Query 026996
Match_columns 229
No_of_seqs 373 out of 2512
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.2E-36 2.5E-41 247.5 8.2 160 62-227 2-181 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 2.4E-36 5.2E-41 251.3 8.7 161 63-229 4-177 (248)
3 COG1125 OpuBA ABC-type proline 100.0 2.6E-34 5.7E-39 238.7 9.4 159 63-227 2-180 (309)
4 COG3839 MalK ABC-type sugar tr 100.0 8.3E-34 1.8E-38 247.7 8.3 161 61-227 2-178 (338)
5 COG1131 CcmA ABC-type multidru 100.0 8.1E-33 1.8E-37 240.0 11.6 160 62-227 4-181 (293)
6 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.3E-33 1.6E-37 232.7 10.0 164 61-228 3-185 (254)
7 COG1136 SalX ABC-type antimicr 100.0 1.2E-32 2.5E-37 228.3 10.4 146 77-228 27-188 (226)
8 COG1135 AbcC ABC-type metal io 100.0 6.2E-33 1.3E-37 236.2 8.6 145 78-228 29-187 (339)
9 COG3842 PotA ABC-type spermidi 100.0 2.7E-33 5.8E-38 245.7 6.3 161 61-227 4-181 (352)
10 COG2884 FtsE Predicted ATPase 100.0 3.6E-32 7.8E-37 217.2 11.5 160 63-228 2-183 (223)
11 COG3638 ABC-type phosphate/pho 100.0 2.5E-32 5.3E-37 224.8 8.3 161 62-228 3-193 (258)
12 COG1120 FepC ABC-type cobalami 100.0 4.2E-32 9.2E-37 229.0 8.8 159 63-227 3-183 (258)
13 COG4555 NatA ABC-type Na+ tran 100.0 7.5E-32 1.6E-36 217.2 8.8 159 63-227 2-178 (245)
14 COG1127 Ttg2A ABC-type transpo 100.0 8E-32 1.7E-36 222.3 8.8 162 60-227 6-190 (263)
15 COG1124 DppF ABC-type dipeptid 100.0 1.7E-31 3.7E-36 220.9 9.2 146 77-227 29-186 (252)
16 PRK13536 nodulation factor exp 100.0 3.9E-31 8.5E-36 233.8 11.1 162 60-227 39-217 (340)
17 COG1122 CbiO ABC-type cobalt t 100.0 5.6E-31 1.2E-35 221.1 9.9 161 63-228 4-184 (235)
18 COG1118 CysA ABC-type sulfate/ 100.0 5.2E-31 1.1E-35 224.1 9.3 158 64-227 4-182 (345)
19 PRK13537 nodulation ABC transp 100.0 6.4E-31 1.4E-35 229.5 10.1 160 62-227 7-183 (306)
20 COG1117 PstB ABC-type phosphat 100.0 2.5E-30 5.5E-35 210.1 10.3 161 61-228 6-195 (253)
21 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-30 2.5E-35 232.1 9.1 159 63-227 4-179 (356)
22 cd03265 ABC_DrrA DrrA is the A 100.0 1.9E-30 4E-35 216.2 9.4 157 65-227 3-176 (220)
23 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.7E-30 5.8E-35 214.8 10.0 145 77-227 26-185 (218)
24 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.7E-30 7.9E-35 214.4 10.8 145 77-227 26-176 (220)
25 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-30 5E-35 229.9 9.8 160 62-227 4-179 (353)
26 PRK11432 fbpC ferric transport 100.0 2.4E-30 5.2E-35 229.6 9.8 160 62-227 6-181 (351)
27 cd03259 ABC_Carb_Solutes_like 100.0 3E-30 6.4E-35 213.9 9.7 157 65-227 3-175 (213)
28 TIGR01288 nodI ATP-binding ABC 100.0 3.9E-30 8.4E-35 224.3 10.1 160 62-227 4-180 (303)
29 TIGR00960 3a0501s02 Type II (G 100.0 2.8E-30 6E-35 214.5 8.6 145 77-227 25-183 (216)
30 cd03261 ABC_Org_Solvent_Resist 100.0 4.7E-30 1E-34 215.8 9.4 157 65-227 3-181 (235)
31 TIGR02314 ABC_MetN D-methionin 100.0 5.1E-30 1.1E-34 226.7 9.9 159 63-227 2-185 (343)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 4.8E-30 1E-34 228.5 9.3 159 63-227 6-182 (362)
33 cd03269 ABC_putative_ATPase Th 100.0 8.4E-30 1.8E-34 210.7 10.0 145 77-227 22-173 (210)
34 PRK11000 maltose/maltodextrin 100.0 5.9E-30 1.3E-34 228.7 9.7 159 63-227 4-178 (369)
35 cd03225 ABC_cobalt_CbiO_domain 100.0 1E-29 2.2E-34 210.3 10.2 145 77-227 23-179 (211)
36 COG4525 TauB ABC-type taurine 100.0 6.8E-30 1.5E-34 205.2 8.8 146 78-229 28-179 (259)
37 cd03226 ABC_cobalt_CbiO_domain 100.0 1.4E-29 3.1E-34 208.7 10.9 141 77-227 22-171 (205)
38 cd03263 ABC_subfamily_A The AB 100.0 1E-29 2.2E-34 211.6 9.8 145 77-227 24-178 (220)
39 TIGR03608 L_ocin_972_ABC putat 100.0 1.3E-29 2.9E-34 208.7 10.5 146 76-227 19-179 (206)
40 TIGR02673 FtsE cell division A 100.0 9.1E-30 2E-34 211.0 9.4 145 77-227 24-182 (214)
41 cd03266 ABC_NatA_sodium_export 100.0 8E-30 1.7E-34 211.9 9.0 145 77-227 27-181 (218)
42 TIGR01188 drrA daunorubicin re 100.0 1.4E-29 3E-34 220.8 10.9 146 76-227 14-169 (302)
43 PRK11248 tauB taurine transpor 100.0 1.4E-29 3E-34 215.8 10.6 158 64-227 3-173 (255)
44 PRK09452 potA putrescine/sperm 100.0 6.9E-30 1.5E-34 228.3 9.1 160 62-227 14-189 (375)
45 COG3840 ThiQ ABC-type thiamine 100.0 5.3E-30 1.2E-34 203.7 7.2 158 65-228 4-175 (231)
46 COG4152 ABC-type uncharacteriz 100.0 7.5E-30 1.6E-34 211.0 8.3 160 62-227 2-175 (300)
47 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-29 2.5E-34 221.2 9.9 159 63-227 3-178 (301)
48 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-29 2.8E-34 209.9 9.7 157 65-227 3-175 (213)
49 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-29 3.1E-34 210.8 9.9 145 77-227 27-186 (221)
50 cd03235 ABC_Metallic_Cations A 100.0 1.6E-29 3.5E-34 209.5 10.1 147 77-227 21-177 (213)
51 cd03218 ABC_YhbG The ABC trans 100.0 1.8E-29 3.9E-34 211.7 9.9 157 65-227 3-178 (232)
52 PRK11607 potG putrescine trans 100.0 1.5E-29 3.3E-34 226.3 9.8 161 60-226 17-193 (377)
53 cd03258 ABC_MetN_methionine_tr 100.0 2.3E-29 5E-34 211.2 10.3 145 77-227 27-185 (233)
54 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-29 4.4E-34 212.2 9.9 157 65-227 4-177 (236)
55 PRK13637 cbiO cobalt transport 100.0 1.7E-29 3.8E-34 218.6 9.8 146 77-227 29-189 (287)
56 PRK11153 metN DL-methionine tr 100.0 2.1E-29 4.5E-34 223.2 10.4 158 64-227 3-185 (343)
57 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.3E-29 1.4E-33 213.3 12.9 158 64-227 26-205 (269)
58 COG1137 YhbG ABC-type (unclass 100.0 3.9E-30 8.4E-35 207.1 4.9 160 62-227 4-184 (243)
59 PRK11629 lolD lipoprotein tran 100.0 2.7E-29 5.8E-34 211.0 10.2 159 63-227 6-190 (233)
60 cd03292 ABC_FtsE_transporter F 100.0 1.9E-29 4.1E-34 209.0 8.9 145 77-227 23-181 (214)
61 cd03296 ABC_CysA_sulfate_impor 100.0 2.1E-29 4.6E-34 212.4 9.2 159 63-227 3-181 (239)
62 cd03264 ABC_drug_resistance_li 100.0 2.8E-29 6.1E-34 207.7 9.5 144 77-227 22-175 (211)
63 PRK10908 cell division protein 100.0 2.7E-29 5.9E-34 209.5 9.3 145 77-227 24-182 (222)
64 TIGR01186 proV glycine betaine 100.0 4.4E-29 9.6E-34 222.1 11.2 146 76-227 14-174 (363)
65 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.2E-29 9E-34 211.0 10.3 145 77-227 23-180 (242)
66 cd03262 ABC_HisP_GlnQ_permease 100.0 3.2E-29 6.8E-34 207.5 9.4 145 77-227 22-180 (213)
67 cd03219 ABC_Mj1267_LivG_branch 100.0 3.3E-29 7.1E-34 210.6 9.7 145 77-227 22-188 (236)
68 cd03268 ABC_BcrA_bacitracin_re 100.0 4.7E-29 1E-33 205.9 10.4 153 65-227 3-171 (208)
69 PRK10584 putative ABC transpor 100.0 4.5E-29 9.8E-34 208.8 10.2 159 63-227 7-191 (228)
70 PRK10851 sulfate/thiosulfate t 100.0 2.6E-29 5.7E-34 223.2 9.2 159 63-227 3-181 (353)
71 TIGR03410 urea_trans_UrtE urea 100.0 4.8E-29 1E-33 208.9 9.7 154 65-227 3-176 (230)
72 cd03224 ABC_TM1139_LivF_branch 100.0 4.2E-29 9.1E-34 208.0 9.3 155 65-227 3-177 (222)
73 PRK11831 putative ABC transpor 100.0 6.8E-29 1.5E-33 213.0 10.3 162 60-227 5-188 (269)
74 COG0410 LivF ABC-type branched 100.0 7E-29 1.5E-33 204.0 9.8 160 62-227 3-181 (237)
75 PRK13634 cbiO cobalt transport 100.0 5.9E-29 1.3E-33 215.7 9.8 146 77-227 29-190 (290)
76 PRK13538 cytochrome c biogenes 100.0 7.2E-29 1.6E-33 204.5 9.8 154 65-227 4-174 (204)
77 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.7E-29 1.5E-33 205.5 9.5 146 76-227 19-173 (211)
78 PRK10070 glycine betaine trans 100.0 1.7E-28 3.7E-33 220.7 12.8 162 60-227 26-209 (400)
79 PRK09536 btuD corrinoid ABC tr 100.0 4.5E-29 9.7E-34 224.6 9.1 161 62-228 3-185 (402)
80 cd03257 ABC_NikE_OppD_transpor 100.0 1.3E-28 2.8E-33 205.8 11.0 147 77-227 27-190 (228)
81 PRK13641 cbiO cobalt transport 100.0 8.2E-29 1.8E-33 214.4 10.2 160 63-227 3-190 (287)
82 TIGR02315 ABC_phnC phosphonate 100.0 5.4E-29 1.2E-33 210.1 8.8 157 65-227 4-190 (243)
83 cd03256 ABC_PhnC_transporter A 100.0 9.7E-29 2.1E-33 208.2 10.3 157 65-227 3-189 (241)
84 PRK13638 cbiO cobalt transport 100.0 8.7E-29 1.9E-33 212.5 9.7 158 64-227 3-181 (271)
85 PRK13651 cobalt transporter AT 100.0 8.5E-29 1.9E-33 216.0 9.7 146 77-227 29-210 (305)
86 TIGR01166 cbiO cobalt transpor 100.0 1.7E-28 3.8E-33 200.0 10.7 146 76-227 13-172 (190)
87 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-28 2.6E-33 210.3 10.0 156 60-227 10-178 (257)
88 TIGR01277 thiQ thiamine ABC tr 100.0 2.7E-28 5.9E-33 202.3 11.4 146 76-227 19-173 (213)
89 PRK13539 cytochrome c biogenes 100.0 1.7E-28 3.6E-33 202.8 9.8 155 63-227 3-172 (207)
90 PRK13643 cbiO cobalt transport 100.0 1.1E-28 2.4E-33 213.7 9.1 146 77-227 28-189 (288)
91 PRK11264 putative amino-acid A 100.0 2E-28 4.4E-33 207.5 10.4 159 63-227 4-189 (250)
92 PRK11124 artP arginine transpo 100.0 1.6E-28 3.5E-33 207.3 9.7 159 63-227 3-186 (242)
93 TIGR01189 ccmA heme ABC export 100.0 2.2E-28 4.9E-33 200.6 10.3 141 77-227 22-172 (198)
94 COG0411 LivG ABC-type branched 100.0 6.3E-29 1.4E-33 205.8 7.0 160 62-227 4-194 (250)
95 COG1134 TagH ABC-type polysacc 100.0 1.1E-28 2.4E-33 204.5 8.4 144 76-228 48-193 (249)
96 cd03231 ABC_CcmA_heme_exporter 100.0 2.1E-28 4.6E-33 201.4 9.6 151 65-227 3-170 (201)
97 PRK09493 glnQ glutamine ABC tr 100.0 2.3E-28 5E-33 206.1 9.9 157 65-227 4-181 (240)
98 PRK10895 lipopolysaccharide AB 100.0 1.7E-28 3.8E-33 207.0 9.1 159 63-227 4-182 (241)
99 PRK13646 cbiO cobalt transport 100.0 1.7E-28 3.6E-33 212.4 9.2 146 77-227 29-190 (286)
100 TIGR03415 ABC_choXWV_ATP choli 100.0 6.8E-28 1.5E-32 215.6 13.1 158 64-227 26-209 (382)
101 PRK13548 hmuV hemin importer A 100.0 2.4E-28 5.1E-33 208.5 9.7 159 63-227 3-185 (258)
102 PRK13650 cbiO cobalt transport 100.0 1.9E-28 4.2E-33 211.3 9.2 160 63-227 5-185 (279)
103 PRK13647 cbiO cobalt transport 100.0 1.8E-28 4E-33 210.9 9.1 160 63-227 5-183 (274)
104 TIGR00972 3a0107s01c2 phosphat 100.0 3.4E-28 7.4E-33 206.0 10.5 157 64-227 3-189 (247)
105 PRK13636 cbiO cobalt transport 100.0 2.6E-28 5.7E-33 210.9 9.8 161 62-227 5-186 (283)
106 cd03260 ABC_PstB_phosphate_tra 100.0 3.6E-28 7.9E-33 203.2 10.4 159 65-227 3-186 (227)
107 PRK14247 phosphate ABC transpo 100.0 3.9E-28 8.5E-33 205.9 10.6 159 63-227 4-191 (250)
108 PRK15079 oligopeptide ABC tran 100.0 2.7E-28 6E-33 215.0 10.0 147 77-227 43-206 (331)
109 PRK13644 cbiO cobalt transport 100.0 2.5E-28 5.4E-33 210.1 9.3 159 64-227 3-181 (274)
110 COG4175 ProV ABC-type proline/ 100.0 7.6E-29 1.7E-33 211.5 6.0 143 76-224 49-206 (386)
111 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.6E-28 9.9E-33 202.6 10.6 157 62-227 22-187 (224)
112 PRK10247 putative ABC transpor 100.0 5.8E-28 1.3E-32 202.0 11.2 157 62-227 7-182 (225)
113 PRK13543 cytochrome c biogenes 100.0 4.2E-28 9E-33 201.5 10.2 158 61-227 10-182 (214)
114 PRK10771 thiQ thiamine transpo 100.0 3.5E-28 7.5E-33 204.1 9.6 157 64-227 3-174 (232)
115 TIGR02324 CP_lyasePhnL phospho 100.0 5.9E-28 1.3E-32 201.5 10.9 145 77-227 30-194 (224)
116 TIGR03411 urea_trans_UrtD urea 99.9 5.1E-28 1.1E-32 204.2 10.5 159 63-227 3-188 (242)
117 PRK13652 cbiO cobalt transport 99.9 5E-28 1.1E-32 208.5 10.5 160 63-227 4-182 (277)
118 PRK13645 cbiO cobalt transport 99.9 3.1E-28 6.7E-33 211.0 9.2 160 63-227 7-195 (289)
119 PRK14242 phosphate transporter 99.9 7E-28 1.5E-32 204.7 11.2 161 63-227 7-194 (253)
120 cd03267 ABC_NatA_like Similar 99.9 8.4E-28 1.8E-32 202.5 11.6 146 77-227 43-198 (236)
121 PRK11701 phnK phosphonate C-P 99.9 6.7E-28 1.5E-32 205.5 11.0 162 62-227 6-196 (258)
122 PRK11308 dppF dipeptide transp 99.9 5.7E-28 1.2E-32 212.7 10.8 147 77-227 37-199 (327)
123 PRK13649 cbiO cobalt transport 99.9 4.3E-28 9.3E-33 209.1 9.8 145 77-227 29-190 (280)
124 TIGR02769 nickel_nikE nickel i 99.9 4.6E-28 9.9E-33 207.4 9.8 148 76-227 32-195 (265)
125 PRK13631 cbiO cobalt transport 99.9 5.8E-28 1.3E-32 212.1 10.6 164 59-227 18-221 (320)
126 PRK13540 cytochrome c biogenes 99.9 7.9E-28 1.7E-32 197.8 10.7 153 64-227 3-172 (200)
127 PRK11022 dppD dipeptide transp 99.9 6.4E-28 1.4E-32 212.3 10.8 161 63-227 4-198 (326)
128 TIGR01978 sufC FeS assembly AT 99.9 6.8E-28 1.5E-32 203.3 10.5 159 65-227 3-189 (243)
129 PRK10619 histidine/lysine/argi 99.9 5.9E-28 1.3E-32 205.7 10.3 159 63-227 6-197 (257)
130 PRK13632 cbiO cobalt transport 99.9 4.3E-28 9.3E-33 208.2 9.5 160 62-227 7-187 (271)
131 TIGR02142 modC_ABC molybdenum 99.9 7.3E-28 1.6E-32 214.2 11.0 144 76-227 18-176 (354)
132 cd03297 ABC_ModC_molybdenum_tr 99.9 7.4E-28 1.6E-32 199.7 10.3 152 67-227 5-176 (214)
133 PRK15112 antimicrobial peptide 99.9 7.2E-28 1.6E-32 206.4 10.4 147 77-227 35-194 (267)
134 TIGR03740 galliderm_ABC gallid 99.9 9.9E-28 2.1E-32 200.2 10.6 141 77-227 22-169 (223)
135 PRK14241 phosphate transporter 99.9 9.6E-28 2.1E-32 204.5 10.7 159 63-227 5-193 (258)
136 COG4598 HisP ABC-type histidin 99.9 4.3E-28 9.3E-33 192.7 7.8 160 61-226 5-196 (256)
137 PRK13635 cbiO cobalt transport 99.9 5.1E-28 1.1E-32 208.7 9.0 160 63-227 6-185 (279)
138 PRK10744 pstB phosphate transp 99.9 8.9E-28 1.9E-32 205.0 10.4 159 62-227 13-201 (260)
139 PRK13541 cytochrome c biogenes 99.9 1.3E-27 2.7E-32 195.8 10.6 140 77-227 22-168 (195)
140 PRK11144 modC molybdate transp 99.9 9.5E-28 2.1E-32 213.3 10.7 149 67-227 5-173 (352)
141 TIGR02323 CP_lyasePhnK phospho 99.9 1.1E-27 2.3E-32 203.6 10.5 161 63-227 4-193 (253)
142 TIGR03005 ectoine_ehuA ectoine 99.9 8.4E-28 1.8E-32 204.2 9.7 157 65-227 3-191 (252)
143 TIGR01184 ntrCD nitrate transp 99.9 2E-27 4.3E-32 199.5 11.7 146 76-227 6-159 (230)
144 PRK11231 fecE iron-dicitrate t 99.9 8.6E-28 1.9E-32 204.5 9.6 159 63-227 3-183 (255)
145 TIGR02770 nickel_nikD nickel i 99.9 1.8E-27 4E-32 199.6 11.4 148 76-227 7-170 (230)
146 PRK14267 phosphate ABC transpo 99.9 1.3E-27 2.7E-32 203.1 10.4 159 63-227 5-194 (253)
147 PRK11300 livG leucine/isoleuci 99.9 9.5E-28 2.1E-32 204.0 9.6 160 62-227 5-198 (255)
148 PRK14254 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 205.9 11.3 161 59-227 36-225 (285)
149 PRK14235 phosphate transporter 99.9 1.6E-27 3.4E-32 204.3 10.8 160 61-227 18-208 (267)
150 PRK13633 cobalt transporter AT 99.9 9.4E-28 2E-32 207.1 9.5 159 63-227 5-189 (280)
151 PRK11614 livF leucine/isoleuci 99.9 7.3E-28 1.6E-32 202.7 8.5 157 63-227 6-182 (237)
152 PRK13639 cbiO cobalt transport 99.9 1.1E-27 2.3E-32 206.3 9.5 158 64-227 3-182 (275)
153 PRK10575 iron-hydroxamate tran 99.9 8.6E-28 1.9E-32 205.7 8.8 160 62-227 11-192 (265)
154 COG4181 Predicted ABC-type tra 99.9 5.1E-27 1.1E-31 185.1 12.4 161 62-228 6-192 (228)
155 PRK14259 phosphate ABC transpo 99.9 1.5E-27 3.2E-32 204.8 10.1 158 62-227 13-199 (269)
156 PRK14273 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 202.3 10.6 159 62-227 7-195 (254)
157 PRK14268 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 202.9 10.6 159 62-227 12-199 (258)
158 PRK14250 phosphate ABC transpo 99.9 1.3E-27 2.8E-32 201.9 9.4 154 63-227 4-176 (241)
159 PRK15093 antimicrobial peptide 99.9 1.9E-27 4.1E-32 209.7 10.7 164 63-227 4-203 (330)
160 PRK13640 cbiO cobalt transport 99.9 1.3E-27 2.8E-32 206.5 9.2 160 63-227 6-188 (282)
161 TIGR03873 F420-0_ABC_ATP propo 99.9 1.5E-27 3.3E-32 203.1 9.4 158 64-227 3-182 (256)
162 cd03300 ABC_PotA_N PotA is an 99.9 2.3E-27 5E-32 199.2 10.3 145 77-227 22-175 (232)
163 PRK09544 znuC high-affinity zi 99.9 2.3E-27 5E-32 201.7 10.3 152 63-227 5-165 (251)
164 PRK10418 nikD nickel transport 99.9 3.6E-27 7.8E-32 200.6 11.5 159 63-227 5-185 (254)
165 PRK10762 D-ribose transporter 99.9 9.3E-28 2E-32 222.4 8.5 160 62-227 4-186 (501)
166 PRK14256 phosphate ABC transpo 99.9 3.6E-27 7.8E-32 200.3 11.3 159 63-227 5-193 (252)
167 PRK13648 cbiO cobalt transport 99.9 1.8E-27 3.8E-32 204.2 9.4 160 63-227 8-187 (269)
168 TIGR02982 heterocyst_DevA ABC 99.9 1.6E-27 3.6E-32 198.5 8.8 146 76-227 26-186 (220)
169 PRK14248 phosphate ABC transpo 99.9 3.2E-27 7E-32 202.4 10.8 164 60-227 19-209 (268)
170 cd03299 ABC_ModC_like Archeal 99.9 3.5E-27 7.5E-32 198.6 10.7 146 76-227 20-174 (235)
171 PRK13549 xylose transporter AT 99.9 1.7E-27 3.7E-32 220.9 9.0 160 62-227 5-188 (506)
172 TIGR00968 3a0106s01 sulfate AB 99.9 3.2E-27 6.8E-32 199.1 9.8 145 77-227 22-175 (237)
173 TIGR03269 met_CoM_red_A2 methy 99.9 2.3E-27 5E-32 220.6 9.9 160 65-227 3-213 (520)
174 PRK14274 phosphate ABC transpo 99.9 4.9E-27 1.1E-31 200.3 11.0 160 61-227 11-200 (259)
175 PRK14237 phosphate transporter 99.9 4.7E-27 1E-31 201.4 10.9 160 61-227 19-208 (267)
176 PRK14269 phosphate ABC transpo 99.9 4.6E-27 9.9E-32 199.0 10.6 161 63-227 3-187 (246)
177 PRK09984 phosphonate/organopho 99.9 3.6E-27 7.9E-32 201.4 9.7 160 62-227 4-197 (262)
178 PRK13642 cbiO cobalt transport 99.9 3E-27 6.5E-32 203.6 9.1 160 63-227 5-185 (277)
179 PRK10261 glutathione transport 99.9 3.6E-27 7.8E-32 223.6 10.5 162 62-227 12-213 (623)
180 PRK10253 iron-enterobactin tra 99.9 2.2E-27 4.8E-32 203.2 8.1 161 61-227 6-188 (265)
181 PRK14245 phosphate ABC transpo 99.9 7.4E-27 1.6E-31 198.1 11.0 161 63-227 4-191 (250)
182 PRK10419 nikE nickel transport 99.9 5.9E-27 1.3E-31 200.9 10.5 147 77-227 34-196 (268)
183 PRK14246 phosphate ABC transpo 99.9 6.6E-27 1.4E-31 199.5 10.7 163 59-227 7-198 (257)
184 PRK09473 oppD oligopeptide tra 99.9 6.2E-27 1.3E-31 206.4 10.7 163 61-227 11-206 (330)
185 PRK14251 phosphate ABC transpo 99.9 7E-27 1.5E-31 198.3 10.7 158 63-227 5-192 (251)
186 PRK14239 phosphate transporter 99.9 7.7E-27 1.7E-31 198.1 10.8 161 62-227 5-193 (252)
187 cd03223 ABCD_peroxisomal_ALDP 99.9 4.9E-27 1.1E-31 187.9 8.9 115 76-227 22-136 (166)
188 PRK14270 phosphate ABC transpo 99.9 8.1E-27 1.8E-31 198.0 10.7 158 63-227 5-192 (251)
189 PRK14243 phosphate transporter 99.9 8.4E-27 1.8E-31 199.5 10.8 161 62-227 10-196 (264)
190 PRK14275 phosphate ABC transpo 99.9 6.8E-27 1.5E-31 202.3 10.4 165 59-227 36-227 (286)
191 PRK14240 phosphate transporter 99.9 8.5E-27 1.8E-31 197.7 10.6 158 63-227 4-191 (250)
192 PRK10261 glutathione transport 99.9 5.6E-27 1.2E-31 222.2 10.6 163 61-227 312-508 (623)
193 PRK14262 phosphate ABC transpo 99.9 7.3E-27 1.6E-31 198.1 10.2 158 63-227 4-191 (250)
194 PRK09700 D-allose transporter 99.9 3E-27 6.5E-32 219.4 8.5 160 62-227 5-190 (510)
195 PRK10636 putative ABC transpor 99.9 4E-27 8.6E-32 223.7 9.4 159 57-227 307-475 (638)
196 cd03233 ABC_PDR_domain1 The pl 99.9 6.7E-27 1.5E-31 192.7 9.4 124 77-227 29-163 (202)
197 PRK15439 autoinducer 2 ABC tra 99.9 4.3E-27 9.2E-32 218.4 9.1 156 62-227 11-185 (510)
198 TIGR03771 anch_rpt_ABC anchore 99.9 1.7E-26 3.6E-31 193.0 11.8 147 77-227 2-158 (223)
199 PRK14238 phosphate transporter 99.9 1.3E-26 2.8E-31 199.1 11.3 159 62-227 24-212 (271)
200 PRK14272 phosphate ABC transpo 99.9 9.7E-27 2.1E-31 197.5 10.4 159 63-227 5-193 (252)
201 cd03234 ABCG_White The White s 99.9 1.7E-26 3.6E-31 193.2 11.7 146 76-227 28-188 (226)
202 COG1123 ATPase components of v 99.9 1.3E-26 2.9E-31 211.8 11.6 148 78-228 314-475 (539)
203 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.4E-26 5.2E-31 194.9 12.1 137 78-227 22-160 (246)
204 PRK14253 phosphate ABC transpo 99.9 1.5E-26 3.3E-31 196.0 10.7 158 63-227 4-190 (249)
205 cd03215 ABC_Carb_Monos_II This 99.9 1.1E-26 2.5E-31 188.2 9.5 131 63-227 5-149 (182)
206 TIGR03269 met_CoM_red_A2 methy 99.9 1.1E-26 2.5E-31 216.0 10.6 161 60-227 277-472 (520)
207 PRK14249 phosphate ABC transpo 99.9 1.9E-26 4E-31 195.8 11.0 158 63-227 5-192 (251)
208 PRK15056 manganese/iron transp 99.9 7.3E-27 1.6E-31 200.7 8.6 161 63-227 7-187 (272)
209 COG4161 ArtP ABC-type arginine 99.9 1.6E-26 3.4E-31 181.1 9.4 159 64-228 4-187 (242)
210 PRK11288 araG L-arabinose tran 99.9 6.4E-27 1.4E-31 216.8 8.5 160 62-227 4-185 (501)
211 PRK14260 phosphate ABC transpo 99.9 1.8E-26 4E-31 196.8 10.6 159 62-227 7-195 (259)
212 PRK15134 microcin C ABC transp 99.9 1.3E-26 2.8E-31 216.1 10.4 161 63-227 6-201 (529)
213 PRK15064 ABC transporter ATP-b 99.9 1.8E-26 3.9E-31 215.2 11.3 157 60-227 317-483 (530)
214 PRK14244 phosphate ABC transpo 99.9 1.7E-26 3.6E-31 196.1 10.1 156 65-227 8-194 (251)
215 PRK14255 phosphate ABC transpo 99.9 2.7E-26 5.9E-31 194.8 11.4 161 62-227 5-193 (252)
216 PRK11147 ABC transporter ATPas 99.9 1.3E-26 2.9E-31 220.2 10.4 162 57-227 314-485 (635)
217 TIGR02633 xylG D-xylose ABC tr 99.9 8E-27 1.7E-31 216.0 8.6 158 64-227 3-186 (500)
218 cd03230 ABC_DR_subfamily_A Thi 99.9 1.1E-26 2.5E-31 186.8 8.4 112 76-227 21-140 (173)
219 cd03229 ABC_Class3 This class 99.9 6.9E-27 1.5E-31 188.9 7.1 114 76-227 21-145 (178)
220 PRK10982 galactose/methyl gala 99.9 1E-26 2.2E-31 215.0 9.1 145 77-227 20-179 (491)
221 PRK13549 xylose transporter AT 99.9 1.3E-26 2.9E-31 214.9 9.8 163 61-227 258-450 (506)
222 PRK11819 putative ABC transpor 99.9 2.7E-26 6E-31 215.0 11.8 158 62-227 6-208 (556)
223 PRK10938 putative molybdenum t 99.9 1E-26 2.2E-31 214.9 8.6 154 63-227 4-180 (490)
224 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2E-26 4.4E-31 215.8 10.2 159 60-227 320-488 (552)
225 PRK11819 putative ABC transpor 99.9 2.6E-26 5.6E-31 215.2 10.9 159 60-227 322-490 (556)
226 PRK09700 D-allose transporter 99.9 1.7E-26 3.8E-31 214.3 9.6 162 62-227 265-454 (510)
227 PRK13547 hmuV hemin importer A 99.9 1.6E-26 3.5E-31 198.7 8.7 158 64-227 3-199 (272)
228 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.6E-26 7.8E-31 214.1 11.8 158 62-227 4-206 (552)
229 PRK15064 ABC transporter ATP-b 99.9 3E-26 6.5E-31 213.6 11.1 157 63-227 2-200 (530)
230 cd03252 ABCC_Hemolysin The ABC 99.9 2.4E-26 5.1E-31 193.4 9.4 138 77-227 24-183 (237)
231 PRK14265 phosphate ABC transpo 99.9 3.9E-26 8.6E-31 196.4 10.9 158 62-227 20-206 (274)
232 cd03245 ABCC_bacteriocin_expor 99.9 1.1E-26 2.3E-31 193.4 6.9 138 77-227 26-185 (220)
233 cd03246 ABCC_Protease_Secretio 99.9 1.9E-26 4.1E-31 185.5 8.1 118 76-227 23-141 (173)
234 PRK14258 phosphate ABC transpo 99.9 3.8E-26 8.2E-31 195.2 10.4 159 62-227 7-195 (261)
235 PRK14271 phosphate ABC transpo 99.9 3E-26 6.4E-31 197.4 9.9 159 62-227 21-208 (276)
236 PRK14261 phosphate ABC transpo 99.9 4.1E-26 8.9E-31 193.9 10.5 161 62-227 6-194 (253)
237 COG4133 CcmA ABC-type transpor 99.9 7.1E-26 1.5E-30 180.8 11.1 146 76-227 23-175 (209)
238 cd03228 ABCC_MRP_Like The MRP 99.9 1.7E-26 3.6E-31 185.5 7.3 118 76-227 23-141 (171)
239 PRK14236 phosphate transporter 99.9 4.4E-26 9.5E-31 195.9 10.4 159 62-227 25-213 (272)
240 PRK14263 phosphate ABC transpo 99.9 4.6E-26 9.9E-31 194.8 10.4 157 64-228 10-195 (261)
241 CHL00131 ycf16 sulfate ABC tra 99.9 6.5E-26 1.4E-30 192.4 11.1 160 62-227 7-196 (252)
242 PRK15134 microcin C ABC transp 99.9 4.7E-26 1E-30 212.3 10.8 163 60-227 273-470 (529)
243 cd03216 ABC_Carb_Monos_I This 99.9 2E-26 4.3E-31 183.9 7.1 118 65-227 3-127 (163)
244 cd03247 ABCC_cytochrome_bd The 99.9 2.3E-26 4.9E-31 185.8 7.5 120 76-227 23-143 (178)
245 PRK13409 putative ATPase RIL; 99.9 5E-26 1.1E-30 214.1 10.9 153 60-227 338-498 (590)
246 PRK15177 Vi polysaccharide exp 99.9 4.9E-26 1.1E-30 189.1 9.6 140 76-226 8-148 (213)
247 cd03232 ABC_PDR_domain2 The pl 99.9 4.2E-26 9.1E-31 186.5 8.9 120 77-227 29-153 (192)
248 PRK09580 sufC cysteine desulfu 99.9 8.3E-26 1.8E-30 191.2 10.9 160 64-227 3-190 (248)
249 TIGR01257 rim_protein retinal- 99.9 3.4E-26 7.3E-31 235.3 10.1 162 60-227 1935-2115(2272)
250 COG4619 ABC-type uncharacteriz 99.9 3.6E-26 7.8E-31 179.8 7.9 142 77-227 25-178 (223)
251 cd03369 ABCC_NFT1 Domain 2 of 99.9 7.1E-26 1.5E-30 186.9 10.1 146 63-227 7-170 (207)
252 cd03254 ABCC_Glucan_exporter_l 99.9 4E-26 8.6E-31 191.0 8.8 138 77-227 25-184 (229)
253 cd03248 ABCC_TAP TAP, the Tran 99.9 1.3E-26 2.8E-31 193.7 5.5 158 62-227 11-195 (226)
254 cd03251 ABCC_MsbA MsbA is an e 99.9 1.4E-26 3.1E-31 194.3 5.7 138 77-227 24-183 (234)
255 PRK13546 teichoic acids export 99.9 1.2E-25 2.6E-30 192.5 11.5 142 76-227 45-188 (264)
256 TIGR02633 xylG D-xylose ABC tr 99.9 4.3E-26 9.4E-31 211.2 8.9 164 61-227 256-448 (500)
257 cd03244 ABCC_MRP_domain2 Domai 99.9 5.3E-26 1.1E-30 189.3 8.5 138 76-227 25-184 (221)
258 PRK10636 putative ABC transpor 99.9 9.6E-26 2.1E-30 214.3 11.3 156 63-227 2-194 (638)
259 PRK14266 phosphate ABC transpo 99.9 1.2E-25 2.5E-30 190.7 10.6 161 63-227 4-191 (250)
260 cd03222 ABC_RNaseL_inhibitor T 99.9 5.1E-26 1.1E-30 183.8 7.9 96 77-227 21-116 (177)
261 cd03250 ABCC_MRP_domain1 Domai 99.9 7.7E-26 1.7E-30 186.3 9.1 129 77-223 27-168 (204)
262 PRK14252 phosphate ABC transpo 99.9 1.7E-25 3.6E-30 191.5 10.9 158 63-227 17-206 (265)
263 cd03253 ABCC_ATM1_transporter 99.9 2.7E-26 5.9E-31 192.8 5.7 139 76-227 22-182 (236)
264 COG0444 DppD ABC-type dipeptid 99.9 1.9E-25 4.1E-30 192.0 10.8 153 76-228 26-199 (316)
265 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.5E-26 5.4E-31 193.4 5.2 139 76-227 24-184 (238)
266 COG4604 CeuD ABC-type enteroch 99.9 3.3E-26 7E-31 184.2 5.5 160 63-227 2-180 (252)
267 TIGR01257 rim_protein retinal- 99.9 9.4E-26 2E-30 232.0 10.3 162 60-227 926-1106(2272)
268 COG4148 ModC ABC-type molybdat 99.9 1.1E-25 2.4E-30 189.5 8.8 138 78-227 21-173 (352)
269 PRK10762 D-ribose transporter 99.9 9.5E-26 2.1E-30 209.0 9.3 162 62-227 257-440 (501)
270 COG2274 SunT ABC-type bacterio 99.9 3.1E-26 6.7E-31 217.9 6.1 156 60-228 469-655 (709)
271 cd03213 ABCG_EPDR ABCG transpo 99.9 1.2E-25 2.6E-30 184.1 8.7 121 76-227 30-156 (194)
272 cd03214 ABC_Iron-Siderophores_ 99.9 1.1E-25 2.3E-30 182.3 8.1 120 77-227 21-142 (180)
273 PRK14264 phosphate ABC transpo 99.9 3.4E-25 7.4E-30 193.4 11.9 161 60-227 43-245 (305)
274 PRK11147 ABC transporter ATPas 99.9 2.4E-25 5.1E-30 211.6 11.8 158 62-227 3-201 (635)
275 PRK13545 tagH teichoic acids e 99.9 1.5E-25 3.2E-30 205.7 9.5 141 77-227 46-188 (549)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 9.1E-26 2E-30 176.6 6.8 95 76-227 21-115 (144)
277 COG0488 Uup ATPase components 99.9 2.3E-25 5.1E-30 206.0 10.7 158 57-227 316-484 (530)
278 PRK10938 putative molybdenum t 99.9 9.3E-26 2E-30 208.5 7.9 164 60-227 258-446 (490)
279 KOG0058 Peptide exporter, ABC 99.9 1.7E-25 3.6E-30 208.1 9.5 157 58-227 461-649 (716)
280 cd03290 ABCC_SUR1_N The SUR do 99.9 4.2E-25 9.1E-30 183.7 10.8 134 76-223 22-181 (218)
281 PRK03695 vitamin B12-transport 99.9 3.8E-25 8.3E-30 187.7 10.6 147 73-227 13-178 (248)
282 TIGR02868 CydC thiol reductant 99.9 1.9E-25 4.2E-30 208.0 9.6 153 62-227 334-515 (529)
283 PRK11288 araG L-arabinose tran 99.9 2.3E-25 5E-30 206.4 9.7 162 62-227 257-441 (501)
284 TIGR01187 potA spermidine/putr 99.9 2.6E-25 5.7E-30 195.7 9.5 136 86-227 1-145 (325)
285 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.8E-25 3.9E-30 183.9 7.8 118 77-227 22-149 (200)
286 PLN03211 ABC transporter G-25; 99.9 4.7E-25 1E-29 209.8 11.6 156 65-227 71-251 (659)
287 COG1129 MglA ABC-type sugar tr 99.9 2.1E-25 4.5E-30 202.8 8.3 161 61-227 7-190 (500)
288 COG4586 ABC-type uncharacteriz 99.9 2.1E-25 4.7E-30 187.1 7.5 148 76-228 45-202 (325)
289 cd03236 ABC_RNaseL_inhibitor_d 99.9 7.3E-25 1.6E-29 186.8 10.9 138 78-227 23-184 (255)
290 PRK10982 galactose/methyl gala 99.9 3E-25 6.5E-30 205.1 8.9 163 61-227 249-436 (491)
291 PRK15439 autoinducer 2 ABC tra 99.9 7.8E-25 1.7E-29 203.3 11.0 162 62-227 268-448 (510)
292 COG4608 AppF ABC-type oligopep 99.9 4.9E-25 1.1E-29 185.8 8.5 125 69-227 26-154 (268)
293 PRK14257 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 191.8 10.9 163 61-227 79-270 (329)
294 COG0488 Uup ATPase components 99.9 1.1E-24 2.3E-29 201.6 11.0 158 62-227 3-198 (530)
295 PRK11176 lipid transporter ATP 99.9 1.1E-24 2.3E-29 205.1 10.1 154 62-227 341-525 (582)
296 COG3845 ABC-type uncharacteriz 99.9 7.8E-25 1.7E-29 196.3 8.2 161 61-227 3-185 (501)
297 COG1123 ATPase components of v 99.9 1.5E-24 3.3E-29 198.4 10.2 148 77-228 31-200 (539)
298 KOG0055 Multidrug/pheromone ex 99.9 2.5E-25 5.5E-30 217.0 5.4 156 59-227 347-534 (1228)
299 PRK13409 putative ATPase RIL; 99.9 1.3E-24 2.9E-29 204.5 9.9 148 68-227 79-257 (590)
300 COG4559 ABC-type hemin transpo 99.9 5.7E-25 1.2E-29 178.8 6.4 144 78-227 24-186 (259)
301 COG4778 PhnL ABC-type phosphon 99.9 8E-25 1.7E-29 172.6 7.0 146 77-228 33-198 (235)
302 PLN03073 ABC transporter F fam 99.9 3.2E-24 6.9E-29 205.6 11.9 156 60-227 506-672 (718)
303 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.1E-25 6.7E-30 212.6 4.5 152 62-227 451-633 (686)
304 cd03288 ABCC_SUR2 The SUR doma 99.9 3.2E-24 7E-29 182.8 10.0 152 62-227 19-201 (257)
305 COG1119 ModF ABC-type molybden 99.9 5.4E-25 1.2E-29 182.5 5.0 164 61-228 30-217 (257)
306 COG4167 SapF ABC-type antimicr 99.9 5.6E-24 1.2E-28 169.7 10.2 148 76-226 34-193 (267)
307 PRK11174 cysteine/glutathione 99.9 6.6E-25 1.4E-29 206.8 5.5 151 63-227 350-530 (588)
308 PRK10535 macrolide transporter 99.9 3.8E-24 8.2E-29 203.7 10.6 159 63-227 5-189 (648)
309 PRK11160 cysteine/glutathione 99.9 1.7E-24 3.7E-29 203.6 7.9 153 62-227 338-520 (574)
310 COG4107 PhnK ABC-type phosphon 99.9 8E-24 1.7E-28 167.7 10.3 162 62-227 6-196 (258)
311 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.9E-25 1.1E-29 211.9 4.1 153 62-227 477-660 (710)
312 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.5E-24 7.6E-29 184.4 8.7 137 76-227 25-183 (275)
313 TIGR00954 3a01203 Peroxysomal 99.9 3.4E-24 7.4E-29 204.3 9.3 157 62-227 451-627 (659)
314 TIGR02203 MsbA_lipidA lipid A 99.9 5.5E-24 1.2E-28 199.8 10.3 154 62-227 330-514 (571)
315 TIGR02857 CydD thiol reductant 99.9 8.2E-25 1.8E-29 203.8 4.7 153 62-227 320-503 (529)
316 TIGR01193 bacteriocin_ABC ABC- 99.9 6.6E-25 1.4E-29 210.9 4.1 154 62-227 473-656 (708)
317 cd03291 ABCC_CFTR1 The CFTR su 99.9 8.7E-24 1.9E-28 182.6 10.1 149 58-224 35-201 (282)
318 COG4172 ABC-type uncharacteriz 99.9 1.2E-23 2.6E-28 184.8 11.0 148 76-227 308-471 (534)
319 PRK10790 putative multidrug tr 99.9 3.5E-24 7.7E-29 202.1 8.1 151 63-227 341-521 (592)
320 TIGR03375 type_I_sec_LssB type 99.9 1.2E-24 2.6E-29 208.7 4.0 153 62-227 463-646 (694)
321 KOG0057 Mitochondrial Fe/S clu 99.9 2.1E-24 4.6E-29 195.3 5.2 154 60-227 349-532 (591)
322 COG1132 MdlB ABC-type multidru 99.9 1.2E-24 2.7E-29 204.3 3.7 151 63-226 329-509 (567)
323 TIGR00958 3a01208 Conjugate Tr 99.9 2.5E-24 5.5E-29 207.0 5.9 149 62-223 478-658 (711)
324 PRK13657 cyclic beta-1,2-gluca 99.9 2.1E-24 4.5E-29 203.5 5.0 153 62-227 334-516 (588)
325 PRK10522 multidrug transporter 99.9 7.3E-24 1.6E-28 198.3 8.1 148 62-226 322-493 (547)
326 TIGR01842 type_I_sec_PrtD type 99.9 2.9E-24 6.2E-29 200.9 5.2 153 62-227 316-499 (544)
327 TIGR01192 chvA glucan exporter 99.9 6.9E-24 1.5E-28 199.9 7.3 153 62-227 334-516 (585)
328 COG4988 CydD ABC-type transpor 99.9 1.1E-23 2.4E-28 192.4 6.8 150 65-227 323-501 (559)
329 cd03238 ABC_UvrA The excision 99.9 6.2E-23 1.3E-27 165.6 10.0 114 76-227 16-134 (176)
330 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.3E-23 2.9E-28 196.9 6.9 147 62-224 337-512 (555)
331 PRK10789 putative multidrug tr 99.9 3.5E-23 7.6E-28 194.6 9.4 152 63-227 314-496 (569)
332 TIGR02204 MsbA_rel ABC transpo 99.9 1E-23 2.2E-28 198.2 5.7 153 62-227 337-521 (576)
333 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.3E-23 7.1E-28 163.9 7.4 106 76-227 20-125 (157)
334 COG4987 CydC ABC-type transpor 99.9 3.5E-23 7.7E-28 187.2 8.5 155 62-228 336-520 (573)
335 TIGR01846 type_I_sec_HlyB type 99.9 4.1E-23 8.8E-28 198.2 8.6 153 62-227 455-638 (694)
336 PF00005 ABC_tran: ABC transpo 99.9 8.1E-24 1.8E-28 163.1 2.9 116 77-211 7-137 (137)
337 TIGR00956 3a01205 Pleiotropic 99.9 8.1E-23 1.8E-27 207.7 10.3 164 61-227 758-947 (1394)
338 KOG0055 Multidrug/pheromone ex 99.9 5.7E-23 1.2E-27 200.6 8.2 155 60-227 985-1171(1228)
339 TIGR00955 3a01204 The Eye Pigm 99.9 1.4E-22 3.1E-27 192.1 10.5 145 76-227 46-211 (617)
340 PTZ00265 multidrug resistance 99.9 1.7E-23 3.7E-28 213.1 4.5 153 62-227 1165-1403(1466)
341 PTZ00265 multidrug resistance 99.9 7.5E-23 1.6E-27 208.5 9.1 159 62-227 382-624 (1466)
342 COG4674 Uncharacterized ABC-ty 99.9 3.3E-23 7.1E-28 166.7 4.0 160 62-227 5-192 (249)
343 COG1101 PhnK ABC-type uncharac 99.9 1.1E-22 2.5E-27 165.7 7.2 148 76-227 27-193 (263)
344 KOG0927 Predicted transporter 99.9 2.3E-22 4.9E-27 181.8 9.5 159 56-227 383-554 (614)
345 PLN03073 ABC transporter F fam 99.9 4.5E-22 9.7E-27 190.8 10.4 154 59-227 174-389 (718)
346 KOG0059 Lipid exporter ABCA1 a 99.9 4.3E-22 9.3E-27 195.1 9.9 163 59-227 561-743 (885)
347 COG4136 ABC-type uncharacteriz 99.9 3.4E-22 7.4E-27 154.9 5.7 147 77-227 24-179 (213)
348 TIGR00956 3a01205 Pleiotropic 99.9 2.1E-21 4.6E-26 197.4 12.5 149 76-227 82-254 (1394)
349 PLN03140 ABC transporter G fam 99.9 1.8E-21 3.8E-26 198.0 11.5 144 77-227 902-1064(1470)
350 PLN03232 ABC transporter C fam 99.9 4.1E-22 8.9E-27 204.0 6.4 152 62-227 1234-1416(1495)
351 PLN03130 ABC transporter C fam 99.9 6.4E-22 1.4E-26 203.3 7.5 152 62-227 1237-1419(1622)
352 PLN03140 ABC transporter G fam 99.9 3.8E-21 8.2E-26 195.6 13.0 145 77-227 187-381 (1470)
353 cd03278 ABC_SMC_barmotin Barmo 99.9 4.5E-21 9.7E-26 157.6 10.7 126 76-227 18-162 (197)
354 cd03270 ABC_UvrA_I The excisio 99.9 7.9E-21 1.7E-25 159.2 12.4 62 166-227 118-184 (226)
355 PTZ00243 ABC transporter; Prov 99.8 3.2E-21 6.9E-26 197.8 10.2 152 62-227 1308-1491(1560)
356 TIGR00957 MRP_assoc_pro multi 99.8 3.6E-21 7.9E-26 197.4 10.0 152 62-227 1284-1466(1522)
357 KOG0061 Transporter, ABC super 99.8 2E-20 4.2E-25 176.9 12.2 147 77-227 52-215 (613)
358 COG4172 ABC-type uncharacteriz 99.8 1.6E-20 3.5E-25 165.2 10.6 151 77-228 32-203 (534)
359 COG4618 ArpD ABC-type protease 99.8 5.9E-21 1.3E-25 171.8 8.0 138 76-226 357-516 (580)
360 cd03272 ABC_SMC3_euk Eukaryoti 99.8 2.1E-20 4.5E-25 157.7 10.1 52 176-227 152-207 (243)
361 TIGR00957 MRP_assoc_pro multi 99.8 1.1E-20 2.4E-25 193.8 9.9 147 62-226 636-804 (1522)
362 PLN03232 ABC transporter C fam 99.8 1.3E-20 2.8E-25 193.1 9.6 145 62-223 614-781 (1495)
363 TIGR01271 CFTR_protein cystic 99.8 1.3E-20 2.9E-25 192.8 9.3 151 62-227 1217-1398(1490)
364 KOG0056 Heavy metal exporter H 99.8 3.4E-21 7.3E-26 172.7 4.1 157 60-228 535-720 (790)
365 PLN03130 ABC transporter C fam 99.8 8.8E-21 1.9E-25 194.9 7.5 144 62-223 614-781 (1622)
366 COG0396 sufC Cysteine desulfur 99.8 4E-20 8.7E-25 152.2 9.3 150 76-227 25-189 (251)
367 TIGR01271 CFTR_protein cystic 99.8 1.7E-20 3.8E-25 192.0 8.8 134 76-224 447-590 (1490)
368 cd03273 ABC_SMC2_euk Eukaryoti 99.8 4.6E-20 1E-24 156.7 8.8 155 70-227 12-215 (251)
369 PTZ00243 ABC transporter; Prov 99.8 7.7E-20 1.7E-24 187.7 11.9 130 76-223 681-823 (1560)
370 COG1245 Predicted ATPase, RNas 99.8 8.4E-20 1.8E-24 162.6 10.0 151 60-225 340-498 (591)
371 COG4615 PvdE ABC-type sideroph 99.8 1.4E-19 3.1E-24 158.9 7.4 155 60-224 320-490 (546)
372 KOG0062 ATPase component of AB 99.8 1.7E-19 3.8E-24 162.4 7.5 154 60-226 78-242 (582)
373 KOG0066 eIF2-interacting prote 99.8 2.9E-19 6.3E-24 158.8 8.7 164 50-227 574-749 (807)
374 cd03279 ABC_sbcCD SbcCD and ot 99.8 5.5E-19 1.2E-23 146.7 7.8 130 80-227 27-178 (213)
375 COG4178 ABC-type uncharacteriz 99.8 2.8E-18 6.1E-23 159.2 12.4 139 77-228 415-561 (604)
376 cd03240 ABC_Rad50 The catalyti 99.8 1E-18 2.2E-23 144.3 8.5 130 77-227 19-167 (204)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.8 9.3E-20 2E-24 151.4 1.3 53 175-227 120-176 (212)
378 COG5265 ATM1 ABC-type transpor 99.8 2.1E-19 4.6E-24 158.7 3.2 154 62-227 262-444 (497)
379 KOG0927 Predicted transporter 99.8 5.2E-19 1.1E-23 160.2 5.8 160 60-226 73-265 (614)
380 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.1E-17 2.4E-22 137.5 11.9 130 78-227 19-158 (198)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.7 2E-18 4.4E-23 146.4 5.2 49 179-227 152-204 (247)
382 cd03271 ABC_UvrA_II The excisi 99.7 6.1E-17 1.3E-21 138.3 9.3 65 163-227 147-217 (261)
383 KOG0065 Pleiotropic drug resis 99.7 1.5E-16 3.2E-21 156.4 9.2 146 78-227 814-975 (1391)
384 COG1245 Predicted ATPase, RNas 99.7 1.8E-17 4E-22 147.8 2.6 156 68-227 80-258 (591)
385 COG4138 BtuD ABC-type cobalami 99.7 4.8E-17 1E-21 129.3 3.4 139 78-228 22-178 (248)
386 KOG0054 Multidrug resistance-a 99.6 4.4E-16 9.5E-21 155.5 9.0 130 76-223 542-684 (1381)
387 KOG0054 Multidrug resistance-a 99.6 1.4E-16 3.1E-21 158.9 5.2 152 62-227 1138-1320(1381)
388 KOG0060 Long-chain acyl-CoA tr 99.6 1.2E-15 2.5E-20 139.5 9.8 144 78-227 458-615 (659)
389 COG1129 MglA ABC-type sugar tr 99.6 4.7E-15 1E-19 135.4 9.2 164 59-228 260-447 (500)
390 cd03239 ABC_SMC_head The struc 99.5 7.9E-15 1.7E-19 118.7 5.9 45 183-227 95-143 (178)
391 cd03277 ABC_SMC5_euk Eukaryoti 99.5 5.6E-14 1.2E-18 116.8 10.3 51 177-227 121-175 (213)
392 PRK00635 excinuclease ABC subu 99.5 4.2E-14 9.1E-19 144.7 11.1 61 167-227 791-857 (1809)
393 KOG2355 Predicted ABC-type tra 99.5 2.6E-14 5.7E-19 116.4 7.6 165 59-227 10-192 (291)
394 TIGR00554 panK_bact pantothena 99.5 2.6E-14 5.6E-19 123.6 7.9 135 79-229 60-201 (290)
395 cd02025 PanK Pantothenate kina 99.5 3.9E-14 8.5E-19 118.3 8.1 131 83-229 1-133 (220)
396 KOG0062 ATPase component of AB 99.5 4.7E-14 1E-18 127.6 8.8 136 78-226 387-526 (582)
397 cd03280 ABC_MutS2 MutS2 homolo 99.5 2.7E-14 5.9E-19 117.4 6.5 45 177-222 86-130 (200)
398 PRK00349 uvrA excinuclease ABC 99.5 1.1E-13 2.4E-18 135.8 11.7 63 165-227 810-878 (943)
399 cd03227 ABC_Class2 ABC-type Cl 99.5 5.1E-14 1.1E-18 112.1 7.1 45 183-227 78-126 (162)
400 KOG0064 Peroxisomal long-chain 99.5 2.6E-14 5.6E-19 129.7 5.6 139 78-226 505-656 (728)
401 COG2401 ABC-type ATPase fused 99.5 1.5E-13 3.3E-18 121.8 10.2 152 64-227 379-552 (593)
402 TIGR00630 uvra excinuclease AB 99.4 6.4E-13 1.4E-17 130.3 11.1 64 165-228 808-877 (924)
403 KOG0063 RNAse L inhibitor, ABC 99.4 4.2E-13 9.1E-18 119.4 7.2 133 79-225 365-499 (592)
404 cd03243 ABC_MutS_homologs The 99.4 3.7E-13 7.9E-18 110.8 6.4 107 77-223 25-131 (202)
405 cd03283 ABC_MutS-like MutS-lik 99.4 8.8E-13 1.9E-17 108.5 6.8 29 77-105 21-49 (199)
406 cd03241 ABC_RecN RecN ATPase i 99.4 1.8E-12 3.9E-17 111.7 8.4 46 182-227 170-219 (276)
407 cd02023 UMPK Uridine monophosp 99.4 1.8E-12 3.9E-17 106.1 8.0 111 83-215 1-113 (198)
408 KOG2702 Predicted panthothenat 99.3 2E-12 4.3E-17 106.8 7.2 146 78-229 116-263 (323)
409 COG4170 SapD ABC-type antimicr 99.3 2E-12 4.4E-17 105.9 5.1 154 70-227 21-203 (330)
410 PRK09270 nucleoside triphospha 99.3 7.2E-12 1.6E-16 105.1 8.1 131 79-227 31-163 (229)
411 TIGR00235 udk uridine kinase. 99.3 4.2E-12 9E-17 104.9 6.3 117 79-215 4-120 (207)
412 KOG0066 eIF2-interacting prote 99.3 3E-12 6.4E-17 114.5 4.2 60 163-222 390-452 (807)
413 PTZ00301 uridine kinase; Provi 99.3 1.6E-11 3.5E-16 101.8 7.9 128 82-229 4-131 (210)
414 COG0572 Udk Uridine kinase [Nu 99.3 1.9E-11 4.2E-16 100.9 8.3 126 79-228 6-131 (218)
415 PRK05480 uridine/cytidine kina 99.2 3.5E-11 7.6E-16 99.4 9.5 117 79-215 4-120 (209)
416 cd03285 ABC_MSH2_euk MutS2 hom 99.2 7.2E-12 1.6E-16 104.8 4.0 101 78-220 27-132 (222)
417 KOG0065 Pleiotropic drug resis 99.2 5.1E-11 1.1E-15 118.0 10.3 147 77-226 137-304 (1391)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.2 2.1E-11 4.6E-16 100.7 6.1 98 78-217 26-125 (204)
419 PRK05439 pantothenate kinase; 99.2 4.4E-11 9.5E-16 104.4 6.8 134 80-229 85-221 (311)
420 cd03242 ABC_RecF RecF is a rec 99.2 9.2E-11 2E-15 100.8 7.8 47 180-226 181-236 (270)
421 smart00534 MUTSac ATPase domai 99.1 5.1E-11 1.1E-15 96.8 5.7 44 177-221 56-99 (185)
422 COG1072 CoaA Panthothenate kin 99.1 8E-11 1.7E-15 99.9 5.9 135 78-228 79-214 (283)
423 KOG0063 RNAse L inhibitor, ABC 99.1 7.4E-11 1.6E-15 105.2 5.2 156 68-226 80-257 (592)
424 PLN02796 D-glycerate 3-kinase 99.1 2.5E-10 5.5E-15 100.5 8.4 120 83-216 102-234 (347)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.1 2E-10 4.4E-15 95.4 7.0 32 186-217 94-125 (213)
426 PF02463 SMC_N: RecF/RecN/SMC 99.1 1.3E-10 2.9E-15 96.4 5.8 47 181-227 135-185 (220)
427 COG3845 ABC-type uncharacteriz 99.1 6.5E-10 1.4E-14 100.7 9.7 165 59-227 254-448 (501)
428 TIGR01069 mutS2 MutS2 family p 99.1 1.9E-10 4.1E-15 111.6 5.8 109 78-226 318-429 (771)
429 cd02024 NRK1 Nicotinamide ribo 99.0 7E-10 1.5E-14 90.4 8.2 122 83-229 1-135 (187)
430 PTZ00132 GTP-binding nuclear p 99.0 2.8E-10 6E-15 94.2 5.8 50 179-228 147-203 (215)
431 cd02026 PRK Phosphoribulokinas 99.0 1.1E-09 2.5E-14 94.2 9.1 114 83-227 1-118 (273)
432 PLN03046 D-glycerate 3-kinase; 99.0 2E-09 4.3E-14 96.8 9.9 118 81-217 212-347 (460)
433 PF00485 PRK: Phosphoribulokin 99.0 1.8E-10 4E-15 94.1 2.9 127 83-228 1-130 (194)
434 PLN02318 phosphoribulokinase/u 99.0 7E-10 1.5E-14 103.4 6.3 116 82-229 66-181 (656)
435 PLN02348 phosphoribulokinase 98.9 3.1E-09 6.6E-14 95.1 6.6 137 80-228 48-186 (395)
436 cd01128 rho_factor Transcripti 98.9 8.2E-09 1.8E-13 87.7 8.3 36 70-105 5-40 (249)
437 cd03284 ABC_MutS1 MutS1 homolo 98.9 7E-09 1.5E-13 86.4 7.6 24 82-105 31-54 (216)
438 PRK06995 flhF flagellar biosyn 98.9 2E-08 4.3E-13 92.5 11.0 119 77-214 252-380 (484)
439 cd02028 UMPK_like Uridine mono 98.9 4E-09 8.6E-14 85.4 5.6 120 83-227 1-120 (179)
440 PRK07429 phosphoribulokinase; 98.8 8.9E-09 1.9E-13 90.8 7.9 116 82-228 9-128 (327)
441 PRK08533 flagellar accessory p 98.8 1.6E-08 3.4E-13 85.1 8.6 41 63-105 8-49 (230)
442 TIGR02858 spore_III_AA stage I 98.8 1.2E-08 2.5E-13 87.8 7.6 31 82-115 112-142 (270)
443 cd03287 ABC_MSH3_euk MutS3 hom 98.8 1.1E-08 2.4E-13 85.6 6.5 39 78-118 28-66 (222)
444 COG0178 UvrA Excinuclease ATPa 98.8 3.3E-08 7.1E-13 94.4 9.8 53 176-228 816-871 (935)
445 PRK00409 recombination and DNA 98.8 4.7E-09 1E-13 102.1 3.5 44 178-222 386-429 (782)
446 cd02029 PRK_like Phosphoribulo 98.7 7.9E-08 1.7E-12 82.1 9.8 127 83-228 1-144 (277)
447 PRK06793 fliI flagellum-specif 98.7 3.5E-08 7.5E-13 89.7 7.0 116 71-224 146-268 (432)
448 TIGR00630 uvra excinuclease AB 98.6 4E-08 8.7E-13 96.9 6.3 53 176-228 481-535 (924)
449 COG3910 Predicted ATPase [Gene 98.6 2.3E-07 5E-12 75.0 9.4 48 179-227 126-173 (233)
450 PRK13695 putative NTPase; Prov 98.6 2.3E-08 5.1E-13 80.2 3.6 46 180-225 76-123 (174)
451 PRK00349 uvrA excinuclease ABC 98.6 3.9E-08 8.5E-13 97.1 5.6 60 168-227 472-536 (943)
452 PRK14721 flhF flagellar biosyn 98.6 1.6E-07 3.5E-12 85.2 8.5 97 77-192 187-285 (420)
453 cd01130 VirB11-like_ATPase Typ 98.6 1.5E-07 3.2E-12 76.5 7.4 35 78-115 22-56 (186)
454 COG4240 Predicted kinase [Gene 98.6 1.1E-07 2.3E-12 79.0 6.1 125 78-215 47-177 (300)
455 smart00382 AAA ATPases associa 98.6 3.1E-07 6.6E-12 68.8 7.7 25 81-105 2-26 (148)
456 PRK15453 phosphoribulokinase; 98.5 1.1E-06 2.3E-11 75.7 10.2 132 80-228 4-150 (290)
457 TIGR03238 dnd_assoc_3 dnd syst 98.5 9.4E-08 2E-12 87.4 3.7 40 70-114 20-60 (504)
458 PF13304 AAA_21: AAA domain; P 98.5 2E-08 4.3E-13 82.7 -0.7 48 180-227 234-284 (303)
459 cd00820 PEPCK_HprK Phosphoenol 98.5 1.2E-07 2.6E-12 70.3 3.4 27 76-102 10-36 (107)
460 PRK00635 excinuclease ABC subu 98.5 2.3E-07 4.9E-12 96.2 6.1 52 176-227 470-523 (1809)
461 cd01124 KaiC KaiC is a circadi 98.4 1.2E-06 2.7E-11 70.3 7.4 51 176-226 65-124 (187)
462 cd03286 ABC_MSH6_euk MutS6 hom 98.3 3.8E-07 8.2E-12 76.1 3.8 28 78-105 27-54 (218)
463 cd01120 RecA-like_NTPases RecA 98.3 1.9E-06 4E-11 66.9 7.4 23 83-105 1-23 (165)
464 PF13555 AAA_29: P-loop contai 98.3 9.5E-07 2.1E-11 58.9 4.3 28 78-105 19-47 (62)
465 PRK06067 flagellar accessory p 98.3 3.1E-06 6.8E-11 71.0 8.6 118 78-224 22-144 (234)
466 PRK09825 idnK D-gluconate kina 98.3 5.6E-07 1.2E-11 72.6 3.8 26 80-105 2-27 (176)
467 PRK07667 uridine kinase; Provi 98.3 1.1E-06 2.4E-11 71.8 5.5 106 81-211 17-130 (193)
468 PRK10078 ribose 1,5-bisphospho 98.3 4.7E-07 1E-11 73.5 3.1 25 81-105 2-26 (186)
469 PRK00300 gmk guanylate kinase; 98.3 8.7E-07 1.9E-11 72.6 4.2 27 79-105 3-29 (205)
470 PRK14722 flhF flagellar biosyn 98.2 1.1E-05 2.3E-10 72.5 10.8 64 77-157 133-196 (374)
471 PRK06696 uridine kinase; Valid 98.2 1.1E-06 2.4E-11 73.4 4.0 26 80-105 21-46 (223)
472 PRK10416 signal recognition pa 98.2 2E-05 4.3E-10 69.4 10.9 27 79-105 112-138 (318)
473 TIGR03015 pepcterm_ATPase puta 98.1 5E-05 1.1E-09 64.6 12.7 28 78-105 39-67 (269)
474 PRK08233 hypothetical protein; 98.1 1.2E-05 2.7E-10 64.2 8.3 26 80-105 2-27 (182)
475 cd01131 PilT Pilus retraction 98.1 1.1E-05 2.4E-10 66.2 7.6 23 83-105 3-25 (198)
476 TIGR02903 spore_lon_C ATP-depe 98.1 2E-05 4.3E-10 75.3 10.0 116 80-227 174-291 (615)
477 PHA02562 46 endonuclease subun 98.1 2.6E-06 5.6E-11 80.2 4.0 49 179-227 465-524 (562)
478 TIGR02322 phosphon_PhnN phosph 98.1 2.8E-06 6.1E-11 68.2 3.6 25 81-105 1-25 (179)
479 PRK07196 fliI flagellum-specif 98.1 1.8E-06 3.9E-11 78.7 2.6 40 70-112 144-183 (434)
480 PRK06002 fliI flagellum-specif 98.1 2E-06 4.4E-11 78.5 2.7 37 76-115 160-196 (450)
481 TIGR03263 guanyl_kin guanylate 98.1 2.6E-06 5.5E-11 68.3 3.0 25 81-105 1-25 (180)
482 cd01876 YihA_EngB The YihA (En 98.1 3.5E-05 7.7E-10 59.6 9.3 45 180-228 120-169 (170)
483 TIGR00618 sbcc exonuclease Sbc 98.0 4.7E-06 1E-10 84.1 4.8 53 175-227 943-1005(1042)
484 PRK14723 flhF flagellar biosyn 98.0 1.6E-05 3.4E-10 77.0 8.1 79 78-173 182-262 (767)
485 cd01136 ATPase_flagellum-secre 98.0 2.7E-06 5.9E-11 74.9 2.5 42 70-114 58-99 (326)
486 PRK10246 exonuclease subunit S 98.0 5.8E-06 1.3E-10 83.4 4.2 53 175-227 942-1002(1047)
487 TIGR00634 recN DNA repair prot 98.0 6.9E-06 1.5E-10 77.7 4.5 47 181-227 439-489 (563)
488 PRK05922 type III secretion sy 98.0 5E-06 1.1E-10 75.8 3.2 41 72-115 148-188 (434)
489 KOG2878 Predicted kinase [Gene 98.0 1.5E-05 3.3E-10 65.2 5.5 128 78-216 24-167 (282)
490 PRK07721 fliI flagellum-specif 98.0 6.3E-06 1.4E-10 75.5 3.6 43 70-115 147-189 (438)
491 TIGR02788 VirB11 P-type DNA tr 97.9 7.7E-06 1.7E-10 71.7 3.5 29 77-105 140-168 (308)
492 PRK10869 recombination and rep 97.9 9.3E-06 2E-10 76.6 4.3 46 182-227 430-479 (553)
493 PRK06731 flhF flagellar biosyn 97.9 0.00014 3.1E-09 62.6 11.1 46 60-105 51-99 (270)
494 PRK08972 fliI flagellum-specif 97.9 6.6E-06 1.4E-10 75.0 2.7 35 71-105 152-186 (444)
495 PRK12727 flagellar biosynthesi 97.9 0.00013 2.8E-09 68.1 11.2 28 78-105 347-374 (559)
496 TIGR01026 fliI_yscN ATPase Fli 97.9 7.6E-06 1.6E-10 75.0 2.7 42 70-114 152-193 (440)
497 cd01125 repA Hexameric Replica 97.9 7.2E-05 1.6E-09 63.0 8.5 25 81-105 1-25 (239)
498 cd01854 YjeQ_engC YjeQ/EngC. 97.9 3E-05 6.4E-10 67.3 6.2 32 81-115 161-192 (287)
499 TIGR02546 III_secr_ATP type II 97.9 8.2E-06 1.8E-10 74.5 2.8 41 71-114 135-175 (422)
500 cd00009 AAA The AAA+ (ATPases 97.9 8.2E-05 1.8E-09 56.0 7.9 26 80-105 18-43 (151)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=247.54 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=133.3
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCc
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~ 124 (229)
.++++++.|+||+..+ |++||+++|+||||||||||||||+++. .|++|++. ++... +.+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHh
Confidence 3577889999998854 7899999999999999999999999999 99999964 44222 346
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHH-hcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
.|.++++.+.+.. +++.+|+..... ..+.+.+...+...+.|+.++. ..+.++.+|||||||||+|||||+++|
T Consensus 79 vGmVFQ~fnLFPH---lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 79 VGMVFQQFNLFPH---LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred cCeeccccccccc---chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 7887766665444 799999776543 4566777777788889997765 467899999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++|||+...++.+.+..
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999998887754
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-36 Score=251.26 Aligned_cols=161 Identities=18% Similarity=0.234 Sum_probs=133.8
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---CCcEEEEeec
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDVATVLPM 131 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~---~~~~g~~i~~ 131 (229)
+.++++++.|+... .|.+||+++|+||||||||||||+|+|+. +|++|++ +.+..+ .++.++++|.
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~---~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE---KPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred EEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCcccCCCCCCEEEEecc
Confidence 45667777777653 38899999999999999999999999999 9999995 444332 5678887776
Q ss_pred CCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC
Q 026996 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~ 209 (229)
+...++ +|+.+|+.+.....+.......+.+.+.++.++. ..+.++.+|||||||||+||||++.+|++|+||||
T Consensus 81 ~~LlPW---~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 DALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred Ccccch---hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 666555 6899999988887776665556678888886665 67899999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHhhC
Q 026996 210 YLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 210 ~~~LD~~~~~~~~~ll~~~~ 229 (229)
|+.||+-.+..+.+.+-..|
T Consensus 158 FgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 158 FGALDALTREELQDELLRLW 177 (248)
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 99999999888888776554
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=238.71 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=137.5
Q ss_pred hhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCcEE
Q 026996 63 TSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~~g 126 (229)
+++++|+|.|++... |+.||+++|+|||||||||+||||++++ .|++|++ +++..+ +.++|
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi---ept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI---EPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc---CCCCceEEECCeecccCCHHHHHHhhh
Confidence 567889999987743 8899999999999999999999999999 9999995 444433 45789
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh----cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~----~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
|++++.+.++. +++.+|+.......++.++....++.+.++.++. +.++++++|||||+||+.+||||+.+|+
T Consensus 79 YviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 79 YVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred hhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence 99998888665 7999999999888888776666777888886665 4578999999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++++||||.+||+-.+.++.+.+..
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHH
Confidence 9999999999999999888877654
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-34 Score=247.72 Aligned_cols=161 Identities=19% Similarity=0.104 Sum_probs=134.0
Q ss_pred cchhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEE
Q 026996 61 NKTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVA 126 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g 126 (229)
..+++++|+|.||+. +.|+.||+++|+||||||||||||+|+|+. .|++|++. ++..+ ...++
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe---~~~~G~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE---EPTSGEILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCCCChhHCCEE
Confidence 346788999999985 238999999999999999999999999999 99999964 44333 23567
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
.+++..-.+ .+ +++++|+.+..+..+.+++....++.++.+.|+. ..+.++.+|||||+|||++|||++.+|+++
T Consensus 79 mVFQ~yALy-Ph--mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~ 155 (338)
T COG3839 79 MVFQNYALY-PH--MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVF 155 (338)
