S--S-SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHH
T ss_pred --------h-h--h-hhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHH
Confidence 0 0 0 122233 4456899999986543211 112356899998 99999998889999999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q 026995 181 GRLAMFSMFGFFVQAI 196 (229)
Q Consensus 181 GRLAMlai~G~v~qe~ 196 (229)
||||||||+|+++||.
T Consensus 141 GRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 141 GRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999983
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=8.4e-35 Score=250.67 Aligned_cols=143 Identities=24% Similarity=0.384 Sum_probs=104.2
Q ss_pred CcccccCC--ChHHHhhhHHHHHhhhhhhhhhhcccchhhh-hhcCCc-cccchhhhhcchhhcccCCccCCCCCchh-H
Q 026995 43 WDTAGLSA--DPETFAKNRELEVIHSRWAMLGALGCVFPEI-LSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLI-H 117 (229)
Q Consensus 43 fDPlgl~~--~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~-~~~~G~-~f~~~~w~~ag~~~~~~g~~~~~~~p~~~-~ 117 (229)
|||+||++ |+++++++|++|||||||||||++|+++++. ++.+|. .+. + ..+.+.|... +
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~-------g--------~~~~~~p~~~~a 111 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYS-------G--------TSFSDIPNGFAA 111 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccc-------c--------ccccccccchhh
Confidence 99999974 7899999999999999999999999999996 343331 010 0 0111112211 1
Q ss_pred HHHHHHHHHHHH-HHHHhhhceeecCCCCCCCCCCCCCCCC-CC--CCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026995 118 AQSILAIWACQV-VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FD--PLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFF 192 (229)
Q Consensus 118 ~~~i~~~~~~qi-~~~g~~E~~~~~~~~~g~~~~~~~PGd~-FD--Plgl~~-d~~~~~~~~~~ELkNGRLAMlai~G~v 192 (229)
...++..+++|+ ++||++|..+... +.+ ++++|||+ ++ ++||.. |++++++||++||||||||||||+||+
T Consensus 112 ~~~vp~~g~~qi~~~ig~~E~~~~~~-~~~---~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~ 187 (202)
T PLN00120 112 LDAIPTAGLLQILAFIGFLELAVMKD-ITG---EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALM 187 (202)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhcc-ccc---CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244556677887 5899999865432 111 24678875 33 455553 788999999999999999999999999
Q ss_pred HHHhhcCCcchh
Q 026995 193 VQAIVTGKGPIE 204 (229)
Q Consensus 193 ~qe~itG~gpl~ 204 (229)
+||.++|+.|+-
T Consensus 188 ~qe~l~g~~~~~ 199 (202)
T PLN00120 188 VHEQLGVELPII 199 (202)
T ss_pred HHHHccCCCcCC
Confidence 999999998863
No 15
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.60 E-value=8.5e-16 Score=136.33 Aligned_cols=56 Identities=41% Similarity=0.678 Sum_probs=52.8
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 203 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl 203 (229)
.+++.+|||+ ||||+|.+|+++++++|++||+||||||+|++|+++||++++.+++
T Consensus 65 ~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 65 YLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred ccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4678899999 9999999999999999999999999999999999999999998776
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.60 E-value=9.7e-16 Score=137.12 Aligned_cols=58 Identities=38% Similarity=0.594 Sum_probs=53.3
Q ss_pred CCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchh
Q 026995 147 EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 204 (229)
Q Consensus 147 ~~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~ 204 (229)
+.+|+.+|||+ ||||+|.+|+++++++|++||||||+||+|++|+++||++++.++++
T Consensus 73 ~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 73 EWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred ccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 34678899999 99999999999999999999999999999999999999999877665
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.56 E-value=3.7e-15 Score=132.47 Aligned_cols=54 Identities=33% Similarity=0.560 Sum_probs=50.4
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCc
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 201 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~g 201 (229)
.+|+.+|||+ ||||+|.+|+++++++|++||||||+||+|++|+++||+++..+
T Consensus 57 ~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 57 HLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred cCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 4678899999 99999999999999999999999999999999999999997654
No 18
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.53 E-value=7.9e-15 Score=129.71 Aligned_cols=56 Identities=32% Similarity=0.478 Sum_probs=51.5
Q ss_pred CCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcc
Q 026995 147 EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 202 (229)
Q Consensus 147 ~~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gp 202 (229)
+.+++..|||+ ||||+|++|+++++++|++||+|||+||||++|+++||++++.+.
