Query 026995
Match_columns 229
No_of_seqs 166 out of 1186
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1.3E-68 4.6E-73 467.8 15.7 223 7-229 10-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.6E-57 5.3E-62 398.5 7.4 195 12-222 5-242 (243)
3 2wsc_3 LHCA3, type II chloroph 100.0 1.3E-53 4.5E-58 380.6 3.9 200 13-224 51-275 (276)
4 2wsc_2 LHCA2, type II chloroph 100.0 1.7E-53 5.7E-58 378.8 0.3 193 12-223 58-267 (269)
5 2wsc_4 Chlorophyll A-B binding 100.0 2.4E-53 8.2E-58 374.9 -0.3 189 12-223 46-249 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 5.2E-52 1.8E-56 364.3 4.8 194 17-224 44-239 (241)
7 2bhw_A Chlorophyll A-B binding 99.5 8.1E-15 2.8E-19 127.9 7.2 52 148-199 35-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.5 4.4E-15 1.5E-19 130.9 -1.0 55 149-203 66-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 7.1E-15 2.4E-19 130.6 0.3 55 149-203 77-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 5E-14 1.7E-18 123.3 2.9 52 148-199 23-118 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 99.4 6.4E-14 2.2E-18 122.8 -0.0 52 148-199 57-109 (241)
12 2wsc_3 LHCA3, type II chloroph 99.3 2.7E-13 9.3E-18 120.8 1.1 54 34-87 200-253 (276)
13 2dpr_A CON-T(K7GLA); conantoxi 28.5 32 0.0011 19.2 1.8 15 52-66 6-20 (26)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.3e-68 Score=467.85 Aligned_cols=223 Identities=87% Similarity=1.480 Sum_probs=205.8
Q ss_pred cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCC
Q 026995 7 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 86 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G 86 (229)
++++|+||+++|++|+|||+.++|+||||+++||+|||||||++|+++++||||+|||||||||||++|++++|+++..|
T Consensus 10 ~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 67899999999999999986689999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026995 87 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 166 (229)
Q Consensus 87 ~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FDPlgl~~d 166 (229)
++|+++.|+++|...+.+++++|+++|...+.|++..++++|+++||.+|.+|+.+++.++..+..+|||+||||++.+|
T Consensus 90 ~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~ 169 (232)
T 2bhw_A 90 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD 169 (232)
T ss_dssp CCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCS
T ss_pred cCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccc
Confidence 88888889999877787777888888877777888888999999999999998765444444466899999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccccCCCCC
Q 026995 167 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229 (229)
Q Consensus 167 ~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~~~~~~ 229 (229)
+++++++|.+|||||||||+||+|+++|+.+||++|++|+.+|+++|+++|++++.+++||++
T Consensus 170 ~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~ 232 (232)
T 2bhw_A 170 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred hHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.6e-57 Score=398.52 Aligned_cols=195 Identities=41% Similarity=0.710 Sum_probs=131.5
Q ss_pred CcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChH--------------------------------------
Q 026995 12 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-------------------------------------- 53 (229)
Q Consensus 12 ~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~-------------------------------------- 53 (229)
+|+.++|++|++ +.++|+||||++|||+|||||||++++|
T Consensus 5 ~~~~~~r~~w~p--g~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccC--CCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 677789999994 4789999999999999999999998876
Q ss_pred -----HHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHH
Q 026995 54 -----TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 128 (229)
Q Consensus 54 -----~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~q 128 (229)
+++|||++|||||||||||++|++++|+++ |+ .|+++|...+. ++++|+++|.. ..+..++++|
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g~-----~W~~aG~~~~~-~g~~y~g~p~~---~~i~~l~~~q 151 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--GI-----TWQDAGKVELI-EGSSYLGQPLP---FSMTTLIWIE 151 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SC-----CTTTHHHHHHH-SCEEETTEEEC---CCHHHHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--Cc-----ccccccccccc-cccccccCccc---hhhHHHHHHH
Confidence 378999999999999999999999999986 22 48877765443 35677776542 2455678889
Q ss_pred HHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhh
Q 026995 129 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 208 (229)
Q Consensus 129 i~~~g~~E~~~~~~~~~g~~~~~~~PGd~FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~ 208 (229)
+++||++|.+|+.+.. ..+..+|||+|||||+.+|+++++++|.+|||||||||+||+|+++|+++||++|++||.+
T Consensus 152 v~lmG~~E~~R~~~~~---~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~ 228 (243)
T 3pl9_A 152 VLVIGYIEFQRNAELD---TEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228 (243)
T ss_dssp HHHHHHHHHHHHSCCC---TTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHhhcccC---CccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 9999999999976521 1134689999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccCCccccc
Q 026995 209 HIADPVANNAWAYA 222 (229)
Q Consensus 209 ~~~~P~~~~~~~~~ 222 (229)
|+++|++|||+++.