T ss_pred EEeCCcccc-CC--CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEE
Confidence 654433333 22 7999999999999998887778888888887665 467889999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|||++.||...+..++..+..
T Consensus 156 L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 156 LLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred EecCchhHhhHHHHHHHHHHHHH
Confidence 99999999999988888876654
No 5
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.1e-33 Score=240.00 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=133.4
Q ss_pred chhhhhhhhhcC-Cccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------CCcE
Q 026996 62 KTSLKVLCSQRR-EIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------PPDV 125 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------~~~~ 125 (229)
.+++++++|.|+ ++.+ |++|+++||+||||||||||+|+|+|++ .|++|++ +.+... ...+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~---~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL---KPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEEcCEeCccCHHHHHhhe
Confidence 456788999999 4533 8899999999999999999999999999 9999995 333222 3357
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC--CCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
|++.+.+.++.. +|+.+++.+....++.....+...+.++++.++... +.+++.||+|||||+.+|.||+.+|++
T Consensus 81 gy~~~~~~~~~~---lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l 157 (293)
T COG1131 81 GYVPQEPSLYPE---LTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL 157 (293)
T ss_pred EEEccCCCCCcc---ccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 886655554433 899999999988887654455667888999888765 778999999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||||||++||+..+.++++++..
T Consensus 158 liLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 158 LILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.3e-33 Score=232.73 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=128.1
Q ss_pred cchhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----CCcEEE
Q 026996 61 NKTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----PPDVAT 127 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----~~~~g~ 127 (229)
..+++++++..|++. +.|++|++++|+||||||||||+|+|+|++ +|++|++. .+... ...+|+
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll---~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---cCCcceEEEccccccccccCCeEEE
Confidence 346788888888853 238899999999999999999999999999 99999953 33321 245788
Q ss_pred EeecCCccccCccCChhhhHHHHHH-hcCC---CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
+.+...++...+ +++.+.+...+. ..++ ....+.+.+.++++.++. ..++++.+|||||+||+.+||||+.+|
T Consensus 80 VPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 80 VPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence 655454443333 677776655421 1222 234456788889997765 568999999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
++++|||||.++|+..+..+.+++++.
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l 185 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKEL 185 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999764
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=1.2e-32 Score=228.34 Aligned_cols=146 Identities=18% Similarity=0.113 Sum_probs=117.7
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------------CCcEEEEeecCCccccCccCCh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
.|++||+++|+|||||||||||++|.|+. +|++|.+ +.+... ...+|++++..+.... +++
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld---~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~---ltv 100 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLD---KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD---LTV 100 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC---CCH
Confidence 38999999999999999999999999999 9999994 444222 3457886655444333 799
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CC-CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~-~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
.||+.......+............+++.++.. .. .++.+|||||||||++|||++.+|++++.||||..||....++
T Consensus 101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~ 180 (226)
T COG1136 101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180 (226)
T ss_pred HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHH
Confidence 99999877666654433345566777765653 33 6688999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 026996 221 VSSMFDEK 228 (229)
Q Consensus 221 ~~~ll~~~ 228 (229)
+.+++.+.
T Consensus 181 V~~ll~~~ 188 (226)
T COG1136 181 VLELLREL 188 (226)
T ss_pred HHHHHHHH
Confidence 99998653
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=6.2e-33 Score=236.17 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=125.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCChhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDAME 145 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~~ 145 (229)
|++||++||||.||||||||+|||+++. +|++|+++ ++..+ +.++|.+++..+.... .|+.+
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le---~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss---rTV~~ 102 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLINLLE---RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS---RTVFE 102 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc---chHHh
Confidence 8999999999999999999999999999 99999964 44332 4568887766665433 58999
Q ss_pred hHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 146 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
|+.+.....+.+++....++.++++.++. ..+.++.+|||||||||+|||||+.+|+|||.||+|++|||...+.+.+
T Consensus 103 NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~ 182 (339)
T COG1135 103 NVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182 (339)
T ss_pred hhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 99999999998887778888999997765 4578899999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 026996 224 MFDEK 228 (229)
Q Consensus 224 ll~~~ 228 (229)
++...
T Consensus 183 LL~~I 187 (339)
T COG1135 183 LLKDI 187 (339)
T ss_pred HHHHH
Confidence 88653
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.98 E-value=2.7e-33 Score=245.74 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=128.7
Q ss_pred cchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEE
Q 026996 61 NKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVA 126 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g 126 (229)
..+++++|+|+|++... |++||+++|+||||||||||||||+|+. .|++|++. ++..+ ...+|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe---~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE---QPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCCCChhhcccc
Confidence 45778899999997643 8899999999999999999999999999 99999964 44332 34567
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
.+ .|++-.+.+ +++.+|+.+.++...... +....++.++++.++. ..++++.+|||||+|||++||||+.+|++
T Consensus 81 ~V-FQ~YALFPH--ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 81 MV-FQSYALFPH--MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred ee-ecCcccCCC--CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence 74 455544443 899999999988444333 3345677888885554 56889999999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||||++.||...+.+++.-+..
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~ 181 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKE 181 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHH
Confidence 999999999999887777765543
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.98 E-value=3.6e-32 Score=217.20 Aligned_cols=160 Identities=18% Similarity=0.093 Sum_probs=134.7
Q ss_pred hhhhhhhhhcCCcc--------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----------C
Q 026996 63 TSLKVLCSQRREIP--------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----------P 122 (229)
Q Consensus 63 ~~~~~l~~~~~~~~--------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-----------~ 122 (229)
+.+++|+|+|++-+ .|++||++-|+||||||||||+|+|.+.. +|+.|++ +.+..+ +
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e---~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE---RPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh---cCCCceEEECCeecccccccccchhh
Confidence 56788999997553 38999999999999999999999999999 9999995 333322 4
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcC
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
..+|.+ +||.....+ .++++|+.+.....|.+.......+.++++.++.. .+..+.+||||||||++||||++.+
T Consensus 79 R~IGvV-FQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 79 RQIGVV-FQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred heeeeE-eeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 567774 456554443 78999999999999988777778889999977664 4567889999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
|++||.||||..||++...+++++|.+.
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-32 Score=224.82 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=130.4
Q ss_pred chhhhhhhhhc-CCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC-----------
Q 026996 62 KTSLKVLCSQR-REIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK----------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~-~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~----------- 121 (229)
++++++|+|.| +++. .|++||+++|||+||||||||||+|+|+. .|++|+++.++ ..
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~---d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV---DPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc---CCCcceEEecccchhccchHHHHHH
Confidence 56788899999 5552 38999999999999999999999999998 89999965443 22
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHH--------HhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH--------ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~--------~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl 191 (229)
+.++|.++++.+.... +++.+|+...+ ...+++...+...+++.|+.++. ....+..+|||||+|||
T Consensus 80 r~~iGmIfQ~~nLv~r---~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 80 RRDIGMIFQQFNLVPR---LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHhceeEeccCCcccc---cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 3468887766665433 57777765432 34556666677778888997775 45678889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+|||+|+.+|+|+|.|||++.|||...+++++.+...
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999988653
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=4.2e-32 Score=229.04 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=123.2
Q ss_pred hhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCcEE
Q 026996 63 TSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~~g 126 (229)
+++++++.+|+++++ +++|++++|+||||||||||||+|+|++ +|.+|++ +++..+ ....+
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l---~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 456778888887644 8899999999999999999999999999 9999996 444433 33566
Q ss_pred EEeecCCccccCccCChhhhHHHHHHh-cCC---CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g~---~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
+ +.|...... .+++.+.+...+.. .+. ....|.+.+.+.++.++. ..++.+.+||||||||+.+|+|++.+
T Consensus 80 ~-vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 80 Y-VPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred E-eccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 6 444433222 26777776665432 222 223445567777886654 56788999999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++++||||+.||..++.++.+++..
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.5e-32 Score=217.23 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=129.1
Q ss_pred hhhhhhhhhcCCcc--------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEE
Q 026996 63 TSLKVLCSQRREIP--------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~~--------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g 126 (229)
+++.+++|+|++.. .++.|+++||+|+|||||||+||+|++++ .|++|.+. ++-.. +..+|
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL---~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL---IPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc---cCCCceEEEeecccccChHHHhhhcc
Confidence 45566778887753 38899999999999999999999999999 99999953 33222 34567
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
......+++. .+++.||+.++.+.+++.......+..++.+.|+. ..++++..||.||||||++|||++++|+++
T Consensus 79 Vl~~e~glY~---RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 79 VLFGERGLYA---RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred eecCCcChhh---hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE
Confidence 6554444432 38999999999999988776656666667665554 568899999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||+++||....+++.+++..
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=8e-32 Score=222.35 Aligned_cols=162 Identities=16% Similarity=0.187 Sum_probs=127.9
Q ss_pred ccchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC----------
Q 026996 60 QNKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~---------- 121 (229)
...+++++|+++||++.+ |++||+++|+||||||||||+|+|.|++ +|++|++ +.+...
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll---~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC---CCCCCeEEEcCcchhccCHHHHHH
Confidence 456889999999998854 8899999999999999999999999999 9999995 444433
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcC-CCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~a 196 (229)
..+.|.++|....+-. +++.||+.+..+.+. +++....+.+..-++.++.. .++++.+|||||++|+++|||
T Consensus 83 ir~r~GvlFQ~gALFss---ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 83 IRKRMGVLFQQGALFSS---LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHhheeEEeeccccccc---cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 3457876655544322 799999988765443 34443344445555555542 578999999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++++||||++|||.....+.+++..
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~ 190 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRE 190 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHH
Confidence 9999999999999999999888887777654
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=220.89 Aligned_cols=146 Identities=17% Similarity=0.127 Sum_probs=120.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------CcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~--------~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.|.+||++||+|+||||||||.|+|+|+. +|+.|++ +.+.... .....+++||.+...++..++.+.+
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~---~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l 105 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLE---KPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL 105 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhccc---CCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHH
Confidence 38899999999999999999999999999 9999996 4553432 2345667888887777777877777
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
.......+.... ..++.++++.++.. .++++.+|||||+||++|||||+.+|++||+|||++.||...+.++.++
T Consensus 106 ~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Ilnl 183 (252)
T COG1124 106 SEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183 (252)
T ss_pred hhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHH
Confidence 766665554332 33477888877764 5788999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 026996 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+.+
T Consensus 184 L~~ 186 (252)
T COG1124 184 LLE 186 (252)
T ss_pred HHH
Confidence 865
No 16
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=3.9e-31 Score=233.78 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=125.2
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------CCc
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------PPD 124 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------~~~ 124 (229)
..++++++|+|.|++.. .|++|+++||+||||||||||+|+|+|++ +|++|++ ++|... ...
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~---~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT---SPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCceEEEECCEECCcchHHHhcc
Confidence 34688999999998763 38899999999999999999999999999 9999995 344322 234
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+|++.+...++. .+++.+++.+....++.........+.++++.++.. .+.++..||+||+||+++|+|++.+|+
T Consensus 116 ig~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 116 IGVVPQFDNLDL---EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEEEeCCccCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 677544333322 268888887665544432222233445666655543 578899999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+.++.+++.+
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.6e-31 Score=221.07 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=131.1
Q ss_pred hhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCC---------CCCc
Q 026996 63 TSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQV---------KPPD 124 (229)
Q Consensus 63 ~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~---------~~~~ 124 (229)
+++++++..|.+. +.+++|++++|+|+||||||||+++|+|++ +|++|++. ++.. ....
T Consensus 4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl---~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC---cCCCCEEEECCeeccchhhHHHhhcc
Confidence 3445556666443 338999999999999999999999999999 99999963 3322 1466
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+|.+++..+..... -++.+.+.+...+.+.+.+....++.++++.++. ..+.++..|||||||||+||.+++++|+
T Consensus 81 vG~VfQnpd~q~~~--~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 81 VGLVFQNPDDQLFG--PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred eEEEEECccccccc--CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 89877666554443 3788889999899998776566677888886654 4678899999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
++|+||||++||+..++++.+++.+.
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998653
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-31 Score=224.07 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=122.3
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCC----C------CCcEE
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----K------PPDVA 126 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~----~------~~~~g 126 (229)
.+.++.|.|++. ..|+.||.++|.||||||||||||+|+|++ .|+.|.++.++. . ..++|
T Consensus 4 ~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe---~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 4 RINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE---TPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred eehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC---CCCCceEEECCEeccchhccchhhccee
Confidence 344555555544 238899999999999999999999999999 999999654443 1 34678
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCC-C-CCccHHHHHHHHHhhh--hcCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~-~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
.++ |++-.+.+ +++.+|+.+..+.... + ......++.+.++.+. ...+.++.+|||||+||+++|||++..|+
T Consensus 81 fvF-Q~YALF~H--mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVF-QHYALFPH--MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEE-echhhccc--chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 854 45543333 8999999998765532 2 2334556666676443 45689999999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||||||..||...+.+++.++..
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHH
Confidence 9999999999999998888887754
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=6.4e-31 Score=229.53 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=123.9
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVA 126 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g 126 (229)
.+++++++|.|++.. .|++|+++||+||||||||||+|+|+|++ +|++|++. .+... ...+|
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~---~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT---HPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEecccchHHHHhcEE
Confidence 467788888887653 38899999999999999999999999999 99999953 33322 23467
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
++.+...++ ..+++.+++.+....++.........+.++++.++. ..+.++..||+||+||+++|+|++.+|+++
T Consensus 84 ~v~q~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 84 VVPQFDNLD---PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEeccCcCC---CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 754433332 226899998876655554332223445566665554 347788999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||||++||+..+.++.+++.+
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 20
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-30 Score=210.11 Aligned_cols=161 Identities=15% Similarity=0.101 Sum_probs=123.6
Q ss_pred cchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cccc-cCCCCC------
Q 026996 61 NKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK------ 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-----~G~~-~~~~~~------ 121 (229)
.++++++|...|+++.. |+++.++|||||+|||||||||+++.+. ... +|++ +++..+
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn---dl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN---DLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc---ccCcCceEEEEEEECCeeccCCCCC
Confidence 34667778888887743 8899999999999999999999999987 333 3664 333332
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH------hhhhcCCCCCCCCCccccchh
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK------NLRNQGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~------~l~~~~~~~~~~lSgG~k~Rl 191 (229)
+..+|.+++..+-+. .+.++|+.+..+..|.....-.+.+...+. .+....+.....|||||+||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp----~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP----MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHHheeeccCCCCCC----chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 456788776665432 589999999999888754222222333333 334456677788999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+|||+++.+|+|||||||+++|||-+..++.+++.+.
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL 195 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=232.05 Aligned_cols=159 Identities=17% Similarity=0.105 Sum_probs=121.9
Q ss_pred hhhhhhhhhc-CCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEE
Q 026996 63 TSLKVLCSQR-REI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVAT 127 (229)
Q Consensus 63 ~~~~~l~~~~-~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~ 127 (229)
++++++++.| ++. +.+++|++++|+||||||||||||+|+|++ +|++|++. ++..+ ...+|+
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~---~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE---RITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHCCEEE
Confidence 5566777777 543 238899999999999999999999999999 99999954 44322 234677
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ ++...+. .+++.+|+.+.....+.........+.++++.++. ..+.++.+|||||+|||++|||++.+|+++|
T Consensus 81 v~-Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 81 VF-QNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred Ee-CCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 4433222 27899999877654443332223456677776554 4578889999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||+++||...+.++++.+..
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 22
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-30 Score=216.18 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=115.1
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEEEEe
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVATVL 129 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g~~i 129 (229)
+++++++|++. +.+.+||+++|+|+||||||||+|+|+|++ +|++|++. .+... ....+++.
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL---KPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEecCcChHHHhhcEEEec
Confidence 34455555543 338899999999999999999999999999 89999954 33222 12355543
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
++.... ..+++.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|
T Consensus 80 -q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 -QDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred -CCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 333222 2257888876654443432222234556677766543 46788899999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
|||++||+..++.+.+++.+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~ 176 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEK 176 (220)
T ss_pred CCccCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 23
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.96 E-value=2.7e-30 Score=214.77 Aligned_cols=145 Identities=21% Similarity=0.181 Sum_probs=108.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEEeecCCccccCccCCh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
.+++|++++|+||||||||||+|+|+|++ +|++|++. .+... ....+++. ++.... ..+++
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~-q~~~~~--~~~tv 99 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD---RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVF-QSFNLL--PDLTA 99 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCc---CCCceeEEECCEehhhcchhHHHHHHhhcEEEEe-eccccC--CCCcH
Confidence 48999999999999999999999999999 89999963 33222 12355543 332221 22578
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..+
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 179 (218)
T cd03255 100 LENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179 (218)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHH
Confidence 88877654333322111233456677766543 3677889999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 026996 222 SSMFDE 227 (229)
Q Consensus 222 ~~ll~~ 227 (229)
.+++.+
T Consensus 180 ~~~l~~ 185 (218)
T cd03255 180 MELLRE 185 (218)
T ss_pred HHHHHH
Confidence 998865
No 24
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.7e-30 Score=214.42 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=109.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC---CCcEEEEeecCCccccCccCChhhhHHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 152 (229)
.|++|++++|+|+||||||||+|+|+|++ .|++|++.. +... ....+++. ++.... ..+++.+++.+...
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~i~~v~-q~~~~~--~~~tv~e~l~~~~~ 99 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLE---RPTSGEVLVDGEPVTGPGPDRGYVF-QQDALL--PWLTVLDNVALGLE 99 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECccccCcEEEEe-cccccc--cCCCHHHHHHHHHH
Confidence 48999999999999999999999999999 899999643 3222 23456644 333221 22578888766544
Q ss_pred hcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 153 RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 153 ~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||+..+.++.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 100 LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 33332222234556677766543 4677889999999999999999999999999999999999999999998864
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=2.3e-30 Score=229.92 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=124.7
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVAT 127 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~ 127 (229)
.+++++++++|++.. .+++|++++|+||||||||||||+|+|++ .|++|++ +++..+ ...+|+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~---~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE---RQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHCCEEE
Confidence 356777888887652 37899999999999999999999999999 9999995 444322 234677
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ ++...+. .+++.+|+.+.....+.........+.++++.++.. .+.++.+|||||+||+++||||+.+|+++|
T Consensus 81 v~-Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 81 VF-QSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred Ee-CCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 4433222 278999998876554443333345667777766653 478889999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||+++||...+.++++.+.+
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-30 Score=229.61 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=124.4
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVAT 127 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~ 127 (229)
.++++++++.|++.. .+++||+++|+||||||||||||+|+|++ .|++|++ +++..+ ...+|+
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~---~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE---KPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHCCEEE
Confidence 567778888887643 38899999999999999999999999999 9999995 344322 235677
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ ++...+. .+++.+|+.+.....+.........+.++++.++. ..+.++.+|||||+||+++|||++.+|+++|
T Consensus 83 vf-Q~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 83 VF-QSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred Ee-CCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54 4433222 26899999887655444333334556677776654 3578889999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||+++||...+.++++.+..
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 27
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3e-30 Score=213.86 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=112.9
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEee
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLP 130 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~ 130 (229)
++++++.|++. +.+++|++++|+|+||||||||+++|+|++ +|++|++. .+... ....+++ .
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~i~~v-~ 78 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE---RPDSGEILIDGRDVTGVPPERRNIGMV-F 78 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcCcCchhhccEEEE-c
Confidence 34455555443 348899999999999999999999999999 89999953 33222 1234553 3
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
++.... ..+++.+++.+.....+.........+.++++.++.. .+.++..|||||+||+++|++++.+|+++|+||
T Consensus 79 q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 79 QDYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred Cchhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 332211 1257778776543333222112233455666666543 367788999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
||++||+..+..+.+++.+
T Consensus 157 Pt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 157 PLSALDAKLREELREELKE 175 (213)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999998865
No 28
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=3.9e-30 Score=224.29 Aligned_cols=160 Identities=16% Similarity=0.070 Sum_probs=119.0
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVA 126 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g 126 (229)
.++++++++.|++.. .|++|+++||+||||||||||+|+|+|++ .|++|++. .+... ....|
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI---SPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECcccHHHHhhcEE
Confidence 456777888887652 38899999999999999999999999999 89999954 33222 23466
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
++. ++.... ..+++.+++.+.....+.........+.++++.++. ..+.++..|||||+||+++|++++.+|+++
T Consensus 81 ~v~-q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 81 VVP-QFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEe-ccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 644 333222 226888887654443333221122334556665554 347788999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+||||++||+..+..+.+++.+
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 29
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=2.8e-30 Score=214.49 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=109.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.+++|++++|+||||||||||+|+|+|++ .|++|++. .+..+ ....+++. ++..... .+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~-q~~~~~~--~~tv~ 98 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIE---KPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVF-QDHRLLS--DRTVY 98 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEehhhcChhHHHHHHHhceEEe-cCccccc--cccHH
Confidence 38899999999999999999999999999 89999954 33222 12355543 3332211 25788
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
+++.+.....+.........+.++++.++. ..+.++..|||||+||+++|++++.+|+++|+||||++||...+..+.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 178 (216)
T TIGR00960 99 DNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIM 178 (216)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 887765443332222223455667776654 346778899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
+++.+
T Consensus 179 ~~l~~ 183 (216)
T TIGR00960 179 RLFEE 183 (216)
T ss_pred HHHHH
Confidence 98865
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.7e-30 Score=215.81 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=113.3
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcE
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDV 125 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~ 125 (229)
++++++.|++. +.+++|++++|+||||||||||+|+|+|++ +|++|++. .+... ...+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL---RPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccChhhHHHHhcce
Confidence 34455555443 348999999999999999999999999999 89999953 33221 1235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+++. ++.... ..+++.+++.+..... +.........+.++++.++.. .+.++..|||||+||+++|++++.+|+
T Consensus 80 ~~v~-q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLF-QSGALF--DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEc-cCcccC--CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5543 333221 2267888876543322 121111233456667766543 467788999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+..+.+++.+
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 31
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=5.1e-30 Score=226.69 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=121.2
Q ss_pred hhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------
Q 026996 63 TSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------- 121 (229)
+++++++|.|++ . +.|++|+++||+|+||||||||+|+|+|++ +|++|++. ++..+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~---~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCcCCHHHHH
Confidence 345566666642 1 338999999999999999999999999999 99999954 33322
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al 197 (229)
...+|++++...... ..++.+|+.+.....+........++.++++.++. ..+.++.+||||||||+++|||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLS---SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHhcCEEEEECCccccc---cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 224677554433321 25888998876554444333334556777776665 35688899999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|++||+||||++||+.....+.+++..
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKE 185 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=4.8e-30 Score=228.47 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=123.7
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC--ccc-cCCCCC------CCcEE
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASS-FDSQVK------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~--G~~-~~~~~~------~~~~g 126 (229)
+++++++++|++.. .|.+|++++|+||||||||||||+|+|++ .|++ |++ +++..+ ...+|
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV---KAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 56777888887642 38899999999999999999999999999 9999 995 343322 23467
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
++++ +...+ +.+++.+|+.+.....+.+.......+.++++.++. ..+.++.+|||||+|||++||||+.+|+++
T Consensus 83 ~vfQ-~~~l~--p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 83 LLFQ-NYALF--PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred EEEC-CcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 7554 43222 237899999887665554333334456777776655 357889999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||||+++||+..+.++++.+.+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 33
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=8.4e-30 Score=210.71 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=109.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC----CCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
.+.+|++++|+|+||||||||+++|+|++ +|++|++.. +... ....+++. ++.... ..+++.+++.+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~i~~~~-q~~~~~--~~~tv~e~l~~~~ 95 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPLDIAARNRIGYLP-EERGLY--PKMKVIDQLVYLA 95 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCCchhHHHHccEEEec-cCCcCC--cCCcHHHHHHHHH
Confidence 48999999999999999999999999999 899999644 3322 23455543 333221 2257888876654
Q ss_pred HhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 152 ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
...+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 96 QLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred HHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 433332222234456666666543 4567889999999999999999999999999999999999999999988864
No 34
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.9e-30 Score=228.65 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=120.7
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEE
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATV 128 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~ 128 (229)
++++++++.|++.. .|++|++++|+||||||||||+|+|+|++ +|++|++. .+... ...++++
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~---~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---DITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCCCCHhHCCEEEE
Confidence 55677777776542 38899999999999999999999999999 89999954 33222 2246664
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
+ ++..... .+++.+|+.+.....+.........+.++++.++.. .+.++.+|||||+||+++|+|++.+|+++|+
T Consensus 81 ~-Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 81 F-QSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred e-CCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 4433222 268899987765444433222234566777766653 4678889999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||+..++++.+++.+
T Consensus 158 DEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999887754
No 35
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=1e-29 Score=210.27 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=106.9
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcEEEEeecCCc-cccCccCChhhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDVATVLPMDGF-HLYLSQLDAMED 146 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~g~~i~~~~~-~~~~~~l~~~~~ 146 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++. .+... ...++++ .++.. ... ..++.++
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~~~~~--~~t~~~~ 96 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLV-FQNPDDQFF--GPTVEEE 96 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEcccCCHHHHHhhceEE-ecChhhhcC--CCcHHHH
Confidence 48899999999999999999999999999 89999954 33222 1234553 34431 112 2577787
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
+.+.....+.........+.++++.++.. .+.++..|||||+||+++|+|++.+|+++|+||||++||+..+..+.++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 176 (211)
T cd03225 97 VAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176 (211)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 76543322221111233455666665543 4678889999999999999999999999999999999999999999998
Q ss_pred HHh
Q 026996 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+.+
T Consensus 177 l~~ 179 (211)
T cd03225 177 LKK 179 (211)
T ss_pred HHH
Confidence 864
No 36
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.8e-30 Score=205.19 Aligned_cols=146 Identities=15% Similarity=0.244 Sum_probs=124.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---CCcEEEEeecCCccccCccCChhhhHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~ 153 (229)
|.+||.++++|||||||||||++++|+. .|+.|++ +++..+ ..+.|.+++.+...++ +++.+|+.+..+.
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~---~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPW---l~~~dNvafgL~l 101 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFV---TPSRGSIQLNGRRIEGPGAERGVVFQNEALLPW---LNVIDNVAFGLQL 101 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCc---CcccceEEECCEeccCCCccceeEeccCccchh---hHHHHHHHHHHHh
Confidence 8899999999999999999999999999 9999995 444333 3467887777777665 6889999999999
Q ss_pred cCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhhC
Q 026996 154 RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 154 ~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~~ 229 (229)
.|+.+....+...+.+..++. ..++++-+|||||+||+.+|||++.+|++|++|||+..||.-.++++.+++-..|
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw 179 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW 179 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHH
Confidence 999877666667777775554 5678899999999999999999999999999999999999999999888876554
No 37
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=1.4e-29 Score=208.71 Aligned_cols=141 Identities=20% Similarity=0.143 Sum_probs=107.7
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----CCcEEEEeecCC-ccccCccCChhhhHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----PPDVATVLPMDG-FHLYLSQLDAMEDPKE 149 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----~~~~g~~i~~~~-~~~~~~~l~~~~~~~~ 149 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++. ++... ....+++. ++. +... ..++.+++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~i~~~~-q~~~~~~~--~~tv~e~l~~ 95 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLI---KESSGSILLNGKPIKAKERRKSIGYVM-QDVDYQLF--TDSVREELLL 95 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEhhhHHhhcceEEEe-cChhhhhh--hccHHHHHhh
Confidence 48899999999999999999999999999 89999964 33322 22456643 442 2112 1477787765
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 150 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.....+ .....+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..++.+.+++.+
T Consensus 96 ~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 171 (205)
T cd03226 96 GLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171 (205)
T ss_pred hhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 432221 1234566777766553 4677889999999999999999999999999999999999999999998865
No 38
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=1e-29 Score=211.59 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=109.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
.+++|++++|+||||||||||+++|+|++ +|++|++. .+... ....+++. ++.... ...++.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~~~--~~~tv~~~l~ 97 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL---RPTSGTAYINGYSIRTDRKAARQSLGYCP-QFDALF--DELTVREHLR 97 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEecccchHHHhhhEEEec-CcCCcc--ccCCHHHHHH
Confidence 38999999999999999999999999999 89999964 33322 12356544 333221 1257888877
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||+..++.+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 98 FYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 65444443222223345666665554 3467788999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 178 ~ 178 (220)
T cd03263 178 E 178 (220)
T ss_pred H
Confidence 5
No 39
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=1.3e-29 Score=208.73 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=109.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEEeecCCccccCccCC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~i~~~~~~~~~~~l~ 142 (229)
+.+++|++++|+|+||||||||+++|+|++ .|++|++. .+..+ ....+++. ++..... ..+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~-q~~~~~~--~~t 92 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLE---KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLF-QNFALIE--NET 92 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEccccchhhHHHHHHhCeeEEe-cchhhcc--CCc
Confidence 348899999999999999999999999999 89999953 33321 12355543 3322211 257
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||+..++.
T Consensus 93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~ 172 (206)
T TIGR03608 93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDE 172 (206)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHH
Confidence 88887764433332222233455667776654 4467888999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++..
T Consensus 173 l~~~l~~ 179 (206)
T TIGR03608 173 VLDLLLE 179 (206)
T ss_pred HHHHHHH
Confidence 9998865
No 40
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=9.1e-30 Score=211.00 Aligned_cols=145 Identities=15% Similarity=0.113 Sum_probs=108.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.|++|++++|+|+||||||||+++|+|++ +|++|++.. +... ....+++ .++.... ...++.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~-~q~~~~~--~~~tv~ 97 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVV-FQDFRLL--PDRTVY 97 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcccCCHHHHHHHHhheEEE-ecChhhc--cCCcHH
Confidence 48999999999999999999999999999 899999543 3221 1234553 3333221 125778
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
+++.+.....+.........+.+.++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||+..+..+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 177 (214)
T TIGR02673 98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH
Confidence 8876654333322222234456667766543 35678899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
+++.+
T Consensus 178 ~~l~~ 182 (214)
T TIGR02673 178 DLLKR 182 (214)
T ss_pred HHHHH
Confidence 98865
No 41
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=8e-30 Score=211.90 Aligned_cols=145 Identities=18% Similarity=0.094 Sum_probs=109.5
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
.+++|++++|+|+||||||||+++|+|++ .|++|++. .+... ....+++. ++.... ..+++.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~-q~~~~~--~~~tv~e~l~ 100 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL---EPDAGFATVDGFDVVKEPAEARRRLGFVS-DSTGLY--DRLTARENLE 100 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEEcccCHHHHHhhEEEec-CCcccC--cCCCHHHHHH
Confidence 48899999999999999999999999999 89999953 33222 12355543 333222 2257888877
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..++.+.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 180 (218)
T cd03266 101 YFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180 (218)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 654443332222234556677766553 467888999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 181 ~ 181 (218)
T cd03266 181 Q 181 (218)
T ss_pred H
Confidence 5
No 42
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1.4e-29 Score=220.76 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=112.5
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEEEEeecCCccccCccCChhhhH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
+.|++|+++||+||||||||||+|+|+|++ +|++|++. .+... ....|++.+...++ ..+++.+++
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~e~l 87 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLL---RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD---EDLTGRENL 87 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC---CCCcHHHHH
Confidence 448999999999999999999999999999 89999954 33222 12356644332222 226888888
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
.+.....+.........+.++++.++. ..+.++..|||||+||+++|+|++.+|+++|+||||++||+..+..+.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 167 (302)
T TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167 (302)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 766554443322223456677776665 347788999999999999999999999999999999999999999999988
Q ss_pred Hh
Q 026996 226 DE 227 (229)
Q Consensus 226 ~~ 227 (229)
.+
T Consensus 168 ~~ 169 (302)
T TIGR01188 168 RA 169 (302)
T ss_pred HH
Confidence 65
No 43
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=215.80 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=115.6
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---CCcEEEEeecC
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---PPDVATVLPMD 132 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---~~~~g~~i~~~ 132 (229)
+++++++.|++. +.|++|++++|+|+||||||||+++|+|++ +|++|++. .+... ....+++. ++
T Consensus 3 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~v~-q~ 78 (255)
T PRK11248 3 QISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSITLDGKPVEGPGAERGVVF-QN 78 (255)
T ss_pred EEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCCcEEEEe-CC
Confidence 345566666543 338899999999999999999999999999 89999964 33222 22356644 33
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCc
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~ 210 (229)
.... ..+++.+++.+.....+.........+.++++.++.. .+.++..|||||+||+++|++++.+|+++|+||||
T Consensus 79 ~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 79 EGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred CccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3221 2257888876543333332222234456677766543 36778899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHh
Q 026996 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 ~~LD~~~~~~~~~ll~~ 227 (229)
++||+..+..+.+++.+
T Consensus 157 ~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 157 GALDAFTREQMQTLLLK 173 (255)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999998865
No 44
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=6.9e-30 Score=228.33 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=123.0
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVAT 127 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~ 127 (229)
.++++++++.|++.. .+++|++++|+||||||||||||+|+|++ +|++|++ +++..+ ...+|+
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~---~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE---TPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHCCEEE
Confidence 467778888887642 38899999999999999999999999999 9999995 444322 234677
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ ++...+. .+++.+|+.+.....+.+.......+.++++.++. ..+.++.+|||||+|||++|||++.+|+++|
T Consensus 91 vf-Q~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 91 VF-QSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred Ee-cCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 4433222 27899998876554443322223455667776554 3577889999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||+++||...+.++++.+..