T Consensus 55 ~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 55 AHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred cccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 34678899999 999999999999999999999999999999999999999987654
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.52 E-value=1e-14 Score=133.17 Aligned_cols=55 Identities=29% Similarity=0.443 Sum_probs=50.5
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcc
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 202 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gp 202 (229)
.+|+..|||+ ||||||++|+++++++|++||||||+||||++|+++||++++.+.
T Consensus 122 yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 122 HLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred ccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 4578899999 999999999999999999999999999999999999999876543
No 20
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.50 E-value=1.8e-14 Score=128.74 Aligned_cols=53 Identities=30% Similarity=0.582 Sum_probs=49.3
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCc
Q 026995 149 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 201 (229)
Q Consensus 149 ~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~g 201 (229)
+++..|||+ ||||||++|+++++++|++||+|||+||+|++|+++||++++.+
T Consensus 66 Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 66 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred ccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 467789999 99999999999999999999999999999999999999998653
No 21
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.50 E-value=1.8e-14 Score=128.04 Aligned_cols=53 Identities=42% Similarity=0.638 Sum_probs=49.8
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCc
Q 026995 149 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 201 (229)
Q Consensus 149 ~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~g 201 (229)
+++.+|||+ ||||+|.+|+++++++|++||+|||+||+|++|+++||+++|..
T Consensus 70 l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 70 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred ccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 567899999 99999999999999999999999999999999999999998753
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.48 E-value=3.5e-14 Score=125.66 Aligned_cols=51 Identities=37% Similarity=0.539 Sum_probs=48.0
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 198 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~it 198 (229)
.+|+..|||+ ||||+|++++++++++|++||||||+||+|++|+++||+++
T Consensus 47 ~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 47 YLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 4678899999 99999999999999999999999999999999999999975
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.45 E-value=5.7e-14 Score=124.36 Aligned_cols=53 Identities=34% Similarity=0.481 Sum_probs=48.8
Q ss_pred CCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 026995 147 EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 199 (229)
Q Consensus 147 ~~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG 199 (229)
..+|+..|||+ ||||+|++++++++++|++||||||+||+|++|+++||+++.
T Consensus 55 ~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 55 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred ccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 34678899999 999999999999999999999999999999999999999753
No 24
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.45 E-value=6.1e-14 Score=126.53 Aligned_cols=53 Identities=32% Similarity=0.505 Sum_probs=48.0
Q ss_pred CCCCCCCCCC-CCCCCCCCChHH-------------------------------------------HHHHHHHHHhhhhH
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQ-------------------------------------------FAELKVKELKNGRL 183 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~-------------------------------------------~~~~~~~ELkNGRL 183 (229)
.+++..|||+ ||||||+++++. ++++|+.||+|||+
T Consensus 64 ~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRw 143 (286)
T PLN00187 64 WLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRW 143 (286)
T ss_pred cccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHH
Confidence 4577899999 999999988875 59999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 026995 184 AMFSMFGFFVQAIVTGK 200 (229)
Q Consensus 184 AMlai~G~v~qe~itG~ 200 (229)
||||++|++++|+++|.
T Consensus 144 AMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 144 AMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHhhchhhHHhccCC
Confidence 99999999999998763
No 25
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.40 E-value=3.8e-13 Score=116.90 Aligned_cols=48 Identities=40% Similarity=0.656 Sum_probs=42.8
Q ss_pred CCCC-CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCc
Q 026995 154 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 201 (229)
Q Consensus 154 PGd~-FDPlgl~~-d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~g 201 (229)
.||+ |||||+.+ ++++++++|++||||||+||+|++|+++||.++..+
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 6887 99999985 567799999999999999999999999999987544
No 26
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.39 E-value=1.5e-13 Score=122.92 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=49.0
Q ss_pred CCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCC
Q 026995 34 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 86 (229)
Q Consensus 34 ~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G 86 (229)
+..+|||++|||+||++|+++++++|.+||||||+||+|++|+++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999988655
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.39 E-value=5.4e-13 Score=109.96 Aligned_cols=51 Identities=51% Similarity=0.790 Sum_probs=46.4
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCC
Q 026995 149 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 200 (229)
Q Consensus 149 ~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~ 200 (229)
+++..+||+ |||++|++++ +++++|..||+|||+||+|++|++++|+.++.