T Consensus 229 HladP~~~ni~~~~ 242 (243)
T 3pl9_A 229 HLSDPLHTTILDRF 242 (243)
T ss_dssp HHHCSGGGSTTTTT
T ss_pred HhcCcchhhhhhhc
Confidence 99999999999864
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.3e-53 Score=380.62 Aligned_cols=200 Identities=46% Similarity=0.824 Sum_probs=110.2
Q ss_pred cCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHH------hhhHHHHHhhhhhhhhhhcccchhhhhhcCC
Q 026995 13 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF------AKNRELEVIHSRWAMLGALGCVFPEILSKNG 86 (229)
Q Consensus 13 ~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~------~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G 86 (229)
+|+++|++|+ |+ .++|+||+|++|||+||||||| +|++++ +|+|++|||||||||||++|++++|+++..|
T Consensus 51 ~~g~~R~~wl-P~-~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g 127 (276)
T 2wsc_3 51 KQGSDRPLWF-AS-KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127 (276)
T ss_dssp -------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCC
T ss_pred ccCCCccccC-CC-CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccc
Confidence 3999999999 66 7999999999999999999999 578888 9999999999999999999999999998777
Q ss_pred ccccc-h-hhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecC----CCC------------CCC
Q 026995 87 VKFGE-A-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPL------------GEG 148 (229)
Q Consensus 87 ~~f~~-~-~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~----~~~------------g~~ 148 (229)
+.+.+ + .|++.+. +...+..+|++++. .++++|+++||++|.+|+.+ +.. ...
T Consensus 128 ~~~~~~p~~w~~~g~-ip~aG~~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~ 198 (276)
T 2wsc_3 128 LIPQETALPWFRTGF-IPPAGTYNYWADSY--------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGS 198 (276)
T ss_dssp CCCCSSCCSSSSCCC-C-----CCCSCCCC--------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCC
T ss_pred cccccCcchhhhhhc-ccchhHHHHhccch--------HHHHHHHHHHHHHHHhhhcccccCCccccccccccccccccc
Confidence 65432 2 3877543 33344445665543 24567888999999987542 111 112
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCccccccc
Q 026995 149 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 224 (229)
Q Consensus 149 ~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~ 224 (229)
.+..+|||+ ||||+|.+++++++++|.+|||||||||+||+|+++||++||++|++||.+|+++|++|||+++...
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 245799998 9999999888889999999999999999999999999999999999999999999999999987653
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.7e-53 Score=378.77 Aligned_cols=193 Identities=43% Similarity=0.836 Sum_probs=128.5
Q ss_pred CcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccc
Q 026995 12 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE 91 (229)
Q Consensus 12 ~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~ 91 (229)
.+|+++|++|++ + .++|+||+|++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|+. ..
T Consensus 58 ~~~~~~r~~wlp-g-~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~-~~ 134 (269)
T 2wsc_2 58 TVAEPDRPLWFP-G-STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL-NT 134 (269)
T ss_dssp --------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS-SC
T ss_pred cccCCCcccccC-C-CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc-cC
Confidence 369999999994 5 78999999999999999999999999999999999999999999999999999999877763 34
Q ss_pred hhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCC----CCC----------CCCCCCCCCCC
Q 026995 92 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG----PLG----------EGLDPLYPGGA 157 (229)
Q Consensus 92 ~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~----~~g----------~~~~~~~PGd~ 157 (229)
+.|+++|.. +|+.++. .++++|+++||++|.+|+.+. ..+ ...+..+|||+
T Consensus 135 p~w~~aG~~-------~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~ 199 (269)
T 2wsc_2 135 PSWYTAGEQ-------EYFTDTT--------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGL 199 (269)
T ss_dssp CCCCSTTSS-------SSCCCTT--------SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCS
T ss_pred ccccccchh-------hhhcchH--------HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCc
Confidence 568766532 3433332 245678889999998876431 100 12245799999
Q ss_pred -CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhh-hhhcCCccCCcccccc
Q 026995 158 -FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY-DHIADPVANNAWAYAT 223 (229)
Q Consensus 158 -FDPlgl~~-d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~-~~~~~P~~~~~~~~~~ 223 (229)
||||||.+ ++++++++|.+||||||||||||+|+++|+.+||++|++||. +|++|| +|||+++..