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~ 189 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKA 189 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 45
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=5.3e-30 Score=203.68 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=117.7
Q ss_pred hhhhhhhcCCcc-----cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----CCcEEEEeecCC
Q 026996 65 LKVLCSQRREIP-----VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----PPDVATVLPMDG 133 (229)
Q Consensus 65 ~~~l~~~~~~~~-----~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----~~~~g~~i~~~~ 133 (229)
+..|..+|+..+ .|+.||+++|+||+||||||||++|+|+. .|.+|++. .+.+. ..+-..++.+++
T Consensus 4 L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~---~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEn 80 (231)
T COG3840 4 LDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQEN 80 (231)
T ss_pred ccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc---CCCCceEEEcCeecCcCCcccCChhhhhhcc
Confidence 445556666552 38999999999999999999999999999 99999964 44332 112233334443
Q ss_pred ccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCc
Q 026996 134 FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~ 210 (229)
..+. .+++.+|+.....- ++ -...+.+++..++..++. ..+..+.+||||||||+++||.++.+-+|+++||||
T Consensus 81 NLFa--HLtV~qNigLGl~P-~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 81 NLFA--HLTVAQNIGLGLSP-GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred ccch--hhhhhhhhcccCCc-ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 3222 27888876643321 22 224456677777777665 456778899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhh
Q 026996 211 LFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 211 ~~LD~~~~~~~~~ll~~~ 228 (229)
+.||+..+.++..++...
T Consensus 158 sALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 158 SALDPALRAEMLALVSQL 175 (231)
T ss_pred hhcCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 46
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=7.5e-30 Score=211.00 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=135.1
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----CCcEEEEe
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----PPDVATVL 129 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----~~~~g~~i 129 (229)
.+++++|+|+||++.+ +++|++.|++|+|||||||++|+|.|++ .|++|++. .++++ ..++|+..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll---e~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL---EPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC---CccCceEEEcCcchhhhhhhhcccCh
Confidence 3578899999999843 8899999999999999999999999999 99999964 44333 44677754
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
.-.+.+.. +++.+.+.++....|++.......+..+++.+.. ....++.+||.|++|++.+..++++.|+++|||
T Consensus 79 EERGLy~k---~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 79 EERGLYPK---MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred hhhccCcc---CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 45555443 6899999999999999887777788888887765 456789999999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
|||++|||-+.+.+.+.+.+
T Consensus 156 EPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred CCccCCChhhHHHHHHHHHH
Confidence 99999999999888887654
No 47
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=1.1e-29 Score=221.16 Aligned_cols=159 Identities=15% Similarity=0.085 Sum_probs=121.3
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------CCcEEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------PPDVAT 127 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------~~~~g~ 127 (229)
+++++++++|+++ +.+++||++||+||||||||||+|+|+|++ .|++|++ +++... ....|+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~---~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEcccChHHHHhceEE
Confidence 4566777777765 238899999999999999999999999999 8999995 444322 224666
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
+.+...++ ..+++.+++.+.....+.+.......+.++++.++.. .+.++..||+||+||+++|+|++.+|+++|
T Consensus 80 ~~q~~~l~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 80 LPEHNPLY---LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred ecCCCCCC---CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44333322 2268888887765555543322234566677766553 477889999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||+++||+..++.+.+++..
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=1.3e-29 Score=209.90 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=112.8
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEee
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLP 130 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~ 130 (229)
++++++.|++. +.|++|++++|+|+||||||||+++|+|++ .|++|++. ++... ....+++ .
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~v~~~g~~~~~~~~~~~~i~~~-~ 78 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE---EPTSGRIYIGGRDVTDLPPKDRDIAMV-F 78 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCCcccceEEEE-e
Confidence 34455555443 338899999999999999999999999999 89999953 33222 1134553 3
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
++.... ...++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+||
T Consensus 79 q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 79 QNYALY--PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred cChhhc--cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 333222 225788887665433332222222344556666554 3467888999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||+..+..+.+++.+
T Consensus 157 Pt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999988864
No 49
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.96 E-value=1.4e-29 Score=210.78 Aligned_cols=145 Identities=17% Similarity=0.056 Sum_probs=107.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC------------CcEEEEeecCCccccCccCCh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP------------PDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~------------~~~g~~i~~~~~~~~~~~l~~ 143 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++.. +.... ...+++. ++..... .+++
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~-q~~~~~~--~~tv 100 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLD---NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIY-QFHHLLP--DFTA 100 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEe-cccccCC--CCcH
Confidence 48999999999999999999999999999 899999643 32211 2355544 4432221 2578
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
.+++.+...............+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||+..+..+
T Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 180 (221)
T TIGR02211 101 LENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180 (221)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHH
Confidence 88876543322222111233455666666543 4677889999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 026996 222 SSMFDE 227 (229)
Q Consensus 222 ~~ll~~ 227 (229)
.+++.+
T Consensus 181 ~~~l~~ 186 (221)
T TIGR02211 181 FDLMLE 186 (221)
T ss_pred HHHHHH
Confidence 998864
No 50
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.96 E-value=1.6e-29 Score=209.46 Aligned_cols=147 Identities=14% Similarity=0.052 Sum_probs=107.5
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC---CCcEEEEeecCCccccCccCChhhhHHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 152 (229)
.|++|++++|+||||||||||+++|+|++ .|++|++..++ .. ....+++. ++.........++.+++.....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~i~~v~-q~~~~~~~~~~tv~e~l~~~~~ 96 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLL---KPTSGSIRVFGKPLEKERKRIGYVP-QRRSIDRDFPISVRDVVLMGLY 96 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCccHHHHHhheEEec-cccccccCCCCcHHHHHHhccc
Confidence 48999999999999999999999999999 89999964433 22 23466644 3332211112577787665322
Q ss_pred hcC-C---CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 153 RRG-A---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 153 ~~g-~---~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
... . ........+.++++.++. ..+.++..|||||+||+++|++++.+|+++|+||||++||+..+..+.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 176 (213)
T cd03235 97 GHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLR 176 (213)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 111 0 111123345666666554 3467889999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 177 ~ 177 (213)
T cd03235 177 E 177 (213)
T ss_pred H
Confidence 5
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=1.8e-29 Score=211.67 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=113.0
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCcEEE
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPDVAT 127 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~~g~ 127 (229)
++++++.|++. +.+.+|++++|+|+||||||||+|+|+|++ .|++|++. .+... ....++
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV---KPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 34555555543 348899999999999999999999999999 89999953 33221 123555
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
+. ++.... ..+++.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|
T Consensus 80 ~~-q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LP-QEASIF--RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ec-CCcccc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 43 333211 2257888876544333322112223445666655543 467788999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||||++||...++.+.+++.+
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 52
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-29 Score=226.31 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=123.6
Q ss_pred ccchhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcE
Q 026996 60 QNKTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDV 125 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~ 125 (229)
...++++++.+.|++. +.+++|++++|+||||||||||||+|+|++ .|++|++. ++..+ ...+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~---~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE---QPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHCCE
Confidence 4457788888888764 238899999999999999999999999999 99999953 43322 2356
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
|+++ ++...+. .+++.+|+.+.....+.........+.++++.++. ..+.++.+|||||+||+++|||++.+|++
T Consensus 94 g~vf-Q~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 94 NMMF-QSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred EEEe-CCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 7755 4433222 37899999877654443332233455667776554 34788899999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHH
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~ 226 (229)
||+|||+++||...+.++++.+.
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~ 193 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVV 193 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999988876654
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.3e-29 Score=211.20 Aligned_cols=145 Identities=20% Similarity=0.187 Sum_probs=108.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.|++|++++|+||||||||||+++|+|++ +|++|++ +++..+ ....+++. ++.... ..+++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~-q~~~~~--~~~t~~ 100 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLE---RPTSGSVLVDGTDLTLLSGKELRKARRRIGMIF-QHFNLL--SSRTVF 100 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcccCCHHHHHHHHhheEEEc-cCcccC--CCCcHH
Confidence 38899999999999999999999999999 8999995 333322 12345543 333221 125788
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
+++.+.....+.........+.+.++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..+.
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~ 180 (233)
T cd03258 101 ENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180 (233)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHH
Confidence 8876544333322212233456667766543 46778899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
+++.+
T Consensus 181 ~~l~~ 185 (233)
T cd03258 181 ALLRD 185 (233)
T ss_pred HHHHH
Confidence 98864
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=2e-29 Score=212.16 Aligned_cols=157 Identities=17% Similarity=0.081 Sum_probs=113.1
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC-------CcEEEEe
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP-------PDVATVL 129 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~-------~~~g~~i 129 (229)
+++++++|++. +.|.+|++++|+|+||||||||+++|+|++ +|++|++. ++.... ...+++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~i~~~~~~~~~~i~~~- 79 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY---VAQEGQISVAGHDLRRAPRAALARLGVV- 79 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEcccCChhhhhhEEEe-
Confidence 44555555543 238899999999999999999999999999 89999954 332221 234553
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
.++..... ..++.+++.......+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|
T Consensus 80 ~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 80 FQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred CCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33332211 257788776544333322212233455666665543 46778899999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++||+..++++.+++..
T Consensus 158 EP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCccCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=218.65 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=111.8
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC----------CCcEEEEeecCCccccCccCChhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----------PPDVATVLPMDGFHLYLSQLDAME 145 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~----------~~~~g~~i~~~~~~~~~~~l~~~~ 145 (229)
.|.+||++||+|+||||||||+++|+|++ .|++|++ +++... ...+|++++...+.... .++.+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~--~tv~e 103 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLL---KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE--ETIEK 103 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc--ccHHH
Confidence 38999999999999999999999999999 9999995 444222 12456654432222221 47888
Q ss_pred hHHHHHHhcCCCCCccHHHHHHHHHhhhhc----CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 146 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
++.+.....+.........+.++++.++.. .+.++..|||||+||+++|+|++.+|+++|+||||++||+..+.++
T Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l 183 (287)
T PRK13637 104 DIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEI 183 (287)
T ss_pred HHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHH
Confidence 887654444443322334566777766653 5678899999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 026996 222 SSMFDE 227 (229)
Q Consensus 222 ~~ll~~ 227 (229)
.+++.+
T Consensus 184 ~~~l~~ 189 (287)
T PRK13637 184 LNKIKE 189 (287)
T ss_pred HHHHHH
Confidence 998864
No 56
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.1e-29 Score=223.19 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=118.2
Q ss_pred hhhhhhhhcC----Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------
Q 026996 64 SLKVLCSQRR----EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------- 121 (229)
Q Consensus 64 ~~~~l~~~~~----~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------- 121 (229)
++++++++|+ +. +.|++|+++||+||||||||||+|+|+|++ +|++|++. .+..+
T Consensus 3 ~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE---RPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCcCCHHHHHH
Confidence 4556666665 12 238999999999999999999999999999 89999964 33222
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
...++++++...+. . .+++.+++.+.....+.........+.++++.++.. .+.++.+|||||+||+++|++++
T Consensus 80 ~~~~ig~v~q~~~l~-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 80 ARRQIGMIFQHFNLL-S--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HhcCEEEEeCCCccC-C--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 13466654433322 1 268888887765544433222234556677766543 46788899999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|+++|+||||++||+..+..+.+++.+
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~ 185 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKD 185 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 57
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.3e-29 Score=213.25 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=118.3
Q ss_pred hhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CC
Q 026996 64 SLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PP 123 (229)
Q Consensus 64 ~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~ 123 (229)
.++++.+.|++..+ +++|++++|+||||||||||+++|+|++ .|++|++. ++... ..
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~---~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI---EPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688999988743 8899999999999999999999999999 89999953 33222 12
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
..+++. ++.... ..+++.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|
T Consensus 103 ~i~~v~-q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 103 KISMVF-QSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred cEEEEe-cCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 355543 333222 1257888876654333322222233456667766543 46788899999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++||...+..+.+++.+
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 58
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.9e-30 Score=207.13 Aligned_cols=160 Identities=20% Similarity=0.203 Sum_probs=122.8
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~---------~~ 124 (229)
.+.++++.|+|+.+.+ +++||++||+|||||||||.|.|+.|+. +|++|++ +++..+. .-
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv---~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV---RPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE---ecCCceEEECCcccccCChHHHhhcC
Confidence 4667889999998854 7899999999999999999999999999 9999995 4444331 12
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCC--ccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
+|+ ++|..-. ...+++.+|+............ .....+.++++.+.. -.+.+..+||||||+|+.|||||+.+
T Consensus 81 igY-LpQE~SI--Fr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGY-LPQEASI--FRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred ccc-ccccchH--hhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 444 3333321 1238999998877765542222 233345577776655 35778889999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++|||||++.||-....+..++..
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHH
Confidence 999999999999999988888777653
No 59
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.7e-29 Score=211.01 Aligned_cols=159 Identities=15% Similarity=0.083 Sum_probs=115.7
Q ss_pred hhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC--------
Q 026996 63 TSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP-------- 122 (229)
Q Consensus 63 ~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~-------- 122 (229)
++++++++.|++ . +.|++|++++|+|+||||||||+++|+|++ +|++|++.. +....
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD---TPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcCcCCHHHHH
Confidence 445556666643 1 348999999999999999999999999999 899999643 32221
Q ss_pred ----CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhh
Q 026996 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 123 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~a 196 (229)
..++++ .++.... ..+++.+++.+.....+.........+.++++.++.. .+.++..|||||+||+++|++
T Consensus 83 ~~~~~~i~~v-~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFI-YQFHHLL--PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEE-ecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 235664 3443222 2258888876643322322222234456677766653 356778999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++|+||||++||+..+.++.+++.+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988864
No 60
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=1.9e-29 Score=208.98 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=107.7
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.+++|++++|+|+||||||||+++|+|++ +|++|++. ++..+ ....+++. ++.... ..+++.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~-q~~~~~--~~~t~~ 96 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE---LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVF-QDFRLL--PDRNVY 96 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcccCCHHHHHHHHHheEEEe-cCchhc--cCCcHH
Confidence 38899999999999999999999999999 89999964 33222 11345543 333221 225788
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
+++.+.....+.........+.+.++.++. ..+.++..||+||+||+++|++++.+|+++|+||||++||+..++.+.
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~ 176 (214)
T cd03292 97 ENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 887765443332222222345566666554 346678899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
+++.+
T Consensus 177 ~~l~~ 181 (214)
T cd03292 177 NLLKK 181 (214)
T ss_pred HHHHH
Confidence 98764
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=212.41 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=114.3
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC------CCcEEEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK------PPDVATV 128 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~------~~~~g~~ 128 (229)
++++++++.|++. +.+++|++++|+||||||||||+|+|+|++ .|++|++.. +... ....+++
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE---RPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCCccccceEEE
Confidence 4456667777654 238899999999999999999999999999 899999543 3221 1235554
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCC----CCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~----~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
. ++.... ..+++.+++.+.....+. ........+.++++.++.. .+.++..||+||+||+++|+|++.+|+
T Consensus 80 ~-q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 80 F-QHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred e-cCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3 333221 125788887654332221 1111123345566655543 467788999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..++.+.+++.+
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 62
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.8e-29 Score=207.74 Aligned_cols=144 Identities=19% Similarity=0.119 Sum_probs=107.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
.+++| +++|+||||||||||+++|+|++ +|++|++. .+... ....+++ .++.... ..+++.+++.
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~-~q~~~~~--~~~tv~~~l~ 94 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLT---PPSSGTIRIDGQDVLKQPQKLRRRIGYL-PQEFGVY--PNFTVREFLD 94 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCCccccchHHHHhheEEe-cCCCccc--ccCCHHHHHH
Confidence 48899 99999999999999999999999 89999964 33322 1234553 3333322 2257888876
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+||||++||+..++.+.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 174 (211)
T cd03264 95 YIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS 174 (211)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 65443332222223445566666554 3467888999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 175 ~ 175 (211)
T cd03264 175 E 175 (211)
T ss_pred H
Confidence 5
No 63
>PRK10908 cell division protein FtsE; Provisional
Probab=99.96 E-value=2.7e-29 Score=209.46 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=107.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.+++|++++|+||||||||||+++|+|++ +|++|++. .+..+ ....+++ .++..... ..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~-~q~~~~~~--~~tv~ 97 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIE---RPSAGKIWFSGHDITRLKNREVPFLRRQIGMI-FQDHHLLM--DRTVY 97 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEcccCChhHHHHHHhheEEE-ecCccccc--cccHH
Confidence 48999999999999999999999999999 89999954 33222 1234554 33332211 25777
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
+++.+.....+.........+.+.++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||...++++.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (222)
T PRK10908 98 DNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177 (222)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 887654433332222222344566666554 346778899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
+++.+
T Consensus 178 ~~l~~ 182 (222)
T PRK10908 178 RLFEE 182 (222)
T ss_pred HHHHH
Confidence 88764
No 64
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=4.4e-29 Score=222.06 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=115.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------------CCcEEEEeecCCccccCccCC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------------PPDVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------------~~~~g~~i~~~~~~~~~~~l~ 142 (229)
+.|++||+++|+|+||||||||+|+|+|++ .|++|++ +++..+ ...++++++....+. .++
T Consensus 14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~---~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~---~~T 87 (363)
T TIGR01186 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLI---EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP---HMT 87 (363)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCC---CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC---CCC
Confidence 348999999999999999999999999999 9999995 444322 235677655444332 268
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+.+|+.+.....+.......+.+.++++.++. ..+.++.+|||||+||+++|+|++.+|+++|+||||++||+..+.+
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~ 167 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDS 167 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 89998877665554433334556777776655 3577888999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++..
T Consensus 168 l~~~l~~ 174 (363)
T TIGR01186 168 MQDELKK 174 (363)
T ss_pred HHHHHHH
Confidence 9988754
No 65
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.2e-29 Score=210.98 Aligned_cols=145 Identities=16% Similarity=0.116 Sum_probs=108.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.|++|++++|+||||||||||+++|+|++ .|++|++. .+... ....+++ .++.... ..+++.+++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~~~--~~~tv~e~l 96 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI---EPTSGEIFIDGEDIREQDPVELRRKIGYV-IQQIGLF--PHMTVEENI 96 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCeEcCcCChHHhhcceEEE-ccCcccc--CCCcHHHHH
Confidence 38999999999999999999999999999 89999964 33322 1234553 3333221 125788887
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhhc----CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
.+.....+.........+.++++.++.. .+.++.+||+||+||+++|++++.+|+++|+|||+++||+..+..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 176 (242)
T cd03295 97 ALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 7654333322122234556777766654 367788999999999999999999999999999999999999999988
Q ss_pred HHHh
Q 026996 224 MFDE 227 (229)
Q Consensus 224 ll~~ 227 (229)
++.+
T Consensus 177 ~L~~ 180 (242)
T cd03295 177 EFKR 180 (242)
T ss_pred HHHH
Confidence 8764
No 66
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=3.2e-29 Score=207.49 Aligned_cols=145 Identities=20% Similarity=0.213 Sum_probs=106.7
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------CCcEEEEeecCCccccCccCChhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----------PPDVATVLPMDGFHLYLSQLDAME 145 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----------~~~~g~~i~~~~~~~~~~~l~~~~ 145 (229)
.+++|++++|+||||||||||+++|+|++ +|++|++. .+... ....+++. ++.... ..+++.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~-q~~~~~--~~~t~~e 95 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKLTDDKKNINELRQKVGMVF-QQFNLF--PHLTVLE 95 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCccchhHHHHHhcceEEe-cccccC--CCCcHHH
Confidence 48899999999999999999999999999 89999954 33222 12345543 333221 1257778
Q ss_pred hHHHHHH-hcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 146 DPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 146 ~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
++.+... ..+.........+.++++.++.. .+.++.+||+||+||+++|++++.+|+++|+||||++||...++.+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 175 (213)
T cd03262 96 NITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175 (213)
T ss_pred HHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 7765432 22222111223455666665543 46788899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
+++.+
T Consensus 176 ~~l~~ 180 (213)
T cd03262 176 DVMKD 180 (213)
T ss_pred HHHHH
Confidence 98864
No 67
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=3.3e-29 Score=210.57 Aligned_cols=145 Identities=19% Similarity=0.165 Sum_probs=107.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------CcEEEEeecCCccccCccCChhhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++. ++.... ...+++. ++.... ..+++.++
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~-q~~~l~--~~~tv~~~ 95 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDITGLPPHEIARLGIGRTF-QIPRLF--PELTVLEN 95 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEECCCCCHHHHHhcCEEEEe-cccccc--cCCCHHHH
Confidence 48999999999999999999999999999 89999953 332221 2245543 332211 22578888
Q ss_pred HHHHHHhcCCC----------CCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 147 PKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 147 ~~~~~~~~g~~----------~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
+.+.....+.. .......+.++++.++.. .+.++.+|||||+||+++|++++.+|+++|+||||++||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 175 (236)
T cd03219 96 VMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175 (236)
T ss_pred HHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 76654332211 111223456666666543 367788999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 026996 215 GGVWKDVSSMFDE 227 (229)
Q Consensus 215 ~~~~~~~~~ll~~ 227 (229)
+..+..+.+++.+
T Consensus 176 ~~~~~~l~~~l~~ 188 (236)
T cd03219 176 PEETEELAELIRE 188 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 68
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=4.7e-29 Score=205.94 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=113.6
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC------CcEEEEee
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP------PDVATVLP 130 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~------~~~g~~i~ 130 (229)
++++++.|++. +.+++|++++|+|+||||||||+++|+|++ +|++|++.. +.... ...+++ .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~~-~ 78 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI---KPDSGEITFDGKSYQKNIEALRRIGAL-I 78 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCCcccchHHHHhhEEEe-c
Confidence 34555555543 238899999999999999999999999999 899999643 33221 235553 3
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
++.... ...++.+++.......+. ....+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+||
T Consensus 79 q~~~~~--~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 152 (208)
T cd03268 79 EAPGFY--PNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152 (208)
T ss_pred CCCccC--ccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 333221 125788887665433321 23455666676654 3467788999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
||++||...++++.+++.+
T Consensus 153 Pt~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 153 PTNGLDPDGIKELRELILS 171 (208)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999988864
No 69
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.96 E-value=4.5e-29 Score=208.80 Aligned_cols=159 Identities=18% Similarity=0.077 Sum_probs=114.9
Q ss_pred hhhhhhhhhcCC----------c-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------
Q 026996 63 TSLKVLCSQRRE----------I-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP-------- 122 (229)
Q Consensus 63 ~~~~~l~~~~~~----------~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~-------- 122 (229)
++++++++.|++ . +.+++|++++|+|+||||||||+++|+|++ +|++|++. ++....
T Consensus 7 l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD---DGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred EEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeeEEECCEEcccCCHHHHH
Confidence 455566666653 1 338899999999999999999999999999 89999964 332221
Q ss_pred ----CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhh
Q 026996 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 123 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~a 196 (229)
...+++. ++..... .+++.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++
T Consensus 84 ~~~~~~i~~~~-q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVF-QSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEE-cccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 2355543 3332222 257778876543322222222234556667766543 467788999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++|+||||++||+..+..+.+++.+
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998854
No 70
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=223.18 Aligned_cols=159 Identities=13% Similarity=0.152 Sum_probs=119.6
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEEE
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVATV 128 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~~ 128 (229)
++++++++.|++.. .|++||+++|+||||||||||+|+|+|++ .|++|++ +++..+ ...++++
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~---~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE---HQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 45666777776642 38899999999999999999999999999 8999995 444322 2346765
Q ss_pred eecCCccccCccCChhhhHHHHHHhc----CCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~----g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+ ++...+ +.+++.+|+.+..... +.........+.++++.++.. .+.++.+|||||+||+++|+|++.+|+
T Consensus 80 ~-Q~~~l~--p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 80 F-QHYALF--RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred e-cCcccC--CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4 443222 2268889887654431 111122234566777766543 477889999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+|||+++||...+.++++++.+
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988865
No 71
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=4.8e-29 Score=208.93 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=110.1
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC---------CCcEEE
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK---------PPDVAT 127 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~---------~~~~g~ 127 (229)
+++|++.|++. +.+++|++++|+|+||||||||+++|+|++ .|++|++..++ .. ....++
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL---PVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 34455555433 348899999999999999999999999999 89999954332 21 123555
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---hhcCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
+ .++.... ..+++.+++.+.....+.. ......++++.+ ....+.++..||+||+||+++|++++.+|+++
T Consensus 80 ~-~q~~~~~--~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 80 V-PQGREIF--PRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred e-ccCCccc--CCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3 3333221 2257778776543332211 112223344433 33457889999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|||+++||+..+.++.+++.+
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 72
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=4.2e-29 Score=207.99 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=110.9
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCcEEE
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPDVAT 127 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~~g~ 127 (229)
++++++.|++. +.+++|+++||+||||||||||+++|+|++ .|++|++. ++... ....++
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL---PPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 34455555543 348899999999999999999999999999 89999953 33222 123555
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---hhcCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
+. ++.... ..+++.+++.+.....+ .......+.++++.+ ....+.++..||+||+||+++|++++.+|+++
T Consensus 80 ~~-q~~~~~--~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 154 (222)
T cd03224 80 VP-EGRRIF--PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154 (222)
T ss_pred ec-cccccC--CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 43 333211 22577787765443322 111222334444444 33457788899999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|||+++||+..+..+.+++.+
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 73
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=6.8e-29 Score=213.01 Aligned_cols=162 Identities=14% Similarity=0.208 Sum_probs=117.8
Q ss_pred ccchhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------
Q 026996 60 QNKTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------- 121 (229)
...++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ +|++|++. ++..+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI---APDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEccccChhhHHH
Confidence 3456777888888654 238899999999999999999999999999 89999953 33222
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al 197 (229)
...++++. ++.... ..+++.+++.+..... ..........+.+.++.++.. .+.++..|||||+||+++|+++
T Consensus 82 ~~~~i~~v~-q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral 158 (269)
T PRK11831 82 VRKRMSMLF-QSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158 (269)
T ss_pred HhhcEEEEe-cccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 12355543 333221 2257888876543222 111111123445566665543 4677889999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+++|+||||++||+..+..+.+++.+
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988865
No 74
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=7e-29 Score=204.03 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=122.5
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.+++++|.-.||..++ +++||+++|+|+||+|||||||+|+|+. +|.+|++. .+.++. .-
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~---~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV---RPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3566677777877643 8899999999999999999999999999 89999964 444441 12
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCC--CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
++++ ++.-. ..+.+|+.||+......... ....+.+.+.+.|=.|....+.+..+|||||+|.+++||||+.+|+
T Consensus 80 i~~V-PegR~--iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 80 IAYV-PEGRR--IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eEeC-ccccc--chhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 3442 22222 12238999998865443321 1122255667777788888899999999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+||||+.+|-|...+++.+.+..
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHH
Confidence 9999999999999988888887754
No 75
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.9e-29 Score=215.65 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=111.5
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------------CCcEEEEeecCCccccCccCCh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
.|++||+++|+|+||||||||+|+|+|++ .|++|++ +++..+ ...+|++++........ .++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv 103 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLL---QPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE--ETV 103 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh--hhH
Confidence 48999999999999999999999999999 8999995 344322 12466654432212222 478
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||+..+.+
T Consensus 104 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 104 EKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 88887654444433322234566777777653 467889999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++..
T Consensus 184 l~~~L~~ 190 (290)
T PRK13634 184 MMEMFYK 190 (290)
T ss_pred HHHHHHH
Confidence 9998764
No 76
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=7.2e-29 Score=204.53 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=113.9
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-------CCcEEEEe
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-------PPDVATVL 129 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-------~~~~g~~i 129 (229)
++++++.|++. +.+++|++++|+|+||||||||+++|+|++ .|++|++.. +... ....+++.
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA---RPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 44555555543 348999999999999999999999999999 899999643 3222 12344433
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
+...+ ...+++.+++.......+. .....+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|
T Consensus 81 ~~~~~---~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 81 HQPGI---KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred Ccccc---CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22222 1225788887665433221 233456667776654 347788899999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++||...+..+.+++.+
T Consensus 155 EPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred CCCccCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 77
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.7e-29 Score=205.46 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=107.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
+.+.+|++++|+||||||||||+++|+|++ +|++|++. .+..+ ....+++. ++.... ..+++.+++.
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~~~-q~~~~~--~~~tv~enl~ 92 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLF-QENNLF--AHLTVEQNVG 92 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcCcCCHhHccEEEEe-cccccC--CCCcHHHHHh
Confidence 448999999999999999999999999999 89999954 33222 12356543 443322 2257777765
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+...............+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||...+.++.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 172 (211)
T cd03298 93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172 (211)
T ss_pred cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 432211111112234456667765543 467788999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 173 ~ 173 (211)
T cd03298 173 D 173 (211)
T ss_pred H
Confidence 4
No 78
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-28 Score=220.73 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=123.5
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------- 121 (229)
...++.+.+.+.|+... .|++||+++|+||||||||||+|+|+|++ .|++|++. ++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~---~p~sG~I~i~G~~i~~~~~~~l~~ 102 (400)
T PRK10070 26 EQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI---EPTRGQVLIDGVDIAKISDAELRE 102 (400)
T ss_pred hccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC---CCCCCEEEECCEECCcCCHHHHHH
Confidence 34466677788887652 38899999999999999999999999999 89999964 33222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al 197 (229)
....+++++...++. .+++.+|+.+.....+.........+.++++.++.. .+.++.+|||||+||+++|+|+
T Consensus 103 ~~~~~igyv~Q~~~l~~---~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL 179 (400)
T PRK10070 103 VRRKKIAMVFQSFALMP---HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL 179 (400)
T ss_pred HHhCCEEEEECCCcCCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHH
Confidence 124677554433322 268889887765544443322334566777766653 4678899999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+++|+||||++||+..+.++.+++..
T Consensus 180 ~~~P~iLLLDEPts~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 180 AINPDILLMDEAFSALDPLIRTEMQDELVK 209 (400)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998754
No 79
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=4.5e-29 Score=224.61 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=120.0
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDV 125 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~ 125 (229)
.++++++++.|+++. .|++||+++|+||||||||||+|+|+|++ +|++|++. .+... ...+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll---~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL---TPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC---CCCCcEEEECCEEcCcCCHHHHhcce
Confidence 356777888887653 38899999999999999999999999999 99999953 33222 2346
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhc--CCC--CCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhc
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--g~~--~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
+++. ++....+ .+++.+++.+.+..+ .+. ...+...+.+.++.++.. .+.++.+||+|||||+++|++|+.
T Consensus 80 g~v~-q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 80 ASVP-QDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EEEc-cCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 6654 3332222 267888776543211 111 122344566777766553 468889999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+|++|||||||++||+..+.++++++.+.
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 80
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=1.3e-28 Score=205.75 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=105.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++. .+..+ ....+++ .++........+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~-~q~~~~~~~~~~tv~ 102 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLL---KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV-FQDPMSSLNPRMTIG 102 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEccccchhhHHHhhccEEEE-ecCchhhcCCcCCHH
Confidence 48999999999999999999999999999 89999953 33221 1235554 344321112236788
Q ss_pred hhHHHHHHhcCCCCC-ccHHH-HHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 145 EDPKEAHARRGAPWT-FNPLL-LLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~-~~~~~-~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
+++.+.....+.... ..... ..+.++.++. ..+.++..||+||+||+++|++++.+|+++|+||||++||+..++
T Consensus 103 ~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 182 (228)
T cd03257 103 EQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182 (228)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 887654333221111 11111 1355665554 246778899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
.+.+++.+
T Consensus 183 ~l~~~l~~ 190 (228)
T cd03257 183 QILDLLKK 190 (228)
T ss_pred HHHHHHHH
Confidence 99998864
No 81
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.2e-29 Score=214.41 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=116.9
Q ss_pred hhhhhhhhhcCC-----------c-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRRE-----------I-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~-----------~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------- 121 (229)
++++++++.|++ . +.|++||+++|+|+||||||||+|+|+|++ .|++|++. ++..+
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL---KPSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEECccccccch
Confidence 345566666652 1 348999999999999999999999999999 99999953 33222
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhh
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a 194 (229)
...++++.+........ .++.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLFE--NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHHHhceEEEEeChhhhhcc--chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 12356644432211221 57888876544333322222234456777776653 4688899999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 190 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD 190 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=5.4e-29 Score=210.11 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=111.3
Q ss_pred hhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCc
Q 026996 65 LKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPD 124 (229)
Q Consensus 65 ~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~ 124 (229)
++++++.|+ +. +.+.+|++++|+||||||||||+++|+|++ +|++|++. ++..+ ...
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV---EPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 445555554 32 348999999999999999999999999999 89999954 33222 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhc--------CCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--------g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a 194 (229)
.+++. ++.... ..+++.+++.+..... +.........+.++++.++. ..+.++..||+||+||+++|
T Consensus 81 i~~v~-q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIF-QHYNLI--ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEc-CCCccc--ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 55543 332221 1257777765321110 11111223445666776554 34678889999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=9.7e-29 Score=208.23 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=111.6
Q ss_pred hhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC-----------Cc
Q 026996 65 LKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP-----------PD 124 (229)
Q Consensus 65 ~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~-----------~~ 124 (229)
++++++.|++ . +.+.+|++++|+||||||||||+++|+|++ .|++|++. ++..+. ..
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV---EPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEeccccCHhHHHHHHhc
Confidence 3455555554 2 348999999999999999999999999999 89999954 333221 12
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHh--------cCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a 194 (229)
.+++ .++.... ..+++.+++.+.... .+.........+.++++.++. ..+.++.+||+||+||+++|
T Consensus 80 i~~~-~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 80 IGMI-FQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred cEEE-cccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHH
Confidence 4553 3333221 125777776543211 111111223445566666554 34678889999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 84
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.7e-29 Score=212.52 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=112.1
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------CCcE
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----------PPDV 125 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----------~~~~ 125 (229)
++++++++|++. +.|.+|++++|+|+||||||||+|+|+|++ .|++|++. ++..+ ...+
T Consensus 3 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 3 ATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL---RPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred EEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCccEEEECCEEcccccCCHHHHHhhe
Confidence 445566666543 338899999999999999999999999999 89999953 33322 1235
Q ss_pred EEEeecCCc-cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 126 ATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 126 g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+++. ++.. .... .++.+++.+.....+.........+.++++.++. ..+.++..|||||+||+++|++++.+|+
T Consensus 80 ~~v~-q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 80 ATVF-QDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred EEEe-eChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 5543 3322 1111 2455666554333332221122334556665543 3467888999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+..+.+++.+
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRR 181 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 85
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.5e-29 Score=216.02 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=112.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC-CCC--------------------------------CC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK--------------------------------PP 123 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~-~~~--------------------------------~~ 123 (229)
.|++||+++|+|+||||||||+++|+|++ +|++|++... ... ..
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRR 105 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHh
Confidence 38999999999999999999999999999 9999995432 110 12
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
.+|++++........ .++.+++.+.....+.........+.++++.++.. .+.++..|||||+||+++|++++.+
T Consensus 106 ~ig~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 106 RVGVVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred ceEEEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 356755432222222 47888887665555544333345567778876653 4678899999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+||||++||+..+..+.+++.+
T Consensus 184 P~lLlLDEPt~~LD~~~~~~l~~~l~~ 210 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQGVKEILEIFDN 210 (305)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 86
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=1.7e-28 Score=199.96 Aligned_cols=146 Identities=19% Similarity=0.164 Sum_probs=107.3
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------CCcEEEEeecCCc-cccCccCCh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----------PPDVATVLPMDGF-HLYLSQLDA 143 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----------~~~~g~~i~~~~~-~~~~~~l~~ 143 (229)
+.|++|++++|+|+||||||||+++|+|++ +|++|++. ++... ....+++. ++.. .... .++
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~-q~~~~~~~~--~tv 86 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLL---RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVF-QDPDDQLFA--ADV 86 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceeEEECCEEccccccchHHHHhhEEEEe-cChhhcccc--ccH
Confidence 459999999999999999999999999999 89999953 33221 11345543 3321 1121 477
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||+..++.+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 166 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 7887654332232211122345566665544 35678889999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 026996 222 SSMFDE 227 (229)
Q Consensus 222 ~~ll~~ 227 (229)
.+++.+
T Consensus 167 ~~~l~~ 172 (190)
T TIGR01166 167 LAILRR 172 (190)
T ss_pred HHHHHH
Confidence 998865
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-28 Score=210.30 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=117.3
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC---CCcEEEE
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK---PPDVATV 128 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~---~~~~g~~ 128 (229)
...++++++++.|++.. .|.+|++++|+||||||||||+|+|+|++ .|++|++..++ .. ....+++
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE---TPSAGELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEHHHhhCceEEE
Confidence 34577888888887652 38899999999999999999999999999 89999964433 21 2345664
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
.+...++ ...++.+++.+... . .....+.++++.++.. .+.++..|||||+||+++|++++.+|+++|+
T Consensus 87 ~q~~~l~---~~~tv~enl~~~~~-----~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllL 157 (257)
T PRK11247 87 FQDARLL---PWKKVIDNVGLGLK-----G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLL 157 (257)
T ss_pred ecCccCC---CCCcHHHHHHhccc-----c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4332222 12577777654211 1 1124456667766553 4677889999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||+..+..+.+++.+
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 158 DEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred eCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999888754
No 88
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=2.7e-28 Score=202.30 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=107.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
+.+++|++++|+|+||||||||+|+|+|++ +|++|++.. +..+ ....+++.+...++ ..+++.+++.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~---~~~t~~en~~ 92 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLF---AHLTVRQNIG 92 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEcccCChhccceEEEeccCccC---CCCcHHHHHH
Confidence 448999999999999999999999999999 899999543 3222 12355543332222 2257878876
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+...............+.++++.++. ..+..+..||+||+||+++|++++.+|+++|+||||++||...+..+.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 172 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK 172 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 43221111111123345566776554 3467788999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 173 ~ 173 (213)
T TIGR01277 173 Q 173 (213)
T ss_pred H
Confidence 5
No 89
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.7e-28 Score=202.84 Aligned_cols=155 Identities=16% Similarity=0.070 Sum_probs=113.3
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC-----CCcEEEEe
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK-----PPDVATVL 129 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~-----~~~~g~~i 129 (229)
++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ .|++|++..++ .. ....+++.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEeCcchhhHhhcEEec
Confidence 4455666666543 348899999999999999999999999999 89999964332 21 11234433
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
+...+. ...++.+++.+.....+ .....+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|
T Consensus 80 ~~~~~~---~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 80 HRNAMK---PALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred CCCcCC---CCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 222221 12577777765433222 1223456677766543 46788899999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++||...+.++.+++.+
T Consensus 153 EPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 153 EPTAALDAAAVALFAELIRA 172 (207)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999999999998864
No 90
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-28 Score=213.74 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=111.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEEeecCCccccCccCCh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
.|.+|++++|+|+||||||||+|+|+|++ .|++|++. ++..+ ...+|++++........ .++
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv 102 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLL---QPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE--ETV 102 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc--chH
Confidence 38999999999999999999999999999 99999953 33221 12356655433212222 478
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
.+++.+.....+.+.......+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~ 182 (288)
T PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIE 182 (288)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHH
Confidence 88887655554443322334456667766652 467888999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++..
T Consensus 183 l~~~l~~ 189 (288)
T PRK13643 183 MMQLFES 189 (288)
T ss_pred HHHHHHH
Confidence 9998864
No 91
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=2e-28 Score=207.52 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=114.5
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------- 121 (229)
++++++++.|++. +.+++|++++|+|+||||||||+++|+|++ .|++|++. ++..+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE---QPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEccccccccchhhHH
Confidence 4566666767553 338899999999999999999999999999 89999953 33211
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHh-cCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~ 195 (229)
....+++ .++.... ...++.+++.+.... .+.........+.++++.++.. .+.++.+||+||+||+++|+
T Consensus 81 ~~~~~~i~~v-~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 81 RQLRQHVGFV-FQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred HHhhhhEEEE-ecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHH
Confidence 1234553 3333221 125778887653321 2221111223455666766543 46778899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+||||++||...+..+.+++.+
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 92
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-28 Score=207.26 Aligned_cols=159 Identities=18% Similarity=0.107 Sum_probs=113.6
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-------------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK------------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~------------- 121 (229)
+.++++++.|++. +.+++||+++|+|+||||||||+|+|+|++ .|++|++.. +...
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEecccccccchhhHHH
Confidence 3455566666544 338899999999999999999999999999 899999643 3221
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHH-HHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al 197 (229)
...++++. ++.... ..+++.+++... ....+.........+.+.++.++.. .+.++..||+||+||+++|+++
T Consensus 80 ~~~~i~~~~-q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 80 LRRNVGMVF-QQYNLW--PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHhheEEEe-cCcccc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 11345543 333211 225777877542 2222222211223455666665543 4677889999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+++|+|||+++||+..+..+.+++..
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
No 93
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=2.2e-28 Score=200.62 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=105.9
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC-------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK-------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
.+.+|++++|+||||||||||+++|+|++ .|++|++..++ .. ....+++. ++... ....++.+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~-q~~~~--~~~~tv~~~l~ 95 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLL---RPDSGEVRWNGTALAEQRDEPHRNILYLG-HLPGL--KPELSALENLH 95 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccchHHhhhheEEec-cCccc--ccCCcHHHHHH
Confidence 38899999999999999999999999999 89999964332 21 12345533 33221 12257788776
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.....+ .....+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||...+..+.+++.
T Consensus 96 ~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 171 (198)
T TIGR01189 96 FWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171 (198)
T ss_pred HHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 5443322 112345666665554 3467889999999999999999999999999999999999999999998886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 172 ~ 172 (198)
T TIGR01189 172 A 172 (198)
T ss_pred H
Confidence 4
No 94
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=6.3e-29 Score=205.75 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=121.3
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCC-------c--
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-------D-- 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~~-------~-- 124 (229)
.+++++++|+||+... +++||++|||||||||||||+|+|+|++ +|++|++ +.+..+.. +
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~---~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc---cCCCceEEECCcccCCCCHHHHHhcc
Confidence 4567889999998843 8899999999999999999999999999 9999995 45544411 1
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhc-------CCC-----CCccHHHHHHHHHhhhh--cCCCCCCCCCccccch
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-------g~~-----~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~R 190 (229)
++..+|..-.+ ..+++.||+....... +.+ .....++..++++.++. ..+.+...||+|+++|
T Consensus 81 i~RTFQ~~rlF---~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 81 IARTFQITRLF---PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred ceeeccccccc---CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHH
Confidence 23333333222 2379999987653321 111 12223455677776665 3577888999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+||+.+|++|+||||.+++.+....++.+++.+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~ 194 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999898888764
No 95
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.1e-28 Score=204.47 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=119.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++||.+||||+||||||||+|+|+|.+ +|++|++...+.+.+- +....- .+++++..+|+.+.....|
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~---~Pt~G~v~v~G~v~~l----i~lg~G--f~pelTGreNi~l~~~~~G 118 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIY---KPTSGKVKVTGKVAPL----IELGAG--FDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCcc---CCCCceEEEcceEehh----hhcccC--CCcccchHHHHHHHHHHhC
Confidence 459999999999999999999999999999 9999996554433221 111111 2223799999999999999
Q ss_pred CCCCccHHHHHHHHH--hhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 156 APWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+...+..+.+.++.+ .|+.+.+.|+++||.||+.|++++.|+..+|+|||+||+++..|+.++++..+.+++.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 877666666666666 7788899999999999999999999999999999999999999999999999888764
No 96
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.95 E-value=2.1e-28 Score=201.39 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=110.1
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcEEEEe
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDVATVL 129 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~g~~i 129 (229)
++++++.|++. +.|++|+++||+|+||||||||+++|+|++ .|++|++. .+... ....+++.
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS---PPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEecccccHHhhhheEEec
Confidence 34455555443 348999999999999999999999999999 89999964 33221 12344433
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
++.... ..+++.+++..... ......+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|
T Consensus 80 -q~~~~~--~~~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 80 -HAPGIK--TTLSVLENLRFWHA------DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred -cccccC--CCcCHHHHHHhhcc------cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 222211 12577777654321 11344556667765543 46778899999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++||+..++++.+++.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998864
No 97
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.3e-28 Score=206.11 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=112.5
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC----------CcEE
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP----------PDVA 126 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~----------~~~g 126 (229)
++++++.|++. +.+.+||+++|+|+||||||||+++|+|++ .|++|++. ++..+. ...+
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE---EITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCChhHHHHhhceE
Confidence 44555555443 338899999999999999999999999999 89999953 332221 1345
Q ss_pred EEeecCCccccCccCChhhhHHHHHH-hcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
++.+...++ ...++.+++.+... ..+.........+.++++.++.. .+.++..||+||+||+++|++++.+|++
T Consensus 81 ~~~q~~~~~---~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 81 MVFQQFYLF---PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred EEecccccC---CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 543322222 12577777765322 12222222233456667766543 4677889999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+||||++||+..+..+.+++.+
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 98
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=206.99 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=113.8
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCcE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~~ 125 (229)
++++++++.|++. +.+++|++++|+|+||||||||+++|+|++ .|++|++. .+... ....
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4566677777654 238899999999999999999999999999 89999954 33221 1235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcC-CCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+++. ++..... .+++.+++........ .........+.++++.++. ..+.++..||+||+||+++|++++.+|+
T Consensus 81 ~~~~-q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 81 GYLP-QEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred EEec-cCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5533 3332211 2577777765432211 1111122345666666554 2367788999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+|||+++||+..+..+.+++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999988887754
No 99
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.7e-28 Score=212.41 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=109.5
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEEeecCCccccCccCCh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
.|++|+++||+|+||||||||+|+|+|++ .|+.|++. ++..+ ...+|++++........ .++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv 103 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALL---KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE--DTV 103 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch--hhH
Confidence 38999999999999999999999999999 89999953 33222 12456654432211111 367
Q ss_pred hhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+.+
T Consensus 104 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~ 183 (286)
T PRK13646 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183 (286)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 77776554443333222234556677766653 357789999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++.+
T Consensus 184 l~~~l~~ 190 (286)
T PRK13646 184 VMRLLKS 190 (286)
T ss_pred HHHHHHH
Confidence 9998865
No 100
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=6.8e-28 Score=215.56 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=121.5
Q ss_pred hhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-----CC----------
Q 026996 64 SLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-----VK---------- 121 (229)
Q Consensus 64 ~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-----~~---------- 121 (229)
.-..+.+.|+... .|++||+++|+|+||||||||+|+|+|++ .|++|++..++ ..
T Consensus 26 ~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~---~p~~G~I~idG~~~~~~i~~~~~~~l~~ 102 (382)
T TIGR03415 26 TREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN---PVSRGSVLVKDGDGSIDVANCDAATLRR 102 (382)
T ss_pred CHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEECCEecccccccCCHHHHHH
Confidence 3455777887663 38899999999999999999999999999 99999964332 11
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al 197 (229)
...++++++...++. .+++.+|+.+.....+.........+.++++.++.. .+.++.+|||||+||+++|+++
T Consensus 103 ~r~~~i~~vfQ~~~l~p---~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL 179 (382)
T TIGR03415 103 LRTHRVSMVFQKFALMP---WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF 179 (382)
T ss_pred HhcCCEEEEECCCcCCC---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 024676554433322 268899988765544543333344567777766653 4678889999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+|+|+||||++||+..+.++.+++.+
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-28 Score=208.46 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=113.6
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g 126 (229)
++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ +|++|++..++ .. ....+
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL---SPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3455666666554 348899999999999999999999999999 89999964332 21 12345
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh------
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG------ 198 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~------ 198 (229)
++. ++..... ..++.+++.+.....+.........+.++++.++. ..+..+..||+||+||+++|++++
T Consensus 80 ~~~-q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 80 VLP-QHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred EEc-cCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 543 3332212 25777776654322221111123345566666554 347788999999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|+++|+||||++||+..+..+.+++.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 59999999999999999999999988764
No 102
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-28 Score=211.31 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=117.0
Q ss_pred hhhhhhhhhcCC---------c-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 63 TSLKVLCSQRRE---------I-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 63 ~~~~~l~~~~~~---------~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
+++++++++|++ . +.|++|++++|+|+||||||||+++|+|++ .|++|++ +++..+ ..
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL---EAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEECCcCcHHHHHh
Confidence 455566666642 1 338999999999999999999999999999 9999995 444322 12
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
..++++ ++...... ..++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|
T Consensus 82 ~i~~v~-q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 82 KIGMVF-QNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred hceEEE-cChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356644 33211111 15788887765444443322223455667776554 346788999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++||+..+.++.+++..
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 103
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-28 Score=210.92 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=116.2
Q ss_pred hhhhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcE
Q 026996 63 TSLKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~ 125 (229)
++++++++.|+ +. +.|++|+++||+|+||||||||+++|+|++ +|++|++. .+... ...+
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY---LPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEECCCCCHHHHHhhE
Confidence 45556666664 22 338999999999999999999999999999 89999963 33222 1235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
+++.+....... ..++.+++.+.....+.........+.++++.++. ..+.++..|||||+||+++|+|++.+|++
T Consensus 82 ~~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 82 GLVFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred EEEecChhhhhc--cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 664433221112 14788887654433333222223345666665554 35678899999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|||+++||+..+.++.+++..
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 104
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=3.4e-28 Score=206.00 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=113.4
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cccc-cCCCCCC--------
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVKP-------- 122 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-----~G~~-~~~~~~~-------- 122 (229)
+++++++.|++. +.|++||+++|+|+||||||||+++|+|++ .|+ +|++ +++....
T Consensus 3 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 3 EIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN---DLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC---CCCcCCCCceEEEECCEEccccccchHH
Confidence 345556666543 338999999999999999999999999999 888 9995 3333221
Q ss_pred --CcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhhc------CCCCCCCCCccccchhhh
Q 026996 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 123 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~~ 193 (229)
...+++. ++... . . .++.+++.+.....+. ........+..+++.++.. .+.++..||+||+||+++
T Consensus 80 ~~~~i~~v~-q~~~~-~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 80 LRRRVGMVF-QKPNP-F-P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred HHhheEEEe-cCccc-C-C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 2355543 33221 1 2 5777887654433332 1112223456666666543 357788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+||||++||+..+..+.+++..
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-28 Score=210.89 Aligned_cols=161 Identities=17% Similarity=0.116 Sum_probs=119.0
Q ss_pred chhhhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC----------C
Q 026996 62 KTSLKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~----------~ 122 (229)
.+++++++++|+ +. +.|++||++||+|+||||||||+++|+|++ .|++|++ +.+... .
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~---~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL---KPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCccEEEECCEECCCCcchHHHHH
Confidence 356677777775 33 238899999999999999999999999999 8999995 333222 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
..+|++.+........ .++.+++.+.....+.+.......+..+++.++. ..+.++..||+||+||+++|++++.+
T Consensus 82 ~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 82 ESVGMVFQDPDNQLFS--ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred hhEEEEecCcchhhcc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2356644332222121 4788887665444443332233455666776655 34788999999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+|||+++||+..+.++.+++..
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~ 186 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVE 186 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999888764
No 106
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=3.6e-28 Score=203.19 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=111.6
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcccc-CCCCC----------CCc
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSF-DSQVK----------PPD 124 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~--~~~p~~G~~~-~~~~~----------~~~ 124 (229)
++++++.|++. +.|++|++++|+|+||||||||+++|+|++. ...|++|++. .+... ...
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRR 82 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhh
Confidence 34455555543 3388999999999999999999999999861 0037899953 33222 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhhcC--CCC--CCCCCccccchhhhhhhhhc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~lSgG~k~Rl~~a~al~~ 199 (229)
.+++. ++.... .+++.+++.+.....+.... .....+.++++.++... +.. +..|||||+||+++|++++.
T Consensus 83 i~~~~-q~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 83 VGMVF-QKPNPF---PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred EEEEe-cCchhc---cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 55543 443322 26888887654433332111 12344566677665532 344 58999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||+..+.++.+++.+
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~ 186 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAE 186 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-28 Score=205.89 Aligned_cols=159 Identities=19% Similarity=0.107 Sum_probs=114.5
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCccc-cCCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASS-FDSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~-~~~~~~-------- 121 (229)
+++++++++|++. +.|++|++++|+|+||||||||+++|+|++ . |++|++ +++..+
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI---ELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4556666666653 238899999999999999999999999998 5 479995 333322
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC--CCccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~ 193 (229)
...++++. ++.... ..+++.+++.+.....+.. .......+.+.++.++. ..+.++..||+||+||+++
T Consensus 81 ~~~i~~v~-q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 81 RRRVQMVF-QIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred hccEEEEe-ccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 12456644 333211 1257888877654322221 11112345566666654 2467788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+||||++||+..+.++.+++.+
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 108
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=2.7e-28 Score=214.98 Aligned_cols=147 Identities=15% Similarity=0.120 Sum_probs=111.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.|++||++||+|+||||||||+++|+|++ .|++|++ +++..+ ...+++ +.++.+....+.+++.
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~---~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~tv~ 118 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLV---KATDGEVAWLGKDLLGMKDDEWRAVRSDIQM-IFQDPLASLNPRMTIG 118 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCC---CCCCcEEEECCEECCcCCHHHHHHHhCceEE-EecCchhhcCCCCCHH
Confidence 48999999999999999999999999999 8999995 344332 124566 4455421122336788
Q ss_pred hhHHHHHHhc--CCCCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 145 EDPKEAHARR--GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 145 ~~~~~~~~~~--g~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
+++.+..... +.........+.++++.++. ..+.++.+|||||+||+++|+|++.+|++||+||||++||...+.
T Consensus 119 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 119 EIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198 (331)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 8877654332 22222223445667776665 247888999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
++.+++..