T Consensus 5 l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 5 LDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred ccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 355678999 9999999877 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.04 E-value=1.1e-10 Score=101.03 Aligned_cols=45 Identities=44% Similarity=0.732 Sum_probs=38.4
Q ss_pred CCCCCC-------CCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhh
Q 026995 35 GEFPGD-------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 83 (229)
Q Consensus 35 g~~~G~-------~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~ 83 (229)
++.||| +||||+ ++++.+++|.+||||||+||+|++|++++|++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467784 556654 678899999999999999999999999999875
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.29 E-value=5.8e-07 Score=75.95 Aligned_cols=49 Identities=41% Similarity=0.507 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc-CCcchhhhhhhhcCCccC
Q 026995 168 DQFAELKVKELKNGRLAMFSMFGFFVQAIVT-GKGPIENLYDHIADPVAN 216 (229)
Q Consensus 168 ~~~~~~~~~ELkNGRLAMlai~G~v~qe~it-G~gpl~~l~~~~~~P~~~ 216 (229)
...+..|..|+-||||||+||+--++.|.+| |+|++.|+.....-|+..
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e 179 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVID 179 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchh
Confidence 3466778899999999999999999999999 999999999999999873
No 30
>PHA02337 putative high light inducible protein
Probab=98.28 E-value=8.2e-07 Score=56.42 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhcCCcc
Q 026995 175 VKELKNGRLAMFSMFGFFVQAIVTGKGP 202 (229)
Q Consensus 175 ~~ELkNGRLAMlai~G~v~qe~itG~gp 202 (229)
.+|+-||||||+||...+..|++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999999864
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.72 E-value=2.5e-05 Score=68.81 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=32.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhh
Q 026995 174 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 208 (229)
Q Consensus 174 ~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~ 208 (229)
...|+-|||+|||||+..++.|++||++.+.|+..
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 45899999999999999999999999999998854
No 32
>PHA02337 putative high light inducible protein
Probab=97.24 E-value=0.00014 Score=46.29 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHhhhhhhhhhhcccchhhhhhcCCc
Q 026995 59 RELEVIHSRWAMLGALGCVFPEILSKNGV 87 (229)
Q Consensus 59 r~aElkHGR~AMLA~~G~~~~e~~~~~G~ 87 (229)
..+|..|||+||++++-.+..|+++..++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999998876443
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=94.35 E-value=0.014 Score=51.74 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHHHHhhhhhhhhhhcccchhhhhhcCCc
Q 026995 59 RELEVIHSRWAMLGALGCVFPEILSKNGV 87 (229)
Q Consensus 59 r~aElkHGR~AMLA~~G~~~~e~~~~~G~ 87 (229)
.++|+.|||+||++++-.++.|+++..|+
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gl 188 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGL 188 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcH
Confidence 67899999999999999999998875443
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=92.34 E-value=0.06 Score=45.95 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHhhhHHHHHhhhhhhhhhhcccchhhhhh-cCCc
Q 026995 53 ETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGV 87 (229)
Q Consensus 53 ~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~-~~G~ 87 (229)
...+..+..|+.+||+||++++--++.|.++ ..|+
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGi 165 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGP 165 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcch
Confidence 3456667789999999999999999999988 4554
No 35
>PLN02449 ferrochelatase
Probab=58.42 E-value=7.5 Score=38.21 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhcCCcch
Q 026995 183 LAMFSMFGFFVQAIVTGKGPI 203 (229)
Q Consensus 183 LAMlai~G~v~qe~itG~gpl 203 (229)
+||+||+.+++-|+++|+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999987
No 36
>PHA00003 B internal scaffolding protein
Probab=26.65 E-value=1.2e+02 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHH
Q 026995 150 DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMF 186 (229)
Q Consensus 150 ~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMl 186 (229)
++.+|-.+ |||.- ..-+.+|.+..||.+||-+--
T Consensus 41 ~~t~p~gLRrdpvq---~d~EaERqkr~~iEagk~~c~ 75 (120)
T PHA00003 41 NGTDPSGLRRDPVQ---QDLEAERQKRADIEAGKAICA 75 (120)
T ss_pred CCCCccccccCccc---chHHHHHHHHHHHHHHHHHHH
Confidence 45567666 88742 223567888899999997654
No 37
>PHA03159 hypothetical protein; Provisional
Probab=23.22 E-value=67 Score=26.54 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=15.5
Q ss_pred hhhh-HHHHHHHHHHHHHh
Q 026995 179 KNGR-LAMFSMFGFFVQAI 196 (229)
Q Consensus 179 kNGR-LAMlai~G~v~qe~ 196 (229)
|=|| +||+++..+++|.+
T Consensus 72 NWGrvvAmLsFsa~vlQkI 90 (160)
T PHA03159 72 NWGKVVAMISFSAAALQTI 90 (160)
T ss_pred cHHHHHHHHhhHHHHHHHH
Confidence 4577 99999999999976
Done!