T Consensus 200 ~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~ 267 (269)
T 2wsc_2 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFT 267 (269)
T ss_dssp SCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSC
T ss_pred ccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhcc
Confidence 99999975 677789999999999999999999999999999999999999 999999 999998764
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=2.4e-53 Score=374.92 Aligned_cols=189 Identities=37% Similarity=0.684 Sum_probs=123.8
Q ss_pred CcCCC-CCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCcccc
Q 026995 12 IWYGP-DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 90 (229)
Q Consensus 12 ~~~~~-~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~ 90 (229)
.||++ +|++|++ + .+.|+||+|++|||+|||||||++|+++++|+|++|||||||||||++|++++|+++..|+. .
T Consensus 46 ~~~~~~~r~~~~p-g-~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~-~ 122 (251)
T 2wsc_4 46 SFKVEAKKGEWLP-G-LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII-N 122 (251)
T ss_dssp -------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-C
T ss_pred cccCcchhhhccC-C-CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-C
Confidence 48888 8999995 5 78999999999999999999999999999999999999999999999999999999887764 3
Q ss_pred chhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecC----CCCC-----C-----CCCCCCCCC
Q 026995 91 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLG-----E-----GLDPLYPGG 156 (229)
Q Consensus 91 ~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~----~~~g-----~-----~~~~~~PGd 156 (229)
.+.|+++|. .+|++++. .++++|+++||++|.+|+.+ ++.+ . ..+..+|||
T Consensus 123 ~p~w~~aG~-------~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg 187 (251)
T 2wsc_4 123 VPKWYAAGK-------EEYFASSS--------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG 187 (251)
T ss_dssp CCCCSCCCS-------SSCSSCSS--------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCC
T ss_pred Cccccccch-------Hhhhccch--------HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCC
Confidence 456877653 23444432 23456777899999876542 1111 1 112358999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccc
Q 026995 157 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 223 (229)
Q Consensus 157 ~FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~ 223 (229)
+||||++.+ ++++|++||||||| ||||+||++|+.+||++|++||.+|+++|++||++++.+
T Consensus 188 ~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 188 IFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp TTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred ccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 999999975 66789999999999 999999999999999999999999999999999999764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=5.2e-52 Score=364.28 Aligned_cols=194 Identities=42% Similarity=0.732 Sum_probs=137.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCccccchhhhh
Q 026995 17 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 96 (229)
Q Consensus 17 ~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~~~~w~~ 96 (229)
.|++|+ |+ .++|+||+|++|||+|||||||++|+++++|||++|||||||||||++|++++|.++.. .|++
T Consensus 44 m~~~w~-P~-~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~-------~~~~ 114 (241)
T 2wsc_1 44 MAAHWM-PG-EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG-------NWVK 114 (241)
T ss_dssp -------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----------
T ss_pred cccccC-CC-CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCC-------cccc
Confidence 356688 56 78999999999999999999999999999999999999999999999999999997642 2443
Q ss_pred cch-hhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 026995 97 AGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 175 (229)
Q Consensus 97 ag~-~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FDPlgl~~d~~~~~~~~~ 175 (229)
++. ..++++...|+++|. .++.++.++++|+++||++|.+|..+. +..++.+||+.|||||+.+|+++++++|.