T Consensus 199 ~i~~lL~~ 206 (331)
T PRK15079 199 QVVNLLQQ 206 (331)
T ss_pred HHHHHHHH
Confidence 99998865
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-28 Score=210.09 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=114.0
Q ss_pred hhhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---------CCcE
Q 026996 64 SLKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---------PPDV 125 (229)
Q Consensus 64 ~~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~---------~~~~ 125 (229)
+++++++.|+ +. +.|++|++++|+|+||||||||+|+|+|++ +|++|++ +.+... ...+
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 3 RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL---RPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEECCccccHHHHHhhe
Confidence 3445555563 22 348999999999999999999999999999 8999995 333222 1235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
+++.+....... ..++.+++.+.....+.......+.+.++++.++. ..+.++..||+||+||+++|+|++.+|++
T Consensus 80 ~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (274)
T PRK13644 80 GIVFQNPETQFV--GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157 (274)
T ss_pred EEEEEChhhhcc--cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 554433221111 14778887655443333222223345566665554 34678899999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+||||++||+..+..+.+++.+
T Consensus 158 llLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999988864
No 110
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=7.6e-29 Score=211.54 Aligned_cols=143 Identities=18% Similarity=0.179 Sum_probs=120.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------------CCcEEEEeecCCccccCccCC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------------PPDVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------------~~~~g~~i~~~~~~~~~~~l~ 142 (229)
+.++.|||..|+|-||||||||+|+|++++ .|++|++ +++..+ ..+...+++..+..++ .+
T Consensus 49 l~v~~GeIfViMGLSGSGKSTLvR~~NrLi---ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh---rt 122 (386)
T COG4175 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLI---EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH---RT 122 (386)
T ss_pred eeecCCeEEEEEecCCCCHHHHHHHHhccC---CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc---hh
Confidence 448999999999999999999999999999 9999996 444433 2345565665555544 58
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+.+|..+.....|.+..+..+...+.++.++. ..+.++.+|||||||||.+||||+.+|+|||+||||+.|||--+.+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 99999999999999888888888999996665 5688999999999999999999999999999999999999976666
Q ss_pred HHHH
Q 026996 221 VSSM 224 (229)
Q Consensus 221 ~~~l 224 (229)
+.+-
T Consensus 203 mQde 206 (386)
T COG4175 203 MQDE 206 (386)
T ss_pred HHHH
Confidence 5553
No 111
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=4.6e-28 Score=202.64 Aligned_cols=157 Identities=16% Similarity=0.102 Sum_probs=114.7
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCc
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 134 (229)
.+.+.++++.|++..+ |++|++++|+|+||||||||+++|+|++ +|++|++..++... ........
T Consensus 22 ~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~----~~~~~~~~ 94 (224)
T cd03220 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY---PPDSGTVTVRGRVS----SLLGLGGG 94 (224)
T ss_pred hhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc----hhhccccc
Confidence 3677888888988733 8899999999999999999999999999 89999965433110 00111111
Q ss_pred cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCC
Q 026996 135 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212 (229)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~ 212 (229)
....+++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++
T Consensus 95 --~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 95 --FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred --CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11236788887665443332221112234455555443 34678899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHh
Q 026996 213 LDGGVWKDVSSMFDE 227 (229)
Q Consensus 213 LD~~~~~~~~~ll~~ 227 (229)
||...+..+.+++..
T Consensus 173 LD~~~~~~~~~~l~~ 187 (224)
T cd03220 173 GDAAFQEKCQRRLRE 187 (224)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888764
No 112
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.95 E-value=5.8e-28 Score=202.03 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=116.5
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcE
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDV 125 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~ 125 (229)
.++++++++.|++. +.+++||+++|+||||||||||+++|+|++ +|++|++..++ .. ....
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 35667777777654 338899999999999999999999999998 89999964332 21 1234
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+++ .++.... . .++.+++.+.....+. ......+.++++.++.. .+.++.+||+||+||+++|++++.+|+
T Consensus 84 ~~~-~q~~~l~-~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 84 SYC-AQTPTLF-G--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred EEE-ecccccc-c--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 553 3443322 1 3777777654322221 11234456777776652 467889999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+..+.+++.+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 113
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=4.2e-28 Score=201.46 Aligned_cols=158 Identities=16% Similarity=0.062 Sum_probs=116.7
Q ss_pred cchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC-----CcEEE
Q 026996 61 NKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP-----PDVAT 127 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~-----~~~g~ 127 (229)
..+++++++++|++.. .+++|++++|+|+||||||||+++|+|++ .|++|++.. +..+. ...++
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL---HVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCeeEEECCEEccchhhhhceEE
Confidence 3567777888876642 38899999999999999999999999999 899999643 32221 12455
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
+ .++... ...+++.+++.+.....+. .......+.++.++. ..+.++..||+||+||+++|++++.+|+++|
T Consensus 87 ~-~q~~~~--~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 87 L-GHLPGL--KADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred e-ecCccc--ccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3 333322 1225777877654332221 122344556665553 3477888999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||+++||+..++.+.+++.+
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISA 182 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 114
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.5e-28 Score=204.15 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=113.1
Q ss_pred hhhhhhhhcCCc-----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEeec
Q 026996 64 SLKVLCSQRREI-----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLPM 131 (229)
Q Consensus 64 ~~~~l~~~~~~~-----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~~ 131 (229)
++++++++|++. +.+++|+++||+|+||||||||+++|+|++ .|++|++. ++... ....+++.+.
T Consensus 3 ~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 3 KLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL---TPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCeecCcCChhhccEEEEecc
Confidence 345555666533 448999999999999999999999999999 89999954 33322 1235554433
Q ss_pred CCccccCccCChhhhHHHHHHhcCCC-CCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 132 DGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
..++ ..+++.+++.+.... ... .......+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+||
T Consensus 80 ~~~~---~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 80 NNLF---SHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred cccc---cCCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2222 125777776543211 111 11223345666776654 3578888999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||...++.+.+++.+
T Consensus 156 P~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 115
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=5.9e-28 Score=201.53 Aligned_cols=145 Identities=21% Similarity=0.184 Sum_probs=107.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC--C---CC------------CCcEEEEeecCCccccCc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--Q---VK------------PPDVATVLPMDGFHLYLS 139 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~--~---~~------------~~~~g~~i~~~~~~~~~~ 139 (229)
.|.+||+++|+|+||||||||+++|+|++ .|++|++..+ + .. ....+++ .++.... .
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~-~q~~~~~--~ 103 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANY---LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYV-SQFLRVI--P 103 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEE-ecccccC--C
Confidence 48999999999999999999999999999 8999996442 2 11 1234554 3333221 2
Q ss_pred cCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh
Q 026996 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 140 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~ 216 (229)
.+++.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+.
T Consensus 104 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 183 (224)
T TIGR02324 104 RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183 (224)
T ss_pred CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 257777776543333322222233456667766553 25678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 026996 217 VWKDVSSMFDE 227 (229)
Q Consensus 217 ~~~~~~~ll~~ 227 (229)
.++.+.+++..
T Consensus 184 ~~~~l~~~l~~ 194 (224)
T TIGR02324 184 NRQVVVELIAE 194 (224)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 116
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=5.1e-28 Score=204.15 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=113.6
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------CcE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~~ 125 (229)
++++++++.|++. +.+++|++++|+|+||||||||+++|+|++ +|++|++. ++.... ...
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT---RPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3455666666543 238899999999999999999999999999 89999954 332221 124
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcC--------CCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhh
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~ 195 (229)
+++. ++.... ..+++.+++.+...... .........+.+.++.++.. .+.++..||+||+||+++|+
T Consensus 80 ~~~~-q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKF-QKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEec-cccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 5533 332221 22578887765432110 00111233456666665543 36778899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+||||++||+..+..+.+++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 117
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5e-28 Score=208.50 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=115.7
Q ss_pred hhhhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------CcE
Q 026996 63 TSLKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP--------PDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~--------~~~ 125 (229)
++++++++.|+ .. +.|++||+++|+|+||||||||+|+|+|++ +|++|++. .+.... ...
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL---KPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCcCCHHHHHhhe
Confidence 45566777774 22 348999999999999999999999999999 89999964 333221 235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
+++.+....... ..++.+++.+.....+.........+.+.++.++. ..+..+..||+||+||+++|++++.+|++
T Consensus 81 ~~v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l 158 (277)
T PRK13652 81 GLVFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158 (277)
T ss_pred EEEecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 664433221112 14778887654433333222222345566665554 35678899999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+||||++||+..+.++.+++.+
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 118
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.1e-28 Score=210.96 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=114.0
Q ss_pred hhhhhhhhhcCCc------------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI------------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~------------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------- 121 (229)
++++++++.|++. +.|++|+++||+|+||||||||+|+|+|++ .|++|++. .+..+
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI---ISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEccccccccc
Confidence 5566777777642 338999999999999999999999999999 89999953 33211
Q ss_pred -----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhh
Q 026996 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~ 193 (229)
...++++.+...+.... .++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 12345543332221121 3677777654333232211112334556665554 2467788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888764
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7e-28 Score=204.66 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=113.5
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCcccc-CCCCC----------C
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSF-DSQVK----------P 122 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~~-~~~~~----------~ 122 (229)
+++++++++|++. +.|++|++++|+|+||||||||+|+|+|++.... |++|++. ++... .
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 5566777777654 2389999999999999999999999999862111 5899953 33222 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhhc------CCCCCCCCCccccchhhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~~a~ 195 (229)
..++++ .++... +. .++.+++.+.....+... ......+.+.++.++.. .+.++..|||||+||+++|+
T Consensus 87 ~~i~~v-~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 87 RRVGMV-FQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred hcEEEE-ecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 235554 333322 22 377788765543333211 11223445556655432 35678899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+||||++||+..+..+.+++.+
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 120
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.95 E-value=8.4e-28 Score=202.50 Aligned_cols=146 Identities=17% Similarity=0.091 Sum_probs=107.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC-------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK-------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
.+++|++++|+|+||||||||+++|+|++ +|++|++..++ .. ....+++.++..... ..+++.+++.
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~tv~e~l~ 117 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLL---QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW--WDLPVIDSFY 117 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEccccchhhcccEEEEcCCccccC--CCCcHHHHHH
Confidence 48899999999999999999999999999 89999964332 11 123455333332221 2257777776
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.....+.........+..+++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||+..++++.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 197 (236)
T cd03267 118 LLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197 (236)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 54443333222222334555665443 3467788999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 198 ~ 198 (236)
T cd03267 198 E 198 (236)
T ss_pred H
Confidence 4
No 121
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=6.7e-28 Score=205.51 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=114.1
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCC-----CC------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQV-----KP------ 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~-----~~------ 122 (229)
.++++++++.|++.. .+++|++++|+|+||||||||+++|+|++ +|++|++. .+.. ..
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL---APDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCccccccccccCCHHH
Confidence 356677777776542 38899999999999999999999999999 89999964 3332 21
Q ss_pred ------CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhhc---CCCCCCCCCccccchhh
Q 026996 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 123 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~ 192 (229)
...+++. ++........++..+++.+.....+... ......+.++++.++.. .+.++..||+||+||++
T Consensus 83 ~~~~~~~~i~~v~-q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 83 RRRLLRTEWGFVH-QHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHhhcceEEEe-eCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 1255543 3322111222455556543322222111 11123455667766653 35778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||+..+.++.+++..
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888754
No 122
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.7e-28 Score=212.70 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=110.8
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.|.+||++||+|+||||||||+++|+|++ .|++|++ +.+..+ ...+++ +.++.+....+.+++.
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~---~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~ 112 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIE---TPTGGELYYQGQDLLKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVG 112 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCcEEEECCEEcCcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHH
Confidence 48999999999999999999999999999 8999995 333222 234566 4455432233335666
Q ss_pred hhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 145 EDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 145 ~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+++....... +.........+.++++.++.. .+.++.+|||||+||+++|+|++.+|++||+||||++||...+.+
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~ 192 (327)
T PRK11308 113 QILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQ 192 (327)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHH
Confidence 6655433322 222222334567778776653 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++.+
T Consensus 193 i~~lL~~ 199 (327)
T PRK11308 193 VLNLMMD 199 (327)
T ss_pred HHHHHHH
Confidence 9998865
No 123
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-28 Score=209.06 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=106.8
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEEeecCC-ccccCccCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATVLPMDG-FHLYLSQLD 142 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~i~~~~-~~~~~~~l~ 142 (229)
.|++|++++|+|+||||||||+++|+|++ .|++|++. .+... ...++++ .++. ..... .+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~-~q~~~~~~~~--~t 102 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLH---VPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLV-FQFPESQLFE--ET 102 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccccccCHHHHHhheEEE-eeChhhhhcc--cc
Confidence 48999999999999999999999999999 89999964 33222 1235554 3432 11121 47
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
+.+++.+.....+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||+..++
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (280)
T PRK13649 103 VLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182 (280)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 788876544333322211223345566665553 36788899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
.+.+++.+
T Consensus 183 ~l~~~l~~ 190 (280)
T PRK13649 183 ELMTLFKK 190 (280)
T ss_pred HHHHHHHH
Confidence 99998764
No 124
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=4.6e-28 Score=207.40 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=109.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC-----------CCcEEEEeecCCccccCccCCh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK-----------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~-----------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
+.|++||+++|+|+||||||||+++|+|++ +|++|++..++ .+ ...++++ .++........+++
T Consensus 32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v-~q~~~~~~~~~~tv 107 (265)
T TIGR02769 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLE---KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLV-FQDSPSAVNPRMTV 107 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEccccCHHHHHHHhhceEEE-ecChhhhcCCCCCH
Confidence 348999999999999999999999999999 89999964332 22 1235654 34421111122577
Q ss_pred hhhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 144 MEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 144 ~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
.+++....... +.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~ 187 (265)
T TIGR02769 108 RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187 (265)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 77765443322 222222334566777777653 36788899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
.+.+++.+
T Consensus 188 ~l~~~l~~ 195 (265)
T TIGR02769 188 VILELLRK 195 (265)
T ss_pred HHHHHHHH
Confidence 99888864
No 125
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.8e-28 Score=212.06 Aligned_cols=164 Identities=16% Similarity=0.065 Sum_probs=119.9
Q ss_pred cccchhhhhhhhhcCCc------------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC----
Q 026996 59 VQNKTSLKVLCSQRREI------------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK---- 121 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~------------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~---- 121 (229)
+...+++++++++|++. +.|++|+++||+|+||||||||+++|+|++ .|++|++..++ ..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~---~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI---KSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECCEEccccc
Confidence 34457788888888631 238999999999999999999999999999 99999954321 11
Q ss_pred --------------------CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCC
Q 026996 122 --------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV 178 (229)
Q Consensus 122 --------------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~ 178 (229)
...++++++........ .++.+++.+.....+.........+.++++.++.. .+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 12356654433222222 37778876544333332222233456667766653 467
Q ss_pred CCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 179 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 179 ~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++..|||||+||+++|++++.+|+++|+||||++||+..+.++.+++..
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~ 221 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999998864
No 126
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=7.9e-28 Score=197.76 Aligned_cols=153 Identities=16% Similarity=0.019 Sum_probs=111.5
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-------CCcEEEE
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-------PPDVATV 128 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-------~~~~g~~ 128 (229)
.++++++.|++. +.+++||++||+|+||||||||+++|+|++ +|++|++.. +... ....+++
T Consensus 3 ~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 3 DVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEECCCccccCHHHHHhheEEe
Confidence 345556666544 338899999999999999999999999999 899999643 3322 1234543
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
.++.... ...++.+++.+.... . .....+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+
T Consensus 80 -~q~~~~~--~~~tv~~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil 151 (200)
T PRK13540 80 -GHRSGIN--PYLTLRENCLYDIHF---S--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151 (200)
T ss_pred -ccccccC--cCCCHHHHHHHHHhc---C--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3332211 225777776643211 1 122345666665544 34677789999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
|||+++||+..++.+.+++.+
T Consensus 152 DEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 152 DEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred eCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 127
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.4e-28 Score=212.30 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=115.4
Q ss_pred hhhhhhhhhcCC----------c-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC----CCCccc-cCCCCCC----
Q 026996 63 TSLKVLCSQRRE----------I-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW----PQKASS-FDSQVKP---- 122 (229)
Q Consensus 63 ~~~~~l~~~~~~----------~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~----p~~G~~-~~~~~~~---- 122 (229)
++++++++.|+. + +.|++||++||+|+||||||||+++|+|++ . |++|++ +++..+.
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll---~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI---DYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCCCcceEEEECCEECCcCCH
Confidence 445556666544 1 348999999999999999999999999998 5 488985 4443321
Q ss_pred --------CcEEEEeecCCccccCccCChhhhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc-----CCCCCCCCCcccc
Q 026996 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG 188 (229)
Q Consensus 123 --------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~k 188 (229)
..+++ +.++.+....+.+++.+++....... +.........+.++++.++.. .+.++.+|||||+
T Consensus 81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 13566 44554322333356555544433322 222223345567778877653 3578899999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++|+|++.+|++||+||||++||...+.++.+++.+
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~ 198 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 128
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.95 E-value=6.8e-28 Score=203.32 Aligned_cols=159 Identities=20% Similarity=0.072 Sum_probs=108.8
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------CcEEE
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PDVAT 127 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~~g~ 127 (229)
++++++.|++. +.|++|++++|+||||||||||+|+|+|++. ..|++|++. .+.... ...++
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 44556666543 3389999999999999999999999999830 069999964 332221 11344
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcC-CC-----C-CccHHHHHHHHHhhhhc---CCCCCC-CCCccccchhhhhhh
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-----W-TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGDPVEDDIL 196 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g-~~-----~-~~~~~~~~~~l~~l~~~---~~~~~~-~lSgG~k~Rl~~a~a 196 (229)
+ .++.... ..+++.+++........ .. . ......+.++++.++.. .+.++. .||+||+||+++|++
T Consensus 82 v-~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 82 A-FQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred e-ecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 3 3333221 22567777655432211 10 0 11123455666666553 345665 599999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++|+||||++||...++.+.+++.+
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINR 189 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 129
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.95 E-value=5.9e-28 Score=205.72 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=116.2
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------- 121 (229)
++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ .|++|++. .+..+
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccccccccccccc
Confidence 5667777777654 238899999999999999999999999999 89999953 33221
Q ss_pred --------CCcEEEEeecCCccccCccCChhhhHHHHHH-hcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccc
Q 026996 122 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (229)
Q Consensus 122 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~ 189 (229)
....+++. ++.... ..+++.+++.+... ..+.........+.++++.++.. .+.++..||+||+|
T Consensus 83 ~~~~~~~~~~~i~~v~-q~~~l~--~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 83 DKNQLRLLRTRLTMVF-QHFNLW--SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred cchHHHHHhhceEEEe-cCcccC--CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 12345543 333221 12578888765332 22222122234556677776653 25678899999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|++++.+|+++|+||||++||...+..+.+++.+
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
No 130
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-28 Score=208.25 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=116.3
Q ss_pred chhhhhhhhhcC--Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRR--EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~--~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.++++++++.|+ +. +.+++|++++|+||||||||||+++|+|++ .|++|++. .+... ..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL---KPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEecCcCCHHHHhc
Confidence 356677777774 22 348899999999999999999999999999 89999954 33222 12
Q ss_pred cEEEEeecCCc-cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 124 DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 124 ~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
..+++ .++.. ... ..++.+++.+.....+.........+.++++.++. ..+..+..||+||+||+++|+|++.+
T Consensus 84 ~i~~v-~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 84 KIGII-FQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred ceEEE-EeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 34554 33321 111 25788887654433222221122345566666554 35678899999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+|||+++||+..+..+.+++.+
T Consensus 161 p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 161 PEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 131
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=7.3e-28 Score=214.18 Aligned_cols=144 Identities=11% Similarity=0.115 Sum_probs=108.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------------CCcEEEEeecCCccccCccCC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------------PPDVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------------~~~~g~~i~~~~~~~~~~~l~ 142 (229)
+.+++|++++|+||||||||||+|+|+|++ +|++|++ +++... ....++++ ++.... ..++
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~---~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~-q~~~l~--~~~t 91 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLT---RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF-QEARLF--PHLS 91 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECccCccccccchhhCCeEEEe-cCCccC--CCCc
Confidence 348999999999999999999999999999 8999995 333221 12356644 333222 2268
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+.+++.+..... ........+.++++.++.. .+.++.+||||||||+++|+|++.+|+++|+||||++||+..+.+
T Consensus 92 v~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~ 169 (354)
T TIGR02142 92 VRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169 (354)
T ss_pred HHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 888877643321 1112233456677766553 477889999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++.+
T Consensus 170 l~~~L~~ 176 (354)
T TIGR02142 170 ILPYLER 176 (354)
T ss_pred HHHHHHH
Confidence 9988865
No 132
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.4e-28 Score=199.71 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=110.2
Q ss_pred hhhhhcCCc-----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEE
Q 026996 67 VLCSQRREI-----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATV 128 (229)
Q Consensus 67 ~l~~~~~~~-----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~ 128 (229)
+|+|.|+++ +.+++ ++++|+|+||||||||+++|+|++ .|++|++. .+... ....+++
T Consensus 5 ~l~~~~~~~~~~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTLKIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE---KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeeeCceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 345555554 34889 999999999999999999999999 89999953 33221 1235553
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
.++.... ..+++.+++.+..... ........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+
T Consensus 81 -~q~~~~~--~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 81 -FQQYALF--PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred -ecCCccC--CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333221 1257777766543211 1112233456677766543 4678889999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||...++.+.+++.+
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 133
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.95 E-value=7.2e-28 Score=206.45 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=105.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------CcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~--------~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.|++|++++|+||||||||||+++|+|++ .|++|++. ++.... ...+++ .++........+++.+++
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v-~q~~~~~~~~~~tv~~~l 110 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMI---EPTSGELLIDDHPLHFGDYSYRSQRIRMI-FQDPSTSLNPRQRISQIL 110 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCCEEEECCEECCCCchhhHhccEEEE-ecCchhhcCcchhHHHHH
Confidence 38899999999999999999999999999 89999953 332221 235553 333221111224555555
Q ss_pred HHHHHhc-CCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 148 KEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 148 ~~~~~~~-g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
....... ........+.+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 111 DFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 4433221 222112233456677766652 356778999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 026996 224 MFDE 227 (229)
Q Consensus 224 ll~~ 227 (229)
++.+
T Consensus 191 ~l~~ 194 (267)
T PRK15112 191 LMLE 194 (267)
T ss_pred HHHH
Confidence 8765
No 134
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=9.9e-28 Score=200.15 Aligned_cols=141 Identities=21% Similarity=0.200 Sum_probs=106.8
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC----CCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
.+++|++++|+|+||||||||+++|+|++ .|++|++.. +... ....+++.+....+ ..+++.+++....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~---~~~t~~~~~~~~~ 95 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLY---ENLTARENLKVHT 95 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEeccccccccEEEEcCCCCcc---ccCCHHHHHHHHH
Confidence 38899999999999999999999999999 899999543 3222 12345533322221 1257788876544
Q ss_pred HhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 152 ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
...+. ....+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||...++++.+++.+
T Consensus 96 ~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 169 (223)
T TIGR03740 96 TLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRS 169 (223)
T ss_pred HHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHH
Confidence 33221 234566677766553 4677889999999999999999999999999999999999999999998864
No 135
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.6e-28 Score=204.54 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=113.5
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~-------- 121 (229)
+++++++++|++. +.|++|++++|+|+||||||||+++|+|++ +| ++|++. ++..+
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~---~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH---EVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CcccCCCcceEEEECCEeccccccChH
Confidence 5566777777654 238899999999999999999999999998 64 799954 33221
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++.... ..+++.+++.+.....+. ......+.+.++++.++. ..+.++..||+||+||++
T Consensus 82 ~~~~~i~~~~-q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 82 AVRRTIGMVF-QRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred HHhcceEEEc-cccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 12355543 332221 225788887654433222 111112334555555543 345778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 136
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=4.3e-28 Score=192.70 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=119.8
Q ss_pred cchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCC-C---CCc-----
Q 026996 61 NKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-K---PPD----- 124 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~-~---~~~----- 124 (229)
..++++++-|+||...+ -.+|++|.|||.+|||||||||||+=+. +|+.|.+..++. + +..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE---~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE---KPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc---CCCCceEEECCeEEEeeeCCCCCee
Confidence 45788999999999865 4589999999999999999999999888 999999654432 2 111
Q ss_pred -------------EEEEeecCCccccCccCChhhhHHH-HHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCcccc
Q 026996 125 -------------VATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 188 (229)
Q Consensus 125 -------------~g~~i~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k 188 (229)
.|.+++ .|+.+. .+++.+|... .....|.+.....+....++..++.. .+.++..|||||+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ--~FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQ--HFNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred eCCHHHHHHHHHHhhHhhh--hcchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 222221 222222 2566666433 23445666666667777777776653 4678889999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
||++|||||++.|+++++||||+.|||+..-++...+.
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~ 196 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988777766654
No 137
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.1e-28 Score=208.71 Aligned_cols=160 Identities=17% Similarity=0.135 Sum_probs=116.9
Q ss_pred hhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCc
Q 026996 63 TSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPD 124 (229)
Q Consensus 63 ~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~ 124 (229)
++++++++.|++ + +.|++||+++|+|+||||||||+++|+|++ +|++|++ +++... ...
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~---~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL---LPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECCcCcHHHHhhh
Confidence 556667777753 2 338999999999999999999999999999 9999995 444322 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
++++.+....... ..++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++++.+|+
T Consensus 83 i~~~~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 83 VGMVFQNPDNQFV--GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred eEEEEeCHHHhcc--cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 5664433211111 14788887665443333222223345666665444 3567888999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+|||+++||+..+..+.+++.+
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 138
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.9e-28 Score=205.02 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=114.4
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCccc-cCCCCC-------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASS-FDSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~-~~~~~~------- 121 (229)
.++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ . |++|++ +++...
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY---ELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc---ccCCCCCcceEEEECCEEccccccch
Confidence 35677777777654 238899999999999999999999999998 5 589985 333221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhc-CCCCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
...++++. ++... .. .++.+++.+..... +.........+.++++.++. ..+.++.+||+||+||+
T Consensus 90 ~~~~~~i~~~~-q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 90 ALLRAKVGMVF-QKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred HHHhcceEEEe-cCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 12355543 33322 11 47777776543322 22211122345556665543 24677889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988865
No 139
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.3e-27 Score=195.81 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=104.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC----CcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP----PDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
.+++|++++|+|+||||||||+++|+|++ .|++|++.. +..+. ...++ +.+..... ...++.+++.+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~-~~~~~~~~--~~~tv~~~l~~~~ 95 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM---QPSSGNIYYKNCNINNIAKPYCTY-IGHNLGLK--LEMTVFENLKFWS 95 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCcccChhhhhhEEe-ccCCcCCC--ccCCHHHHHHHHH
Confidence 38899999999999999999999999999 899999643 33221 12344 23222111 2257788876543
Q ss_pred HhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 152 ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
...+ ....+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 96 ~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 96 EIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred Hhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 3221 22344555565443 35677889999999999999999999999999999999999999999988853
No 140
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.5e-28 Score=213.28 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=112.0
Q ss_pred hhhhhcCCc-----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------------CCcEEEE
Q 026996 67 VLCSQRREI-----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------------PPDVATV 128 (229)
Q Consensus 67 ~l~~~~~~~-----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------------~~~~g~~ 128 (229)
+|+|.|++. +.+++|++++|+||||||||||+|+|+|++ +|++|++. .+..+ ....+++
T Consensus 5 ~l~k~~~~~~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~---~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLT---RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccccccccchhhCCEEEE
Confidence 345555543 348999999999999999999999999999 89999953 33211 2245664
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
+ ++.... +.+++.+++.+... ......+.++++.++.. .+.++..|||||+||+++|++++.+|+++|+
T Consensus 82 ~-q~~~l~--~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLL 152 (352)
T PRK11144 82 F-QDARLF--PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred c-CCcccC--CCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4 333222 22688888765322 11234566777766653 4678899999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||+..+..+.+++.+
T Consensus 153 DEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 153 DEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 141
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=1.1e-27 Score=203.59 Aligned_cols=161 Identities=15% Similarity=0.083 Sum_probs=112.2
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCC-----CC-------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQV-----KP------- 122 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~-----~~------- 122 (229)
+++++++++|++. +.|++|++++|+|+||||||||+++|+|++ .|++|++.. +.. ..
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEEecccccccccccCCHHHH
Confidence 4556666666543 348999999999999999999999999999 899999643 322 10
Q ss_pred -----CcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhh
Q 026996 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 123 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~ 193 (229)
..++++. ++........++..+++......... ........+.++++.++.. .+..+..||+||+||+++
T Consensus 81 ~~~~~~~i~~~~-q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 81 RRLMRTEWGFVH-QNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHhhhcceEEEE-eCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 1245543 33321111223455555432211111 1111234556677766652 356788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+|||+++||+..++.+.+++.+
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888764
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=8.4e-28 Score=204.17 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=111.5
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------------
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------------- 121 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------------- 121 (229)
+++|++.|++. +.|++|++++|+|+||||||||+|+|+|++ .|++|++. .+..+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE---PIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccccccccccccch
Confidence 34455555443 348999999999999999999999999999 89999953 33221
Q ss_pred ------CCcEEEEeecCCccccCccCChhhhHHHHHH-hcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhh
Q 026996 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++.... ...++.+++.+... ..+.........+.+.++.++. ..+..+..||+||+||++
T Consensus 80 ~~~~~~~~~i~~v~-q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVF-QSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEe-cCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence 12355543 332221 22577787765322 1222211122345566666554 345678899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888764
No 143
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=2e-27 Score=199.51 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=106.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---CCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
+.|++|++++|+|+||||||||+|+|+|++ +|++|++. ++... ....+++ .++..... .+++.+++.+..
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~v-~q~~~l~~--~~tv~e~l~~~~ 79 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA---QPTSGGVILEGKQITEPGPDRMVV-FQNYSLLP--WLTVRENIALAV 79 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCCCChhheEE-ecCcccCC--CCCHHHHHHHHH
Confidence 458999999999999999999999999999 89999964 33322 1223543 33332211 257888876543
Q ss_pred Hh--cCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 152 AR--RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~--~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.. .+.........+.+.++.++. ..+.++..|||||+||+++|++++.+|+++|+|||+++||+..+.++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 21 111111122335566665554 34678889999999999999999999999999999999999999999998864
No 144
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.6e-28 Score=204.50 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=113.8
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~g 126 (229)
+++++++++|++. +.+++|++++|+|+||||||||+++|+|++ .|++|++. .+... ....+
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 4456666777654 238899999999999999999999999999 89999954 33221 12355
Q ss_pred EEeecCCccccCccCChhhhHHHHHH----hcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~----~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
++. ++.... ..+++.+++.+... ..+.........+.++++.++. ..+.++..||+||+||+++|+|++.+
T Consensus 80 ~~~-q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 80 LLP-QHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred Eec-ccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence 543 333222 22577777654311 1111111223345566665554 34788899999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+|||+++||+..++.+.+++.+
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 145
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.95 E-value=1.8e-27 Score=199.57 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=107.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCcccc-CCCCC------CCcEEEEeecCCccccCccCChh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSF-DSQVK------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p----~~G~~~-~~~~~------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
+.+++|++++|+||||||||||+|+|+|++ +| ++|++. .+... ....+++ .++........+++.
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~-~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLL---PPGLTQTSGEILLDGRPLLPLSIRGRHIATI-MQNPRTAFNPLFTMG 82 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCccCccccEEEECCEechhhhhhhheeEEE-ecCchhhcCcccCHH
Confidence 458999999999999999999999999999 88 899964 33322 1235553 344321111224666
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhhc-----CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
+++.......+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 6655433333322222234466777776654 46778899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
.+.+++.+
T Consensus 163 ~l~~~l~~ 170 (230)
T TIGR02770 163 RVLKLLRE 170 (230)
T ss_pred HHHHHHHH
Confidence 99888764
No 146
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=203.10 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=112.8
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~-------- 121 (229)
++++++++.|++. +.|.+||+++|+|+||||||||+++|+|++ +| ++|++. ++..+
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL---ELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CcccCCCCceEEEECCEEccccccChH
Confidence 4556666666544 238899999999999999999999999998 66 599953 33222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC--CCccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
....+++. ++.... ..+++.+++.+.....+.. .......+.++++.++. ..+.++..||+||+||+
T Consensus 82 ~~~~~i~~~~-q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 82 EVRREVGMVF-QYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred HHhhceeEEe-cCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 12345543 333221 2257888876543322221 11112334555665543 24567889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+|||+++||...+..+.+++..
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 147
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.5e-28 Score=204.00 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=114.3
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.++++++++.|++.. .+++|++++|+|+||||||||+++|+|++ +|++|++. .+..+. ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY---KPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc---CCCcceEEECCEECCCCCHHHHHhcC
Confidence 366777777776542 37899999999999999999999999999 89999954 332221 12
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhc-------CCC------CC--ccHHHHHHHHHhhhh--cCCCCCCCCCccc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP------WT--FNPLLLLNCLKNLRN--QGSVYAPSFDHGV 187 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-------g~~------~~--~~~~~~~~~l~~l~~--~~~~~~~~lSgG~ 187 (229)
.+++ .++.... ..+++.+++.+..... +.. .. .....+.+.++.++. ..+.++..||+||
T Consensus 82 i~~~-~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 82 VVRT-FQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQ 158 (255)
T ss_pred eEEe-ccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHH
Confidence 3333 3333221 2257888876542210 110 00 111234555665544 3478888999999
Q ss_pred cchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||+++|++++.+|+++|+||||++||+..+..+.+++..
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 148
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=205.89 Aligned_cols=161 Identities=12% Similarity=0.019 Sum_probs=117.9
Q ss_pred cccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCccccC-CCCC----
Q 026996 59 VQNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFD-SQVK---- 121 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~~~-~~~~---- 121 (229)
+...++++++++.|++.. .|.+|++++|+|+||||||||+++|+|++ . |++|++.. +..+
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN---DLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CcccCCCCceEEEECCEEccccc
Confidence 445677888888887642 38899999999999999999999999998 5 68999533 3221
Q ss_pred ------CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh------cCCCCCCCCCccccc
Q 026996 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 189 (229)
Q Consensus 122 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~ 189 (229)
....+++ .++..... .++.+++.+.....+... .....+.++++.++. ..+.++..||+||+|
T Consensus 113 ~~~~~~~~~i~~v-~q~~~l~~---~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 113 VDPVALRRRIGMV-FQKPNPFP---KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred cchHhhhccEEEE-ecCCccCc---CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 1234554 34432211 267787765544333221 123345566665543 246778899999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|++++.+|+++|+|||+++||...+..+.+++..
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~ 225 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE 225 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988865
No 149
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=204.34 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=116.5
Q ss_pred cchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC------
Q 026996 61 NKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK------ 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~------ 121 (229)
..++++++++.|++.. .|++|++++|+|+||||||||+|+|+|++ .| ++|++. ++..+
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN---DTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---ccccCCCCceEEEECCEECcccccc
Confidence 3577888999887652 38899999999999999999999999998 54 899953 33222
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC--CCccHHHHHHHHHhhhhc------CCCCCCCCCccccc
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 189 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~ 189 (229)
...++++. ++... .. .++.+++.+.....+.. .......+.++++.++.. .+.++..||+||+|
T Consensus 95 ~~~~~~~i~~v~-q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 95 VVELRARVGMVF-QKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred hHHHhhceEEEe-cCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 12345543 33222 21 36778776544332321 111123445666665542 35678899999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|++++.+|+++|+|||+++||+..+..+.+++..
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998865
No 150
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.4e-28 Score=207.10 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=114.9
Q ss_pred hhhhhhhhhcCC------c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------
Q 026996 63 TSLKVLCSQRRE------I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~------~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------- 121 (229)
+++++++++|++ + +.|++|++++|+|+||||||||+++|+|++ .|++|++. ++..+
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL---IPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEeccccccHH
Confidence 455666666642 1 338999999999999999999999999999 89999953 33222
Q ss_pred --CCcEEEEeecCCc-cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhh
Q 026996 122 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 122 --~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~a 196 (229)
....+++ .++.. .... .++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|++
T Consensus 82 ~~~~~i~~v-~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMV-FQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEE-ecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 1235554 33321 1121 3566666554433333222223445666665554 3467889999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 151
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.3e-28 Score=202.71 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=111.0
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCcE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~~ 125 (229)
++++++++.|++. +.|++||+++|+|+||||||||+++|+|++ +|++|++. .+... ....
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP---RATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5566677777654 238999999999999999999999999999 89999953 33222 1234
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---hhcCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+++. ++.... ..+++.+++....... ........+.++++.+ ....+.++..||+||+||+++|++++.+|+
T Consensus 83 ~~~~-q~~~~~--~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 83 AIVP-EGRRVF--SRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EEec-cCcccC--CCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 5533 332221 1257777765532111 1111122333444433 233456788999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||...+..+.+++.+
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=206.26 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=114.2
Q ss_pred hhhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC----------CCc
Q 026996 64 SLKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----------PPD 124 (229)
Q Consensus 64 ~~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~----------~~~ 124 (229)
++++++++|++ . +.|.+||+++|+|+||||||||+|+|+|++ .|++|++ +.+... ...
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 3 ETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL---KPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEECccccchHHHHHhh
Confidence 34556666642 2 348999999999999999999999999999 8999995 333222 123
Q ss_pred EEEEeecCCc-cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 125 VATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 125 ~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
++++ .++.. .... .++.+++.+.....+.........+.++++.++. ..+.++.+||+||+||+++|++++.+|
T Consensus 80 i~~v-~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 80 VGIV-FQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred eEEE-eeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5554 44421 1121 4778887654333232222223445666776554 356788999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++||+..+.++.+++.+
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~ 182 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYD 182 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 153
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.6e-28 Score=205.73 Aligned_cols=160 Identities=17% Similarity=0.080 Sum_probs=114.7
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------CCcE
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------PPDV 125 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~~~~ 125 (229)
.++++++++.|++. +.+++|++++|+|+||||||||+++|+|++ +|++|++.. +... ....
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ---PPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCEehhhCCHHHHhhhe
Confidence 46677777777654 238899999999999999999999999999 899999643 3222 1235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHh-cC---CCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhc
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g---~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
+++.+...+. ..+++.+++.+.... .. .........+.++++.++. ..+.++..|||||+||+++|++++.
T Consensus 88 ~~v~q~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 88 AYLPQQLPAA---EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred EEeccCCCCC---CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 5543322222 125777776542211 01 0111122345566665554 3467888999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||...+..+.+++.+
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999888864
No 154
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5.1e-27 Score=185.12 Aligned_cols=161 Identities=19% Similarity=0.118 Sum_probs=125.3
Q ss_pred chhhhhhhhhcCCc-----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------
Q 026996 62 KTSLKVLCSQRREI-----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------- 121 (229)
+++++++.|..++- ..|++||.++||||+|||||||+-+++|+. .|++|++ +.+...
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd---~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD---DPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC---CCCCceEEEcCcchhhcCHHHH
Confidence 44555555554433 348999999999999999999999999999 9999995 444433
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC--CCCCCCCCccccchhhhhh
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~k~Rl~~a~ 195 (229)
...+|.+++-.... +.++..||+.......|-............++.++... .-++.+|||||+|||++||
T Consensus 83 A~~R~~~vGfVFQSF~Li---p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 83 AALRARHVGFVFQSFHLI---PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHhhccceeEEEEeeecc---ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 24567755433222 23788899888777777544444556778888777654 5678899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
|++..|+||+.||||-.||...-+++.+++..+
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l 192 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFAL 192 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 155
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=204.77 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=114.5
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCcccc-CCCCC-------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSF-DSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~~-~~~~~------- 121 (229)
.+++++++++|++. +.|++|++++|+|+||||||||+++|+|++ . |++|++. .+..+
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN---DLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEcccccCCH
Confidence 46777888888764 238899999999999999999999999998 5 6899954 33221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++... +. .++.+++.+.....+.. ....+.+.++++.++. ..+.++..||+||+||++
T Consensus 90 ~~~~~~i~~v~-q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 90 VEVRRRIGMVF-QQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred HHHhhceEEEc-cCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence 12355543 33322 21 37777776544332221 1112334455555432 246778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 156
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=202.32 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=114.8
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC-------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~------- 121 (229)
.++++++++.|++. +.|++||+++|+|+||||||||+|+|+|++ .| ++|++. .+..+
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN---DLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc---cCCcCCCCceEEEECCEecccccccH
Confidence 46677777777654 238899999999999999999999999998 66 589853 33221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
...++++. ++.... . .++.+++.+.....+... ......+.+.++.++. ..+.++..|||||+||+
T Consensus 84 ~~~~~~i~~v~-q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 84 LELRRKIGMVF-QTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HHHhhceEEEe-eccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH
Confidence 12355543 333222 1 588888766543332211 1112334555554432 34678889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+||||++||+..+..+.+++..
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 157
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=202.92 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=114.9
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCccccC-CCCC-------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFD-SQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~~-~~~~------- 121 (229)
.++++++++.|++.. .|.+|+++||+|+||||||||+++|+|++ .| ++|++.. +..+
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN---DLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CcccCCCcceEEEECCEEcccccchH
Confidence 466777777776542 38899999999999999999999999998 54 7999543 3221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++... . . .++.+++.+.....+.........+.++++.++. ..+.++..||+||+||++
T Consensus 89 ~~~~~~i~~v~-q~~~~-~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 89 VELRKNVGMVF-QKPNP-F-P-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHhhhEEEEe-cCCcc-C-c-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 12355543 33222 2 1 5788887755433332211112234556665543 246778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 199 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 158
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-27 Score=201.88 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=111.6
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~g 126 (229)
++++++++.|++. +.|.+|++++|+|+||||||||+++|+|++ .|++|++. ++..+ ....+
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI---DPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4455666666543 238899999999999999999999999999 89999954 33221 12345
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
+ +.++..... .++.+++.+.....+ .....+.++++.++.. .+.++..||+||+||+++|++++.+|++
T Consensus 81 ~-~~q~~~~~~---~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 81 M-VFQQPHLFE---GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred E-EecCchhch---hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 5 344433221 366666543222111 1234456667766553 3677889999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|||+++||...++.+.+++..
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 159
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-27 Score=209.71 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=114.3
Q ss_pred hhhhhhhhhcC----Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCcccc-CCCCCC-------
Q 026996 63 TSLKVLCSQRR----EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSF-DSQVKP------- 122 (229)
Q Consensus 63 ~~~~~l~~~~~----~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~-~~p~~G~~~-~~~~~~------- 122 (229)
+++++|++.|. .. +.|.+||++||+|+||||||||+++|+|++.. ..|++|++. ++..+.
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 45556666662 22 34899999999999999999999999999820 015889854 443221
Q ss_pred -----CcEEEEeecCCccccCccCChhhhHHHHHHhc---CC--CC-CccHHHHHHHHHhhhhc-----CCCCCCCCCcc
Q 026996 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 186 (229)
Q Consensus 123 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---g~--~~-~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG 186 (229)
..++++ .++......+.+++.+++....... +. .. ......+.++++.++.. .+.++.+||||
T Consensus 84 ~~~~~~~i~~v-~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 84 RKLVGHNVSMI-FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHhCCCEEEE-ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 235664 4454322233356666655322211 10 01 11234567778877664 25778899999
Q ss_pred ccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+||+++|+||+.+|++||+||||++||...+.++.+++.+
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 203 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTR 203 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 160
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-27 Score=206.50 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=115.7
Q ss_pred hhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---ccc-cCCCCC--------
Q 026996 63 TSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASS-FDSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~---G~~-~~~~~~-------- 121 (229)
++++++++.|++ . +.|.+|+++||+|+||||||||+++|+|++ .|++ |++ +.+..+
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~---~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL---LPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc---CCCCCCCcEEEECCEECCcCCHHHH
Confidence 456666666643 1 248999999999999999999999999999 8988 775 344322
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhc
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
...+|++.+....... ..++.+++.+.....+.......+.+.++++.++. ..+.++..||+||+||+++|+|++.
T Consensus 83 ~~~ig~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDNQFV--GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHHhhc--cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 1235664333221112 15788887654433333222222345666766554 3477889999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+|||+++||...+..+.+++..
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 161
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=1.5e-27 Score=203.09 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=112.9
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------CCcEEE
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------PPDVAT 127 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~~~~g~ 127 (229)
+++++++.|++. +.+++||+++|+|+||||||||+++|+|++ +|++|++.. +... ....++
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL---RPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 345556666544 338899999999999999999999999999 899999543 3222 123455
Q ss_pred EeecCCccccCccCChhhhHHHHHH-h---cCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
+ .++.... ...++.+++.+... . .+.........+.++++.++. ..+.++..||+||+||+++|++++.+|
T Consensus 80 ~-~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 80 V-EQDSDTA--VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred e-cccCccC--CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3 3333211 12577887765321 1 111111223345666666554 346788899999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+|||+++||...+..+.+++.+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.3e-27 Score=199.24 Aligned_cols=145 Identities=18% Similarity=0.123 Sum_probs=107.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEEEeecCCccccCccCChhhhHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 149 (229)
.+++|++++|+|+||||||||+++|+|++ +|+.|++ +++... ....+++ .++..... .+++.+++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~---~~~~G~i~~~g~~~~~~~~~~~~i~~~-~q~~~~~~--~~t~~~nl~~ 95 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFE---TPTSGEILLDGKDITNLPPHKRPVNTV-FQNYALFP--HLTVFENIAF 95 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcCcCChhhcceEEE-ecccccCC--CCcHHHHHHH
Confidence 38899999999999999999999999999 8999995 333222 2245553 34433222 2577777765
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 150 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.....+.........+..+++.++.. .+..+..||+||+||+++|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 96 GLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKR 175 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 44333322112233455666655543 4667789999999999999999999999999999999999999999988864
No 163
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.94 E-value=2.3e-27 Score=201.72 Aligned_cols=152 Identities=16% Similarity=0.068 Sum_probs=109.7
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCcc
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 135 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~ 135 (229)
++++++++.|++. +.|++|++++|+|+||||||||+|+|+|++ +|++|++..+. ....+++. ++...
T Consensus 5 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~~--~~~i~~v~-q~~~~ 78 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV---APDEGVIKRNG--KLRIGYVP-QKLYL 78 (251)
T ss_pred EEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECC--ccCEEEec-ccccc
Confidence 5566777777654 238899999999999999999999999999 89999975543 23466643 33321
Q ss_pred ccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 136 LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
...-..+..++.. . ........+.++++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++|
T Consensus 79 ~~~l~~~~~~~~~----~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 79 DTTLPLTVNRFLR----L---RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred ccccChhHHHHHh----c---cccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 1110012222211 1 111223445666666554 346788899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|+..+..+.+++.+
T Consensus 152 D~~~~~~l~~~L~~ 165 (251)
T PRK09544 152 DVNGQVALYDLIDQ 165 (251)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888754
No 164
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.94 E-value=3.6e-27 Score=200.63 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=112.3
Q ss_pred hhhhhhhhhcCCc------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCcccc-CCCCC------CCcE
Q 026996 63 TSLKVLCSQRREI------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSF-DSQVK------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~~~------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p----~~G~~~-~~~~~------~~~~ 125 (229)
++++++++.|+.. +.+++||+++|+|+||||||||+++|+|++ +| ++|++. .+..+ ...+
T Consensus 5 l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 5 IELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL---PAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCCcCCEEEECCeeccccccccceE
Confidence 4556666666221 348999999999999999999999999999 78 999954 33322 1235
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc-----CCCCCCCCCccccchhhhhhhhhcC
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
+++ .++.........++.++........+.. .....+.+.++.++.. .+.++..||+||+||+++|++++.+
T Consensus 82 ~~v-~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 82 ATI-MQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred EEE-ecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 554 3443211112235555544332223321 2234566777776654 3677889999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+|||+++||...+..+.+++..
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999888764
No 165
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=9.3e-28 Score=222.39 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=117.2
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~ 124 (229)
.++++++++.|++.. .|.+|+++||+||||||||||+|+|+|++ +|++|++. .+..+ ...
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY---TRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHHHhCC
Confidence 356777888887642 38899999999999999999999999999 89999964 43222 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhc---CC-CCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---g~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
.+++. ++.... ..+++.+++.+..... +. ........+.++++.++.. .+.++.+|||||+||+++|+|++
T Consensus 81 i~~v~-q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 81 IGIIH-QELNLI--PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred EEEEE-cchhcc--CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 56644 333211 2267888776532211 10 1111123456677766653 46778899999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|+++|+||||++||+..+.++.+++.+
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999888765
No 166
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=200.27 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=112.6
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--C---CCccc-cCCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--P---QKASS-FDSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p---~~G~~-~~~~~~-------- 121 (229)
++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ + | ++|++ +.+..+
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH---DLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---cCCCCCCCceEEEECCEEcccccCChH
Confidence 5666777777654 238999999999999999999999999997 5 3 68985 333222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhhc------CCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~ 192 (229)
...++++ .++..... ..++.+++.......+... ......+.+.++.++.. .+..+..||+||+||++
T Consensus 82 ~~~~~i~~~-~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 158 (252)
T PRK14256 82 SIRRRVGMV-FQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC 158 (252)
T ss_pred HhhccEEEE-ecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence 1235554 34432222 2577787765433322211 11223445556555532 34678899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 159 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 193 (252)
T PRK14256 159 IARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193 (252)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-27 Score=204.19 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=113.4
Q ss_pred hhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 63 TSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 63 ~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
++++++++.|++. +.|++|++++|+||||||||||+++|+|++ +|++|++. .+... ...
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE---KVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCcCCHHHHHhh
Confidence 4566666666531 238999999999999999999999999999 89999954 33222 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
.+++.+....... ..++.+++.+.....+.........+.++++.++. ..+.++..||+||+||+++|+|++.+|+
T Consensus 85 i~~v~q~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQFV--GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHhcc--cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4554333221111 13555665544333332222222345566666654 3467788999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+..+.+++.+
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 168
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.94 E-value=1.6e-27 Score=198.53 Aligned_cols=146 Identities=19% Similarity=0.116 Sum_probs=107.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCCh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDA 143 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~ 143 (229)
+.+++|++++|+|+||||||||+++|+|++ +|++|++. ++... ....+++. ++..... ..++
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~-q~~~~~~--~~t~ 99 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLR---SVQEGSLKVLGQELYGASEKELVQLRRNIGYIF-QAHNLLG--FLTA 99 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEc-CChhhcC--CCCH
Confidence 348999999999999999999999999999 89999953 33322 12355533 3322211 2578
Q ss_pred hhhHHHHHHhcC-CCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 144 MEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 144 ~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
.+++.+...... .........+.++++.++.. .+..+..||+||+||+++|++++.+|+++|+|||+++||+..+..
T Consensus 100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~ 179 (220)
T TIGR02982 100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179 (220)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 788776543322 11111223456667766543 467788999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++.+
T Consensus 180 l~~~l~~ 186 (220)
T TIGR02982 180 VVELMQK 186 (220)
T ss_pred HHHHHHH
Confidence 9888864
No 169
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.2e-27 Score=202.40 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=114.3
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCcccc-CCCCC--------
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSF-DSQVK-------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~~-~~~~~-------- 121 (229)
...+++++++++|++.. .|++|++++|+|+||||||||+++|+|++.... |++|++. .+..+
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 34578888888887653 378999999999999999999999999861001 6899953 33221
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++..... .++.+++.......+... ......+.+.++.++. ..+.++..||+||+||++
T Consensus 99 ~~~~~i~~v~-q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 99 NLRREIGMVF-QKPNPFP---KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred HHhccEEEEe-cCCccCc---ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 12355543 3332221 267777665432222111 1112234445554433 235778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||...+..+.+++..
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 170
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.5e-27 Score=198.58 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=107.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
+.|.+|++++|+|+||||||||+++|+|++ +|++|++ +.+... ....+++.+ +.... ..+++.+++.
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~---~p~~G~v~i~g~~~~~~~~~~~~i~~~~q-~~~~~--~~~t~~e~l~ 93 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFI---KPDSGKILLNGKDITNLPPEKRDISYVPQ-NYALF--PHMTVYKNIA 93 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEcCcCChhHcCEEEEee-cCccC--CCccHHHHHH
Confidence 448999999999999999999999999999 9999995 333222 124565443 33222 2257788876
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.....+.........+.+.++.++.. .+.++..||+||+||+++|++++.+|+++++|||+++||...++.+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 173 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 544333322212223445666655543 467788999999999999999999999999999999999999999988875
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 174 ~ 174 (235)
T cd03299 174 K 174 (235)
T ss_pred H
Confidence 4
No 171
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-27 Score=220.86 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=117.6
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcccc-CCCCC---------C
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSF-DSQVK---------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p--~~G~~~-~~~~~---------~ 122 (229)
.++++++++.|++.. .|++|++++|+||||||||||+|+|+|++ .| ++|++. .+..+ .
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY---PHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCCCeEEEECCEECCCCCHHHHHH
Confidence 366777888887642 38899999999999999999999999998 65 899964 33222 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhc--C-CCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--g-~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al 197 (229)
...+++.+....+ ..+++.+++.+..... + .........+.++++.++.. .+.++.+||||||||+++|+++
T Consensus 82 ~~i~~v~q~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 82 AGIAIIHQELALV---KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred CCeEEEEeccccC---CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 2366654432221 2267888776543221 1 11111223456677776653 4678889999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+++|+||||++||+..+.++.+++.+
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 172
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=3.2e-27 Score=199.06 Aligned_cols=145 Identities=20% Similarity=0.213 Sum_probs=107.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------CCcEEEEeecCCccccCccCChhhhHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 149 (229)
.+.+|++++|+|+||||||||+++|+|++ .|++|++ +++... ....+++ .++.... ...+..+++.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~i~g~~~~~~~~~~~~i~~~-~q~~~~~--~~~t~~enl~~ 95 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLE---QPDSGRIRLNGQDATRVHARDRKIGFV-FQHYALF--KHLTVRDNIAF 95 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcCcCChhhcCEEEE-ecChhhc--cCCcHHHHHHh
Confidence 38899999999999999999999999999 8999995 333222 1234553 3333221 12577787765
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 150 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.....+.........+.++++.++. ..+..+..||+||+||+++|++++.+|+++|+|||+++||...++.+.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 96 GLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRK 175 (237)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 4433232222223345566666554 34677889999999999999999999999999999999999999999998865
No 173
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=2.3e-27 Score=220.61 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=113.7
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC-------------------
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS------------------- 118 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~------------------- 118 (229)
++++++.|++. +.+.+|++++|+||||||||||+|+|+|++. ..|++|++...
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ-YEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc-CCCCceEEEEeccccccccccccccccccc
Confidence 45566666553 2388999999999999999999999999850 04899995331
Q ss_pred -----CCC------------------CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc
Q 026996 119 -----QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 119 -----~~~------------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~ 175 (229)
..+ ....++++ ++..... ..+++.+++.+.....+.........+.++++.++..
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIML-QRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEe-ccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 100 11245543 3311111 1257788876654444433222234566777776653
Q ss_pred --CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 176 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 176 --~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+.++.+||||||||+++|+|++.+|++||+||||++||+..+..+.+++.+
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999887764
No 174
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.9e-27 Score=200.27 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=114.7
Q ss_pred cchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--C---CCccc-cCCCCC------
Q 026996 61 NKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--P---QKASS-FDSQVK------ 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p---~~G~~-~~~~~~------ 121 (229)
..++++++++.|++.. .|++||+++|+|+||||||||+++|+|++ . | ++|++ +++..+
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI---QMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---cCCCCCCCceEEEECCEEccccccC
Confidence 3567888888887642 38899999999999999999999999998 5 3 58985 333222
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccch
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~R 190 (229)
....+++ .++..... .++.+++.+.....+... ......+.++++.++. ..+.++..||+||+||
T Consensus 88 ~~~~~~~i~~v-~q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 88 LVELRKNIGMV-FQKGNPFP---QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHHhhceEEE-ecCCcccc---cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 1235554 34432222 277777765433333211 1112234455665543 2356788999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|++++.+|+++|+||||++||...+..+.+++.+
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 200 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 175
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.7e-27 Score=201.40 Aligned_cols=160 Identities=17% Similarity=0.068 Sum_probs=116.5
Q ss_pred cchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCccc-cCCCCC------
Q 026996 61 NKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASS-FDSQVK------ 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~-~~~~~~------ 121 (229)
..+++++++++|++.. .+.+||++||+|+||||||||+++|+|++ . |++|++ +++..+
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN---DTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CccCCCCcceEEEECCEEcccccCC
Confidence 3577888888887653 38899999999999999999999999998 5 589995 333222
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccch
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~R 190 (229)
...++++. ++..... .++.+++.+.....+.... .....+.++++.++. ..+.++..||+||+||
T Consensus 96 ~~~~~~~i~~v~-q~~~~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 96 VYEMRKHIGMVF-QRPNPFA---KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred hHHHhcceEEEe-cCCcccc---ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 12355543 4332222 3788887664433332111 112334555555543 2467788999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|++++.+|+++|+|||+++||+..+.++.+++..
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988865
No 176
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.6e-27 Score=199.05 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=114.1
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~g 126 (229)
++++++++.|++. +.+++|++++|+|+||||||||+++|+|++....|++|++. ++..+ ...++
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 3456666777653 23889999999999999999999999999721136899954 33222 22356
Q ss_pred EEeecCCccccCccCChhhhHHHHHHhcCCCC--CccHHHHHHHHHhhhhc------CCCCCCCCCccccchhhhhhhhh
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
++. ++..... .++.+++.+.....+... ......+.++++.++.. .+.++..||+||+||+++|++++
T Consensus 83 ~~~-q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 83 MVF-QQPNVFV---KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred EEe-cCCcccc---ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 643 4432222 477888765433323211 11223455666765542 35677899999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|+++|+|||+++||+..+..+.+++.+
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988865
No 177
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=3.6e-27 Score=201.40 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=114.2
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cccc-cCCCCCC--------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVKP-------- 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~---~G~~-~~~~~~~-------- 122 (229)
.+++++|++.|++. +.+.+||+++|+|+||||||||+++|+|++ .|+ +|++ +++....
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI---TGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CCCCCCceEEEECCEecccccccchh
Confidence 35666777777654 238899999999999999999999999998 776 4885 3443221
Q ss_pred -----CcEEEEeecCCccccCccCChhhhHHHHHHhc--------CCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccc
Q 026996 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 187 (229)
Q Consensus 123 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--------g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~ 187 (229)
...+++.+...++ ..+++.+++.+..... +.........+.++++.++.. .+.++..||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLV---NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred HHHHHhheEEEccccccc---cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 1245544332222 1257777775432110 111111233456677766553 467888999999
Q ss_pred cchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||+++|++++.+|+++|+|||+++||...++.+.+++..
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 178
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3e-27 Score=203.64 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=114.5
Q ss_pred hhhhhhhhhcCC---------c-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 63 TSLKVLCSQRRE---------I-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 63 ~~~~~l~~~~~~---------~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
+++++++++|++ . +.|.+||+++|+|+||||||||+++|+|++ .|++|++. .+... ..
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF---EEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCCEEEECCEECCcCCHHHHhc
Confidence 445566666642 1 238999999999999999999999999999 89999953 33222 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
.+|++.+....... ..++.+++.+.....+.........+..+++.++. ..+.++..||+||+||+++|++++.+|
T Consensus 82 ~i~~v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 82 KIGMVFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred ceEEEEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 35664443221111 15788887654333332221112334556665443 356778899999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+|||+++||...+..+.+++.+
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 179
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=223.56 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=120.5
Q ss_pred chhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCC----------
Q 026996 62 KTSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---------- 120 (229)
Q Consensus 62 ~~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~---------- 120 (229)
.++++++++.|++ . +.|++||++||+|+||||||||+|+|+|++ .|++|++..++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll---~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL---EQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCeEEEECCEEecccccccc
Confidence 5667777777752 1 238899999999999999999999999999 899998643220
Q ss_pred -C------------CCcEEEEeecCCccccCccCChhhhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc-----CCCCCC
Q 026996 121 -K------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAP 181 (229)
Q Consensus 121 -~------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~-----~~~~~~ 181 (229)
. ...+|++++ +........+++.+++.+..... +.........+.++++.++.. .+.++.
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q-~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQ-EPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEe-CchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 124666544 32111122368888887654432 332222234567778877763 467889
Q ss_pred CCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 182 ~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||||+|||+||+|++.+|++||+||||++||+..+.++.+++.+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV 213 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998865
No 180
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.2e-27 Score=203.17 Aligned_cols=161 Identities=12% Similarity=0.123 Sum_probs=114.6
Q ss_pred cchhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 61 NKTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
..+.+++++++|++. +.+.+|++++|+|+||||||||+++|+|++ .|++|++. ++..+ ...
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM---TPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCcEEEECCEEhhhCCHHHHhhh
Confidence 345667777777654 238899999999999999999999999999 89999954 33222 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHh-cCC---CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g~---~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
++++. ++..... ..++.+++...... .+. ........+.++++.++. ..+.++..||+||+||+++|+|++
T Consensus 83 i~~v~-q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 83 IGLLA-QNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred eEEee-ccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 56543 3332221 24666665532111 010 011122345566665554 357888999999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|+++|+||||++||+..+..+.+++..
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 181
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.4e-27 Score=198.14 Aligned_cols=161 Identities=17% Similarity=0.092 Sum_probs=112.4
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCccc-cCCCCC----------C
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVK----------P 122 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p--~~G~~-~~~~~~----------~ 122 (229)
++++++++.|++. +.|++|++++|+|+||||||||+++|+|+.+...| ++|++ +++..+ .
T Consensus 4 l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 4456666666554 23889999999999999999999999997321144 58995 333322 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~a~ 195 (229)
...+++ .++..... .++.+++.+.....+... ......+.++++.++. ..+.++..||+||+||+++|+
T Consensus 84 ~~i~~v-~q~~~~~~---~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 84 KNVGMV-FQRPNPFP---KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred hheEEE-ecCCccCc---ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 135554 34432222 377787765443333211 1122345566665543 235678899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+||||++||+..+..+.+++.+
T Consensus 160 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 160 AMAVSPSVLLMDEPASALDPISTAKVEELIHE 191 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 182
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=5.9e-27 Score=200.91 Aligned_cols=147 Identities=18% Similarity=0.112 Sum_probs=106.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-----------CCcEEEEeecCCccccCccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-----------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-----------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
.|++|++++|+|+||||||||+++|+|++ .|++|++. ++... ....+++ .++.........++.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v-~q~~~~~~~~~~t~~ 109 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLE---SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMV-FQDSISAVNPRKTVR 109 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEeccccChhHHHHHHhcEEEE-EcChhhccCCCCCHH
Confidence 48999999999999999999999999999 89999953 33222 1235554 344311111224666
Q ss_pred hhHHHHHHh-cCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 145 EDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 145 ~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+++.+.... .+.........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+|||+++||...+..
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 189 (268)
T PRK10419 110 EIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189 (268)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 665433221 1211112233456677766653 367888999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++.+
T Consensus 190 ~~~~l~~ 196 (268)
T PRK10419 190 VIRLLKK 196 (268)
T ss_pred HHHHHHH
Confidence 9888764
No 183
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.6e-27 Score=199.51 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=116.9
Q ss_pred cccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-C------CCCC---
Q 026996 59 VQNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-D------SQVK--- 121 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~------~~~~--- 121 (229)
....++++++++.|++.. .+.+|++++|+|+||||||||+++|+|++ .|++|++. . +...
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~---~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI---EIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCcCceeEcCEEEECCcccccC
Confidence 344567778888887763 38899999999999999999999999999 89997642 1 1111
Q ss_pred -----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhhc------CCCCCCCCCccccc
Q 026996 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 189 (229)
Q Consensus 122 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~ 189 (229)
....+++. ++.... ..+++.+++.+.....+... ......+.++++.++.. .+..+..||+||+|
T Consensus 84 ~~~~~~~~i~~~~-q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 84 DAIKLRKEVGMVF-QQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ 160 (257)
T ss_pred CHHHHhcceEEEc-cCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHH
Confidence 12345543 333222 22577888765533222211 11123345666665542 35677899999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|++++.+|+++|+||||++||...+..+.+++.+
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~ 198 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998865
No 184
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=6.2e-27 Score=206.37 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=116.9
Q ss_pred cchhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cccc-cCCCCCC---
Q 026996 61 NKTSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVKP--- 122 (229)
Q Consensus 61 ~~~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~---~G~~-~~~~~~~--- 122 (229)
..++++++++.|+. . +.|++||++||+|+||||||||+++|+|++ .|+ +|++ +++..+.
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~---~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL---AANGRIGGSATFNGREILNLP 87 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC---CCCCCCCeEEEECCEECCcCC
Confidence 35667777777731 1 348999999999999999999999999999 775 8985 4443321
Q ss_pred ---------CcEEEEeecCCccccCccCChhhhHHHHHHhc-CCCCCccHHHHHHHHHhhhhc-----CCCCCCCCCccc
Q 026996 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGV 187 (229)
Q Consensus 123 ---------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~ 187 (229)
..+++ +.++.+....+.+++.+++....... +.........+.+.++.++.. .+.++.+|||||
T Consensus 88 ~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 88 EKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 24566 44554322333456666655433322 222222234556667766543 245788999999
Q ss_pred cchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||+++|+|++.+|+++|+||||++||...+.++.+++.+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 206 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 185
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7e-27 Score=198.32 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=112.5
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCccc-cCCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASS-FDSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~-~~~~~~-------- 121 (229)
+.++++++.|++. +.|++||+++|+|+||||||||+++|+|++ + |++|++ +.+...
T Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN---DDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc---ccccCCCcceEEEECCEEcccccchHH
Confidence 4556666667654 238899999999999999999999999998 5 479985 333221
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++..... .++.+++.+.....+.... .....+.++++.++. ..+.++..||+||+||++
T Consensus 82 ~~~~~i~~~~-q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 82 ELRKEVGMVF-QQPTPFP---FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred HhhccEEEEe-cCCccCC---CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 12345533 3332221 4788887654433332211 112334555555443 235678899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||+..+..+.+++..
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 186
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.7e-27 Score=198.09 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=113.3
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcccc-CCCCC---------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSF-DSQVK--------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p---~~G~~~-~~~~~--------- 121 (229)
.+++++++++|++. +.|++||+++|+|+||||||||+++|+|+.. ..| ++|++. .+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND-LNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc-cCCCCCccceEEECCEECcCcccchHh
Confidence 35567777777654 2388999999999999999999999999851 036 589853 33221
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~ 193 (229)
....+++. ++... .. .++.+++.+.....+.... .....+.++++.++. ..+.++..||+||+||+++
T Consensus 84 ~~~~i~~v~-q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 84 LRKEIGMVF-QQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hhhcEEEEe-cCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 12355543 33322 21 4788887655433332211 112334455555542 2467788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 187
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.94 E-value=4.9e-27 Score=187.88 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=91.9
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++|++++|+|+||||||||+++|+|++ .|++|++.... ....+++ .++... . ..++.+++.+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~~--~~~i~~~-~q~~~~-~--~~tv~~nl~~~----- 87 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW---PWGSGRIGMPE--GEDLLFL-PQRPYL-P--LGTLREQLIYP----- 87 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECC--CceEEEE-CCCCcc-c--cccHHHHhhcc-----
Confidence 348999999999999999999999999999 89999965443 2345553 333321 1 13555554321
Q ss_pred CCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+...||+||+||+++|++++.+|+++|+|||+++||+..++.+.+++.+
T Consensus 88 -----------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 88 -----------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred -----------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999988764
No 188
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.1e-27 Score=198.00 Aligned_cols=158 Identities=16% Similarity=0.062 Sum_probs=112.0
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~-------- 121 (229)
++++++++.|++. +.+.+||+++|+|+||||||||+++|+|+. .| ++|++. ++..+
T Consensus 5 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 5 MESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN---DLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CcccCCCCccEEEECCEecccccccHH
Confidence 3455566666543 338899999999999999999999999998 54 789853 33222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++..... .++.+++.+.....+... ......+.++++.++. ..+.++..||+||+||++
T Consensus 82 ~~~~~i~~~~-q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 82 ELRKRVGMVF-QKPNPFP---MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHhheEEEe-cCCCcCC---CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 12355543 4433221 577788765443333211 1112334455555542 246778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988864
No 189
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.4e-27 Score=199.54 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=111.4
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCcccc-CCCCC----------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSF-DSQVK---------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~~-~~~~~---------- 121 (229)
.+++++++++|++. +.|++|++++|+|+||||||||+|+|+|++.... |++|++. ++..+
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 46677777777654 2388999999999999999999999999972000 4789854 33222
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhhhh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~a~ 195 (229)
...++++. ++... .. .++.+++.+.....+.. ......+..+++.++. ..+.++..||+||+||+++|+
T Consensus 90 ~~~i~~v~-q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 90 RRRIGMVF-QKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred hhhEEEEc-cCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 12355543 33221 11 36777766543322221 1112233334443332 245678899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+|||+++||+..+..+.+++..
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 196 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHE 196 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 190
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.8e-27 Score=202.35 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=116.3
Q ss_pred cccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCcccc-CCCCC-------
Q 026996 59 VQNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSF-DSQVK------- 121 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~~-~~~~~------- 121 (229)
+...+.++++++.|++.. .|.+|++++|+|+||||||||+++|+|+..... |++|++. ++..+
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 344677888998887642 388999999999999999999999999861001 4999954 33221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
...++++ .++... .. .++.+++.+.....+.... .....+.++++.++. ..+.++..||+||+||+
T Consensus 116 ~~~~~~i~~v-~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 116 VLLRKKIGMV-FQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred HHhhhcEEEE-CCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 1235553 344322 21 3788887765433332211 112234445554432 34677889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+|||+++||+..+..+.+++..
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998864
No 191
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.5e-27 Score=197.69 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=111.5
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--C---CCccc-cCCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--P---QKASS-FDSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p---~~G~~-~~~~~~-------- 121 (229)
+.++++++.|++. +.|++||+++|+|+||||||||+++|+|++ . | ++|++ +++..+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN---DLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEccccccchH
Confidence 4556666666554 338899999999999999999999999987 4 3 68985 333222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++... . . .++.+++.+.....+... ......+.+.++.++. ..+.++..||+||+||++
T Consensus 81 ~~~~~i~~~~-q~~~~-~-~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14240 81 QLRKRVGMVF-QQPNP-F-P-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC 156 (250)
T ss_pred HHhccEEEEe-cCCcc-C-c-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH
Confidence 12345543 33321 2 1 477788765543333211 1112334445554432 236778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||...+..+.+++.+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 157 IARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988864
No 192
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.6e-27 Score=222.24 Aligned_cols=163 Identities=16% Similarity=0.108 Sum_probs=122.0
Q ss_pred cchhhhhhhhhcCC-----------c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC
Q 026996 61 NKTSLKVLCSQRRE-----------I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~-----------~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~ 121 (229)
..+++++|++.|+. . +.|++||++||+|+||||||||+|+|+|++ +|++|++.. +..+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~---~p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV---ESQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCcEEEECCEEC
Confidence 45788889988851 1 238899999999999999999999999999 899999643 3222
Q ss_pred -----------CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC-CCccHHHHHHHHHhhhhc---CCCCCCCCCcc
Q 026996 122 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 186 (229)
Q Consensus 122 -----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG 186 (229)
...++++ .++.+......+++.+++.......+.. .......+.++++.++.. .+.++.+||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v-~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFI-FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CcCCHHHHHHhcCCeEEE-ecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 1245664 4454212223367888876544333321 112234566777777653 47889999999
Q ss_pred ccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||+|++.+|++||+||||++||...+.++.+++.+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854
No 193
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.3e-27 Score=198.10 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=112.1
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~-------- 121 (229)
+++++++++|++. +.+++|++++|+|+||||||||+++|+|++ .| ++|++. ++...
T Consensus 4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN---DHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc---cCCCCCCcceEEEECCEEcccchhhHH
Confidence 4566666666543 338999999999999999999999999998 53 899853 33221
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhhc------CCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++.... . .++.+++.+.....+... ......+.+.++.++.. .+.++..||+||+||++
T Consensus 81 ~~~~~i~~~~-q~~~~~--~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 81 EYRKKVGMVF-QKPTPF--P-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred HhhhhEEEEe-cCCccC--c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence 12355543 333222 1 477788765443322211 11222344555554432 46778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||...+..+.+++..
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 194
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-27 Score=219.43 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=116.5
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.++++++++.|++.. .|++|+++||+||||||||||+|+|+|++ .|++|++. .+..+. ..
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH---EPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc---CCCccEEEECCEECCCCCHHHHHHCC
Confidence 366778888887652 38899999999999999999999999999 89999964 332221 23
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHh----cCCC---CCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~g~~---~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~ 195 (229)
.+++.+....+ ..+++.+++.+.... .+.. .......+.++++.++.. .+.++.+|||||+||+++|+
T Consensus 82 i~~v~q~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 82 IGIIYQELSVI---DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158 (510)
T ss_pred eEEEeeccccc---CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 56644332221 125777776542210 1110 011123456667766653 46788899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+||||++||+..+.++.+++.+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 195
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4e-27 Score=223.72 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=118.1
Q ss_pred cccccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEe
Q 026996 57 SLVQNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (229)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i 129 (229)
+.+..+++++++++.|++.. .|.+|+++||+||||||||||+|+|+|++ .|++|++..+. ...+|++.
T Consensus 307 ~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~---~p~~G~i~~~~--~~~igy~~ 381 (638)
T PRK10636 307 SLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL---APVSGEIGLAK--GIKLGYFA 381 (638)
T ss_pred cCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECC--CEEEEEec
Confidence 34566789999999998753 38899999999999999999999999999 89999975543 12456643
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
++.........++.+++. . .........+.++++.+++. .+.++..|||||||||++|++++.+|++|||
T Consensus 382 -Q~~~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL 454 (638)
T PRK10636 382 -QHQLEFLRADESPLQHLA---R---LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454 (638)
T ss_pred -CcchhhCCccchHHHHHH---H---hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 332111111122222211 1 11122334567777777653 4678999999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||......+.+++..
T Consensus 455 DEPt~~LD~~~~~~l~~~L~~ 475 (638)
T PRK10636 455 DEPTNHLDLDMRQALTEALID 475 (638)
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 196
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.7e-27 Score=192.68 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=94.5
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC---CCCcccc-CCCCC-------CCcEEEEeecCCccccCccCChhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW---PQKASSF-DSQVK-------PPDVATVLPMDGFHLYLSQLDAME 145 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~---p~~G~~~-~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~ 145 (229)
.+++|++++|+|+||||||||+++|+|++ + |++|++. ++... ....+++.+...++ . .+++.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~-~--~~tv~~ 102 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF-P--TLTVRE 102 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccC---CCCCCcceEEEECCEECccchhhhcceEEEEecccccC-C--CCcHHH
Confidence 38999999999999999999999999999 7 8999853 33221 12345433322221 1 246666
Q ss_pred hHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 146 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
++.+..... .+.++..||+||+||+++|++++.+|+++|+|||+++||+..++.+.+++
T Consensus 103 ~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 161 (202)
T cd03233 103 TLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI 161 (202)
T ss_pred HHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 654321100 45677899999999999999999999999999999999999999999988
Q ss_pred Hh
Q 026996 226 DE 227 (229)
Q Consensus 226 ~~ 227 (229)
.+
T Consensus 162 ~~ 163 (202)
T cd03233 162 RT 163 (202)
T ss_pred HH
Confidence 65
No 197
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=4.3e-27 Score=218.44 Aligned_cols=156 Identities=17% Similarity=0.072 Sum_probs=116.6
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.++++++++.|++.. .|++|++++|+||||||||||+|+|+|++ .|++|++. .+..+. ..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV---PPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHHHhCC
Confidence 466777888777642 38899999999999999999999999999 89999964 332221 23
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
.+++. ++.... ..+++.+++.+... ........+.++++.++.. .+.++..||||||||+++|++++.+|+
T Consensus 88 i~~v~-q~~~~~--~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ 160 (510)
T PRK15439 88 IYLVP-QEPLLF--PNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160 (510)
T ss_pred EEEEe-ccCccC--CCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 56644 333221 22577777654221 1112234566677766653 467888999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+.++.+++.+
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 198
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.94 E-value=1.7e-26 Score=193.01 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=106.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC---CCcEEEEeecCCccccCccCChhhhHHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 152 (229)
.+++|++++|+|+||||||||+++|+|++ .|++|++.. +... ....+++.+...+ ......++.+++.+...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~-~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLI---PPAKGTVKVAGASPGKGWRHIGYVPQRHEF-AWDFPISVAHTVMSGRT 77 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCccchHhhCcEEEecccccc-cCCCCccHHHHHHhccc
Confidence 47899999999999999999999999999 899999644 4322 2345664433222 11112466666554311
Q ss_pred h-cCC---CCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 153 R-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 153 ~-~g~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
. .+. ........+.++++.++.. .+.++..||+||+||+++|++++.+|+++|+||||++||+..+..+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1 011 1112233456666666543 467788999999999999999999999999999999999999999999886
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 158 ~ 158 (223)
T TIGR03771 158 E 158 (223)
T ss_pred H
Confidence 4
No 199
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=199.14 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=113.5
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCcccc-CCCCC-------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSF-DSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~~-~~~~~------- 121 (229)
.++++++++.|++.. .|++|++++|+|+||||||||+++|+|++ + |++|++. ++..+
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~---~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV---ELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---cCCCCCCCceeEEECCEEcccccccH
Confidence 577888888887542 38899999999999999999999999998 6 6999953 33221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCcc-HHHHHHHHHhh------hhcCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNL------RNQGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~l------~~~~~~~~~~lSgG~k~Rl 191 (229)
....+++ .++..... .++.+++.+.....+...... ...+.+.++.+ ....+.++..||+||+||+
T Consensus 101 ~~~~~~i~~v-~q~~~~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMV-FQKPNPFP---KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEE-ecCCcccc---ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 1235554 44433222 377788765433222211111 12233334332 2234677889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+||||++||+..+.++.+++..
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998864
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.7e-27 Score=197.48 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=110.3
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-----~G~~~-~~~~~-------- 121 (229)
+++++++++|++. +.|++|++++|+|+||||||||+|+|+|++ .|+ +|++. ++...
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH---DLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCcCCCCceeEEECCEEcccCccCHH
Confidence 4566677777654 238899999999999999999999999998 664 79853 33222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhh------hcCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~------~~~~~~~~~lSgG~k~Rl~ 192 (229)
...++++ .++.... ..+++.+++.......+.... ...+.+.+.++.++ ...+.++..||+||+||++
T Consensus 82 ~~~~~i~~~-~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 82 AMRRRVGMV-FQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred HhhceeEEE-eccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 1235554 3333222 225777887654332222111 11122333333332 2346778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||...+..+.+++..
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 201
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=1.7e-26 Score=193.20 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=105.5
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC---CCCcccc-CCCCC-----CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW---PQKASSF-DSQVK-----PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~---p~~G~~~-~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.+++||+++|+||||||||||+|+|+|++ . |++|++. .+... ....+++ .++.... ..+++.++
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~---~~~~~~~G~i~~~g~~~~~~~~~~~i~~~-~q~~~~~--~~~tv~en 101 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRV---EGGGTTSGQILFNGQPRKPDQFQKCVAYV-RQDDILL--PGLTVRET 101 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCcc---CCCCCCceEEEECCEECChHHhcccEEEe-CCCCccC--cCCcHHHH
Confidence 348999999999999999999999999999 7 8999954 33222 2335554 3333222 22688888
Q ss_pred HHHHHHhcCCCC---CccHHHHHH-HHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 147 PKEAHARRGAPW---TFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 147 ~~~~~~~~g~~~---~~~~~~~~~-~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
+.+......... ........+ .++.++.. .+..+..||+||+||+++|++++.+|+++|+|||+++||+..+..
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~ 181 (226)
T cd03234 102 LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181 (226)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHH
Confidence 876433222111 111112223 45554432 456788999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+++.+
T Consensus 182 ~~~~l~~ 188 (226)
T cd03234 182 LVSTLSQ 188 (226)
T ss_pred HHHHHHH
Confidence 9998865
No 202
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=211.85 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=119.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---------CCcEEEEeecCCccccCccCChhhhH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~---------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
+.+||++||||+||||||||.|+|+|++ .|++|++ +.+... ......+++||.+...++..++.+.+
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~---~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i 390 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL 390 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHH
Confidence 8899999999999999999999999999 8999994 444431 11234556788887777778888888
Q ss_pred HHHHHhcCCCC-CccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 148 KEAHARRGAPW-TFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 148 ~~~~~~~g~~~-~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
.......+... ......+.++++.++.. .++++++||||||||++|||||+.+|+++|+|||++.||+..+.++.+
T Consensus 391 ~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 391 AEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred HhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 77766544322 22234567777776653 578999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 026996 224 MFDEK 228 (229)
Q Consensus 224 ll~~~ 228 (229)
++.+.
T Consensus 471 Ll~~l 475 (539)
T COG1123 471 LLKDL 475 (539)
T ss_pred HHHHH
Confidence 98653
No 203
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=2.4e-26 Score=194.94 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=101.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+|+||||||||+++|+|++ .|++|++..++. .++++ .++.... ...++.+++.......+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~---~p~~G~i~~~g~---~i~~~-~q~~~~~--~~~tv~e~l~~~~~~~~-- 90 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL---KPDEGDIEIELD---TVSYK-PQYIKAD--YEGTVRDLLSSITKDFY-- 90 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC---cCCCCeEEECCc---eEEEe-cccccCC--CCCCHHHHHHHHhhhcc--
Confidence 6789999999999999999999999999 899999654432 34553 3332211 12577776654322111
Q ss_pred CCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 158 WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
. ......++++.++. ..+.++..|||||+||+++|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 91 ~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 91 T--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred c--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 11223455555544 34678889999999999999999999999999999999999999999888765
No 204
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=195.99 Aligned_cols=158 Identities=17% Similarity=0.113 Sum_probs=110.7
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~-------- 121 (229)
++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ +| ++|++. .+..+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN---DLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc---ccccCCCCceEEEECCEEcccccchHH
Confidence 4566677777654 348899999999999999999999999998 65 589853 33221
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~ 193 (229)
....+++. ++... +. .++.+++.+.....+.... .....+.+.++.++. ..+.++..||+||+||+++
T Consensus 81 ~~~~i~~~~-q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 156 (249)
T PRK14253 81 LRIKVGMVF-QKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCI 156 (249)
T ss_pred HHhheeEEe-cCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHH
Confidence 12355543 33322 21 4777777654332222111 112233444544432 2356788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 157 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 205
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=1.1e-26 Score=188.23 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=92.3
Q ss_pred hhhhhhhhhc--CCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC---------CcEEEEe
Q 026996 63 TSLKVLCSQR--REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP---------PDVATVL 129 (229)
Q Consensus 63 ~~~~~l~~~~--~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~---------~~~g~~i 129 (229)
+++++++++| .+. +.+++|++++|+|+||||||||+++|+|++ .|++|++.. +.... ...+++.
T Consensus 5 l~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (182)
T cd03215 5 LEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR---PPASGEITLDGKPVTRRSPRDAIRAGIAYVP 81 (182)
T ss_pred EEEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCccCHHHHHhCCeEEec
Confidence 4555555554 233 459999999999999999999999999999 899998533 32211 1233322
Q ss_pred ecCCc-cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 130 PMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 130 ~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
++.. ......+++.+++.+.. . ||+||+||+++|++++.+|+++|+||
T Consensus 82 -q~~~~~~~~~~~t~~e~l~~~~-------------------------~-----LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 82 -EDRKREGLVLDLSVAENIALSS-------------------------L-----LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred -CCcccCcccCCCcHHHHHHHHh-------------------------h-----cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 2210 00011123333332210 0 99999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||+..++.+.+++..
T Consensus 131 P~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 206
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=1.1e-26 Score=216.02 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=119.4
Q ss_pred ccchhhhhhhhhcCC-----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC--CCC---C-
Q 026996 60 QNKTSLKVLCSQRRE-----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQV---K- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~-----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~--~~~---~- 121 (229)
...++++++++.|++ . +.|++|++++|+||||||||||+|+|+|++ +|++|++.. ++. .
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL---EPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEEecCCcccccc
Confidence 346888999999942 2 238899999999999999999999999999 899999643 321 0
Q ss_pred ----------CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc-------CCCCCCCCC
Q 026996 122 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFD 184 (229)
Q Consensus 122 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------~~~~~~~lS 184 (229)
...++++. ++.... ..+++.+++...... ..........+.++++.++.. .+.++.+||
T Consensus 354 ~~~~~~~~~~~~~i~~v~-q~~~l~--~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILH-QEYDLY--PHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred ccchhhHHHHhhhEEEEc-cCcccC--CCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 12356644 332211 236788887653221 222111223456677777663 367889999
Q ss_pred ccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 185 gG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||||+++|+|++.+|++||+||||++||+..++++.+++..
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~ 472 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998854
No 207
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=195.80 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=110.8
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccccc-CCCCC--------
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSF-DSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-----~G~~~-~~~~~-------- 121 (229)
++++++++.|++. +.|.+|++++|+|+||||||||+++|+|++ .|+ +|++. .+..+
T Consensus 5 l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN---DIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred EEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CccccCCcccEEEECCEEccccccChH
Confidence 4556666666654 238899999999999999999999999998 776 58853 33221
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~ 192 (229)
....+++ .++..... .++.+++.+.....+.... .....+...++.++. ..+.++..||+||+||++
T Consensus 82 ~~~~~i~~v-~q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 82 NLRKRVGMV-FQQPNPFP---KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred HhhceEEEE-ecCCccCc---CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 1235554 34432222 3677877654433332211 112233334443332 246778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+|||+++||+..+..+.+++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888864
No 208
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.3e-27 Score=200.71 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=109.8
Q ss_pred hhhhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----C-CcEEEE
Q 026996 63 TSLKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----P-PDVATV 128 (229)
Q Consensus 63 ~~~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----~-~~~g~~ 128 (229)
++++++++.|+ +. +.|++|++++|+|+||||||||+|+|+|++ .|++|++. ++... . ...+++
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV---RLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEhHHhhccceEEEe
Confidence 56677777774 33 238899999999999999999999999999 89999964 44322 1 235553
Q ss_pred eecCCccccCccCChhhhHHHHH-HhcCC---CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
.+...+.... .....+++.... ...+. ........+.++++.++. ..+.++..||+||+||+++|++++.+|+
T Consensus 84 ~q~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 84 PQSEEVDWSF-PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred ccccccccCC-CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3322221111 112333332110 00111 111122344556665554 3467889999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+|||+++||+..++.+.+++..
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRE 187 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 209
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=181.09 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=124.0
Q ss_pred hhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------------
Q 026996 64 SLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------------- 121 (229)
Q Consensus 64 ~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------------- 121 (229)
.+.++.+.||.... .+.||.+.++||+|+|||||+|.|+-+. .|.+|+. +.+...
T Consensus 4 rv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle---~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 4 QLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred EEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh---CCCCCeEEecccccccccCccHHHHHHH
Confidence 45566677776632 5689999999999999999999999887 8999993 322211
Q ss_pred CCcEEEEeecCCccccCccCChhhhHH-HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPK-EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
+.+.|.++++ +..+. .+++.+|+. ...+..|++.+....+..+++..|.. ..+..+-.|||||+|||+||||++
T Consensus 81 r~~vgmvfqq-y~lwp--hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 81 RRNVGMVFQQ-YNLWP--HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHhhhhhhhh-hccCc--hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence 3456775543 33222 378888854 44566788877777778888886654 567888899999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+.|+++++|||++.||++-..++.+++.+.
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel 187 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKEL 187 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.4e-27 Score=216.81 Aligned_cols=160 Identities=17% Similarity=0.088 Sum_probs=116.7
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC---------CCc
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~---------~~~ 124 (229)
.++++++++.|++. +.+++|++++|+|+||||||||+|+|+|++ +|++|++.. +..+ ...
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY---QPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEECCCCCHHHHHhCC
Confidence 35567777777654 238999999999999999999999999999 899999643 3222 124
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHh--cCC-CCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR--RGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--~g~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
++++.+....+ ..+++.+++.+.... .+. ........+.++++.++.. .+.++.+|||||+||+++|++++.
T Consensus 81 i~~v~q~~~~~---~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 81 VAIIYQELHLV---PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred EEEEEechhcc---CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence 66644332221 225777776653211 111 1111233456677766653 467788999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||+..+.++.+++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 211
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=196.81 Aligned_cols=159 Identities=15% Similarity=0.069 Sum_probs=113.4
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCccccC-CCCC-------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFD-SQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~~-~~~~------- 121 (229)
.+++++++++|++.. .+++||+++|+|+||||||||+|+|+|++ +| ++|++.. +..+
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~---~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS---ELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---CcccCCccceEEEECCEeccccccch
Confidence 356677777776542 38899999999999999999999999998 64 4898543 3221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
...++++. ++.... . .++.+++.+.....+. ........+.++++.++. ..+.++..||+||+||+
T Consensus 84 ~~~~~~i~~v~-q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 159 (259)
T PRK14260 84 NRLRRQIGMVF-QRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL 159 (259)
T ss_pred HhhhhheEEEe-cccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 12355543 443222 1 4788887654333221 111112334555555443 34677889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+||||++||...+..+.+++..
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS 195 (259)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 212
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=1.3e-26 Score=216.08 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=114.3
Q ss_pred hhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCccc-cCCCCC----
Q 026996 63 TSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK---- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~-~~~~~~---- 121 (229)
++++++++.|++ + +.|.+||++||+||||||||||+|+|+|++ +| ++|++ +.+..+
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL---PSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC---CCCcCCccceEEEECCEecccCC
Confidence 556667777742 1 238899999999999999999999999999 65 79995 333222
Q ss_pred --------CCcEEEEeecCCccccCccCChhhhHHHHHHh-cCCCCCccHHHHHHHHHhhhhc-----CCCCCCCCCccc
Q 026996 122 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGV 187 (229)
Q Consensus 122 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~ 187 (229)
...+|+++ ++........+++.+++...... .+.........+.++++.++.. .+.++.+|||||
T Consensus 83 ~~~~~~~~~~~ig~v~-Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 83 EQTLRGVRGNKIAMIF-QEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred HHHHHHHhcCceEEEe-cCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 02456644 44321111224555655433221 2322222334566777777653 367889999999
Q ss_pred cchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||+++|+|++.+|++||+||||++||+..+.++.+++.+
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 213
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=215.18 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=119.1
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
...+++++++++|++.. .|++|++++|+||||||||||+|+|+|++ .|++|++...+ ....|++. ++
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~---~p~~G~i~~~~--~~~i~~~~-q~ 390 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL---EPDSGTVKWSE--NANIGYYA-QD 390 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECC--ceEEEEEc-cc
Confidence 34688999999997652 38899999999999999999999999999 89999975443 23466643 33
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~ 209 (229)
........+++.+++.... . .......+.++++.++. ..+.++..|||||+||+++|++++.+|+++|+|||
T Consensus 391 ~~~~~~~~~t~~~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 391 HAYDFENDLTLFDWMSQWR---Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred ccccCCCCCcHHHHHHHhc---c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2211112256666543211 1 11224456677777754 34788999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHh
Q 026996 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~~~LD~~~~~~~~~ll~~ 227 (229)
|++||+..+..+.+++..
T Consensus 466 t~~LD~~~~~~l~~~l~~ 483 (530)
T PRK15064 466 TNHMDMESIESLNMALEK 483 (530)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 214
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=196.08 Aligned_cols=156 Identities=14% Similarity=0.028 Sum_probs=108.6
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCccccC-CCCC----------
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFD-SQVK---------- 121 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~~~-~~~~---------- 121 (229)
++++++.|++. +.|.+|++++|+|+||||||||+++|+|+. . |++|++.. +..+
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN---DFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---ccCCCCCcceEEEECCEehHhcccchHHH
Confidence 34455555433 348899999999999999999999999997 5 47999543 3221
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC--ccHHHHHHHHHhhhhc------CCCCCCCCCccccchhhh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~~ 193 (229)
....+++. ++..... .++.+++.+.....+.... .....+.++++.++.. .+.++..||+||+||+++
T Consensus 85 ~~~i~~v~-q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 85 RAKVGMVF-QKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred hhhEEEEe-cCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 12355543 4432222 2677776654322222111 1123345566666542 245778999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988864
No 215
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.7e-26 Score=194.81 Aligned_cols=161 Identities=17% Similarity=0.078 Sum_probs=111.9
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcccc-CCCCC---------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSF-DSQVK--------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p---~~G~~~-~~~~~--------- 121 (229)
.+++++++++|++. +.+.+|++++|+|+||||||||+++|+|++.. .| ++|++. .+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEcccccccHHH
Confidence 45667777777654 23889999999999999999999999998610 14 589853 33222
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCc-cHHHHHHHHHhhhh------cCCCCCCCCCccccchhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~ 193 (229)
....+++. ++..... .++.+++.+.....+..... ....+.+.++.++. ..+.++..||+||+||+++
T Consensus 84 ~~~~i~~~~-q~~~~~~---~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 84 LRKQVGMVF-QQPNPFP---FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred hcCeEEEEE-CCCccCC---CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 12355543 3332221 47778876544333321111 11233444444432 2456788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 216
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=1.3e-26 Score=220.19 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=122.1
Q ss_pred cccccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEe
Q 026996 57 SLVQNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (229)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i 129 (229)
+.+..+++++++++.|++.. .|.+|+++||+||||||||||+|+|+|++ +|++|++..+. ...+|++.
T Consensus 314 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~---~p~~G~i~~~~--~~~i~y~~ 388 (635)
T PRK11147 314 RSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL---QADSGRIHCGT--KLEVAYFD 388 (635)
T ss_pred CCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEECC--CcEEEEEe
Confidence 34566789999999998753 38899999999999999999999999999 89999976554 22466643
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
++... ....+++.+++..... ..........+.++++.+++. .+.++..||||||||+++|++++.+|++||+
T Consensus 389 -q~~~~-l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 389 -QHRAE-LDPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred -Ccccc-cCCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33211 1223577777654321 111111133456677766552 4778999999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||...+..+.+++..
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 217
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=8e-27 Score=216.04 Aligned_cols=158 Identities=17% Similarity=0.131 Sum_probs=113.2
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcccc-CCCCC---------CCc
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSF-DSQVK---------PPD 124 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p--~~G~~~-~~~~~---------~~~ 124 (229)
+++++++.|++. +.+++|+++||+||||||||||+|+|+|++ .| ++|++. .+..+ ...
T Consensus 3 ~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~---~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 3 EMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY---PHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 455666666554 238899999999999999999999999998 66 799964 33222 123
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhc--C--CCCCccHHHHHHHHHhhhhcC---CCCCCCCCccccchhhhhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~~~~---~~~~~~lSgG~k~Rl~~a~al 197 (229)
.+++.+....+ ..+++.+++.+..... + .........+.++++.++... +.++.+||||||||+++|+++
T Consensus 80 i~~v~q~~~~~---~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 80 IVIIHQELTLV---PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred EEEEeeccccC---CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 66654433221 2267777765532211 0 111111234566777766532 456889999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|+++|+||||++||+..+.++.+++.+
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRD 186 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 218
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=186.77 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=83.6
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-------CCcEEEEeecCCccccCccCChhhhH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
+.+.+||+++|+|+||||||||+++|+|++ .|++|++.. +... ....+++ .++..... ..++.++
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~-~q~~~~~~--~~tv~~~- 93 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEPEEVKRRIGYL-PEEPSLYE--NLTVREN- 93 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccchHhhhccEEEE-ecCCcccc--CCcHHHH-
Confidence 348999999999999999999999999999 889998532 2211 1122332 22211100 0122222
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+. ||+||+||+++|++++.+|+++|+|||+++||...+.++.+++..
T Consensus 94 ------------------------~~---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 94 ------------------------LK---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred ------------------------hh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 11 999999999999999999999999999999999999999998865
No 219
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.9e-27 Score=188.87 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=83.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC----------CcEEEEeecCCccccCccCChh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP----------PDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~----------~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
+.+++|++++|+|+||||||||+++|+|++ +|++|++. ++.... ...+++ .++..... .+++
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~-~q~~~~~~--~~t~- 93 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMV-FQDFALFP--HLTV- 93 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEE-ecCCccCC--CCCH-
Confidence 348999999999999999999999999999 88898743 221110 112221 11111000 0122
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
.+++... ||+||+||+++|++++.+|+++|+|||+++||...+..+.++
T Consensus 94 ------------------------~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~ 142 (178)
T cd03229 94 ------------------------LENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142 (178)
T ss_pred ------------------------HHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2222211 999999999999999999999999999999999999999998
Q ss_pred HHh
Q 026996 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+.+
T Consensus 143 l~~ 145 (178)
T cd03229 143 LKS 145 (178)
T ss_pred HHH
Confidence 865
No 220
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-26 Score=215.01 Aligned_cols=145 Identities=16% Similarity=0.067 Sum_probs=106.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---------CCcEEEEeecCCccccCccCChhhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
.+++|++++|+|+||||||||+|+|+|++ +|++|++. .+..+ ....+++. ++.... ..+++.++
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~-q~~~~~--~~~tv~~~ 93 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIY---QKDSGSILFQGKEIDFKSSKEALENGISMVH-QELNLV--LQRSVMDN 93 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCEECCCCCHHHHHhCCEEEEe-cccccc--cCCCHHHH
Confidence 38899999999999999999999999999 89999964 44322 12356644 333211 22577777
Q ss_pred HHHHHH-hcCC--CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 147 PKEAHA-RRGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 147 ~~~~~~-~~g~--~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
+.+... ..+. ........+.++++.++. ..+.++.+||||||||+++|++++.+|+++|+||||++||+..+.++
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 173 (491)
T PRK10982 94 MWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173 (491)
T ss_pred hhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Confidence 654321 1111 111112345566666654 34677889999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 026996 222 SSMFDE 227 (229)
Q Consensus 222 ~~ll~~ 227 (229)
.+++.+
T Consensus 174 ~~~l~~ 179 (491)
T PRK10982 174 FTIIRK 179 (491)
T ss_pred HHHHHH
Confidence 988865
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-26 Score=214.93 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=117.9
Q ss_pred cchhhhhhhhhcC---Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-CCCccccC-CCCC-------
Q 026996 61 NKTSLKVLCSQRR---EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFD-SQVK------- 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~---~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-p~~G~~~~-~~~~------- 121 (229)
..++++++++.|+ +. +.|++|++++|+|+||||||||+|+|+|++ + |++|++.. +..+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY---PGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC---CCCCCcEEEECCEECCCCCHHH
Confidence 3578888998883 22 238899999999999999999999999998 7 59999643 3222
Q ss_pred --CCcEEEEeecCCc-cccCccCChhhhHHHHHH--hcCC---CCCccHHHHHHHHHhhhhc---CCCCCCCCCccccch
Q 026996 122 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRGA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 190 (229)
Q Consensus 122 --~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~--~~g~---~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~R 190 (229)
...++++. ++.. ......+++.+++.+... ..+. ........+.++++.++.. .+.++..||||||||
T Consensus 335 ~~~~~i~~v~-q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 335 AIAQGIAMVP-EDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHCCCEEeC-cchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 12356643 3321 111123677777654321 1110 1111224466777877653 467889999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|++++.+|+++|+||||++||+..++++.+++..
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 222
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=2.7e-26 Score=215.04 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=116.0
Q ss_pred chhhhhhhhhcC-Ccc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 62 KTSLKVLCSQRR-EIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
.+++++|++.|+ +.. .|++|++++|+||||||||||+|+|+|++ .|++|++.... ...+|++. ++.
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~---~p~~G~i~~~~--~~~i~~v~-Q~~ 79 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD---KEFEGEARPAP--GIKVGYLP-QEP 79 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecC--CCEEEEEe-cCC
Confidence 467788888887 442 38899999999999999999999999999 89999975432 23466644 443
Q ss_pred ccccCccCChhhhHHHHHHh--------------cCCCCC---------------------cc-HHHHHHHHHhhhh-cC
Q 026996 134 FHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------FN-PLLLLNCLKNLRN-QG 176 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~--------------~g~~~~---------------------~~-~~~~~~~l~~l~~-~~ 176 (229)
... +.+++.+++.+.... ...... ++ ...+.++++.++. ..
T Consensus 80 ~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 157 (556)
T PRK11819 80 QLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW 157 (556)
T ss_pred CCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc
Confidence 221 236788877643210 011100 00 2234555565554 24
Q ss_pred CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.++..||||||||+++|++++.+|+++|+||||++||+..+..+.+++..
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999988864
No 223
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=1e-26 Score=214.88 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=108.9
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC--------CcEE
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP--------PDVA 126 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~--------~~~g 126 (229)
++++++++.|++. +.+++|++++|+||||||||||+|+|+|++ .|++|++.. +.... ...+
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~---~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL---PLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCceEEECCcccccCCHHHHHHHhc
Confidence 5566777777654 238899999999999999999999999999 899999643 32221 1134
Q ss_pred EEeecCCccccC-----ccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhc
Q 026996 127 TVLPMDGFHLYL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 127 ~~i~~~~~~~~~-----~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
++++........ ..+++.+++.. . ......+.++++.++.. .+.++.+||||||||+++|++++.
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQD-------E-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhccc-------c-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 433221110000 01222222110 0 11234556677766553 478899999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||+..+.++.+++.+
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~ 180 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLAS 180 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 224
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=2e-26 Score=215.78 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=120.6
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
...++++++++.|++.. .|++|++++|+||||||||||+++|+|++ +|++|++..+. ...++++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~---~p~~G~i~~~~--~~~i~~v~-q~ 393 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE---QPDSGTIKIGE--TVKLAYVD-QS 393 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCeEEEECC--ceEEEEEe-CC
Confidence 45688999999997653 38899999999999999999999999999 89999975544 22466644 44
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~ 209 (229)
.... ...+++.+++.......+... ......++++.++.. .+.++..|||||+||+++|++++.+|+++|+|||
T Consensus 394 ~~~~-~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 394 RDAL-DPNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred cccc-CCCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 2111 122678887765432122211 122344667766653 3678899999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHh
Q 026996 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~~~LD~~~~~~~~~ll~~ 227 (229)
|++||+..+..+.+++..
T Consensus 471 t~~LD~~~~~~l~~~l~~ 488 (552)
T TIGR03719 471 TNDLDVETLRALEEALLE 488 (552)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998865
No 225
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=2.6e-26 Score=215.22 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=120.9
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
...++++++++.|++.. .|.+|+++||+|+||||||||+|+|+|++ .|++|++..+. ...+|++. ++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~---~p~~G~i~~~~--~~~i~~v~-q~ 395 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE---QPDSGTIKIGE--TVKLAYVD-QS 395 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECC--ceEEEEEe-Cc
Confidence 34688999999998753 38899999999999999999999999999 89999976544 22467644 43
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~ 209 (229)
... ....+++.+++.+.....+.. ........+++.++.. .+.++..|||||+||+++|++++.+|+++|+|||
T Consensus 396 ~~~-~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 396 RDA-LDPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred hhh-cCCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 211 112367888776543222211 1122344567776653 3678999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHh
Q 026996 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~~~LD~~~~~~~~~ll~~ 227 (229)
|++||+..+..+.+++..
T Consensus 473 t~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 473 TNDLDVETLRALEEALLE 490 (556)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998865
No 226
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-26 Score=214.30 Aligned_cols=162 Identities=13% Similarity=0.040 Sum_probs=116.3
Q ss_pred chhhhhhhhhcCCc-----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC---------CCcEE
Q 026996 62 KTSLKVLCSQRREI-----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---------PPDVA 126 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~---------~~~~g 126 (229)
.++++++++.|+.. +.|++|++++|+||||||||||+|+|+|++ +|++|++.. +..+ ...++
T Consensus 265 ~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD---KRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---cCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 57788888766432 448999999999999999999999999999 899999643 3222 12356
Q ss_pred EEeecCC-ccccCccCChhhhHHHHHHhc--------CC-CCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhh
Q 026996 127 TVLPMDG-FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 127 ~~i~~~~-~~~~~~~l~~~~~~~~~~~~~--------g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~ 193 (229)
++. ++. .......+++.+++....... +. ........+.++++.++.. .+.++..||||||||+++
T Consensus 342 ~v~-q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 342 YIT-ESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred Ecc-CccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 643 331 011112257777765432110 11 0111123456677776653 467889999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-26 Score=198.68 Aligned_cols=158 Identities=16% Similarity=0.089 Sum_probs=110.7
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--------Ccccc-CCCCCC-----
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSF-DSQVKP----- 122 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~--------~G~~~-~~~~~~----- 122 (229)
+++++++.|++. +.|++|++++|+|+||||||||+|+|+|++ .|+ +|++. ++....
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~---~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL---TGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCcccccccCCceEEEECCEEcccCCHH
Confidence 455566666544 338999999999999999999999999999 888 89853 332221
Q ss_pred ---CcEEEEeecCCccccCccCChhhhHHHHHHhc----CCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhh
Q 026996 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 123 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~----g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~ 193 (229)
...++ +.++..... ..++.+++.+..... +.........+.++++.++.. .+.++.+||+||+||+++
T Consensus 80 ~~~~~~~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAV-LPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEE-ecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 12344 344432112 157777765432111 111111223455666665543 467889999999999999
Q ss_pred hhhhh---------cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~---------~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++ .+|+++|+||||++||+..+..+.+++.+
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999 49999999999999999999999998864
No 228
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=3.6e-26 Score=214.09 Aligned_cols=158 Identities=15% Similarity=0.020 Sum_probs=113.8
Q ss_pred chhhhhhhhhcC-Ccc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 62 KTSLKVLCSQRR-EIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
.++++++++.|+ +.. .|++|++++|+|+||||||||||+|+|++ .|++|++..+. ...+|++. ++.
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~---~p~~G~i~~~~--~~~i~~v~-Q~~ 77 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD---KEFNGEARPAP--GIKVGYLP-QEP 77 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecC--CCEEEEEe-ccC
Confidence 466778888886 442 38899999999999999999999999999 89999965432 23567644 433
Q ss_pred ccccCccCChhhhHHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHhhhhc-C
Q 026996 134 FHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNLRNQ-G 176 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~l~~~-~ 176 (229)
... ..+++.+++.+.... ....... ....+.++++.++.. .
T Consensus 78 ~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 155 (552)
T TIGR03719 78 QLD--PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW 155 (552)
T ss_pred CCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcc
Confidence 221 125788877643211 0111110 011233344444432 3
Q ss_pred CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.++..||||||||+++|++++.+|++||+||||++||+.....+.+++..
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999998764
No 229
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-26 Score=213.65 Aligned_cols=157 Identities=14% Similarity=0.056 Sum_probs=112.0
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCcc
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 135 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~ 135 (229)
++++++++.|++. +.|++|++++|+||||||||||+|+|+|++ +|++|++.... ...++++ .++...