T Consensus 115 a~~~~~~~~g~a~~~~~~~--~~~~~~~i~~iq~l~ig~~E~~r~~~~---~~~~~~yPgg~fDPlgl~~~~~~~~~~r~ 189 (241)
T 2wsc_1 115 AQEWAALPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKLEELKV 189 (241)
T ss_dssp -CCCCSCSSCSSCCSSSCS--SSSSHHHHHHHHHHHTHHHHHHHTSCC---SSCCSSSCSCCSCSSSCSCSSSSCCCSCT
T ss_pred ccchhccCCcchhhhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCcccccccccchhHHHHHHH
Confidence 321 123334445555542 233456677889999999999886532 11245789999999999998888999999
Q ss_pred HHHhhhhHHHHHHHHHHHHH-hhcCCcchhhhhhhhcCCccCCccccccc
Q 026995 176 KELKNGRLAMFSMFGFFVQA-IVTGKGPIENLYDHIADPVANNAWAYATN 224 (229)
Q Consensus 176 ~ELkNGRLAMlai~G~v~qe-~itG~gpl~~l~~~~~~P~~~~~~~~~~~ 224 (229)
+|||||||||+|++|+++|+ .+||++|+++|.+|++||++|||+++.+-
T Consensus 190 ~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 190 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp THHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred hhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 99999999999999999999 58999999999999999999999986653
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.53 E-value=8.1e-15 Score=127.87 Aligned_cols=52 Identities=27% Similarity=0.511 Sum_probs=48.2
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 199 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG 199 (229)
.+++..|||+ ||||||++|+++++++|++||||||+||+|++|++++|+++.
T Consensus 35 ~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 35 YLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp TCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 3567899999 999999999999999999999999999999999999999764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.45 E-value=4.4e-15 Score=130.87 Aligned_cols=55 Identities=42% Similarity=0.709 Sum_probs=39.0
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 026995 149 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 203 (229)
Q Consensus 149 ~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl 203 (229)
+++.+|||+ ||||||++|+++++++|.+||+|||+||+|++|+++||++++.+++
T Consensus 66 l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 66 LTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ---------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred cCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 456789999 9999999999999999999999999999999999999999998765
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.45 E-value=7.1e-15 Score=130.62 Aligned_cols=55 Identities=38% Similarity=0.616 Sum_probs=36.0
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 026995 149 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 203 (229)
Q Consensus 149 ~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl 203 (229)
+++..|||+ ||||||.+|+++++++|++||||||+||+|++|+++||++++.+.+
T Consensus 77 L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 77 LDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp -----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred ccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 456789999 9999999999999999999999999999999999999999876543
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.41 E-value=5e-14 Score=123.32 Aligned_cols=52 Identities=33% Similarity=0.512 Sum_probs=28.8
Q ss_pred CCCCCCCCCC-CCCCCCCCChH-------------------------------------------HHHHHHHHHHhhhhH
Q 026995 148 GLDPLYPGGA-FDPLGLADDPD-------------------------------------------QFAELKVKELKNGRL 183 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~-------------------------------------------~~~~~~~~ELkNGRL 183 (229)
.+|+..|||+ ||||+|++++| .++++|+.||+|||+
T Consensus 23 ~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRw 102 (243)
T 3pl9_A 23 YLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRW 102 (243)
T ss_dssp -----------------------------------------------------------------CCHHHHHHHHHHHHH
T ss_pred cccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchh
Confidence 3467799999 99999998876 268999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 026995 184 AMFSMFGFFVQAIVTG 199 (229)
Q Consensus 184 AMlai~G~v~qe~itG 199 (229)
||+|++|++++|+++|
T Consensus 103 AMLAvlG~lvpE~l~g 118 (243)
T 3pl9_A 103 AMLATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhHHhhcC
Confidence 9999999999999876
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.36 E-value=6.4e-14 Score=122.78 Aligned_cols=52 Identities=37% Similarity=0.525 Sum_probs=45.5
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 026995 148 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 199 (229)
Q Consensus 148 ~~~~~~PGd~-FDPlgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG 199 (229)
.+++..|||+ |||+||++|+++++++|++||||||+||+|++|+++||+++.
T Consensus 57 ~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 57 YLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp ----CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 3466789999 999999999999999999999999999999999999999753
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.31 E-value=2.7e-13 Score=120.82 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=44.0
Q ss_pred CCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCc
Q 026995 34 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 87 (229)
Q Consensus 34 ~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~ 87 (229)
+..+|||.+|||+||++++++++++|.+||||||+||+|++|+++++.++..|.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 253 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 253 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCh
Confidence 456899999999999988888999999999999999999999999999886553
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=28.45 E-value=32 Score=19.20 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=11.4
Q ss_pred hHHHhhhHHHHHhhh
Q 026995 52 PETFAKNRELEVIHS 66 (229)
Q Consensus 52 ~~~~~~~r~aElkHG 66 (229)
++-+..+|++|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345778999999854
Done!