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~---~p~~G~i~~~~--~~~i~~~-~q~~~~ 75 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL---EPSAGNVSLDP--NERLGKL-RQDQFA 75 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecC--CCEEEEE-eccCCc
Confidence 3455666667654 338999999999999999999999999999 89999965433 2346664 343322
Q ss_pred ccCccCChhhhHHHHHHh-----------cCCCC---------------------CccHHHHHHHHHhhhhcC---CCCC
Q 026996 136 LYLSQLDAMEDPKEAHAR-----------RGAPW---------------------TFNPLLLLNCLKNLRNQG---SVYA 180 (229)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~-----------~g~~~---------------------~~~~~~~~~~l~~l~~~~---~~~~ 180 (229)
. ..+++.+++.+.... .+.+. ......+.++++.++... +.++
T Consensus 76 ~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 153 (530)
T PRK15064 76 F--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM 153 (530)
T ss_pred C--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch
Confidence 1 225666665432100 00000 011234556677666532 3568
Q ss_pred CCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..|||||+||+++|++++.+|++||+||||++||+..+..+.+++.+
T Consensus 154 ~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999998753
No 230
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=2.4e-26 Score=193.42 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=98.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+++|++++|+|+||||||||+++|+|++ .|++|++..++ .. ...++++ .++..... .++.+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~~~~---~tv~~nl 96 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFY---VPENGRVLVDGHDLALADPAWLRRQVGVV-LQENVLFN---RSIRDNI 96 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCeehHhcCHHHHhhcEEEE-cCCchhcc---chHHHHh
Confidence 48899999999999999999999999999 89999964333 22 1235554 34433221 4666665
Q ss_pred HHHHHhcCCCCCccHHHHH---------HHHHhhh----hcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 148 KEAHARRGAPWTFNPLLLL---------NCLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~---------~~l~~l~----~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
..... . .....+. +.++.+. ...+.++..||+||+||+++|++++.+|+++|+|||+++||
T Consensus 97 ~~~~~--~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD 170 (237)
T cd03252 97 ALADP--G----MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170 (237)
T ss_pred hccCC--C----CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 43210 1 1111111 1222221 11245788999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 026996 215 GGVWKDVSSMFDE 227 (229)
Q Consensus 215 ~~~~~~~~~ll~~ 227 (229)
+..+..+.+++.+
T Consensus 171 ~~~~~~l~~~l~~ 183 (237)
T cd03252 171 YESEHAIMRNMHD 183 (237)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.9e-26 Score=196.44 Aligned_cols=158 Identities=16% Similarity=0.082 Sum_probs=110.1
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC-------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~------- 121 (229)
.+.++++++.|++. +.|.+||+++|+|+||||||||+++|+|++ .| ++|++. .+..+
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN---DLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc---ccccCCCcCceEEECCEecccccchh
Confidence 45667777777654 338999999999999999999999999997 43 689853 33221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh------hcCCCCCCCCCccccchhh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~------~~~~~~~~~lSgG~k~Rl~ 192 (229)
...++++. ++..... .++.+++.......+... .....+.+.++.++ ...+.++..||+||+||++
T Consensus 97 ~~~~~~i~~v~-q~~~l~~---~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVF-QRPNPFP---KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEc-cCCcccc---ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 12345543 3332211 266777655432222111 11122333444332 2346778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|++.+|+++|+||||++||...+..+.+++.+
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 232
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=1.1e-26 Score=193.37 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=97.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++..++ .. ....+++ .++..... .++.+++
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~~~~---~tv~e~l 98 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDIRQLDPADLRRNIGYV-PQDVTLFY---GTLRDNI 98 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCeEEECCEEhHHCCHHHHHhhEEEe-CCCCcccc---chHHHHh
Confidence 48999999999999999999999999999 89999964332 21 1234553 33332211 3555554
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhhc--CC-----------CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~-----------~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
.+. .. ......+.+.++.++.. .+ ..+..|||||+||+++|++++.+|+++|+||||++||
T Consensus 99 ~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD 172 (220)
T cd03245 99 TLG-----AP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172 (220)
T ss_pred hcC-----CC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 321 11 11222333444433221 11 2356999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 026996 215 GGVWKDVSSMFDE 227 (229)
Q Consensus 215 ~~~~~~~~~ll~~ 227 (229)
+..+..+.+++.+
T Consensus 173 ~~~~~~l~~~l~~ 185 (220)
T cd03245 173 MNSEERLKERLRQ 185 (220)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 233
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=1.9e-26 Score=185.53 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=82.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++|++++|+|+||||||||+++|+|++ +|++|++..++. .... .+.. ......+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~--------------~~~~--~~~~----~~~~~i~ 79 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGA--------------DISQ--WDPN----ELGDHVG 79 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCE--------------Eccc--CCHH----HHHhheE
Confidence 348899999999999999999999999999 889887533221 0000 0000 0001111
Q ss_pred C-CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 A-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~-~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+ ++...... .++.+++ ||+||+||+++|++++.+|+++|+|||+++||+..+.++.+++..
T Consensus 80 ~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 80 YLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred EECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 1 11110000 1233333 999999999999999999999999999999999999999998864
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.8e-26 Score=195.15 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=111.4
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cccc-cCCCCC-------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-----~G~~-~~~~~~------- 121 (229)
.++++++++.|++. +.+++|++++|+|+||||||||+++|+|++ .|+ .|++ +.+...
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN---ELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc---CCCCCccccceEEECCEEhhccccch
Confidence 35566777777553 338999999999999999999999999998 675 6764 333221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
....+++ .++... . . .++.+++.......+. +.......+.++++.++. ..+.++..||+||+||+
T Consensus 84 ~~~~~~i~~~-~q~~~l-~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 84 NRLRRQVSMV-HPKPNL-F-P-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred HHhhccEEEE-ecCCcc-C-c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 1124443 333221 1 1 4777777654333232 111112334556665543 23577889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+||||++||...+..+.+++.+
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 235
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-26 Score=197.43 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=112.6
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCccccC-CCCC-------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFD-SQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~~-~~~~------- 121 (229)
.+.+++++++|++.. .|++||+++|+|+||||||||+++|+|++ .| ++|++.. +..+
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN---DKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CcCCCCCCceEEEECCEEccccchhH
Confidence 467888888887653 38899999999999999999999999998 65 6898533 3221
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhhc------CCCCCCCCCccccchhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~ 192 (229)
....+++. ++... +. .++.+++.+....... ........+.+.++.++.. .+..+..||+||+||++
T Consensus 98 ~~~~~i~~v~-q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 98 EFRRRVGMLF-QRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHhhheEEec-cCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 12345543 33322 21 4777777654322211 1111112234455555432 24667899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++++.+|+++|+||||++||...++.+.+++.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988865
No 236
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-26 Score=193.89 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=111.9
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcccc-CCCCC---------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSF-DSQVK--------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p---~~G~~~-~~~~~--------- 121 (229)
.++++++++.|++. +.+++|++++|+|+||||||||+++|+|++.. .| ++|++. .+..+
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEccccccchhh
Confidence 35566777777654 23899999999999999999999999998720 13 489853 33221
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~ 193 (229)
....+++. ++..... .++.+++.+.....+... ......+.++++.++. ..+.++..||+||+||+++
T Consensus 85 ~~~~i~~~~-q~~~~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 85 LRRKIGMVF-QRPNPFP---KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhceEEEEe-cCCccCc---ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 12345543 3332222 378888776544333211 1112234445554432 2467788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++++.+|+++|+|||+++||+..+..+.+++..
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 194 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988865
No 237
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.1e-26 Score=180.85 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=113.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCC-CCCcEEE----EeecCCccccCccCChhhhHHHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-KPPDVAT----VLPMDGFHLYLSQLDAMEDPKEA 150 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~-~~~~~g~----~i~~~~~~~~~~~l~~~~~~~~~ 150 (229)
+.+.+||++-|.||||||||||||+|+|+. .|++|++.+.+. ....... ...+....-....+++.||+.+.
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl---~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~ 99 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLL---RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW 99 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHccc---CCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHH
Confidence 458999999999999999999999999999 999999765532 2111110 01111112223448999999998
Q ss_pred HHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 151 HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....+. .+...+.+.++.++. ..+.++..||-|||+|+++|+.++..+++.|+|||++.+|......+..++..
T Consensus 100 ~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~ 175 (209)
T COG4133 100 QRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175 (209)
T ss_pred HHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHH
Confidence 877664 234556677776654 56899999999999999999999999999999999999999999888888765
No 238
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.7e-26 Score=185.48 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=83.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++|++++|+||||||||||+|+|+|++ +|++|++..++ ..... .... ......+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g--------------~~~~~--~~~~----~~~~~i~ 79 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDG--------------VDLRD--LDLE----SLRKNIA 79 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECC--------------EEhhh--cCHH----HHHhhEE
Confidence 348999999999999999999999999999 88888743322 10000 0000 0001111
Q ss_pred C-CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 A-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~-~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+ ++...... .++.+++ ||+||+||+++|++++.+|+++|+|||+++||...+.++.+++.+
T Consensus 80 ~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 80 YVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred EEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 1 11111111 1233333 999999999999999999999999999999999999999998864
No 239
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.4e-26 Score=195.88 Aligned_cols=159 Identities=15% Similarity=0.052 Sum_probs=112.5
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCcccc-CCCCC-------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSF-DSQVK------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~~-~~~~~------- 121 (229)
.++++++++.|++. +.|++|++++|+|+||||||||+++|+|++ . |++|++. .+..+
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~---~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN---DLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC---CCccCCCCceEEEECCEECcccccCH
Confidence 46677777777654 238899999999999999999999999998 5 4899853 33221
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
....+++ .++... +. .++.+++.+.....+... ......+.+.++.++. ..+.++..||+||+||+
T Consensus 102 ~~~~~~i~~v-~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 102 AELRRRVGMV-FQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred HHHhccEEEE-ecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 1234553 333322 21 267777765433333211 1112334455554443 23567889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.6e-26 Score=194.75 Aligned_cols=157 Identities=15% Similarity=0.024 Sum_probs=111.3
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcccc-CCCCC---------
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-DSQVK--------- 121 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~~-~~~~~--------- 121 (229)
.++++.+.|++. +.+++|++++|+|+||||||||+++|+|++ .| ++|++. ++...
T Consensus 10 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 10 DCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN---DLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred EEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc---ccccCCCCceEEEECCEeccccccchHh
Confidence 344445555543 338999999999999999999999999998 65 789853 33222
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc------CCCCCCCCCccccchhhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~k~Rl~~a 194 (229)
....+++ .++..... .++.+++.+.....+.. ......+.++++.++.. .+.++..||+||+||+++|
T Consensus 87 ~~~~i~~v-~q~~~~~~---~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 87 VRRYIGMV-FQQPNPFS---MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhhceEEE-ecCCcccc---ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 1234554 33433221 57888876554332221 11223455666655432 2456778999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+|++.+|+++|+||||++||+..+.++.+++.+.
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~ 195 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988753
No 241
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=6.5e-26 Score=192.39 Aligned_cols=160 Identities=17% Similarity=0.080 Sum_probs=108.0
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCccccC-CCCCC-------Cc
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFD-SQVKP-------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl--~~~~~p~~G~~~~-~~~~~-------~~ 124 (229)
.++++++++.|++. +.+++||++||+|+||||||||+++|+|+ + .|++|++.. +.... ..
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~---~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY---KILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC---cCCCceEEECCEEcccCChhhhhe
Confidence 35667777777654 33889999999999999999999999997 4 699999533 32221 11
Q ss_pred --EEEEeecCCccccCccCChhhhHHHHHHhc----CCCCCc---cHHHHHHHHHhhhhc---CCCCCC-CCCccccchh
Q 026996 125 --VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGDPV 191 (229)
Q Consensus 125 --~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~----g~~~~~---~~~~~~~~l~~l~~~---~~~~~~-~lSgG~k~Rl 191 (229)
.++ +.++... ...++..+++....... +..... ....+.++++.++.. .+.++. .||+||+||+
T Consensus 84 ~~~~~-~~q~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 84 LGIFL-AFQYPIE--IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred eeEEE-Eeccccc--cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH
Confidence 222 2233221 11235555554322111 111000 112345566665543 345665 5999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|+++|+||||++||...++++.+++.+
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998864
No 242
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=4.7e-26 Score=212.33 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=119.1
Q ss_pred ccchhhhhhhhhcC-----------Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCC
Q 026996 60 QNKTSLKVLCSQRR-----------EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQV 120 (229)
Q Consensus 60 ~~~~~~~~l~~~~~-----------~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~ 120 (229)
...++++++++.|+ +. +.|++|+++||+||||||||||+|+|+|++ |++|++.. +..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence 34688899999884 22 238899999999999999999999999997 48999643 322
Q ss_pred C-----------CCcEEEEeecCCccccCccCChhhhHHHHHHhcC--CCCCccHHHHHHHHHhhhhc---CCCCCCCCC
Q 026996 121 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 184 (229)
Q Consensus 121 ~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g--~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS 184 (229)
+ ....+++. ++........+++.+++.+.....+ .........+.++++.++.. .+.++.+||
T Consensus 349 i~~~~~~~~~~~~~~i~~v~-q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVF-QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred ccccchhhHHHhhhceEEEE-eCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 1 12356644 3431111122678888766433221 11111234456777776653 467889999
Q ss_pred ccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 185 gG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||||+++|++++.+|+++|+||||++||+..+.++.+++.+
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864
No 243
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=2e-26 Score=183.86 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=85.6
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCcccc
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY 137 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~ 137 (229)
++++++.|++. +.+++||+++|+|+||||||||+++|+|++ .|++|++.. ++....
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~--------------~g~~~~ 65 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILV--------------DGKEVS 65 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEE--------------CCEECC
Confidence 44555566543 338999999999999999999999999999 788775322 221110
Q ss_pred CccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhh
Q 026996 138 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 138 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~ 217 (229)
. .+.. .......++ +.+||+||+||+++|++++.+|+++|+|||+++||+..
T Consensus 66 ~--~~~~---~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 66 F--ASPR---DARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred c--CCHH---HHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 0 0100 000011111 11199999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026996 218 WKDVSSMFDE 227 (229)
Q Consensus 218 ~~~~~~ll~~ 227 (229)
++++.+++.+
T Consensus 118 ~~~l~~~l~~ 127 (163)
T cd03216 118 VERLFKVIRR 127 (163)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 244
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.93 E-value=2.3e-26 Score=185.81 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=85.1
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++||+++|+|+||||||||+++|+|++ .|++|++..++ ... ... ........+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g--------------~~~-----~~~--~~~~~~~i~ 78 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDG--------------VPV-----SDL--EKALSSLIS 78 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECC--------------EEH-----HHH--HHHHHhhEE
Confidence 348999999999999999999999999999 78888643222 100 000 000011111
Q ss_pred C-CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 A-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~-~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+ ++...... .++.+++ +..||+||+||+++|++++.+|+++|+|||+++||...++.+.+++.+
T Consensus 79 ~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 79 VLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred EEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 1 11110000 1223333 779999999999999999999999999999999999999999998865
No 245
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=5e-26 Score=214.10 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=117.2
Q ss_pred ccchhhhhhhhhcCCcc------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 60 QNKTSLKVLCSQRREIP------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
...++++++++.|++.. .|.+||++||+||||||||||+|+|+|++ +|++|++... ..++++. ++.
T Consensus 338 ~~~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~---~p~~G~I~~~----~~i~y~~-Q~~ 409 (590)
T PRK13409 338 ETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL---KPDEGEVDPE----LKISYKP-QYI 409 (590)
T ss_pred ceEEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEEe----eeEEEec-ccc
Confidence 34678899999997642 26899999999999999999999999999 8999996543 2455543 332
Q ss_pred ccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 134 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
.. ...+++.+++........ ......++++.++. ..+.++.+|||||+|||++|++++.+|+++|+||||+
T Consensus 410 ~~--~~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 410 KP--DYDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred cC--CCCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 21 123678777664322111 11234566665554 3578899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh
Q 026996 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 ~LD~~~~~~~~~ll~~ 227 (229)
+||...+.++.+++.+
T Consensus 483 ~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 483 HLDVEQRLAVAKAIRR 498 (590)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998864
No 246
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.93 E-value=4.9e-26 Score=189.10 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=100.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhc
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (229)
+.|++|++++|+||||||||||+|+|+|++ +|++|++. .++... ..+ .... ..+.+++.+++.+.....
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~~~sG~i~~~~~~~~-~~~----~~~~--l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLD---APDEGDFIGLRGDAL-PLG----ANSF--ILPGLTGEENARMMASLY 77 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCCCEEEecCcee-ccc----cccc--cCCcCcHHHHHHHHHHHc
Confidence 459999999999999999999999999999 89999964 322110 111 1111 122368888887765544
Q ss_pred CCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 155 g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.........+.. +..+....+.++..||+||+||+++|++++.+|+++|+|||++.+|+..+..+.+++.
T Consensus 78 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 78 GLDGDEFSHFCYQ-LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred CCCHHHHHHHHHH-HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH
Confidence 4321111111111 1223344567889999999999999999999999999999999999999988888664
No 247
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.2e-26 Score=186.47 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=88.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----CCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
.+++|++++|+|+||||||||+++|+|++. ..|++|++. ++... ....+++.+...++ ..+++.+++.+..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~---~~~tv~~~l~~~~ 104 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPLDKNFQRSTGYVEQQDVHS---PNLTVREALRFSA 104 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEehHHHhhhceEEecccCccc---cCCcHHHHHHHHH
Confidence 489999999999999999999999999751 037899853 33221 22344433222211 1135555544321
Q ss_pred HhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
. + ..||+||+||+++|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 105 ~-------------------~--------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 105 L-------------------L--------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred H-------------------H--------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 0 0 08999999999999999999999999999999999999999998864
No 248
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.93 E-value=8.3e-26 Score=191.21 Aligned_cols=160 Identities=16% Similarity=0.076 Sum_probs=100.5
Q ss_pred hhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------CcEE
Q 026996 64 SLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PDVA 126 (229)
Q Consensus 64 ~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~~g 126 (229)
+++++++.|++. +.|++|++++|+|+||||||||+++|+|++. ..|++|++. ++.... ...+
T Consensus 3 ~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 3 SIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred EEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-CCCCceEEEECCCccccCCHHHHhhcceE
Confidence 344555555543 2388999999999999999999999999940 059999964 332221 1244
Q ss_pred EEeecCCccccCccCChhhhHHHHHHh---cCCCCCcc----HHHHHHHHHhhhhc---CCCCCC-CCCccccchhhhhh
Q 026996 127 TVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGVGDPVEDDI 195 (229)
Q Consensus 127 ~~i~~~~~~~~~~~l~~~~~~~~~~~~---~g~~~~~~----~~~~~~~l~~l~~~---~~~~~~-~lSgG~k~Rl~~a~ 195 (229)
++. ++..... .++...+....... .......+ ...+.+.++.++.. .+..+. .||+||+||+++|+
T Consensus 82 ~~~-q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 82 MAF-QYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred EEe-cCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 433 3322111 12222222111110 00000011 12234445544432 234454 79999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+||||++||...++.+.+++..
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 190 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNS 190 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987754
No 249
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=3.4e-26 Score=235.25 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=126.7
Q ss_pred ccchhhhhhhhhcCC--cc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------C
Q 026996 60 QNKTSLKVLCSQRRE--IP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------P 122 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~--~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~ 122 (229)
...+++++++|.|++ +. .|++||++||+|+||||||||+|+|+|++ .|++|++. .+..+ .
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll---~ptsG~I~i~G~~i~~~~~~~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT---TVTSGDATVAGKSILTNISDVH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEECCEECcchHHHHh
Confidence 345788899999986 22 38899999999999999999999999999 99999964 33222 2
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
..+|++.+.+.... .+++.+++.+....++.+.......+.++++.++. ..++++.+||||||||+++|+|++.+
T Consensus 2012 ~~IGy~pQ~~~L~~---~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDD---LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred hhEEEEeccccCCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 34677544433322 37899998876666665433223345566765554 45788999999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|+|+|||+++||+..++++.+++.+
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 250
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=3.6e-26 Score=179.81 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=109.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------CcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~--------~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+.+||+++|+||+|||||||+|+++-++ .|++|++ |.|.++. ..+.+..+....+. -++++|+
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li---sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg----~tVeDNl 97 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG----DTVEDNL 97 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc---CCCCceEEEcCccccccChHHHHHHHHHHHcCccccc----cchhhcc
Confidence 38999999999999999999999999999 9999995 4454331 11222222222211 2567776
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
.+...... +..+.......+..++.. ..+++..|||||+||.+++|-|..-|+||+|||+|+.||+.+.+.+.++
T Consensus 98 ifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m 175 (223)
T COG4619 98 IFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 (223)
T ss_pred ccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence 66555443 234667777788877654 5688899999999999999999999999999999999999999999998
Q ss_pred HHh
Q 026996 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+..
T Consensus 176 i~~ 178 (223)
T COG4619 176 IHR 178 (223)
T ss_pred HHH
Confidence 764
No 251
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=7.1e-26 Score=186.94 Aligned_cols=146 Identities=15% Similarity=0.098 Sum_probs=105.8
Q ss_pred hhhhhhhhhcCC--------c-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCc
Q 026996 63 TSLKVLCSQRRE--------I-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPD 124 (229)
Q Consensus 63 ~~~~~l~~~~~~--------~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~ 124 (229)
+++++++++|++ . +.+++|++++|+|+||||||||+++|+|++ .|++|++..++ .+ ...
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL---EAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEEhHHCCHHHHHhh
Confidence 445555555543 1 348999999999999999999999999999 89999964332 21 234
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
++++ .++..... .++.+++... .......+.+.++ .+.++..||+||+||+++|++++.+|+++
T Consensus 84 i~~v-~q~~~~~~---~tv~~~l~~~-------~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~ll 147 (207)
T cd03369 84 LTII-PQDPTLFS---GTIRSNLDPF-------DEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVL 147 (207)
T ss_pred EEEE-ecCCcccC---ccHHHHhccc-------CCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 5664 34433221 3666665321 1122233333333 45678899999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|||+++||+..+..+.+++..
T Consensus 148 llDEP~~~LD~~~~~~l~~~l~~ 170 (207)
T cd03369 148 VLDEATASIDYATDALIQKTIRE 170 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 252
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4e-26 Score=191.02 Aligned_cols=138 Identities=19% Similarity=0.184 Sum_probs=96.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++..++ .. ....+++ .++..... .++.+++
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~~~~---~tv~~~~ 97 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFY---DPQKGQILIDGIDIRDISRKSLRSMIGVV-LQDTFLFS---GTIMENI 97 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEeHHHcCHHHHhhhEEEe-cCCchhhh---hHHHHHH
Confidence 48899999999999999999999999999 89999964332 21 1234553 33332111 2455554
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhh-------------hcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
.... . ......+.+.++.++ ...+.++..||+||+||+++|++++.+|+++|+|||+++||
T Consensus 98 ~~~~-----~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD 171 (229)
T cd03254 98 RLGR-----P-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171 (229)
T ss_pred hccC-----C-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 3211 1 111222222222111 11235578999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 026996 215 GGVWKDVSSMFDE 227 (229)
Q Consensus 215 ~~~~~~~~~ll~~ 227 (229)
+..++.+.+++..
T Consensus 172 ~~~~~~l~~~l~~ 184 (229)
T cd03254 172 TETEKLIQEALEK 184 (229)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 253
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.93 E-value=1.3e-26 Score=193.68 Aligned_cols=158 Identities=14% Similarity=0.067 Sum_probs=107.8
Q ss_pred chhhhhhhhhcCC---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------C
Q 026996 62 KTSLKVLCSQRRE---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~ 122 (229)
.+++++++++|++ . +.|++|++++|+||||||||||+++|+|++ .|++|++..++ .. .
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY---QPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCcEEEECCCchHHcCHHHHH
Confidence 3556666666653 1 338999999999999999999999999999 89999964433 22 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH----HHHHHHHHhh--hh--cCCCCCCCCCccccchhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP----LLLLNCLKNL--RN--QGSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~----~~~~~~l~~l--~~--~~~~~~~~lSgG~k~Rl~~a 194 (229)
...+++. ++..... .++.+++.+....... ..... ..+.+.++.+ +. ..+.++..||+||+||+++|
T Consensus 88 ~~i~~~~-q~~~l~~---~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 88 SKVSLVG-QEPVLFA---RSLQDNIAYGLQSCSF-ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hhEEEEe-cccHHHh---hhHHHHhccccCCCCH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 2355543 3332211 3555655432110000 00000 0123344444 22 24567889999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++++.+|+++|+|||+++||+..++.+.+++.+
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 254
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.4e-26 Score=194.33 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=98.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+++|++++|+||||||||||+++|+|++ .|++|++.. +... ...++++ .++..... .++.+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~~~~---~tv~enl 96 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFY---DVDSGRILIDGHDVRDYTLASLRRQIGLV-SQDVFLFN---DTVAENI 96 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc---cCCCCEEEECCEEhhhCCHHHHHhhEEEe-CCCCeecc---ccHHHHh
Confidence 48899999999999999999999999999 899999643 3222 1235553 34433221 3666665
Q ss_pred HHHHHhcCCCCCccHHHH---------HHHHHhh----hhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 148 KEAHARRGAPWTFNPLLL---------LNCLKNL----RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~---------~~~l~~l----~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
.+.... .....+ .+.++.+ ....+.++..||+||+||+++|++++.+|+++|+|||+++||
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 170 (234)
T cd03251 97 AYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD 170 (234)
T ss_pred hccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 432110 111111 2222222 112346688999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 026996 215 GGVWKDVSSMFDE 227 (229)
Q Consensus 215 ~~~~~~~~~ll~~ 227 (229)
...+..+.+++..
T Consensus 171 ~~~~~~l~~~l~~ 183 (234)
T cd03251 171 TESERLVQAALER 183 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 255
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=192.49 Aligned_cols=142 Identities=14% Similarity=0.096 Sum_probs=102.1
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.|++|++++|+|+||||||||+++|+|++ .|++|++..++. ... +.+.... ...+++.+++.......+
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~---~p~~G~I~~~g~----~~~-~~~~~~~--~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSL---SPTVGKVDRNGE----VSV-IAISAGL--SGQLTGIENIEFKMLCMG 114 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCE----EeE-EecccCC--CCCCcHHHHHHHHHHHcC
Confidence 459999999999999999999999999999 899999654431 122 2222211 122577777765433333
Q ss_pred CCCCccHHHHHHHHHhhh--hcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.........+..+++.++ ...+.++..||+||+||+++|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~ 188 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 221111122233444333 334678889999999999999999999999999999999999999998888754
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=4.3e-26 Score=211.15 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=116.3
Q ss_pred cchhhhhhhhhc---CCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCccccC-CCCC-------
Q 026996 61 NKTSLKVLCSQR---REI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFD-SQVK------- 121 (229)
Q Consensus 61 ~~~~~~~l~~~~---~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-~~G~~~~-~~~~------- 121 (229)
..++++++++.| ++. +.|.+||++||+|+||||||||+|+|+|++ +| ++|++.. +...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~---~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY---PGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC---CCCCCeEEEECCEECCCCCHHH
Confidence 357888888888 222 238899999999999999999999999999 75 8999643 3222
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHH--hcC---CCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~--~~g---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl 191 (229)
....+++.+..........+++.+++.+... ... .........+.++++.++.. .+.++..||||||||+
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 412 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH
Confidence 1235664332210001122577777654321 111 11111233456777777653 4678899999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|++++.+|++||+||||++||+..+..+.+++..
T Consensus 413 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 448 (500)
T TIGR02633 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ 448 (500)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999988765
No 257
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=5.3e-26 Score=189.29 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=99.1
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.+++|++++|+|+||||||||+++|+|++ .|++|++.. +... ....+++ .++..... .++.++
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~q~~~l~~---~tv~en 97 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLV---ELSSGSILIDGVDISKIGLHDLRSRISII-PQDPVLFS---GTIRSN 97 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhHhCCHHHHhhhEEEE-CCCCcccc---chHHHH
Confidence 348999999999999999999999999999 899999643 3221 2235553 33333221 356665
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHhhhh-------------cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 147 PKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+... .......+.+.++.++. ..+.++..||+||+||+++|++++.+|+++|+|||+++|
T Consensus 98 l~~~-------~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~L 170 (221)
T cd03244 98 LDPF-------GEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170 (221)
T ss_pred hCcC-------CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 4321 01122333333333321 123577899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|+..+..+.+++.+
T Consensus 171 D~~~~~~l~~~l~~ 184 (221)
T cd03244 171 DPETDALIQKTIRE 184 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998865
No 258
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.6e-26 Score=214.27 Aligned_cols=156 Identities=17% Similarity=0.016 Sum_probs=110.0
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCcc
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 135 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~ 135 (229)
+.+++|+++|++.. .|.+|+++||+||||||||||||+|+|++ .|++|++...+. ..+++ +.+....
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~---~pd~G~I~~~~~--~~i~~-~~q~~~~ 75 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI---SADGGSYTFPGN--WQLAW-VNQETPA 75 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecCC--CEEEE-EecCCCC
Confidence 45677888887753 38899999999999999999999999998 899999754432 23444 2332211
Q ss_pred ccCccCChhhhHH-----------------------HHHHhc----CCCCCccHHHHHHHHHhhhhc---CCCCCCCCCc
Q 026996 136 LYLSQLDAMEDPK-----------------------EAHARR----GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 185 (229)
Q Consensus 136 ~~~~~l~~~~~~~-----------------------~~~~~~----g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSg 185 (229)
.. .+...++. ...... ..........+..+++.+++. .+.++..|||
T Consensus 76 ~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSg 152 (638)
T PRK10636 76 LP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSG 152 (638)
T ss_pred CC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCH
Confidence 11 11111110 000000 000111234567778887763 4678999999
Q ss_pred cccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 186 G~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+||+++|++++.+|++|||||||++||......+.+++..
T Consensus 153 GerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888754
No 259
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=190.73 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=110.1
Q ss_pred hhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCccc-cCCCCC----------C
Q 026996 63 TSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVK----------P 122 (229)
Q Consensus 63 ~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~-~~~~~~----------~ 122 (229)
+.+++|++.|++. +.|.+|++++|+|+||||||||+++|+|+..... |++|++ +++..+ .
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 3455666666543 2388999999999999999999999999862111 489995 333222 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC-CccHHHHHHHHHhhhh------cCCCCCCCCCccccchhhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl~~a~ 195 (229)
...+++. ++..... .++.+++.+.....+... ......+.+.++.++. ..+.++..||+||+||+++|+
T Consensus 84 ~~i~~~~-q~~~~~~---~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 84 KKVGMVF-QKPNPFP---KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred hheEEEe-cCCccCc---chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 2355543 3332222 267777665433222211 1112234444554432 236778899999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+++|+|||+++||...+..+.+++.+
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998864
No 260
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=5.1e-26 Score=183.79 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=79.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+++|++++|+||||||||||+|+|+|++ +|++|++..++. ..+++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~---~i~~~~--------------------------- 67 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGI---TPVYKP--------------------------- 67 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCE---EEEEEc---------------------------
Confidence 47899999999999999999999999999 899987543320 111100
Q ss_pred CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+... ||+||+||+++|++++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 68 -q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 68 -QYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred -ccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0000 999999999999999999999999999999999999998888754
No 261
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=7.7e-26 Score=186.30 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=94.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.|++|++++|+|+||||||||+++|+|++ +|++|++..++ .++++. ++..... .++.+++.+...
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~---~~~~G~i~~~g----~i~~~~-q~~~l~~---~t~~enl~~~~~---- 91 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL---EKLSGSVSVPG----SIAYVS-QEPWIQN---GTIRENILFGKP---- 91 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcC---CCCCCeEEEcC----EEEEEe-cCchhcc---CcHHHHhccCCC----
Confidence 38999999999999999999999999999 89999965443 456643 3433221 466666543211
Q ss_pred CCCccHHHHHHHHH------hhhh-------cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 157 PWTFNPLLLLNCLK------NLRN-------QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 157 ~~~~~~~~~~~~l~------~l~~-------~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
.......+.++ .+.. ..+.+...||+||+||+++|++++.+|+++|+|||+++||+..++.+.+
T Consensus 92 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 168 (204)
T cd03250 92 ---FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168 (204)
T ss_pred ---cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 11111212221 1211 1234578999999999999999999999999999999999999888877
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=191.50 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=112.0
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCccc-cCCCCC--------
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK-------- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-----~~G~~-~~~~~~-------- 121 (229)
++++++++.|++.. .|++||+++|+|+||||||||+++|+|++ .| ++|++ +.+...
T Consensus 17 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH---DLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred EEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc---CCCCCCCcccEEEEcCccccccccccC
Confidence 66788888887642 38899999999999999999999999998 54 78985 333211
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC-ccHHHHHHHHHhhhh------cCCCCCCCCCccccch
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~k~R 190 (229)
....+++ .++..... .++.+++.+.....+.... ...+.+.+.++.++. ..+..+..||+||+||
T Consensus 94 ~~~~~~~i~~~-~q~~~~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 94 PIEVRMRISMV-FQKPNPFP---KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred HHHHhccEEEE-ccCCcCCc---chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 1234553 33332221 2677777654333332211 112334445554432 2356788999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|++++.+|+++|+|||+++||...+..+.+++..
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988864
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.7e-26 Score=192.84 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=97.5
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.|++|++++|+|+||||||||+++|+|++ .|++|++..++ .. ....+++. ++..... .++.++
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~-q~~~~~~---~tv~~n 94 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFY---DVSSGSILIDGQDIREVTLDSLRRAIGVVP-QDTVLFN---DTIGYN 94 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEhhhCCHHHHHhhEEEEC-CCChhhc---chHHHH
Confidence 348999999999999999999999999999 89999964433 22 12355543 3332221 366666
Q ss_pred HHHHHHhcCCCCCccHHHHHH---------HHHhhhh----cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 147 PKEAHARRGAPWTFNPLLLLN---------CLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~---------~l~~l~~----~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+.+... . .....+.. .++.+.. ..+.++..||+||+||+++|++++.+|+++|+|||+++|
T Consensus 95 l~~~~~-----~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~L 168 (236)
T cd03253 95 IRYGRP-----D-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168 (236)
T ss_pred HhhcCC-----C-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 543211 1 11111111 1122211 123457799999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|+..+..+.+++..
T Consensus 169 D~~~~~~l~~~l~~ 182 (236)
T cd03253 169 DTHTEREIQAALRD 182 (236)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998864
No 264
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=191.96 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=114.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCccc-cCCCCC-----------CCcEEEEeecCCccccCccC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK-----------PPDVATVLPMDGFHLYLSQL 141 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~--~~p~~G~~-~~~~~~-----------~~~~g~~i~~~~~~~~~~~l 141 (229)
+.|++||++||+|.|||||||+.+.|+|++.. ..-.+|++ +.+..+ +.+...++.|+.....++.+
T Consensus 26 ~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~ 105 (316)
T COG0444 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM 105 (316)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence 44999999999999999999999999999921 11246774 555422 22333446677766666556
Q ss_pred ChhhhHHHHHHhc-CC-CCCccHHHHHHHHHhhhhc-----CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 142 DAMEDPKEAHARR-GA-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 142 ~~~~~~~~~~~~~-g~-~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
++.+.+....... +. ...+..+.+.++++.++.. .+.++.+|||||+|||.||.|++.+|++||.||||.+||
T Consensus 106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALD 185 (316)
T COG0444 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185 (316)
T ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhh
Confidence 6555554444432 22 2333456778888877764 368899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh
Q 026996 215 GGVWKDVSSMFDEK 228 (229)
Q Consensus 215 ~~~~~~~~~ll~~~ 228 (229)
...|.++.+++++.
T Consensus 186 vt~QaqIl~Ll~~l 199 (316)
T COG0444 186 VTVQAQILDLLKEL 199 (316)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999764
No 265
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=2.5e-26 Score=193.40 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=97.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.+++|++++|+|+||||||||+++|+|++ +|++|++..++ .. ....+++. ++..... .++.++
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~-q~~~~~~---~tv~e~ 96 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFY---DPTSGEILLDGVDIRDLNLRWLRSQIGLVS-QEPVLFD---GTIAEN 96 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccC---CCCCCEEEECCEehhhcCHHHHHhhEEEEC-Cchhhhh---hhHHHH
Confidence 348999999999999999999999999999 89999964332 22 12355533 3322211 355555
Q ss_pred HHHHHHhcCCCCCccHHHHHH---------HHHhhh----hcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 147 PKEAHARRGAPWTFNPLLLLN---------CLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~---------~l~~l~----~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+.+... . ........ .++.+. ...+.++..||+||+||+++|++++.+|+++|+|||+++|
T Consensus 97 l~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gL 170 (238)
T cd03249 97 IRYGKP-----D-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170 (238)
T ss_pred hhccCC-----C-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 443211 0 01111111 112221 1234567899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|+..+.++.+++.+
T Consensus 171 D~~~~~~l~~~l~~ 184 (238)
T cd03249 171 DAESEKLVQEALDR 184 (238)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998865
No 266
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-26 Score=184.21 Aligned_cols=160 Identities=15% Similarity=0.143 Sum_probs=122.9
Q ss_pred hhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCc-------EEE
Q 026996 63 TSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPD-------VAT 127 (229)
Q Consensus 63 ~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~~~-------~g~ 127 (229)
+.+++|+|.|++..+ |++|.+++|||||||||||||.+++.++ ++++|++ +++..+... .-.
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~---~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL---KKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc---cccCceEEEeeeecccCChHHHHHHHH
Confidence 567899999998854 7899999999999999999999999999 8999995 444333211 112
Q ss_pred EeecCCccccCccCChhhhHHHHHH--hcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
++.+.+.. ...+++.+.+.+.+. ..|.+..+++..+.+.++.+.. -.+.+..+|||||+||..+|+.++.+.+.
T Consensus 79 ILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 79 ILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 22333332 223677666555432 2344556777888888887665 45788999999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHHHh
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++||||+..||-.+..++++++..
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHH
Confidence 999999999999998888887754
No 267
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=9.4e-26 Score=232.01 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=126.6
Q ss_pred ccchhhhhhhhhcC--Ccc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------C
Q 026996 60 QNKTSLKVLCSQRR--EIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------P 122 (229)
Q Consensus 60 ~~~~~~~~l~~~~~--~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------~ 122 (229)
...+++++|+|.|+ ++. .+.+||+++|+||||||||||+|+|+|++ .|++|++ +.+..+ +
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl---~PtsG~I~i~G~dI~~~~~~~r 1002 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL---PPTSGTVLVGGKDIETNLDAVR 1002 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC---CCCceEEEECCEECcchHHHHh
Confidence 44678899999995 332 28899999999999999999999999999 9999995 444332 2
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
...|++.+.+.. . ..+++.+++.+.....+.........+.++++.++. ..+.++.+||||||||+++|+|++.+
T Consensus 1003 ~~IG~~pQ~~~L-~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1003 QSLGMCPQHNIL-F--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred hcEEEEecCCcC-C--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 346664443332 2 237899998877665554433334456677776665 35778899999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+||||++||+..++.+.+++.+
T Consensus 1080 PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 268
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-25 Score=189.47 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=107.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC------------CCcEEEEeecCCccccCccCChh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK------------PPDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~------------~~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
++...+++|-|+||||||||+|+|+|+. +|++|.+..++ .. ..++|++| ||...+.+ +++.
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~---rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF-QDARLFpH--~tVr 94 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLT---RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF-QDARLFPH--YTVR 94 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccC---CccccEEEECCEEeecccCCcccChhhheeeeEe-eccccccc--eEEe
Confidence 4554799999999999999999999999 99999953332 21 35688865 45443333 6888
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
.|+.+..... ....+..+.+.|+. -.+.++.+|||||||||+|+|||...|++|+||||++.||.+.+++++
T Consensus 95 gNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 95 GNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168 (352)
T ss_pred cchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence 8887654332 33455556665554 357889999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 026996 223 SMFDE 227 (229)
Q Consensus 223 ~ll~~ 227 (229)
-+++.
T Consensus 169 pylER 173 (352)
T COG4148 169 PYLER 173 (352)
T ss_pred HHHHH
Confidence 87754
No 269
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=9.5e-26 Score=208.98 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=115.5
Q ss_pred chhhhhhhhh-cCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC---------CCcEEEEe
Q 026996 62 KTSLKVLCSQ-RREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---------PPDVATVL 129 (229)
Q Consensus 62 ~~~~~~l~~~-~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~---------~~~~g~~i 129 (229)
.++++++++. +.+. +.|.+||+++|+||||||||||+|+|+|++ +|++|++.. +..+ ...++++.
T Consensus 257 ~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~---~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 333 (501)
T PRK10762 257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL---PRTSGYVTLDGHEVVTRSPQDGLANGIVYIS 333 (501)
T ss_pred EEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHHHHCCCEEec
Confidence 4566666543 4444 569999999999999999999999999999 899999643 3222 12356643
Q ss_pred ecCCc-cccCccCChhhhHHHHHH-hc----C-CCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhc
Q 026996 130 PMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 130 ~~~~~-~~~~~~l~~~~~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
++.. ......+++.+++.+... .. + .........+.++++.++.. .+.++..||||||||+++|++++.
T Consensus 334 -q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 334 -EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred -CccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh
Confidence 3321 111122577777654321 11 1 11111233466777776652 477889999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||+..++.+.+++..
T Consensus 413 ~p~lllLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 413 RPKVLILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 270
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.92 E-value=3.1e-26 Score=217.93 Aligned_cols=156 Identities=16% Similarity=0.097 Sum_probs=116.2
Q ss_pred ccchhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------
Q 026996 60 QNKTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------- 121 (229)
...+++++++.+|+.. ..|++||++||+|+||||||||+|+|+|++ .|+.|++ +++.+.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly---~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY---KPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEeHHhcCHHHH
Confidence 3457788888888766 238999999999999999999999999999 9999996 444333
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhhcCCCCC----CCCCcccc
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYA----PSFDHGVG 188 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~~~----~~lSgG~k 188 (229)
+..+|+ +.++++.+. -+..+|+.. +.+... .+++.+... ++..+.+..+ ..||||||
T Consensus 546 R~~ig~-V~Q~~~Lf~---gSI~eNi~l-----~~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 546 RRQVGY-VLQDPFLFS---GSIRENIAL-----GNPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HhheeE-Ecccchhhc---CcHHHHHhc-----CCCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 455777 567776554 367777653 223222 233333322 3333334443 36999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
||+++|||+..+|+||||||+|+.||+...+.+.+.+.+.
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887653
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=1.2e-25 Score=184.08 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=87.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----CCcEEEEeecCCccccCccCChhhhHHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 149 (229)
+.+++|++++|+||||||||||+++|+|++. ..|++|++ +++... ....++ +.++.... ..+++.+++.+
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~-~~q~~~~~--~~~t~~~~i~~ 105 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGY-VPQDDILH--PTLTVRETLMF 105 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEE-ccCcccCC--CCCcHHHHHHH
Confidence 3489999999999999999999999999861 14888985 333322 122333 22222111 11344444332
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 150 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
... ...||+||+||+++|++++.+|+++|+|||+++||...++.+.+++.+
T Consensus 106 ~~~---------------------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 106 AAK---------------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred HHH---------------------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 110 018999999999999999999999999999999999999999998865
No 272
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=1.1e-25 Score=182.28 Aligned_cols=120 Identities=22% Similarity=0.201 Sum_probs=87.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+++|++++|+|+||||||||+++|+|++ .|++|++..+ +..... .+... .....++
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~--------------g~~~~~--~~~~~----~~~~i~~ 77 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLD--------------GKDLAS--LSPKE----LARKIAY 77 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEEC--------------CEECCc--CCHHH----HHHHHhH
Confidence 48999999999999999999999999999 7888854322 211100 01100 1111111
Q ss_pred CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 157 PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.. ++++.++. ..+.++..||+||+||+++|++++.+|+++|+||||++||...++.+.+++..
T Consensus 78 ~~--------q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 78 VP--------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HH--------HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 00 03443332 33567889999999999999999999999999999999999999999988764
No 273
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-25 Score=193.40 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=114.3
Q ss_pred ccchhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccC-----CCCcccc-CCCCC-----
Q 026996 60 QNKTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSF-DSQVK----- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-----p~~G~~~-~~~~~----- 121 (229)
...+.++++++.|++. +.|.+|++++|+|+||||||||+++|+|++ . |++|++. .+..+
T Consensus 43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~---~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN---DRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEcccccc
Confidence 3457788888888764 238899999999999999999999999998 5 6899953 33221
Q ss_pred -----CCcEEEEeecCCccccCccCChhhhHHHHHHhcC------------CCC-CccHHHHHHHHHhhhh------cCC
Q 026996 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------QGS 177 (229)
Q Consensus 122 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g------------~~~-~~~~~~~~~~l~~l~~------~~~ 177 (229)
....+++. ++... .. .++.+++.+.....+ ... ......+.++++.++. ..+
T Consensus 120 ~~~~~~~~i~~v~-q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 195 (305)
T PRK14264 120 NLVELRKRVGMVF-QSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195 (305)
T ss_pred cHHHHhhceEEEc-cCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc
Confidence 12355543 33221 21 377777765432211 000 1112334555555433 235
Q ss_pred CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 178 ~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.++..||+||+||+++|++++.+|++||+|||+++||...+..+.+++..
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~ 245 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE 245 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999998865
No 274
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=2.4e-25 Score=211.64 Aligned_cols=158 Identities=17% Similarity=0.028 Sum_probs=110.0
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 134 (229)
.+++++++++|++.. .|++|+++||+||||||||||||+|+|++ .|++|++...+. ...++ +.+...
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~---~p~~G~I~~~~~--~~~~~-l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV---LLDDGRIIYEQD--LIVAR-LQQDPP 76 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCeEEEeCCC--CEEEE-eccCCC
Confidence 356777888887653 38899999999999999999999999999 899999654331 12233 222111
Q ss_pred cccCccCChhhh------------------------------HHHHHHh---cC-CCCCccHHHHHHHHHhhhhcCCCCC
Q 026996 135 HLYLSQLDAMED------------------------------PKEAHAR---RG-APWTFNPLLLLNCLKNLRNQGSVYA 180 (229)
Q Consensus 135 ~~~~~~l~~~~~------------------------------~~~~~~~---~g-~~~~~~~~~~~~~l~~l~~~~~~~~ 180 (229)
.. ...++.++ +...... .. .........+.++++.+++..+.++
T Consensus 77 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 154 (635)
T PRK11147 77 RN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAAL 154 (635)
T ss_pred CC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCch
Confidence 00 00111111 1000000 00 0011123456677787777668889
Q ss_pred CCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..|||||+|||++|++++.+|++||+||||++||+.....+.+++..
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998864
No 275
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=1.5e-25 Score=205.66 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=103.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.|.+|+++||+|+||||||||+++|+|++ .|++|++..++.. .. +..... ....+++.+++.+.....+.
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl---~P~sGeI~I~G~~----~~-i~~~~~--l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVT---MPNKGTVDIKGSA----AL-IAISSG--LNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCceEEEECCEe----ee-EEeccc--cCCCCcHHHHHHhhhhhcCC
Confidence 48999999999999999999999999999 8999996443311 11 111111 11225788887654333332
Q ss_pred CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 157 PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
........+..+++.++. ..+.++..|||||+||+++|+|++.+|+++|+|||+++||+..+..+.+++.+
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 221112234455665544 34678899999999999999999999999999999999999999999888754
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.92 E-value=9.1e-26 Score=176.59 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=79.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++||+++|+|+||||||||+++|+|++ +|++|++..++. ...+++.+
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~--~~i~~~~~------------------------- 70 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST--VKIGYFEQ------------------------- 70 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe--EEEEEEcc-------------------------
Confidence 348999999999999999999999999999 788886433221 11111100
Q ss_pred CCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+||+||+++|++++.+|+++|+|||+++||...+..+.+++.+
T Consensus 71 ---------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 ---------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred ---------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998864
No 277
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=2.3e-25 Score=205.95 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=122.3
Q ss_pred cccccchhhhhhhhhcCCc-cc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEE
Q 026996 57 SLVQNKTSLKVLCSQRREI-PV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (229)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~-~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~ 128 (229)
+.++.+++++++++.|++. .+ |.+|++|||+||||+|||||||+|+|.. .|.+|++.++.. ..+|+
T Consensus 316 ~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~---~~~~G~v~~g~~--v~igy- 389 (530)
T COG0488 316 RLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL---GPLSGTVKVGET--VKIGY- 389 (530)
T ss_pred cCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc---ccCCceEEeCCc--eEEEE-
Confidence 4789999999999999663 22 8899999999999999999999999999 899998877763 34566
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
+.|+..... ...+..+++. ... .......+...+..+++. ..+++..||||||.|+.+|..+...|.+||
T Consensus 390 f~Q~~~~l~-~~~t~~d~l~---~~~---~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi 462 (530)
T COG0488 390 FDQHRDELD-PDKTVLEELS---EGF---PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462 (530)
T ss_pred EEehhhhcC-ccCcHHHHHH---hhC---ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence 444432211 1123333222 221 112256778888887764 468899999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||||+-||.+....+.+.+..
T Consensus 463 LDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 463 LDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred EcCCCccCCHHHHHHHHHHHHh
Confidence 9999999999999999887753
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=9.3e-26 Score=208.46 Aligned_cols=164 Identities=15% Similarity=0.011 Sum_probs=112.6
Q ss_pred ccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCccccC-CCCC---------
Q 026996 60 QNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFD-SQVK--------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p-~~G~~~~-~~~~--------- 121 (229)
...++++++++.|++.. .|++|++++|+||||||||||+|+|+|+. .| ++|++.. +...
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~---~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH---PQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CcccCCeEEEecccCCCCCCHHHH
Confidence 34688999999997652 38899999999999999999999999976 54 6999543 3211
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHh-cCCC---CCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a 194 (229)
...++++.+....... ...+..++....... .+.. .......+.++++.++.. .+.++..||||||||+++|
T Consensus 335 ~~~i~~v~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 335 KKHIGYVSSSLHLDYR-VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HhhceEECHHHHhhcc-cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 1224554322111111 012333332211100 0111 111123456777766653 3678889999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++++.+|+++|+||||++||+..++++.+++.+
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 446 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDV 446 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 279
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-25 Score=208.15 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=119.0
Q ss_pred ccccchhhhhhhhhcCCcc----------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----
Q 026996 58 LVQNKTSLKVLCSQRREIP----------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----- 121 (229)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~~----------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~----- 121 (229)
...-.+++++|+++|..++ .|++||++|||||||+||||+.++|..+| .|++|++ +++.++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY---~PtsG~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY---DPTSGRILLDGVPISDINH 537 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCCCeEEECCeehhhcCH
Confidence 3566788999999998773 28999999999999999999999999999 9999996 555444
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHH---------HHHHhhhhcCCCC----CCCCCc
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQGSVY----APSFDH 185 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~~~~~~~----~~~lSg 185 (229)
+..+|. +.|++..+. -++.||+.+... ....+.+. +.+.++..+-+.. ..+|||
T Consensus 538 ~~lr~~Ig~-V~QEPvLFs---~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 538 KYLRRKIGL-VGQEPVLFS---GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred HHHHHHeee-eeccceeec---ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 345666 566665433 378888776433 12222232 2333333333333 338999
Q ss_pred cccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 186 G~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||||++|||||+.+|.||||||.|++||.+....+.+.++.
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999998888887764
No 280
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=4.2e-25 Score=183.69 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=94.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC------------CCcEEEEeecCCccccCccCC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK------------PPDVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~------------~~~~g~~i~~~~~~~~~~~l~ 142 (229)
+.+++|++++|+|+||||||||+++|+|++ .|++|++..++ .. ....+++ .++..... .+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~-~q~~~~~~---~t 94 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKVHWSNKNESEPSFEATRSRNRYSVAYA-AQKPWLLN---AT 94 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCeEEECCcccccccccccchhhcceEEEE-cCCCcccc---cc
Confidence 348999999999999999999999999999 89999954332 21 1124443 33332221 36
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh-------------cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~ 209 (229)
+.+++.... . .......+.++.++. ..+.++..||+||+||+++|++++.+|+++|+|||
T Consensus 95 ~~~nl~~~~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 167 (218)
T cd03290 95 VEENITFGS-----P--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167 (218)
T ss_pred HHHHHhhcC-----c--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 666654321 1 111222223332221 12356789999999999999999999999999999
Q ss_pred cCCCChhhHHHHHH
Q 026996 210 YLFLDGGVWKDVSS 223 (229)
Q Consensus 210 ~~~LD~~~~~~~~~ 223 (229)
+++||+..++++.+
T Consensus 168 t~~LD~~~~~~l~~ 181 (218)
T cd03290 168 FSALDIHLSDHLMQ 181 (218)
T ss_pred ccccCHHHHHHHHH
Confidence 99999999888876
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.92 E-value=3.8e-25 Score=187.65 Aligned_cols=147 Identities=18% Similarity=0.094 Sum_probs=104.7
Q ss_pred CCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------CcEEEEeecCCccccCccCC
Q 026996 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP--------PDVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 73 ~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~--------~~~g~~i~~~~~~~~~~~l~ 142 (229)
.+. +.+++|++++|+|+||||||||+++|+|++ . .+|++. ++..+. ...+++. ++..... .++
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~---~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~-q~~~~~~--~~t 85 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL---P-GSGSIQFAGQPLEAWSAAELARHRAYLS-QQQTPPF--AMP 85 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---C-CCeEEEECCEecCcCCHHHHhhheEEec-ccCccCC--Ccc
Confidence 344 559999999999999999999999999987 4 589953 333221 1245543 3322111 256
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhc-------CCcEEEEcCCcCCC
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL-------QHKVVIVDGNYLFL 213 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~-------~~~illlDe~~~~L 213 (229)
+.+++.+... .+.........+.++++.++.. .+.++..||+||+||+++|++++. +|+++|+|||+++|
T Consensus 86 v~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 86 VFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred HHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 7777654321 1111111233456677766543 467889999999999999999997 67999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|+..+..+.+++.+
T Consensus 165 D~~~~~~l~~~L~~ 178 (248)
T PRK03695 165 DVAQQAALDRLLSE 178 (248)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998864
No 282
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.92 E-value=1.9e-25 Score=208.04 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=114.4
Q ss_pred chhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CCcE
Q 026996 62 KTSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PPDV 125 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~~~ 125 (229)
.+++++|+.+|++. +.+++|++++|+||||||||||+++|+|++ .|++|++. ++.++ +..+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL---DPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEhhhHHHHHHhhe
Confidence 37788888888652 238999999999999999999999999999 99999964 44322 2345
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---------hhcCCCCC----CCCCccccchhh
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVYA----PSFDHGVGDPVE 192 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---------~~~~~~~~----~~lSgG~k~Rl~ 192 (229)
++ +.|+.+.+. -+..+|+.+. .+ +.+.+++.++++.. ..+.+..+ ..||||||||++
T Consensus 411 ~~-V~Q~~~lF~---~TI~eNI~~g-----~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 411 SV-FAQDAHLFD---TTVRDNLRLG-----RP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred EE-EccCccccc---ccHHHHHhcc-----CC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 65 567776544 3788887643 11 12334444444432 22334333 369999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||++.+|+++|+||||+.||+...+++.+.+..
T Consensus 481 iARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 481 LARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764
No 283
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.3e-25 Score=206.42 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=112.5
Q ss_pred chhhhhhhh--hcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC---------CcEEEE
Q 026996 62 KTSLKVLCS--QRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP---------PDVATV 128 (229)
Q Consensus 62 ~~~~~~l~~--~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~---------~~~g~~ 128 (229)
.+++++++. .+.+. +.|++|+++||+||||||||||+|+|+|++ +|++|++.. +..+. ...++
T Consensus 257 ~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~- 332 (501)
T PRK11288 257 RLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT---RRTAGQVYLDGKPIDIRSPRDAIRAGIML- 332 (501)
T ss_pred EEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC---cCCCceEEECCEECCCCCHHHHHhCCCEE-
Confidence 344555442 23333 459999999999999999999999999999 899999644 32221 23444
Q ss_pred eecCCc-cccCccCChhhhHHHHHHhc----CC--CCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhh
Q 026996 129 LPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 129 i~~~~~-~~~~~~l~~~~~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
+.++.. ......+++.+++....... +. ........+.++++.++. ..+.++..||||||||+++|++++
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 333321 01112256777655322111 10 111122345677777765 247788999999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|++||+||||++||...+.++.+++..
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 441 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYE 441 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 284
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=2.6e-25 Score=195.68 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=101.5
Q ss_pred EECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 86 LAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 86 LiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
|+||||||||||+|+|+|++ +|++|++. ++..+ ....++++ ++.... ..+++.+|+.+.....+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~---~p~~G~I~i~g~~i~~~~~~~~~i~~v~-q~~~l~--~~~tv~enl~~~~~~~~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE---QPDSGSIMLDGEDVTNVPPHLRHINMVF-QSYALF--PHMTVEENVAFGLKMRKVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHCCEEEEe-cCcccc--CCCcHHHHHHHHHhhcCCCH
Confidence 68999999999999999999 99999964 33222 22466644 333222 22688888877654333222
Q ss_pred CccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 159 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
......+.++++.++.. .+.++.+|||||+||+++|++++.+|+++|+|||+++||+..+.++.+++.+
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 22233456667765543 4678889999999999999999999999999999999999999999988764
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=1.8e-25 Score=183.88 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=83.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------CcEEEEeecCCccccCccCChhhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
.+.+|++++|+|+||||||||+++|+|+.. ..|++|++. ++.... ...++ +.++..... ..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~--~~~---- 93 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIP--GVK---- 93 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhcc--Ccc----
Confidence 489999999999999999999999999830 168888743 332110 01222 111111000 001
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.+.+ +.....||+||+||+++|++++.+|+++|+||||++||...+.++.+++.
T Consensus 94 ---------------------~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~ 148 (200)
T cd03217 94 ---------------------NADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148 (200)
T ss_pred ---------------------HHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11111 22235899999999999999999999999999999999999999988876
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 149 ~ 149 (200)
T cd03217 149 K 149 (200)
T ss_pred H
Confidence 4
No 286
>PLN03211 ABC transporter G-25; Provisional
Probab=99.92 E-value=4.7e-25 Score=209.83 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=114.4
Q ss_pred hhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Ccccc-CCCCC----CCcEEEEee
Q 026996 65 LKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSF-DSQVK----PPDVATVLP 130 (229)
Q Consensus 65 ~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~--~G~~~-~~~~~----~~~~g~~i~ 130 (229)
.++++++|+++.+ +++||++||+||||||||||+++|+|.+ .|+ +|++. ++... ....+++ .
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~---~~~~~sG~I~inG~~~~~~~~~~i~yv-~ 146 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI---QGNNFTGTILANNRKPTKQILKRTGFV-T 146 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC---CCCceeEEEEECCEECchhhccceEEE-C
Confidence 4557778876533 8899999999999999999999999998 675 89954 33322 2345664 4
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCC----ccHHHHHHHHHhhhhcC-------CCCCCCCCccccchhhhhhhhhc
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~~~~~~l~~l~~~~-------~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
++..... .+++.|++.+..... .+.. .....+.++++.++... +..+..||||||||+++|++++.
T Consensus 147 Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 147 QDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred cccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 4433222 268999887654322 2211 12234566677665532 34567899999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++++|||+++||.....++.+++..
T Consensus 224 ~P~iLlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 224 NPSLLILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 287
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.1e-25 Score=202.77 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=121.8
Q ss_pred cchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC---------C
Q 026996 61 NKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---------P 123 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~---------~ 123 (229)
..+++++++|+|+++.. +.+||++||+|.||||||||+|+|+|.+ .|++|++ +++.... .
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~---~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY---PPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc---cCCCceEEECCEEccCCCHHHHHhC
Confidence 35778999999999843 8899999999999999999999999999 9999996 4444331 1
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhc---CC-CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhh
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---g~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al 197 (229)
-+.. ++|+--... .+++.+|+....... ++ .+........++++.++. ..+.++..||.||||.|+||+|+
T Consensus 84 GI~~-V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 84 GIAT-VHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred CcEE-EeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence 1333 344433222 389999976544322 22 112233445666776654 36788899999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+++++||||||+.|++...+.+.+++..
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999888888877654
No 288
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.1e-25 Score=187.14 Aligned_cols=148 Identities=18% Similarity=0.056 Sum_probs=107.9
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCC--------cEEEEeecCCccccCccCChhhhH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~--------~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
+.|++|+++|++|+|||||||++|||+|++ .|++|.+..++..+. +++.++.+-...++. +...+..
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll---~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd--lp~~ds~ 119 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD--LPALDSL 119 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCcc---ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee--chhhhhH
Confidence 459999999999999999999999999999 999998655443322 233322222222222 3444444
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
......+.++.+.-.++.....+-|.. ..+.+++.||-|||+|+.+|.+|.++|+||+|||||.+||...+..+++++
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Fl 199 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHH
Confidence 444455555543323334344443443 367899999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 026996 226 DEK 228 (229)
Q Consensus 226 ~~~ 228 (229)
.+-
T Consensus 200 ke~ 202 (325)
T COG4586 200 KEY 202 (325)
T ss_pred HHH
Confidence 763
No 289
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=7.3e-25 Score=186.79 Aligned_cols=138 Identities=15% Similarity=0.068 Sum_probs=96.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc------------CCCCCCC----------cEEEEeecCCcc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQVKPP----------DVATVLPMDGFH 135 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~------------~~~~~~~----------~~g~~i~~~~~~ 135 (229)
+.+|++++|+||||||||||+|+|+|++ +|++|++. .+..... ..+.+++ ...
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~---~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~--~~~ 97 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKL---KPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ--YVD 97 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc---CCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc--hhc
Confidence 7899999999999999999999999999 99999973 2322210 0111111 111
Q ss_pred ccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 136 LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+. + .+..+++... .........+.++++.++.. .+..+..||+||+||+++|++++.+|+++|+|||+++|
T Consensus 98 ~~-~-~~~~~~i~~~-----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~L 170 (255)
T cd03236 98 LI-P-KAVKGKVGEL-----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170 (255)
T ss_pred cC-c-hHHHHHHHHH-----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 11 0 1222222211 11112234556677766543 36778899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|+..+..+.+++.+
T Consensus 171 D~~~~~~l~~~l~~ 184 (255)
T cd03236 171 DIKQRLNAARLIRE 184 (255)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888888764
No 290
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=205.15 Aligned_cols=163 Identities=15% Similarity=0.056 Sum_probs=110.2
Q ss_pred cchhhhhhhhhc----CCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CCC---------CcE
Q 026996 61 NKTSLKVLCSQR----REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKP---------PDV 125 (229)
Q Consensus 61 ~~~~~~~l~~~~----~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~~---------~~~ 125 (229)
..++++++++.+ .+. +.+++||++||+|+||||||||+|+|+|+. +|++|++..++ ... ...
T Consensus 249 ~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 249 VILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR---EKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred cEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC---cCCccEEEECCEECCCCCHHHHHHCCC
Confidence 356777777654 222 449999999999999999999999999999 89999964432 221 113
Q ss_pred EEEeecCCc-cccCccCChhhh-----HHHHHHhcCC-CCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhh
Q 026996 126 ATVLPMDGF-HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 126 g~~i~~~~~-~~~~~~l~~~~~-----~~~~~~~~g~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~ 195 (229)
+++ .++.. ......++..++ +.......+. ........+.++++.++. ..+.++.+||||||||+++|+
T Consensus 326 ~~~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 326 ALV-TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred EEc-CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 442 23211 000111343333 1111111121 111112345566666654 247889999999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+|+|+||||++||+..+.++.+++..
T Consensus 405 al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 99999999999999999999999999998854
No 291
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=7.8e-25 Score=203.31 Aligned_cols=162 Identities=19% Similarity=0.117 Sum_probs=112.6
Q ss_pred chhhhhhhh-hcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCC---------CcEEEEe
Q 026996 62 KTSLKVLCS-QRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP---------PDVATVL 129 (229)
Q Consensus 62 ~~~~~~l~~-~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~~---------~~~g~~i 129 (229)
.++++++++ .+.+. +.|++|+++||+||||||||||+|+|+|++ +|++|++.. +..+. ..++++
T Consensus 268 ~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v- 343 (510)
T PRK15439 268 VLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR---PARGGRIMLNGKEINALSTAQRLARGLVYL- 343 (510)
T ss_pred eEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCcEEEECCEECCCCCHHHHHhCCcEEC-
Confidence 456666654 24444 569999999999999999999999999999 899999643 32221 134553
Q ss_pred ecCCc-cccCccCChhhhHHHHHH-hcCC--CCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 130 PMDGF-HLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 130 ~~~~~-~~~~~~l~~~~~~~~~~~-~~g~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
.++.. ......+++.+++..... .... ........+.++++.++.. .+.++..||||||||+++|++++.+|+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~ 423 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ 423 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC
Confidence 33210 001112466666532211 0111 1111223456777776653 467889999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||+||||++||+..++.+.+++..
T Consensus 424 lLlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 424 LLIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred EEEECCCCcCcChhHHHHHHHHHHH
Confidence 9999999999999999999998865
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=4.9e-25 Score=185.76 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=98.2
Q ss_pred hhhcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhH
Q 026996 69 CSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 69 ~~~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
+++.+++ +.|++||++||+|.||||||||-|+|.|++ +|++|+++..+ ..... ++
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g--------------~~i~~--~~----- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEG--------------KDITK--LS----- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcC--------------cchhh--cc-----
Confidence 3445555 569999999999999999999999999999 88888643221 11000 11
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
.....+.+.+.++.++. ...+++++|||||+||+++|||++.+|++++.|||++.||...+.++..+
T Consensus 82 ----------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnL 151 (268)
T COG4608 82 ----------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL 151 (268)
T ss_pred ----------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH
Confidence 11223456677776664 35689999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 026996 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+..
T Consensus 152 L~d 154 (268)
T COG4608 152 LKD 154 (268)
T ss_pred HHH
Confidence 864
No 293
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=191.82 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=114.4
Q ss_pred cchhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCccc-cCCCCC-------
Q 026996 61 NKTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK------- 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~--~p~~G~~-~~~~~~------- 121 (229)
..++++++++.|.+ . +.|++|+++||+|+||||||||+++|+|+.... .|++|++ +++..+
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 45778888888853 2 238999999999999999999999999998210 1579995 444332
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCcc-HHHHHHHHHhhhh------cCCCCCCCCCccccchh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~l~~------~~~~~~~~lSgG~k~Rl 191 (229)
....++ +.++...+. .++.+|+.+.....+...... ...+...++.... ..+.+...|||||+||+
T Consensus 159 ~~lr~~i~~-v~q~~~~~~---~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 159 LELRTRIGM-VFQKPTPFE---MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred HhhhccEEE-EecCCccCC---CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 223555 344443222 578888875433222221111 1123444544332 34577889999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||++.+|+|+|+|||+++||......+.+++..
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888764
No 294
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=201.61 Aligned_cols=158 Identities=16% Similarity=0.070 Sum_probs=113.2
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCc
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 134 (229)
.+.+.+++++|+++.+ +.+|+++||||+||||||||||+|+|.+ .|+.|++.... ..++++ +.|+..
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~---~~~~G~i~~~~--~~~v~~-l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL---EPDSGEVTRPK--GLRVGY-LSQEPP 76 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC---cCCCCeEeecC--CceEEE-eCCCCC
Confidence 4567788899988744 7899999999999999999999999999 99999975543 224555 344433
Q ss_pred cccCccCChhhhHHHHH-----------Hh------------------cCCCCCc-cHHHHHHHHHhhhhcC-CCCCCCC
Q 026996 135 HLYLSQLDAMEDPKEAH-----------AR------------------RGAPWTF-NPLLLLNCLKNLRNQG-SVYAPSF 183 (229)
Q Consensus 135 ~~~~~~l~~~~~~~~~~-----------~~------------------~g~~~~~-~~~~~~~~l~~l~~~~-~~~~~~l 183 (229)
.... .++.+.+.... .. ..-...+ ...++..++..|++.. +.++..|
T Consensus 77 ~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~L 154 (530)
T COG0488 77 LDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSL 154 (530)
T ss_pred cCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhc
Confidence 2211 13322211110 00 0000001 1234556666676655 7899999
Q ss_pred CccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 184 SgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||+|.|+++|++|..+|++|||||||+.||.+....+.+++..
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~ 198 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR 198 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888753
No 295
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.91 E-value=1.1e-24 Score=205.15 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=113.4
Q ss_pred chhhhhhhhhcCC--cc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--IP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++.+|++ .. .|++|+.++|+|+||||||||+++|+|++ .|++|++. ++.+. ..
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~---~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY---DIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCceEEECCEEhhhcCHHHHHh
Confidence 4778888888854 22 38899999999999999999999999999 99999964 44332 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcCCCCC----CCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~~----~~lSgG~k~R 190 (229)
.+++ +.++.+... -+..+|+.+. .+...+.+++.++++. +..+.+..+ ..|||||+||
T Consensus 418 ~i~~-v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR 488 (582)
T PRK11176 418 QVAL-VSQNVHLFN---DTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488 (582)
T ss_pred hceE-EccCceeec---chHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH
Confidence 3455 567766544 3677776432 2222344444444443 323333333 4699999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++||++..+|+++|+||||++||+....++.+.+..
T Consensus 489 i~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887754
No 296
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=7.8e-25 Score=196.25 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=121.6
Q ss_pred cchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC---------C
Q 026996 61 NKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---------P 123 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~---------~ 123 (229)
..+++++++|.|++.. .|++||+.||+|.||||||||+++|.|++ +|++|++ ++++.+. .
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~---~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY---QPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc---cCCcceEEECCEEeccCCHHHHHHc
Confidence 4567888999998763 38999999999999999999999999999 9999995 4454432 2
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhc-C-C-CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-A-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g-~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
-+|.+.|..... + .+|+.||+....... + . .......++.++.+.+++ ..+.++..||-|+||||.|.++|.
T Consensus 80 GIGMVhQHF~Lv-~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 80 GIGMVHQHFMLV-P--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred CCcEEeeccccc-c--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence 356654433332 2 279999987654321 1 1 112233445555665555 456788999999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|++|||||||+.|-|...+++.+.+..
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999888888877653
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=198.39 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=115.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC----Cccc-cCCCCC-----------C-CcEEEEeecCCccccCc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASS-FDSQVK-----------P-PDVATVLPMDGFHLYLS 139 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~----~G~~-~~~~~~-----------~-~~~g~~i~~~~~~~~~~ 139 (229)
.|.+||++||+|.|||||||+.+.|.|++ .+. +|++ +.+.++ . ..++. +.|+.+...++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll---~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~-i~Q~p~~slnP 106 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLL---PEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAM-IFQDPMTSLNP 106 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccC---CCCCcccceEEEECCcchhcCCHHHHHHhccccEEE-EecCchhhcCc
Confidence 38999999999999999999999999998 444 7885 444332 1 33454 67787776766
Q ss_pred cCChhhhHHHHHHhcC-CCCCccHHHHHHHHHhhhhcC----CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 140 QLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 140 ~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~----~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
..++...+.......+ ...++...++.++++.++... +.++++|||||+||+.+|+|++.+|++||+||||.+||
T Consensus 107 ~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLD 186 (539)
T COG1123 107 VMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186 (539)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 6666655555444433 334445667788888777532 35899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh
Q 026996 215 GGVWKDVSSMFDEK 228 (229)
Q Consensus 215 ~~~~~~~~~ll~~~ 228 (229)
...+.++.+++...
T Consensus 187 vt~q~qIL~llk~l 200 (539)
T COG1123 187 VTTQAQILDLLKDL 200 (539)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 298
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=2.5e-25 Score=216.95 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=115.5
Q ss_pred cccchhhhhhhhhcCCcc----------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------
Q 026996 59 VQNKTSLKVLCSQRREIP----------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------ 121 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~----------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------ 121 (229)
.+-.+++++|+++|..++ .|++|+.++|+|||||||||++++|.+++ .|++|++ ++|.++
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy---dP~~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY---DPTSGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCCceEEEcCccchhcchH
Confidence 344578889999998774 28899999999999999999999999999 8999996 454443
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHH---------HHHhhhhcCCC----CCCCCCcc
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQGSV----YAPSFDHG 186 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~~~~~~----~~~~lSgG 186 (229)
+..+|. +.|.+.... .++.||+.+. .+.. ..+++.+ .+..+....+. .-.+||||
T Consensus 424 ~lr~~igl-V~QePvlF~---~tI~eNI~~G-----~~da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGG 493 (1228)
T KOG0055|consen 424 WLRSQIGL-VSQEPVLFA---TTIRENIRYG-----KPDA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGG 493 (1228)
T ss_pred HHHhhcCe-eeechhhhc---ccHHHHHhcC-----CCcc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChH
Confidence 345666 445543322 4788887653 2221 1222222 22233333333 33469999
Q ss_pred ccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||||++.+|+||||||+|++||++..+.+.+.+|.
T Consensus 494 QKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~ 534 (1228)
T KOG0055|consen 494 QKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK 534 (1228)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 299
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=1.3e-24 Score=204.50 Aligned_cols=148 Identities=14% Similarity=0.052 Sum_probs=103.9
Q ss_pred hhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc------------CCCCCC------
Q 026996 68 LCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQVKP------ 122 (229)
Q Consensus 68 l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~------------~~~~~~------ 122 (229)
++++|+.. ..+++|+++||+||||||||||+|+|+|++ +|+.|++. .+..+.
T Consensus 79 ~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l---~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 79 PVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGEL---IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred ceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 67777653 238899999999999999999999999999 89999963 332210
Q ss_pred ----CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhh
Q 026996 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 123 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~a 196 (229)
...+..++.-.........++.+++.. ......+.++++.++.. .+.++..|||||+||+++|++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---------VDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHh---------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 111211111011000000133333321 01234556677766653 478899999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++|||||+++||+..+..+.+++..
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~ 257 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRE 257 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 300
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.7e-25 Score=178.77 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=100.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
+.+||+++|+||||||||||||.|+|.+ .|++|++.. +... ....+. +.++....+. +++.+.+.
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel---~p~~G~v~~~g~~l~~~~~~~lA~~raV-lpQ~s~laFp--Ftv~eVV~ 97 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPEELARHRAV-LPQNSSLAFP--FTVQEVVQ 97 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCcc---CCCCCeEeeCCcChhhCCHHHHHHHhhh-cccCcccccc--eEHHHHHH
Confidence 8899999999999999999999999999 899999543 3222 112233 3333321111 46777666
Q ss_pred HHHHhcCCCCC--ccHHHHHHHHHhhh--hcCCCCCCCCCccccchhhhhhhhhcC------CcEEEEcCCcCCCChhhH
Q 026996 149 EAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ------HKVVIVDGNYLFLDGGVW 218 (229)
Q Consensus 149 ~~~~~~g~~~~--~~~~~~~~~l~~l~--~~~~~~~~~lSgG~k~Rl~~a~al~~~------~~illlDe~~~~LD~~~~ 218 (229)
+.+.-.+...+ .+.+-...++.... -.......+|||||+|||.+||.|+.. +++|++||||+.||..++
T Consensus 98 mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ 177 (259)
T COG4559 98 MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177 (259)
T ss_pred hcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHH
Confidence 55444432222 33333455555433 344567789999999999999998753 458899999999999999
Q ss_pred HHHHHHHHh
Q 026996 219 KDVSSMFDE 227 (229)
Q Consensus 219 ~~~~~ll~~ 227 (229)
.....+..+
T Consensus 178 ~~tl~laR~ 186 (259)
T COG4559 178 HHTLRLARQ 186 (259)
T ss_pred HHHHHHHHH
Confidence 888877654
No 301
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=8e-25 Score=172.59 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=109.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC--C-C--------------CCcEEEEeecCCccccCc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ--V-K--------------PPDVATVLPMDGFHLYLS 139 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~--~-~--------------~~~~g~~i~~~~~~~~~~ 139 (229)
.++.||+++|-||+|+|||||||+|.|.| .||+|++.... . + ...+|++ .+ |....+
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY---~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyV-SQ--FLRviP 106 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANY---LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYV-SQ--FLRVIP 106 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhcc---CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHH-HH--HHHhcc
Confidence 38999999999999999999999999999 99999853321 1 1 1123331 11 111111
Q ss_pred cCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC---CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh
Q 026996 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 140 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~ 216 (229)
..+..+.........|.+.+....+....+..|.... ...+.++||||+|||.|||.++.+-+||++||||+.||..
T Consensus 107 RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~ 186 (235)
T COG4778 107 RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186 (235)
T ss_pred CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccccc
Confidence 2334444444455567666555666677777776543 5678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 026996 217 VWKDVSSMFDEK 228 (229)
Q Consensus 217 ~~~~~~~ll~~~ 228 (229)
++..+.+++.++
T Consensus 187 Nr~vVveli~e~ 198 (235)
T COG4778 187 NRAVVVELIREA 198 (235)
T ss_pred chHHHHHHHHHH
Confidence 999999999875
No 302
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=3.2e-24 Score=205.57 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=114.6
Q ss_pred ccchhhhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeec
Q 026996 60 QNKTSLKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~ 131 (229)
...++++++++.|++ . +.|.+|++++|+||||||||||||+|+|++ .|++|++..+. ...+|++ .+
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll---~p~~G~I~~~~--~~~igyv-~Q 579 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL---QPSSGTVFRSA--KVRMAVF-SQ 579 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCceEEECC--ceeEEEE-ec
Confidence 346888999999953 2 238899999999999999999999999999 89999976543 2346663 33
Q ss_pred CCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
+... .++..++........ .+ ......+.++++.++.. .+.++..||||||||+++|++++.+|++|||||
T Consensus 580 ~~~~----~l~~~~~~~~~~~~~-~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 580 HHVD----GLDLSSNPLLYMMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cccc----cCCcchhHHHHHHHh-cC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3211 123323322111111 11 12245567778877663 367889999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
||++||......+.+.+..
T Consensus 654 PT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999888887653
No 303
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.91 E-value=3.1e-25 Score=212.56 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=113.2
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++|+.+|++ . +.|++|+.+||+|+||||||||+|+|+|++ .|++|++ +++.+. +.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE---TPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEcCcCCHHHHHh
Confidence 4778888888842 2 238999999999999999999999999999 9999996 444333 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCCC----CCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG~k~R 190 (229)
.+++ +.|+.+... -|..+|+... .+ .+.+++.++++..+ .+.+.. ...||||||||
T Consensus 528 ~i~~-v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 528 QLGV-VLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred ccEE-EccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 4566 566666544 3677776542 12 23344444444322 222333 34799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||+.||+...+++.+.+..
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887764
No 304
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=3.2e-24 Score=182.84 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=102.4
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.++++++++.|++ . +.+++|++++|+|+||||||||+++|+|++ .|++|++. .+..+ ..
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV---DIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc---CCCCCeEEECCEEhhhCCHHHHhh
Confidence 3556667777754 2 238899999999999999999999999999 89999954 33222 12
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHH---------Hhh----hhcCCCCCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNL----RNQGSVYAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l---------~~l----~~~~~~~~~~lSgG~k~R 190 (229)
..+++ .++..... .++.+++.. ........+...+ +.+ ....+.+...||+||+||
T Consensus 96 ~i~~v-~q~~~l~~---~tv~~nl~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qr 164 (257)
T cd03288 96 RLSII-LQDPILFS---GSIRFNLDP-------ECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQL 164 (257)
T ss_pred hEEEE-CCCCcccc---cHHHHhcCc-------CCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHH
Confidence 34553 33332211 234333211 0011111122221 111 111234567999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|++++.+|+++|+||||++||+..+..+.+++..
T Consensus 165 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 165 FCLARAFVRKSSILIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888865
No 305
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.4e-25 Score=182.53 Aligned_cols=164 Identities=16% Similarity=0.053 Sum_probs=114.1
Q ss_pred cchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCC-----CC----CC
Q 026996 61 NKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-----VK----PP 123 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~-----~~----~~ 123 (229)
..+++++++..|+++.+ |++||..+|+|||||||||||++++|.+ .|++|.+ +.+. +. +.
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~---~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH---PPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc---CCCCCceeeeeeeccCCcchHHHHH
Confidence 45788888899988854 8899999999999999999999999999 8988873 2221 11 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHH-HHHhcCCCC----CccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhh
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~----~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~a 196 (229)
.+|.+-..-... +....++.+.+.- +....|+.+ +.+...+..+++.++.. .+++..+||-|||||+.||||
T Consensus 107 ~IG~vS~~L~~~-~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 107 RIGLVSSELHER-FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HhCccCHHHHhh-cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHH
Confidence 344321110000 0001122222111 112223322 23344566677766653 578899999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
++.+|++||||||+.+||...+..+.+.+.+.
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999998888764
No 306
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=5.6e-24 Score=169.73 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=106.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------CCcEEEEeecCCccccCccCChhhhH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
+.+++|+.+||||.||||||||.|||+|++ .|++|++ +++..+ +.+...++.+|.....++.+..-+.+
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi---~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMI---EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhccc---CCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 348899999999999999999999999999 9999995 444333 22334445666554444444433333
Q ss_pred HHHHHhc-CCCCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 148 KEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 148 ~~~~~~~-g~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
+...+.. .+......+++.+.+..++. ..+.++..||-||||||++|||++.+|+|+|.||....||-..+.++..
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~N 190 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHH
Confidence 3332221 11222223344445555543 4568899999999999999999999999999999999999999999888
Q ss_pred HHH
Q 026996 224 MFD 226 (229)
Q Consensus 224 ll~ 226 (229)
++-
T Consensus 191 L~L 193 (267)
T COG4167 191 LML 193 (267)
T ss_pred HHH
Confidence 764
No 307
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=6.6e-25 Score=206.82 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=109.7
Q ss_pred hhhhhhhh-hcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCcE
Q 026996 63 TSLKVLCS-QRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~-~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~~ 125 (229)
+++++|+. .|++. +.+++|++++|+|+||||||||+++|+|++ |++|++ +++.+. +..+
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHHHhhe
Confidence 66777764 34443 238899999999999999999999999987 789996 444332 2245
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhhcCCCCC----CCCCccccchhh
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYA----PSFDHGVGDPVE 192 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~~~----~~lSgG~k~Rl~ 192 (229)
++ +.|+.+.+. -|..+|+.+. .+ +.+.+++.++++ .+..+.+..+ ..||||||||++
T Consensus 426 ~~-v~Q~~~LF~---~TI~eNI~~g-----~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 426 SW-VGQNPQLPH---GTLRDNVLLG-----NP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred EE-ecCCCcCCC---cCHHHHhhcC-----CC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 55 667776544 3788887643 11 223344444443 2322334433 469999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||++.+|+|+|+||||+.||....+++.+.+..
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887754
No 308
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.90 E-value=3.8e-24 Score=203.73 Aligned_cols=159 Identities=17% Similarity=0.100 Sum_probs=116.9
Q ss_pred hhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------
Q 026996 63 TSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------- 122 (229)
Q Consensus 63 ~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~-------- 122 (229)
++++++++.|++ . +.+++||+++|+|+||||||||+++|+|++ +|++|++ +++....
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD---KPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEcCcCCHHHHH
Confidence 455666666642 1 238999999999999999999999999999 8999995 4443321
Q ss_pred ----CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhh
Q 026996 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 123 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~a 196 (229)
...+++ .++..... .++..+|+.+.....+.........+.+.++.++. ..+.++..||+||+||+++|++
T Consensus 82 ~~~~~~i~~v-~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 82 QLRREHFGFI-FQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHhccEEEE-eCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 235554 34433222 25777777654433333222233455667776654 3467888999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|+++|+|||+.+||...++.+.+++.+
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~ 189 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQ 189 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 309
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=1.7e-24 Score=203.63 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=113.6
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++++|++ . +.+++|++++|+||||||||||+++|+|++ .|++|++. ++.+. +.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~---~p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW---DPQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHh
Confidence 4778888888854 2 238999999999999999999999999999 89999964 44322 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--------CCC----CCCCCCccccchh
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSV----YAPSFDHGVGDPV 191 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--------~~~----~~~~lSgG~k~Rl 191 (229)
.+++ +.++.+... -+..+|+.+. .+ +.+.+.+.+.++..+.. .+. ....||||||||+
T Consensus 415 ~i~~-v~Q~~~lf~---~ti~~Ni~~~-----~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 415 AISV-VSQRVHLFS---ATLRDNLLLA-----AP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred heeE-Ecccchhhc---ccHHHHhhcC-----CC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHH
Confidence 3555 556665433 3677776542 12 22344555555544322 122 3457999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++||+++.+|+++|+||||++||+...+.+.+.+..
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888764
No 310
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8e-24 Score=167.69 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=112.2
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC----CC---------
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ----VK--------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~----~~--------- 121 (229)
.+++.+++|.|++. +.+.+||++||+|.+||||||||+||++.+ .|+.|++.... ..
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl---~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL---TPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc---CCCCCeEEEEcCCCCchhHhhhchHH
Confidence 46778899999866 348899999999999999999999999999 99999843221 11
Q ss_pred -----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC-CCccHHHHHHHHHhhhhcC---CCCCCCCCccccchhh
Q 026996 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 192 (229)
Q Consensus 122 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~---~~~~~~lSgG~k~Rl~ 192 (229)
+-+-|. ++++...-.+...+.-.|+-......|.. ...........++.+.... +-.+.+|||||+||+.
T Consensus 83 RR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 83 RRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 112343 33333222221122223332222222210 0112334566677666543 4567899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+-++..|+++++||||-+||...+..+.+++..
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg 196 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999988754
No 311
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=4.9e-25 Score=211.87 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=113.3
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++.+|++ . +.|++|+.++|+|+||||||||+|+|+|++ .|++|++. ++.++ +.
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY---QPWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEeHHHCCHHHHHh
Confidence 4778888888864 2 238999999999999999999999999999 99999964 44322 33
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCCC----CCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG~k~R 190 (229)
.+++ +.|+.+... -+..+|+... .+ +.+.+++.++++..+ .+.+.. ...||||||||
T Consensus 554 ~i~~-v~Q~~~lf~---gTi~eNi~l~-----~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 554 SVAM-VDQDIFLFE---GTVRDNLTLW-----DP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred heeE-EecCChhhh---ccHHHHhhCC-----CC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 4666 566665443 3677776532 11 233444444444322 222333 34699999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+...+++.+.+..
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887753
No 312
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=3.5e-24 Score=184.42 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=97.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.|++||+++|+|+||||||||+++|+|++ . ++|++..++ .+ ...++++ .++..... .++.+|
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~---~-~~G~I~i~g~~i~~~~~~~lr~~i~~v-~q~~~lf~---~tv~~n 96 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL---N-TEGDIQIDGVSWNSVPLQKWRKAFGVI-PQKVFIFS---GTFRKN 96 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhc---C-CCcEEEECCEEhhhCCHHHHhhhEEEE-CCCcccch---hhHHHH
Confidence 349999999999999999999999999998 5 789964433 22 1235553 34433222 256666
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCC-----------CCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYA-----------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~-----------~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+... + ....+.+.+.++.++.. .+..+ ..||+||+||+++|+|++.+|+|+|+||||++|
T Consensus 97 l~~~----~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~L 169 (275)
T cd03289 97 LDPY----G---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 169 (275)
T ss_pred hhhc----c---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 5321 1 12234455555544432 22223 349999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 026996 214 DGGVWKDVSSMFDE 227 (229)
Q Consensus 214 D~~~~~~~~~ll~~ 227 (229)
|......+.+.+..
T Consensus 170 D~~~~~~l~~~l~~ 183 (275)
T cd03289 170 DPITYQVIRKTLKQ 183 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888764
No 313
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.90 E-value=3.4e-24 Score=204.34 Aligned_cols=157 Identities=11% Similarity=-0.004 Sum_probs=112.8
Q ss_pred chhhhhhhhhcC-Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 62 KTSLKVLCSQRR-EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
.++++++++.|. +. +.+++||+++|+||||||||||+|+|+|++ .|++|++..+. ....++ +.++.
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~---~~~~G~i~~~~--~~~i~~-v~Q~~ 524 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW---PVYGGRLTKPA--KGKLFY-VPQRP 524 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEeecC--CCcEEE-ECCCC
Confidence 467888888874 32 238899999999999999999999999999 89999864432 334566 44555
Q ss_pred ccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhhhc--CCC---------CCCCCCccccchhhhhhhhhcCC
Q 026996 134 FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~--~~~---------~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
+... .++.+++.+.....+. ......+.+.++++.++.. .+. ....||||||||+++||+++.+|
T Consensus 525 ~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 525 YMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 4332 2677776543211111 1112334555666655432 111 23689999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++||+...+++.+.+.+
T Consensus 602 ~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999888764
No 314
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.90 E-value=5.5e-24 Score=199.77 Aligned_cols=154 Identities=15% Similarity=0.057 Sum_probs=112.9
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~ 123 (229)
.+++++|+.+|++ . +.+++|++++|+|+||||||||+++|+|++ .|++|++..++ .. ..
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~---~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY---EPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEeHHhcCHHHHHh
Confidence 4677888888854 2 238899999999999999999999999999 99999964443 22 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCCCC----CCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG~k~R 190 (229)
..++ +.++.+.+. -+..+|+.+. .+.+.+.+++.++++..+ .+.+..+ ..||||||||
T Consensus 407 ~i~~-v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQR 477 (571)
T TIGR02203 407 QVAL-VSQDVVLFN---DTIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQR 477 (571)
T ss_pred hceE-EccCccccc---ccHHHHHhcC-----CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 3455 566666443 3677776532 111334445555544332 2333333 3699999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++||+++.+|+++|+||||+.||+...+++.+.+..
T Consensus 478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887754
No 315
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.90 E-value=8.2e-25 Score=203.83 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=112.4
Q ss_pred chhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++|+++|++. +.+++|++++|+|+||||||||+|+|+|++ .|++|++. ++.+. ..
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEehhhCCHHHHHh
Confidence 46778888888652 238899999999999999999999999999 99999964 44332 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCC----CCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~k~R 190 (229)
..++ +.++.+... -+..+|+.+.. + ....+++.+.++..+ .+.+. ....||||||||
T Consensus 397 ~i~~-v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 397 QIAW-VPQHPFLFA---GTIAENIRLAR-----P-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred heEE-EcCCCcccC---cCHHHHHhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 4566 566665443 37777765421 1 112334444444322 22232 345799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++||+++.+|+++|+||||++||+...+++.+.+..
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888764
No 316
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.90 E-value=6.6e-25 Score=210.92 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=112.4
Q ss_pred chhhhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 62 KTSLKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
.+++++|+++|++ . +.|++|+.+||+|+||||||||+++|+|++ .|++|++. ++.++ +..
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF---QARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC---CCCCcEEEECCEEHHHcCHHHHHHh
Confidence 4677888888863 2 238999999999999999999999999999 99999964 44322 234
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcCCCC----CCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~lSgG~k~Rl 191 (229)
+++ +.++.+... -|..+|+.+.. ....+.+++.++++. +..+.+.. ...||||||||+
T Consensus 550 i~~-v~Q~~~lf~---gTI~eNi~l~~-----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 550 INY-LPQEPYIFS---GSILENLLLGA-----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred eEE-EecCceehh---HHHHHHHhccC-----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 666 566666443 36777765421 112233344444332 22223333 347999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||++.+|+++|+||||+.||+...+++.+.+..
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887753
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=8.7e-24 Score=182.56 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=100.8
Q ss_pred ccccchhhhhhhhh----cCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 58 LVQNKTSLKVLCSQ----RREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 58 ~~~~~~~~~~l~~~----~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
+....++++++++. +.+. +.|++|++++|+|+||||||||+++|+|++ +|++|++..++ .++++ .++
T Consensus 35 ~~~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~---~p~~G~I~i~g----~i~yv-~q~ 106 (282)
T cd03291 35 SDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL---EPSEGKIKHSG----RISFS-SQF 106 (282)
T ss_pred CCCCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECC----EEEEE-eCc
Confidence 34445666666553 2222 348999999999999999999999999999 89999965443 35653 344
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhh----cCCCCCCCCCccccchhhhhhhhhc
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRN----QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~----~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
.+... .++.+++.+... . ........++ .+.. .....+..||+||+||+++|++++.
T Consensus 107 ~~l~~---~tv~enl~~~~~-----~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 107 SWIMP---GTIKENIIFGVS-----Y--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred ccccc---cCHHHHhhcccc-----c--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 33221 256665542110 0 0111111111 1111 1123456999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
+|+++|+|||+++||+..+..+.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHH
Confidence 9999999999999999998888764
No 318
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=184.81 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=120.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC----------CcEEEEeecCCccccCccCChh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----------PDVATVLPMDGFHLYLSQLDAM 144 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~----------~~~g~~i~~~~~~~~~~~l~~~ 144 (229)
+.+++|+.+||+|.+|||||||-+.|.+++ +..|++ |.+..+. ...-.++++|.|-..++.+++.
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~ 383 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG 383 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHH
Confidence 458999999999999999999999999998 455994 6665441 1234557788888777778888
Q ss_pred hhHHHHHHhcC--CCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 145 EDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 145 ~~~~~~~~~~g--~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
+.+........ ....+....+.+.++.++.+ .+.++++|||||+||++||||++.+|+++++||||+.||...+.
T Consensus 384 qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQa 463 (534)
T COG4172 384 QIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463 (534)
T ss_pred HHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHH
Confidence 88777766544 23344455677788877764 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
++.+++..
T Consensus 464 Qvv~LLr~ 471 (534)
T COG4172 464 QVLDLLRD 471 (534)
T ss_pred HHHHHHHH
Confidence 99999864
No 319
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=3.5e-24 Score=202.07 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=111.6
Q ss_pred hhhhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCcE
Q 026996 63 TSLKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~~ 125 (229)
+++++++.+|++ . +.+++|++++|+|+||||||||+++|+|++ .|++|++ +++.+. ...+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~---~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY---PLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCceEEECCEEhhhCCHHHHHhhe
Confidence 566777777753 2 338999999999999999999999999999 9999996 444332 2345
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCCC----CCCCCccccchhh
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVE 192 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG~k~Rl~ 192 (229)
++ +.|+.+.+. -|..+|+.+.. ..+.+++.++++..+ .+.+.. ...|||||+||++
T Consensus 418 ~~-v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 418 AM-VQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred EE-EccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 55 567766544 36778776531 123344444444332 223333 3469999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|||++.+|+++|+||||+.||+...+++.+.+..
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887754
No 320
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.90 E-value=1.2e-24 Score=208.67 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=112.5
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~~ 123 (229)
.+++++++++|++ . +.|++|+.++|+|+||||||||+|+|+|++ .|++|++..++ +. +.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY---QPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHh
Confidence 4678888888853 2 238999999999999999999999999999 99999964432 22 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---------hhcCCCC----CCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVY----APSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---------~~~~~~~----~~~lSgG~k~R 190 (229)
.+++ +.++.+.+. -+..+|+.+. .+ +.+.+++.++++.. ..+.+.. ...||||||||
T Consensus 540 ~i~~-v~Q~~~lf~---~TI~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 540 NIGY-VPQDPRLFY---GTLRDNIALG-----AP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred ccEE-ECCChhhhh---hhHHHHHhCC-----CC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 4555 566665443 3677776532 11 12334444444432 2222332 34799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+...+++.+.+..
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888764
No 321
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-24 Score=195.29 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=115.7
Q ss_pred ccchhhhhhhhhcCCcc-c-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------C
Q 026996 60 QNKTSLKVLCSQRREIP-V-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------P 122 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~-~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~ 122 (229)
...+++++|..+|+++. + |++||.+||+|+|||||||++|+|.+++ . ++|++ ++|.++ +
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~---d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF---D-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh---c-cCCcEEECCeeHhhhChHHhh
Confidence 44488999999998874 3 8899999999999999999999999999 6 99995 555444 3
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcC----CCCCCCCCccccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQG----SVYAPSFDHGVGD 189 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~----~~~~~~lSgG~k~ 189 (229)
..+|+ ++||...+++ |+..|+.+ |.+... .+++.++.++ +..+- .-+...|||||||
T Consensus 425 ~~Ig~-VPQd~~LFnd---TIl~NI~Y-----Gn~sas-~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQ 494 (591)
T KOG0057|consen 425 QSIGV-VPQDSVLFND---TILYNIKY-----GNPSAS-DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQ 494 (591)
T ss_pred hheeE-eCCcccccch---hHHHHhhc-----CCCCcC-HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHH
Confidence 44666 6777765443 66666553 433322 2344444443 32221 2234579999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||+++++|+|+++||+|+.||.+...++.+.+-.
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999888887643
No 322
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.90 E-value=1.2e-24 Score=204.29 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=113.8
Q ss_pred hhhhhhhhhcCC-cc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcE
Q 026996 63 TSLKVLCSQRRE-IP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~~~-~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~ 125 (229)
+++++++.+|++ .. .+++||++||+||||||||||+++|++++ .|++|++. +|.++ +..+
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~---~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY---DPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCeEEECCEehhhcCHHHHHHhc
Confidence 788999999983 32 38899999999999999999999999999 89999954 34333 3456
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHH---------HHhhhhcCCCCCC----CCCccccchhh
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYAP----SFDHGVGDPVE 192 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~~~~~~~~~----~lSgG~k~Rl~ 192 (229)
+. +.|+.+... -|+.+|+.+.. +. ...+++.+. ++++..+.+..+. .||||||||++
T Consensus 406 ~~-V~Qd~~LF~---~TI~~NI~~g~-----~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 406 GI-VSQDPLLFS---GTIRENIALGR-----PD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cE-Ecccceeec---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 64 667776544 37778776532 21 112233222 3334333454444 79999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+|||++.+|+|+||||+|+.+|......+.+.+.
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 9999999999999999999999999988888775
No 323
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.90 E-value=2.5e-24 Score=206.96 Aligned_cols=149 Identities=16% Similarity=0.109 Sum_probs=109.7
Q ss_pred chhhhhhhhhcCCc----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------C
Q 026996 62 KTSLKVLCSQRREI----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~ 122 (229)
.+++++|+.+|++. +.+++||+++|+||||||||||+++|+|++ .|++|++. ++.++ .
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~---~p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY---QPTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCEEEECCEEHHhcCHHHHH
Confidence 46778888888532 238999999999999999999999999999 99999964 44332 2
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---------hhcCCCC----CCCCCccccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVY----APSFDHGVGD 189 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---------~~~~~~~----~~~lSgG~k~ 189 (229)
..+++ +.|+.+... -+..+|+.+. .+ ..+.+++.++++.. ..+.+.. ...|||||||
T Consensus 555 ~~i~~-v~Q~~~lF~---gTIreNI~~g-----~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 555 RQVAL-VGQEPVLFS---GSVRENIAYG-----LT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred hhceE-EecCccccc---cCHHHHHhcC-----CC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 34555 567766544 3777876542 22 12234444444432 2223333 3479999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
|+++|||++.+|+|+|+||||+.||+....++.+
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 9999999999999999999999999998888876
No 324
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.90 E-value=2.1e-24 Score=203.52 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=111.0
Q ss_pred chhhhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCc
Q 026996 62 KTSLKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~ 124 (229)
.+++++++.+|++ . +.+++|++++|+|+||||||||+|+|+|++ .|++|++ +++... ...
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~---~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4677888888854 2 238899999999999999999999999999 8999996 444322 234
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcCCCC----CCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~lSgG~k~Rl 191 (229)
+++ +.++.+... -+..+|+.+. .+ +.+.+++...++. +..+.+.. ...|||||+||+
T Consensus 411 i~~-v~Q~~~lf~---~Ti~~Ni~~~-----~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 411 IAV-VFQDAGLFN---RSIEDNIRVG-----RP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred eEE-EecCccccc---ccHHHHHhcC-----CC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 555 566665443 3677776542 11 1223333333332 22222322 346999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++||+++.+|+++|+||||+.||+...+.+.+.+..
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887654
No 325
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.89 E-value=7.3e-24 Score=198.33 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=105.3
Q ss_pred chhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 62 KTSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
.+++++++++|++. +.+++|++++|+|+||||||||+++|+|++ .|++|++. ++... ...
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY---QPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCCCCHHHHhhh
Confidence 46788888888542 238899999999999999999999999999 89999963 43322 223
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCC-------CCCCCCccccchhhhhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~-------~~~~lSgG~k~Rl~~a~al 197 (229)
.++ +.++.+.... +..+| + ...+.+.+.+.++.++..... ....|||||+||+++||++
T Consensus 399 i~~-v~q~~~lf~~---ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 399 FSA-VFTDFHLFDQ---LLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred eEE-EecChhHHHH---hhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 444 4455432221 22222 1 122334455556655433221 1348999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.+|+++|+||||++||+...+++.+.+.
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999888877654
No 326
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=2.9e-24 Score=200.91 Aligned_cols=153 Identities=18% Similarity=0.126 Sum_probs=109.0
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++++|++ . +.+++|++++|+|+||||||||+++|+|++ .|++|++. ++... ..
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEehhhCCHHHHhh
Confidence 4677778888843 2 238899999999999999999999999999 89999964 33322 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHH---------HHhhhhcCC----CCCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGS----VYAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~~~~~----~~~~~lSgG~k~R 190 (229)
..++ +.++.+... -+..+|+.... + ....+++.+. ++.+..+.+ .....|||||+||
T Consensus 393 ~i~~-v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qr 462 (544)
T TIGR01842 393 HIGY-LPQDVELFP---GTVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462 (544)
T ss_pred heEE-ecCCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHH
Confidence 3555 455554433 26677764211 1 1222333222 333322222 3456899999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||....+++.+.+..
T Consensus 463 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 499 (544)
T TIGR01842 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA 499 (544)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887754
No 327
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.89 E-value=6.9e-24 Score=199.93 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=109.9
Q ss_pred chhhhhhhhhcCC-c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 62 KTSLKVLCSQRRE-I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~-~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
.+++++++++|++ . +.+++|++++|+||||||||||+++|+|++ .|++|++. ++... ...
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY---DPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC---CCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4677888888864 2 238899999999999999999999999999 99999964 33222 223
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhhcC----CCCCCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQG----SVYAPSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~----~~~~~~lSgG~k~Rl 191 (229)
.++ +.++.+... .+..+|+.+. .+. ...+++.+.++ .+..+. ......||||||||+
T Consensus 411 i~~-v~q~~~lf~---~ti~~Ni~~~-----~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 411 IAT-VFQDAGLFN---RSIRENIRLG-----REG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred eEE-EccCCccCc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 455 556655433 3677776532 111 12222322222 221111 234567999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++||+++.+|+++|+||||++||+...+++.+.+..
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888764
No 328
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-23 Score=192.36 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=110.7
Q ss_pred hhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CCC--------CcEEE
Q 026996 65 LKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKP--------PDVAT 127 (229)
Q Consensus 65 ~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~~--------~~~g~ 127 (229)
.++++.+|++- +.+++|+.++|+|+||||||||+++|+|++ +|++|++..++ +.. .....
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~---~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL---APTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC---CCCCceEEECCccccccCHHHHHhHeee
Confidence 45777777653 348999999999999999999999999999 89999965443 221 22343
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--------cCCCCCCC----CCccccchhhhhh
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAPS----FDHGVGDPVEDDI 195 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--------~~~~~~~~----lSgG~k~Rl~~a~ 195 (229)
+.++++... -+..+|+.... +. ...+.+.++++..+. +.+..+.+ |||||+||+++||
T Consensus 400 -v~Q~p~lf~---gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 400 -VSQNPYLFA---GTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred -eCCCCcccc---ccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 666766544 36777765421 21 234555555553332 33444554 9999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+..+++++|+||||+.||.+....+.+.+.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~ 501 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQE 501 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence 99999999999999999999998888877654
No 329
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=6.2e-23 Score=165.65 Aligned_cols=114 Identities=15% Similarity=0.039 Sum_probs=82.3
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++|++++|+||||||||||||+|.+ ++|++... +.. +.... ....
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~--------------~~~------~~~~~-----~~~~ 63 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLI--------------SFL------PKFSR-----NKLI 63 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEEC--------------Ccc------ccccc-----ccEE
Confidence 4599999999999999999999999842 35542211 110 00000 0000
Q ss_pred CCCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhhhhhhcC--CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a~al~~~--~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+..+ .+.++.++. ..+.++..||+||+||+++|++++.+ |+++|+|||+++||+...+.+.+++.+
T Consensus 64 ~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 64 FIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred EEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0000 345555554 24678899999999999999999999 999999999999999999999888764
No 330
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=1.3e-23 Score=196.91 Aligned_cols=147 Identities=15% Similarity=0.000 Sum_probs=103.7
Q ss_pred chhhhhhhhhcCCc------------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC------
Q 026996 62 KTSLKVLCSQRREI------------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP------ 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~------------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~------ 122 (229)
.+++++|+++|++. +.+++|++++|+||||||||||+++|+|++ .|++|++. ++..+.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~---~p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY---IPQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHH
Confidence 46788888888642 238899999999999999999999999999 99999964 333221
Q ss_pred --CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCC--------CCCCCCCccccchhh
Q 026996 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVE 192 (229)
Q Consensus 123 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~--------~~~~~lSgG~k~Rl~ 192 (229)
...++ +.++.+.... +..+|. ......+.+.+.++.++.... .....||||||||++
T Consensus 414 ~~~~i~~-v~q~~~lf~~---ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla 480 (555)
T TIGR01194 414 YRDLFSA-IFADFHLFDD---LIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA 480 (555)
T ss_pred HHhhCcE-EccChhhhhh---hhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence 22344 3444432221 222221 111233445556665443221 113579999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
+||+++.+|+++|+||||++||+...+++.+.
T Consensus 481 laRall~~~~ililDE~ts~LD~~~~~~i~~~ 512 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAADQDPAFKRFFYEE 512 (555)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 99999999999999999999999999888663
No 331
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=3.5e-23 Score=194.59 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=107.5
Q ss_pred hhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 63 TSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 63 ~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
+++++++.+|++ . +.+++|++++|+||||||||||+++|+|++ .|++|++. ++... ...
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF---DVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEHhhCCHHHHHhh
Confidence 556666666643 1 238999999999999999999999999999 99999964 33322 223
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCC----CCCCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG~k~Rl 191 (229)
.++ +.++.+... -+..+|+.+. .+ ....+.+...++..+ .+.+ .....|||||+||+
T Consensus 391 i~~-v~q~~~lf~---~ti~~Ni~~~-----~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 391 LAV-VSQTPFLFS---DTVANNIALG-----RP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460 (569)
T ss_pred eEE-EccCCeecc---ccHHHHHhcC-----CC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 455 455554333 3677776432 11 122333333333221 1222 23457999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++||+++.+|+++|+||||++||+...+++.+.+..
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888764
No 332
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.89 E-value=1e-23 Score=198.18 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=109.5
Q ss_pred chhhhhhhhhcCC---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC--------C
Q 026996 62 KTSLKVLCSQRRE---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~--------~ 122 (229)
.+++++++.+|++ . +.+++||+++|+|+||||||||+|+|+|++ .|++|++..++ .+ .
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~---~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY---DPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCEEEECCEEHHhcCHHHHH
Confidence 3567777777742 1 348999999999999999999999999999 89999964332 22 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCC----CCCCCCccccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 189 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~k~ 189 (229)
...++ +.++.+... -+..+|+.+. .+. .+.+++.+.++..+ .+.+. ....|||||+|
T Consensus 414 ~~i~~-~~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 414 ARMAL-VPQDPVLFA---ASVMENIRYG-----RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HhceE-EccCCcccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 24565 566665443 3677776432 221 22344444444322 22232 23469999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||++..+|+++|+||||++||+...+.+.+.+..
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877654
No 333
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.3e-23 Score=163.90 Aligned_cols=106 Identities=25% Similarity=0.287 Sum_probs=78.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+.+|++++|+|+||||||||+++|+|++ .|+.|++. .++..... .. . .......+
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~--------------~~~~~~~~--~~---~-~~~~~~i~ 76 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEIL--------------IDGKDIAK--LP---L-EELRRRIG 76 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEE--------------ECCEEccc--CC---H-HHHHhceE
Confidence 348999999999999999999999999999 67777532 22211000 00 0 00011111
Q ss_pred CCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.. +||+||+||++++++++.+|+++++|||+.+||...+..+.+++.+
T Consensus 77 ~~~-----------------------qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 77 YVP-----------------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEe-----------------------eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 111 1999999999999999999999999999999999999999888764
No 334
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.5e-23 Score=187.17 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=111.6
Q ss_pred chhhhhhhhhcCCcc---------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC---CC----c
Q 026996 62 KTSLKVLCSQRREIP---------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK---PP----D 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~---------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~---~~----~ 124 (229)
.+++++|+++|.+.. .+++||.++|+|++|||||||+++|+|.+ .|++|++. .+.++ +. +
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~---~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc---CCCCCeeeECCcChhhCChhhHHH
Confidence 788999999998763 28899999999999999999999999999 89999964 33322 11 0
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh---------cCCCC----CCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~lSgG~k~Rl 191 (229)
...++.|..+.+. -+..+|+.. ..+. ...+++.++++.++. +.+.+ ...|||||+||+
T Consensus 413 ~i~vl~Qr~hlF~---~Tlr~NL~l-----A~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 413 TISVLTQRVHLFS---GTLRDNLRL-----ANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred HHhhhccchHHHH---HHHHHHHhh-----cCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 1122333332221 134444332 2222 234555566664442 22223 347999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
++||++..+++++|+||||.+||+...+++.+++.+.
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 335
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=4.1e-23 Score=198.19 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=110.7
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++.+|++ . +.+++|+.++|+|+||||||||+|+|+|++ .|++|++. ++.++ +.
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~---~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY---TPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEehhhCCHHHHHH
Confidence 4677788888842 2 238999999999999999999999999999 99999964 44332 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcCCC----CCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSV----YAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~----~~~~lSgG~k~R 190 (229)
.+++ +.++.+... -+..+|+... .+ ....+.+.+.++. +..+.+. ....|||||+||
T Consensus 532 ~i~~-v~q~~~lf~---~ti~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 532 QMGV-VLQENVLFS---RSIRDNIALC-----NP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred hCeE-EccCCeehh---hhHHHHHhcC-----CC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 3555 456655433 3677776431 11 1223344443332 2222232 345799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+...+++.+.+..
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888764
No 336
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.88 E-value=8.1e-24 Score=163.15 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=81.8
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+++|++++|+|+||||||||+++|+|.+ .|++|++. ++... ....++ +.++..... .+++.++
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~tv~~~- 79 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLL---PPDSGSILINGKDISDIDIEELRRRIGY-VPQDPQLFP--GLTVREN- 79 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSS---HESEEEEEETTEEGTTSHHHHHHHTEEE-EESSHCHHT--TSBHHHH-
T ss_pred EEcCCCEEEEEccCCCccccceeeecccc---cccccccccccccccccccccccccccc-ccccccccc--ccccccc-
Confidence 48999999999999999999999999999 78999853 33222 123444 333322111 1334433
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhhhcC--CC----CCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQG--SV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~----~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
.....+..+++.+.... +. +...||+||+||+++|++++.+|+++|+||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12334555666555422 33 448999999999999999999999999999986
No 337
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=8.1e-23 Score=207.71 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=116.3
Q ss_pred cchhhhhhhhhcC----Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----CCc
Q 026996 61 NKTSLKVLCSQRR----EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----PPD 124 (229)
Q Consensus 61 ~~~~~~~l~~~~~----~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----~~~ 124 (229)
..+++++|++.|+ ++ ..+++|+++||+||||||||||+++|+|+...-.|++|++. ++... ...
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3456677777663 22 23889999999999999999999999999811117889964 44322 234
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcC---CCCCccHHHHHHHHHhhhhc--CCCCCC----CCCccccchhhhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDI 195 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g---~~~~~~~~~~~~~l~~l~~~--~~~~~~----~lSgG~k~Rl~~a~ 195 (229)
.+++. +++... ..+++.|++.+...... .......+.+.++++.++.. .+..+. .||||||||+++|+
T Consensus 838 i~yv~-Q~~~~~--~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 838 IGYVQ-QQDLHL--PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eeeec-ccccCC--CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 56644 443322 23789999887654331 11111223456677766543 455555 79999999999999
Q ss_pred hhhcCCc-EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~-illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+|+ +|++||||++||......+.+++..
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999997 9999999999999999999998865
No 338
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=5.7e-23 Score=200.63 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=118.5
Q ss_pred ccchhhhhhhhhcCCccc----------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------
Q 026996 60 QNKTSLKVLCSQRREIPV----------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~----------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------- 121 (229)
.-.+++++|.++|..++. +++|+.+|||||+||||||.+.+|-..| .|+.|.+ +++.++
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY---dp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY---DPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc---CCCCCeEEECCcccccCCHHH
Confidence 334788888999877642 8899999999999999999999999999 8999995 555544
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHH---------HHHhhhhcCCCCCC----CCCccc
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQGSVYAP----SFDHGV 187 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~~~~~~~~~----~lSgG~ 187 (229)
+...+. +.|.+..+. -|..||+.+.. .. ...+++.+ .+..|..+.+.++. +|||||
T Consensus 1062 LR~~i~l-VsQEP~LF~---~TIrENI~YG~--~~----vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQ 1131 (1228)
T KOG0055|consen 1062 LRKQIGL-VSQEPVLFN---GTIRENIAYGS--EE----VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQ 1131 (1228)
T ss_pred HHHhcce-eccCchhhc---ccHHHHHhccC--CC----CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchH
Confidence 234454 566655433 47889887751 11 22333333 33344455565555 899999
Q ss_pred cchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||++||||++.+|+||||||.|++||.+..+.+.+.||.
T Consensus 1132 KQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1132 KQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred HHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999888875
No 339
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.88 E-value=1.4e-22 Score=192.07 Aligned_cols=145 Identities=17% Similarity=0.094 Sum_probs=107.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccccc-CCCCC-----CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSF-DSQVK-----PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~---~G~~~-~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
..+++||+++|+|||||||||||++|+|.. .|. +|++. ++... ....+++. +++... +.+++.|+
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~---~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~-Q~~~~~--~~lTV~e~ 119 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRS---PKGVKGSGSVLLNGMPIDAKEMRAISAYVQ-QDDLFI--PTLTVREH 119 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCcceeEEEECCEECCHHHHhhhceeec-cccccC--ccCcHHHH
Confidence 349999999999999999999999999987 664 78853 33322 23456644 444322 23789999
Q ss_pred HHHHHHhcCCCC----CccHHHHHHHHHhhhhc--CCCCCC------CCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 147 PKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 147 ~~~~~~~~g~~~----~~~~~~~~~~l~~l~~~--~~~~~~------~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
+.+..... .+. +.....+.++++.++.. .+..+. .||||||||+++|++++.+|+++++|||+++||
T Consensus 120 l~f~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD 198 (617)
T TIGR00955 120 LMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198 (617)
T ss_pred HHHHHhcC-CCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence 88765432 222 22233467777776643 355554 599999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 026996 215 GGVWKDVSSMFDE 227 (229)
Q Consensus 215 ~~~~~~~~~ll~~ 227 (229)
......+.+.+..
T Consensus 199 ~~~~~~l~~~L~~ 211 (617)
T TIGR00955 199 SFMAYSVVQVLKG 211 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=1.7e-23 Score=213.15 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=112.6
Q ss_pred chhhhhhhhhcCC---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---------------------
Q 026996 62 KTSLKVLCSQRRE---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--------------------- 110 (229)
Q Consensus 62 ~~~~~~l~~~~~~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p--------------------- 110 (229)
.+++++|+++|.+ . +.|++|+.+||+|+||||||||+++|.|++ .|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y---dp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY---DLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC---CCccccccccccccccccccccc
Confidence 4778889999952 2 238899999999999999999999999999 66
Q ss_pred ---------------------------------CCccc-cCCCCC--------CCcEEEEeecCCccccCccCChhhhHH
Q 026996 111 ---------------------------------QKASS-FDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 111 ---------------------------------~~G~~-~~~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
++|++ +++..+ +..+++ +.|+.+.+. -+..+|+.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~-V~Qep~LF~---gTIreNI~ 1317 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI-VSQEPMLFN---MSIYENIK 1317 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE-eCCCCcccc---ccHHHHHh
Confidence 58885 344332 234555 566666543 47888876
Q ss_pred HHHHhcCCCCCccHHHHHHHHH---------hhhhcCCCCC----CCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 149 EAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~~~----~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
+. .+. ...+++.++++ .|..+.+..+ ..||||||||++||||++.+|+||||||||+.||.
T Consensus 1318 ~g-----~~~-at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1318 FG-----KED-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred cC-----CCC-CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 53 121 22333433333 3333344444 36999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 026996 216 GVWKDVSSMFDE 227 (229)
Q Consensus 216 ~~~~~~~~ll~~ 227 (229)
...+.+.+.++.
T Consensus 1392 ~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1392 NSEKLIEKTIVD 1403 (1466)
T ss_pred HHHHHHHHHHHH
Confidence 999998887764
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=7.5e-23 Score=208.46 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=113.3
Q ss_pred chhhhhhhhhcCCc----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-C-CCC--------
Q 026996 62 KTSLKVLCSQRREI----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-S-QVK-------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~-~~~-------- 121 (229)
.+++++|+++|++. +.|++|+++||+||||||||||+++|+|++ .|++|++.. + ..+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~---~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY---DPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc---cCCCCeEEEeCCcchhhCCHHHH
Confidence 47788888888742 238999999999999999999999999999 999999654 3 222
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhc-C---------C-----------------------------------
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---------A----------------------------------- 156 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g---------~----------------------------------- 156 (229)
+..+|+ +.++.+.+. .++.+|+.+..... + .
T Consensus 459 r~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 459 RSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 123565 455544332 37888877642100 0 0
Q ss_pred ------CCCccHHHHHHHHHhhh---------hcC----CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhh
Q 026996 157 ------PWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 157 ------~~~~~~~~~~~~l~~l~---------~~~----~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~ 217 (229)
......+.+.++++.++ .+. ......||||||||+++|||++.+|+||||||||++||...
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 00112233444443332 111 24466899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026996 218 WKDVSSMFDE 227 (229)
Q Consensus 218 ~~~~~~ll~~ 227 (229)
...+.+.++.
T Consensus 615 e~~i~~~L~~ 624 (1466)
T PTZ00265 615 EYLVQKTINN 624 (1466)
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 342
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=3.3e-23 Score=166.67 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=119.6
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC----------CC
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK----------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~----------~~ 123 (229)
.+.+++++.+|++.. .+.+||.-+|||||||||||++.+|+|.. .|+.|+++..+ .. +.
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt---rp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT---RPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC---CCCcceEEEcCchhhccCCHHHHHHh
Confidence 456677777887763 38899999999999999999999999998 89999954333 22 12
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcC--------CCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhh
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 193 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~ 193 (229)
-+|.-++.+..+. .+++++|++....... -.......++.++++.++. ..+.....||+||||++.|
T Consensus 82 GIGRKFQ~PtVfe---~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI 158 (249)
T COG4674 82 GIGRKFQKPTVFE---NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI 158 (249)
T ss_pred ccCccccCCeehh---hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence 2455444444322 2788898876543211 1122334467777775554 4567788999999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.++.+|++|++|||++++-.....+..+++..
T Consensus 159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred heeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999888888888764
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.1e-22 Score=165.75 Aligned_cols=148 Identities=20% Similarity=0.136 Sum_probs=110.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCCC--------cEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPP--------DVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~~--------~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
..|..|+++.|||.||||||||++.|+|-+ .|++|+++ ++..+.. .... +.||...-..+.+++.||
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l---~~t~G~I~Idg~dVtk~~~~~RA~~lar-VfQdp~~gt~~~lTieEN 102 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDL---KPTSGQILIDGVDVTKKSVAKRANLLAR-VFQDPLAGTAPELTIEEN 102 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCcc---ccCCceEEECceecccCCHHHHhhHHHH-HhcchhhCCcccccHHHH
Confidence 349999999999999999999999999999 99999964 4443311 1223 456666555666899999
Q ss_pred HHHHHHh---cCCCCCcc---HHHHHHHHHhhhh----cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh
Q 026996 147 PKEAHAR---RGAPWTFN---PLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 147 ~~~~~~~---~g~~~~~~---~~~~~~~l~~l~~----~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~ 216 (229)
+.....+ +|+..... ...+.+.+..++. ....++.-|||||||-+.+++|....|+||++||-|+.|||.
T Consensus 103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk 182 (263)
T COG1101 103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK 182 (263)
T ss_pred HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence 8766543 23322112 2223444443333 356788899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 026996 217 VWKDVSSMFDE 227 (229)
Q Consensus 217 ~~~~~~~ll~~ 227 (229)
..+.++++-++
T Consensus 183 ta~~vm~lT~k 193 (263)
T COG1101 183 TAEFVMELTAK 193 (263)
T ss_pred hHHHHHHHHHH
Confidence 88888876544
No 344
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=2.3e-22 Score=181.79 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=118.4
Q ss_pred ccccccchhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEE
Q 026996 56 RSLVQNKTSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (229)
Q Consensus 56 ~~~~~~~~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~ 127 (229)
+..+..++.+.++.+.|.+. +-|..++++++|||||||||||||+++|.+ .|..|.+.... ..
T Consensus 383 g~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl---~p~~G~vs~~~------H~ 453 (614)
T KOG0927|consen 383 GKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL---QPTIGMVSRHS------HN 453 (614)
T ss_pred cCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc---ccccccccccc------cc
Confidence 55677888999999999877 448899999999999999999999999999 89999753221 11
Q ss_pred EeecCCccccCcc-CChh-hhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 128 VLPMDGFHLYLSQ-LDAM-EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 128 ~i~~~~~~~~~~~-l~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
.+..|.+.... ++.. .-+.+.... ++.....+.+..++..+++. ...++.+||.|||.||.+|+.++..|.
T Consensus 454 --~~~~y~Qh~~e~ldl~~s~le~~~~~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 454 --KLPRYNQHLAEQLDLDKSSLEFMMPK--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred --cchhhhhhhHhhcCcchhHHHHHHHh--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence 11122221111 1100 111222222 22245567788888888765 457888999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|||||++||.+....+.+.+++
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhc
Confidence 9999999999999999999888875
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=4.5e-22 Score=190.80 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=102.7
Q ss_pred cccchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCCCcEEEEee
Q 026996 59 VQNKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLP 130 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~~~~g~~i~ 130 (229)
....+.+++++++|++..+ |.+|+++||||+||||||||||+|+|..-.-.|+.|++. ..+... |
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~---g---- 246 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV---G---- 246 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC---C----
Confidence 4556889999999987633 889999999999999999999999996410046666531 111100 0
Q ss_pred cCCccccCccCChhh---------------hH-----------------------------------HHHHHhcCCCCC-
Q 026996 131 MDGFHLYLSQLDAME---------------DP-----------------------------------KEAHARRGAPWT- 159 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~---------------~~-----------------------------------~~~~~~~g~~~~- 159 (229)
...+..+ .. .......+....
T Consensus 247 --------~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 318 (718)
T PLN03073 247 --------DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAY 318 (718)
T ss_pred --------CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcc
Confidence 0001000 00 000000111000
Q ss_pred ccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 160 FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 160 ~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....++..++..+++. .+.++.+|||||+||+++|++++.+|++|||||||++||+.....+.+++..
T Consensus 319 ~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred hHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1122344455555543 3577899999999999999999999999999999999999999999988864
No 346
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=4.3e-22 Score=195.07 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=129.8
Q ss_pred cccchhhhhhhhhcCCcc--------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------
Q 026996 59 VQNKTSLKVLCSQRREIP--------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-------- 121 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~--------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-------- 121 (229)
....+.+.+++|.|+... .|++||+.|+.|+|||||||++|||+|.. +|++|+++. +...
T Consensus 561 ~~~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~---~~t~G~a~i~g~~i~~~~~~~~ 637 (885)
T KOG0059|consen 561 YSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET---KPTSGEALIKGHDITVSTDFQQ 637 (885)
T ss_pred ccceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc---cCCcceEEEecCccccccchhh
Confidence 345566777888886653 38999999999999999999999999999 999999543 3332
Q ss_pred -CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh
Q 026996 122 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 122 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
....|+- +|.+- ..+.+|..|.+....+.+|++...-...+...++.++. ..+++++.||||+|+|+.+|.|++
T Consensus 638 ~~~~iGyC-PQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 638 VRKQLGYC-PQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hhhhcccC-Cchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 2225553 33332 22338999999999999998765555556777775554 567889999999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+|+++++|||+.++||..++.+.+++.+
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=3.4e-22 Score=154.92 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=107.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEeecCCccccCccCChhhhHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 149 (229)
.|.+||++.|+||+|||||||+..+.|.+....--.|++. +++.+ ...+|. +.+|...+.+ +++.+|+.+
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi-LFQD~lLFph--lsVg~Nl~f 100 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI-LFQDALLFPH--LSVGQNLLF 100 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee-eecccccccc--cccccceEE
Confidence 4889999999999999999999999999832223367753 33322 345666 5566654443 677777654
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 150 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.... .+............++..+.. .+..+.++|||||.|+++-|+++..|+.+++||||+-||...+.+.++++..
T Consensus 101 Alp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs 179 (213)
T COG4136 101 ALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179 (213)
T ss_pred ecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence 3211 111122233456677766653 3567789999999999999999999999999999999999999999998754
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=2.1e-21 Score=197.43 Aligned_cols=149 Identities=13% Similarity=0.028 Sum_probs=105.3
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhc-ccCCCCccccCCC-CC-------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN-KIWPQKASSFDSQ-VK-------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~-~~~p~~G~~~~~~-~~-------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
..+++||+++|+||||||||||||+|+|+.. ...|++|++..++ .. +...+++. +++... +.+++.|+
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~-Q~d~~~--~~lTV~E~ 158 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNA-ETDVHF--PHLTVGET 158 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEec-cccccC--CCCCHHHH
Confidence 3489999999999999999999999999862 1247899964432 21 22356643 443322 23789999
Q ss_pred HHHHHHhcCC---CCCcc----HHH-HHHHHHhhhhcC--C-----CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 147 PKEAHARRGA---PWTFN----PLL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 147 ~~~~~~~~g~---~~~~~----~~~-~~~~l~~l~~~~--~-----~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
+.+......- ..... .+. ...+++.++... + ..++.|||||||||.+|++++.+|+++++||||+
T Consensus 159 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTs 238 (1394)
T TIGR00956 159 LDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATR 238 (1394)
T ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCC
Confidence 8876543210 00111 112 234566555432 2 3457899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh
Q 026996 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 ~LD~~~~~~~~~ll~~ 227 (229)
+||.....++.+++..
T Consensus 239 gLD~~~~~~i~~~L~~ 254 (1394)
T TIGR00956 239 GLDSATALEFIRALKT 254 (1394)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988865
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=1.8e-21 Score=198.05 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=105.5
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCcccc-CCCCC-----CCcEEEEeecCCccccCccCChhhhHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSF-DSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~~-~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
.+++|++++|+|||||||||||++|+|.. . +.+|++. ++... ....|++.+ ++... +.+++.|++.
T Consensus 902 ~i~~Gel~aL~G~sGaGKTTLL~~LaG~~---~~g~~~G~I~inG~~~~~~~~~~~igyv~Q-~d~~~--~~lTV~E~L~ 975 (1470)
T PLN03140 902 AFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIRISGFPKKQETFARISGYCEQ-NDIHS--PQVTVRESLI 975 (1470)
T ss_pred EEECCeEEEEECCCCCCHHHHHHHHcCCC---CCCcccceEEECCccCChHHhhhheEEEcc-ccccC--CCCcHHHHHH
Confidence 38899999999999999999999999986 4 4688853 33322 223566444 43322 2378999987
Q ss_pred HHHHhcCCCCC----ccHHHHHHHHHhhhhc--CCCCC-----CCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhh
Q 026996 149 EAHARRGAPWT----FNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 149 ~~~~~~g~~~~----~~~~~~~~~l~~l~~~--~~~~~-----~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~ 217 (229)
+..... .+.. .....+.++++.++.. .+..+ ..||||||||+.||++|+.+|+++++||||++||...
T Consensus 976 ~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 976 YSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 654322 2221 1122356677766543 34443 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026996 218 WKDVSSMFDE 227 (229)
Q Consensus 218 ~~~~~~ll~~ 227 (229)
...+.+++..
T Consensus 1055 a~~v~~~L~~ 1064 (1470)
T PLN03140 1055 AAIVMRTVRN 1064 (1470)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=99.85 E-value=4.1e-22 Score=204.02 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=113.4
Q ss_pred chhhhhhhhhcCCc--c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI--P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++|+.+|++. + .|++||++||+|++|||||||+++|.|++ .|++|++ ++|.++ +.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~---~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV---ELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---cCCCceEEECCEEhhhCCHHHHHh
Confidence 47889999999532 2 38899999999999999999999999999 8999996 444333 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---------hhcCCCC----CCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVY----APSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---------~~~~~~~----~~~lSgG~k~R 190 (229)
.++. ++|+.+... -|..+|+... .....+++.++++.. ..+.+.. ...||||||||
T Consensus 1311 ~i~i-VpQdp~LF~---gTIr~NL~~~-------~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1379 (1495)
T PLN03232 1311 VLSI-IPQSPVLFS---GTVRFNIDPF-------SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL 1379 (1495)
T ss_pred hcEE-ECCCCeeeC---ccHHHHcCCC-------CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH
Confidence 3455 677776544 2677776432 122334444444422 2233333 34799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+|||+||+|+.+|....+.+.+.+.+
T Consensus 1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887764
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=6.4e-22 Score=203.27 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=114.4
Q ss_pred chhhhhhhhhcCCc--c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI--P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++|+.+|.+. . .|++||++||+|++|||||||+++|.|++ .|++|++ ++|.++ +.
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~---~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV---ELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC---CCCCceEEECCEecccCCHHHHHh
Confidence 47888999999642 2 38999999999999999999999999999 8999996 444333 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcCCCCC----CCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~~----~~lSgG~k~R 190 (229)
.++. +.|+.+.+. -|+.+|+.... ....+++.++++. +..+.+..+ ..||||||||
T Consensus 1314 ~Isi-VpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQr 1382 (1622)
T PLN03130 1314 VLGI-IPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQL 1382 (1622)
T ss_pred ccEE-ECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHH
Confidence 4555 677776544 26777765321 2233444444442 223334433 3799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+||||||+|+.+|....+.+.+.+.+
T Consensus 1383 laLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1383 LSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887764
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=3.8e-21 Score=195.63 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=106.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccccc-CCCCC-----CCcEEEEeecCCccccCccCChhhhH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSF-DSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~---~G~~~-~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
.+++|++++|+||||||||||||+|+|.+ .|+ +|++. ++... ....+++ .+++.+. +.+++.|++
T Consensus 187 ~i~~Ge~~~llGpnGSGKSTLLk~LaG~l---~~~~~~~G~I~~nG~~~~~~~~~~~i~yv-~Q~d~~~--~~lTV~EtL 260 (1470)
T PLN03140 187 IIKPSRMTLLLGPPSSGKTTLLLALAGKL---DPSLKVSGEITYNGYRLNEFVPRKTSAYI-SQNDVHV--GVMTVKETL 260 (1470)
T ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCCcceeEEEECCEechhhcccceeEEe-cccccCC--CcCcHHHHH
Confidence 38999999999999999999999999998 788 89964 33322 2345664 4443322 237999998
Q ss_pred HHHHHhcCCCC----------Cc---------cH---------------HHHHHHHHhhhhcC-------CCCCCCCCcc
Q 026996 148 KEAHARRGAPW----------TF---------NP---------------LLLLNCLKNLRNQG-------SVYAPSFDHG 186 (229)
Q Consensus 148 ~~~~~~~g~~~----------~~---------~~---------------~~~~~~l~~l~~~~-------~~~~~~lSgG 186 (229)
.+.....+... .. +. .....+++.++... +..++.+|||
T Consensus 261 ~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGG 340 (1470)
T PLN03140 261 DFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGG 340 (1470)
T ss_pred HHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcc
Confidence 87654332110 00 00 01234555555432 4567899999
Q ss_pred ccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||||.+|++++.+|+++++|||+++||.....++.+.+..
T Consensus 341 erkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~ 381 (1470)
T PLN03140 341 QKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381 (1470)
T ss_pred cceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.85 E-value=4.5e-21 Score=157.55 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=87.6
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc---------ccc-CCCCC-----CCcEEEEeecCCccccCcc
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA---------SSF-DSQVK-----PPDVATVLPMDGFHLYLSQ 140 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G---------~~~-~~~~~-----~~~~g~~i~~~~~~~~~~~ 140 (229)
+.+.+| +++|+||||||||||+++|+|++ .|..| +++ .+... ...++.+++.....
T Consensus 18 l~~~~g-~~~i~G~nGsGKStll~al~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----- 88 (197)
T cd03278 18 IPFPPG-LTAIVGPNGSGKSNIIDAIRWVL---GEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----- 88 (197)
T ss_pred eecCCC-cEEEECCCCCCHHHHHHHHHHHh---ccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-----
Confidence 347889 99999999999999999999998 55533 222 22211 12234433222211
Q ss_pred CChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhh----cCCcEEEEcCCcCCCChh
Q 026996 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 141 l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~----~~~~illlDe~~~~LD~~ 216 (229)
++.. ....+.++++. ....+.++..||+||+||+++|++++ .+|+++|+|||+++||+.
T Consensus 89 -------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 89 -------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred -------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 0000 12234445544 33456778899999999999999986 467999999999999999
Q ss_pred hHHHHHHHHHh
Q 026996 217 VWKDVSSMFDE 227 (229)
Q Consensus 217 ~~~~~~~ll~~ 227 (229)
....+.+++.+
T Consensus 152 ~~~~l~~~l~~ 162 (197)
T cd03278 152 NVERFARLLKE 162 (197)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 354
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=7.9e-21 Score=159.19 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 166 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 166 ~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+.++.++.. .+.++.+||+||+||+++|++++.+| +++|+|||+++||+..+.++.+++..
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~ 184 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKR 184 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 4566666542 46788999999999999999999998 59999999999999999999988764
No 355
>PTZ00243 ABC transporter; Provisional
Probab=99.84 E-value=3.2e-21 Score=197.78 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=114.5
Q ss_pred chhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++|+.+|.+. +.|++||++||+|++|||||||+++|.|++ .|++|++ ++|.++ +.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~---~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV---EVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEcccCCHHHHHh
Confidence 47889999999652 238899999999999999999999999999 8999996 444333 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCCCC----CCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG~k~R 190 (229)
.++. ++|+.+.+. -|+.+|+... .....+++.++++..+ .+.+..+ ..||||||||
T Consensus 1385 ~I~i-VpQdp~LF~---gTIreNIdp~-------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr 1453 (1560)
T PTZ00243 1385 QFSM-IPQDPVLFD---GTVRQNVDPF-------LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453 (1560)
T ss_pred cceE-ECCCCcccc---ccHHHHhCcc-------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH
Confidence 4555 677776544 3777776421 1233445555555332 2233333 4699999999
Q ss_pred hhhhhhhhcC-CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~-~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+ |+||||||+|+.+|....+.+.+.+..
T Consensus 1454 LaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999985 899999999999999999998887754
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=3.6e-21 Score=197.36 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=113.7
Q ss_pred chhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++|+.+|++. +.|++||++||+|++|||||||+++|.|++ .|++|++ ++|.++ +.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~---~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN---ESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---cCCCCeEEECCEEccccCHHHHHh
Confidence 47788888888642 238999999999999999999999999999 8999996 444333 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCCCC----CCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG~k~R 190 (229)
.++. +.|+.+.+. -+..+|+... + ....+++.++++..+ .+.+..+ ..||||||||
T Consensus 1361 ~i~i-VpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1361 KITI-IPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred cCeE-ECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 4455 677776554 2677776421 1 223344444444322 2334444 4699999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+|||+||+|+.+|.+....+.+.+..
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887754
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2e-20 Score=176.86 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=111.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CC-----CCcEEEEeecCCccccCccCChhhhHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK-----PPDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~ 150 (229)
.+++||+.||+||+||||||||++|+|....-...+|++..++ .. ....|+ +.|++..... +|+.|.+.+.
T Consensus 52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~y-V~QdD~l~~~--LTV~EtL~f~ 128 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGY-VQQDDVLLPT--LTVRETLRFS 128 (613)
T ss_pred EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEE-Eccccccccc--ccHHHHHHHH
Confidence 3889999999999999999999999998731124678864443 22 334666 5666653333 8999998876
Q ss_pred HHhcCCCC----CccHHHHHHHHHhhhhc--CCCCCC-----CCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 151 HARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAP-----SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 151 ~~~~g~~~----~~~~~~~~~~l~~l~~~--~~~~~~-----~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
...+ .+. ....+.+.++++.|+.. .+..++ -+|||||+||++|.-++.+|.||++||||++||.....
T Consensus 129 A~lr-lp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~ 207 (613)
T KOG0061|consen 129 ALLR-LPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSAL 207 (613)
T ss_pred HHhc-CCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHH
Confidence 5543 233 33455667777777754 444444 59999999999999999999999999999999999998
Q ss_pred HHHHHHHh
Q 026996 220 DVSSMFDE 227 (229)
Q Consensus 220 ~~~~ll~~ 227 (229)
++.+.+..
T Consensus 208 ~vv~~Lk~ 215 (613)
T KOG0061|consen 208 QVVQLLKR 215 (613)
T ss_pred HHHHHHHH
Confidence 88888764
No 358
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=165.21 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=111.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCccc-cCCCCC------------CCcEEEEeecCCccccCccC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVK------------PPDVATVLPMDGFHLYLSQL 141 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G~~-~~~~~~------------~~~~g~~i~~~~~~~~~~~l 141 (229)
.|.+||.+||+|.+|||||-..+.|++++.... --+|++ |.+.++ -.+++. +++......++-.
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M-IFQEPMtSLNPl~ 110 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM-IFQEPMTSLNPLH 110 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE-EecccccccCcHh
Confidence 389999999999999999999999999983100 113443 444333 124555 4455443333323
Q ss_pred ChhhhH-HHHHHhcCCCCCccHHHHHHHHHhhhhc-----CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 142 DAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 142 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
+....+ +......++.......+++++++.++.. .+.++++|||||+|||+||+|++.+|++||.||||.+||.
T Consensus 111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDV 190 (534)
T COG4172 111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDV 190 (534)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhh
Confidence 333333 3333455666666677888889888753 4678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 026996 216 GVWKDVSSMFDEK 228 (229)
Q Consensus 216 ~~~~~~~~ll~~~ 228 (229)
..+.++.+++.+.
T Consensus 191 tvQaQIL~Ll~~L 203 (534)
T COG4172 191 TVQAQILDLLKEL 203 (534)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999998753
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.83 E-value=5.9e-21 Score=171.79 Aligned_cols=138 Identities=19% Similarity=0.129 Sum_probs=102.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.+.+||.+|||||||||||||.|+|.|.. .|.+|.+ +++.++ -..+|| +.|+-..+. =|+.+|
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w---~p~~G~VRLDga~l~qWd~e~lG~hiGY-LPQdVeLF~---GTIaeN 429 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIW---PPTSGSVRLDGADLRQWDREQLGRHIGY-LPQDVELFD---GTIAEN 429 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHccc---ccCCCcEEecchhhhcCCHHHhccccCc-CcccceecC---CcHHHH
Confidence 348999999999999999999999999999 9999996 444333 234555 444443322 367777
Q ss_pred HHHHHHhcCCCCCccHHH---------HHHHHHhhhhcCCCCCC----CCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 147 PKEAHARRGAPWTFNPLL---------LLNCLKNLRNQGSVYAP----SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~---------~~~~l~~l~~~~~~~~~----~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+..+.. +.+.++ +.+.+-.+..+-+..+. .||||||||+++|||+-.+|.+++||||-+.|
T Consensus 430 IaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNL 503 (580)
T COG4618 430 IARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503 (580)
T ss_pred HHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCc
Confidence 664321 112222 24444455555566555 79999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHH
Q 026996 214 DGGVWKDVSSMFD 226 (229)
Q Consensus 214 D~~~~~~~~~ll~ 226 (229)
|+.....+.+-+.
T Consensus 504 D~~GE~AL~~Ai~ 516 (580)
T COG4618 504 DSEGEAALAAAIL 516 (580)
T ss_pred chhHHHHHHHHHH
Confidence 9999888877654
No 360
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=2.1e-20 Score=157.74 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCCCCCCCCccccchhhhhhhhhc----CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 176 GSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 176 ~~~~~~~lSgG~k~Rl~~a~al~~----~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+.++..||+||+||+++|++++. +|+++|+|||+++||+...+.+.+.+.+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 456788999999999999999963 5899999999999999999999888765
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=1.1e-20 Score=193.77 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=106.5
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
.++++++++.|++ . +.+++|++++|+||||||||||+++|+|++ .|++|++..++ .+++ +.++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~---~~~~G~i~~~g----~i~y-v~Q~ 707 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM---DKVEGHVHMKG----SVAY-VPQQ 707 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---ccCCcEEEECC----EEEE-EcCC
Confidence 4667777777753 1 238899999999999999999999999999 89999965433 3565 4455
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH------hhhh---c----CCCCCCCCCccccchhhhhhhhhc
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK------NLRN---Q----GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~------~l~~---~----~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
..... .++.+|+.+.. + .+.+...++++ .+.. + .......||||||||+++|||+..
T Consensus 708 ~~l~~---~Ti~eNI~~g~-----~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 708 AWIQN---DSLRENILFGK-----A--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred ccccC---CcHHHHhhcCC-----c--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 44322 47778766431 1 12222222222 2221 1 124466899999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+|+++|+|||+++||....+.+.+.+.
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 999999999999999999999887663
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.3e-20 Score=193.13 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=105.3
Q ss_pred chhhhhhhhhcCC---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeec
Q 026996 62 KTSLKVLCSQRRE---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (229)
Q Consensus 62 ~~~~~~l~~~~~~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~ 131 (229)
.+++++++.+|++ . +.+++|+.++|+|++|||||||+++|.|.+ .|++|.+.. ....+++ +.|
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~---~~~~G~i~~---~~~~Iay-v~Q 686 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL---SHAETSSVV---IRGSVAY-VPQ 686 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---cccCCCEEE---ecCcEEE-EcC
Confidence 3566677777753 2 238999999999999999999999999999 899986421 1334565 566
Q ss_pred CCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---------hhcCCCCC----CCCCccccchhhhhhhhh
Q 026996 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVYA----PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---------~~~~~~~~----~~lSgG~k~Rl~~a~al~ 198 (229)
+...+. -|+.+|+.+.. .++.+++.++++.. ..+.+..+ ..||||||||+++|||+.
T Consensus 687 ~p~Lf~---gTIreNI~fg~-------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 687 VSWIFN---ATVRENILFGS-------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred cccccc---ccHHHHhhcCC-------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 665444 37888876532 12344444444422 22223333 369999999999999999
Q ss_pred cCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 199 LQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 199 ~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
.+|+|+|||||+++||....+++.+
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~ 781 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFD 781 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHH
Confidence 9999999999999999988776654
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.82 E-value=1.3e-20 Score=192.80 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=113.1
Q ss_pred chhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++|+.+|++. +.|++||++||+|++|||||||+++|.|++ . ++|++ +++.++ +.
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~---~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL---S-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc---C-CCcEEEECCEEcccCCHHHHHh
Confidence 47788899999642 238999999999999999999999999998 5 78995 444332 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh---------cCCCCCC----CCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYAP----SFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~~~----~lSgG~k~R 190 (229)
.+++ ++|+.+.+. -++.+|+... .....+.+.++++..+. +.+..+. .||+|||||
T Consensus 1293 ~is~-IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271 1293 AFGV-IPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred ceEE-EeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence 4555 677877554 3777776421 12334555555554332 2333333 699999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+||||||||+.+|......+.+.+..
T Consensus 1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887764
No 364
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.4e-21 Score=172.75 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=110.6
Q ss_pred ccchhhhhhhhhcCCc-c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------C
Q 026996 60 QNKTSLKVLCSQRREI-P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------P 122 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~ 122 (229)
+-.+++++|+++|+.. + ++.+|+.++|+||+|+||||++|+|-.++ .-++|.+ ++++++ +
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff---dv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF---DVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh---hccCceEEEcCchHHHHHHHHHH
Confidence 3347889999999765 2 38899999999999999999999999999 7899995 666555 3
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHH-----HHHHHHHhhhh---cCCCCCC----CCCccccch
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRN---QGSVYAP----SFDHGVGDP 190 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-----~~~~~l~~l~~---~~~~~~~----~lSgG~k~R 190 (229)
..+|. +++|.....+ +...|+++ +-+.+.+++ +...+-+.+.. +-+.+++ .||||||||
T Consensus 612 s~IGV-VPQDtvLFNd---TI~yNIry-----ak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 612 SSIGV-VPQDTVLFND---TILYNIRY-----AKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HhcCc-ccCcceeecc---eeeeheee-----cCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 34565 5666654332 34444433 222222211 11122222222 2223333 799999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
|++||++.+.|.|+++||.|++||.+..+++...+...
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999988887766543
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.82 E-value=8.8e-21 Score=194.94 Aligned_cols=144 Identities=20% Similarity=0.175 Sum_probs=105.7
Q ss_pred chhhhhhhhhcCC---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ccccCCCCCCCcEEEEee
Q 026996 62 KTSLKVLCSQRRE---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVLP 130 (229)
Q Consensus 62 ~~~~~~l~~~~~~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~-G~~~~~~~~~~~~g~~i~ 130 (229)
.+++++++.+|++ . +.+++|+.++|+||+|||||||+++|.|.+ .|++ |++.. ...+++ +.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~---~~~~GG~I~l----~~~Iay-v~ 685 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL---PPRSDASVVI----RGTVAY-VP 685 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh---ccCCCceEEE----cCeEEE-Ec
Confidence 3566677777753 1 238999999999999999999999999999 8999 88643 334555 56
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHh---------hhhcCCCCC----CCCCccccchhhhhhhh
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~~----~~lSgG~k~Rl~~a~al 197 (229)
|+...+. -|+.+|+.+.. + ++.+++.++++. +..+.+..+ ..||||||||+++|||+
T Consensus 686 Q~p~Lfn---gTIreNI~fg~-----~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 686 QVSWIFN---ATVRDNILFGS-----P--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred CccccCC---CCHHHHHhCCC-----c--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 6665444 47888876532 1 234444444442 222233333 36999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
..+|+|+|||||+++||....+++.+
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHH
Confidence 99999999999999999987776643
No 366
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4e-20 Score=152.17 Aligned_cols=150 Identities=22% Similarity=0.166 Sum_probs=99.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-------CCcEEEEeecCCccccCccCChhhhH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------PPDVATVLPMDGFHLYLSQLDAMEDP 147 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~-------~~~~g~~i~~~~~~~~~~~l~~~~~~ 147 (229)
..|+.||+.+|+||||||||||.++|+|.- ..++++|++ +++..+ +...|..+.+. +....+..+..+.+
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ-~P~ei~GV~~~~fL 102 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPDERARAGIFLAFQ-YPVEIPGVTNSDFL 102 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHhHHHhcCCEEeec-CCccCCCeeHHHHH
Confidence 348999999999999999999999999973 347899995 566554 23344433221 11122223333333
Q ss_pred HHHHHh-cCCCC--CccHHHHHHHHHhhhhc---CCCCCC-CCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHH
Q 026996 148 KEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220 (229)
Q Consensus 148 ~~~~~~-~g~~~--~~~~~~~~~~l~~l~~~---~~~~~~-~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~ 220 (229)
...... .+... ......+.+.++.++.. .++.+. -||||||+|..++.+++.+|++.|||||-++||...-+.
T Consensus 103 r~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~ 182 (251)
T COG0396 103 RAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182 (251)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHH
Confidence 322111 11111 11133445555555543 345555 599999999999999999999999999999999988877
Q ss_pred HHHHHHh
Q 026996 221 VSSMFDE 227 (229)
Q Consensus 221 ~~~ll~~ 227 (229)
+.+-++.
T Consensus 183 V~~~i~~ 189 (251)
T COG0396 183 VAEGINA 189 (251)
T ss_pred HHHHHHH
Confidence 7776653
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.82 E-value=1.7e-20 Score=191.97 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=96.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.|++|++++|+|||||||||||++|+|++ .|++|++..++ .+++ +.++..... .++.+|+.+...
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~---~~~~G~i~~~g----~iay-v~Q~~~l~~---~Ti~eNI~~g~~--- 512 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGEL---EPSEGKIKHSG----RISF-SPQTSWIMP---GTIKDNIIFGLS--- 512 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECC----EEEE-EeCCCccCC---ccHHHHHHhccc---
Confidence 458999999999999999999999999999 89999965433 3566 444443322 378888765321
Q ss_pred CCCCccHHHHH------HHHHhhhhcC----CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 156 APWTFNPLLLL------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 156 ~~~~~~~~~~~------~~l~~l~~~~----~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
+. ......+. +.++.+..+. ......||||||||+++|||+..+|+++|||||+++||....+++.+.
T Consensus 513 ~~-~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 513 YD-EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred cc-hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 10 00111111 1222222221 234568999999999999999999999999999999999999998874
No 368
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=4.6e-20 Score=156.71 Aligned_cols=155 Identities=10% Similarity=0.065 Sum_probs=97.9
Q ss_pred hhcCCccccc--CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-cccCCCC-----------C-CCcEEEEeecCCc
Q 026996 70 SQRREIPVVE--ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQV-----------K-PPDVATVLPMDGF 134 (229)
Q Consensus 70 ~~~~~~~~i~--~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G-~~~~~~~-----------~-~~~~g~~i~~~~~ 134 (229)
+.|.+...+. ...+++|+||||||||||+++|++++ .+..| ++...+. . ...++.+++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll---~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~ 88 (251)
T cd03273 12 KSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVL---GITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDK 88 (251)
T ss_pred cccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHh---cccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCc
Confidence 5677665442 45688999999999999999999998 56533 3221110 0 1123333332211
Q ss_pred c------ccCccCChhhhHHHHHHhcC-C-CCCccHHHHHHHHHhhhhc----------------------CCCCCCCCC
Q 026996 135 H------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ----------------------GSVYAPSFD 184 (229)
Q Consensus 135 ~------~~~~~l~~~~~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~~~----------------------~~~~~~~lS 184 (229)
. ...+.+++.+++........ . ........+.+.++.++.. .+.++..||
T Consensus 89 ~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS 168 (251)
T cd03273 89 SQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELS 168 (251)
T ss_pred ccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccC
Confidence 0 01112344433322111111 1 1122345566677766543 235688999
Q ss_pred ccccchhhhhhhhh----cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 185 HGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 185 gG~k~Rl~~a~al~----~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||+||+++|++++ .+|+++|+|||+++||+.....+.+++.+
T Consensus 169 ~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~ 215 (251)
T cd03273 169 GGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKT 215 (251)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999997 57899999999999999999999988865
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=7.7e-20 Score=187.68 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=95.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.|++|++++|+||||||||||+++|+|++ .|++|++... ..++++ .++..... .++.+|+.+...
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~---~~~~G~i~~~----~~i~yv-~Q~~~l~~---~Tv~enI~~~~~--- 746 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQF---EISEGRVWAE----RSIAYV-PQQAWIMN---ATVRGNILFFDE--- 746 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEEC----CeEEEE-eCCCccCC---CcHHHHHHcCCh---
Confidence 448999999999999999999999999999 8999996542 346664 44443222 478888764211
Q ss_pred CCCCccHHHH---------HHHHHhhh----hcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 156 APWTFNPLLL---------LNCLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 156 ~~~~~~~~~~---------~~~l~~l~----~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
.+.+.+ .+.++.+. .....+...||||||||+++|||+..+|+++|+|||+++||.....++.
T Consensus 747 ----~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~ 822 (1560)
T PTZ00243 747 ----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVV 822 (1560)
T ss_pred ----hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 111111 22233331 1224567799999999999999999999999999999999998777765
Q ss_pred H
Q 026996 223 S 223 (229)
Q Consensus 223 ~ 223 (229)
+
T Consensus 823 ~ 823 (1560)
T PTZ00243 823 E 823 (1560)
T ss_pred H
Confidence 5
No 370
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=8.4e-20 Score=162.62 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=101.9
Q ss_pred ccchhhhhhhhhcCCccc------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 60 QNKTSLKVLCSQRREIPV------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
...++-..+.|.|++..+ +..||++|++||||-|||||.++|+|.+ +|++|. .. ..++.+ -+.
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i---kPdeg~-~~----~~~vSy---KPQ 408 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI---KPDEGS-EE----DLKVSY---KPQ 408 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccc---cCCCCC-Cc----cceEee---cce
Confidence 445566778999998743 7889999999999999999999999999 999996 11 111111 111
Q ss_pred ccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH--hhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 134 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
|......-++.+.+....... +.. .....+++. ++..-.+.++..|||||.|||++|.+|..+++++++|||.+
T Consensus 409 yI~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 409 YISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred eecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 111111134444333221110 111 111223444 23334578899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHH
Q 026996 212 FLDGGVWKDVSSMF 225 (229)
Q Consensus 212 ~LD~~~~~~~~~ll 225 (229)
.||.+.+-.+...+
T Consensus 485 ~LDvEqR~~vakvI 498 (591)
T COG1245 485 YLDVEQRIIVAKVI 498 (591)
T ss_pred hccHHHHHHHHHHH
Confidence 99998766555544
No 371
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.4e-19 Score=158.88 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=106.3
Q ss_pred ccchhhhhhhhhcCCc-c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-CCCCcEEEEee
Q 026996 60 QNKTSLKVLCSQRREI-P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPPDVATVLP 130 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~~~~~~g~~i~ 130 (229)
-+.++++++..+|.+. + .|++||++-|+|.||||||||+++|+|++ +|++|++.+++ .+.++ +
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~---~PqsG~I~ldg~pV~~e-----~ 391 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY---QPQSGEILLDGKPVSAE-----Q 391 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc---CCCCCceeECCccCCCC-----C
Confidence 4557888899998877 2 28899999999999999999999999999 99999865443 22111 1
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC-------CCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-------~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
.++|..-. -.+......+....+.......+.+...+++|.... ....-.||.|||+|+++..|+..+-+|
T Consensus 392 ledYR~Lf--SavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 392 LEDYRKLF--SAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred HHHHHHHH--HHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 11111000 001111111112223222234556666777666432 333447999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHH
Q 026996 204 VIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~l 224 (229)
+++|||-+--||.+++.+...
T Consensus 470 lv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred EEeehhhccCChHHHHHHHHH
Confidence 999999999999988876653
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.7e-19 Score=162.42 Aligned_cols=154 Identities=11% Similarity=-0.028 Sum_probs=97.9
Q ss_pred ccchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 60 QNKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
...+...++.-+||++.+ +..|.++||+|+||+|||||||+|+.-.-..-|..= ...|..+...
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq---------E~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ---------EVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh---------heeccchHHH
Confidence 344556678889998843 778999999999999999999999862100011100 0011111000
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHH-HHHhhhhcC---CCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~-~l~~l~~~~---~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
.. ... +......+......+......+.+.. +|..+++.. ..++..||||-|+|+++|||+..+||||||||
T Consensus 149 ~~-~l~---~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE 224 (582)
T KOG0062|consen 149 QS-VLE---SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE 224 (582)
T ss_pred hh-hhh---ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC
Confidence 00 000 01111112211111111112334444 777777753 57899999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHH
Q 026996 209 NYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~ 226 (229)
||+.||..+...+.+.+.
T Consensus 225 PTNhLDv~av~WLe~yL~ 242 (582)
T KOG0062|consen 225 PTNHLDVVAVAWLENYLQ 242 (582)
T ss_pred CcccchhHHHHHHHHHHh
Confidence 999999999888887764
No 373
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.9e-19 Score=158.78 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=116.5
Q ss_pred CccCccccccccchhhhhhhhhcCCc-cc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCC
Q 026996 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (229)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~ 121 (229)
|.|+.+...--.++.+++|++.|.+. ++ |.--.+|+|+||||.||||||++|.|-+ .|+.|+...+.
T Consensus 574 F~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl---~P~~GE~RKnh-- 648 (807)
T KOG0066|consen 574 FQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL---DPNDGELRKNH-- 648 (807)
T ss_pred EecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC---CCCcchhhccc--
Confidence 33444344455678889999999544 43 5567899999999999999999999999 89999865444
Q ss_pred CCcEEEEeecCCccccCccCChhhhH-HHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhh
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al 197 (229)
+-.+|. +.+... ..++..+.. .+..+.+.++ .......+..++.. ....+..|||||+.||++|-.-
T Consensus 649 rL~iG~-FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGW-FDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeec-hhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh
Confidence 223444 211111 113433332 3333444433 34555566655543 3467889999999999999998
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+..|+||||||||..||.++...+.+.+++
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 899999999999999999999988887764
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.77 E-value=5.5e-19 Score=146.68 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=80.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc--------CCCCCCCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--------DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~--------~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
+|++++|+|+||||||||+++|++.+. .+..+... ........++..++..+.. ..+...
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~-----~~~~r~----- 94 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALY--GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKK-----YRVERS----- 94 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEe--cCccccccchhHHHHhcCCCccEEEEEEEEECCeE-----EEEEEe-----
Confidence 478999999999999999999996441 22222211 1111112233333222111 011111
Q ss_pred HhcCCCCCccHHHHHHH--HH--hhhhcCCCCCCCCCccccchhhhhhhhhc----------CCcEEEEcCCcCCCChhh
Q 026996 152 ARRGAPWTFNPLLLLNC--LK--NLRNQGSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~--l~--~l~~~~~~~~~~lSgG~k~Rl~~a~al~~----------~~~illlDe~~~~LD~~~ 217 (229)
.+. +...+.+. +. .+....+.++..||+||+||+++|++++. +|+++|+|||+++||+..
T Consensus 95 --~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~ 168 (213)
T cd03279 95 --RGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA 168 (213)
T ss_pred --cCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHH
Confidence 121 11222111 11 12334467888999999999999999974 578999999999999999
Q ss_pred HHHHHHHHHh
Q 026996 218 WKDVSSMFDE 227 (229)
Q Consensus 218 ~~~~~~ll~~ 227 (229)
+..+.+++.+
T Consensus 169 ~~~~~~~l~~ 178 (213)
T cd03279 169 LEAVATALEL 178 (213)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.77 E-value=2.8e-18 Score=159.19 Aligned_cols=139 Identities=16% Similarity=0.074 Sum_probs=98.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+++|+.+-|.|+||||||||+|.|+|+. +--+|++.... . ....++++..|.... +..+.+.+ -..
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLW---P~g~G~I~~P~--~-~~~lflpQ~PY~p~G---tLre~l~Y----P~~ 481 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLW---PWGSGRISMPA--D-SALLFLPQRPYLPQG---TLREALCY----PNA 481 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccC---ccCCCceecCC--C-CceEEecCCCCCCCc---cHHHHHhC----CCC
Confidence 38899999999999999999999999997 33355532211 1 112224555553321 33332221 111
Q ss_pred CCCccHHHHHHHHHhhhh--------cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 157 PWTFNPLLLLNCLKNLRN--------QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~--------~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
...+..+.+.+++..++. ..+..-..||+|||||+++||.+..+|+++++||.|++|||+....+.+++++.
T Consensus 482 ~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 482 APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561 (604)
T ss_pred CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh
Confidence 222556667777775543 234456689999999999999999999999999999999999999999998763
No 376
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.77 E-value=1e-18 Score=144.31 Aligned_cols=130 Identities=14% Similarity=0.063 Sum_probs=84.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHH----HhhcccCCCCccc------cCCCCCCCcEEEEeecCCcccc--CccCChh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASS------FDSQVKPPDVATVLPMDGFHLY--LSQLDAM 144 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~----Gl~~~~~p~~G~~------~~~~~~~~~~g~~i~~~~~~~~--~~~l~~~ 144 (229)
.+.+| +++|+||||||||||+++|. |.. .|+.|.+ +........++..++......+ ...+++.
T Consensus 19 ~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~---~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 19 EFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL---PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC---CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 36677 99999999999999999996 554 5666632 2222222334443433311111 0011233
Q ss_pred hhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccch------hhhhhhhhcCCcEEEEcCCcCCCChhhH
Q 026996 145 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGVW 218 (229)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~R------l~~a~al~~~~~illlDe~~~~LD~~~~ 218 (229)
+++.+ .+ .....+.+ +.++..||+||+|| ++++++++.+|+++|+|||++.||+..+
T Consensus 95 ~~~~~------~~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 95 ENVIF------CH----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred hceee------ec----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHH
Confidence 32211 01 11111111 66788999999996 7889999999999999999999999999
Q ss_pred H-HHHHHHHh
Q 026996 219 K-DVSSMFDE 227 (229)
Q Consensus 219 ~-~~~~ll~~ 227 (229)
. .+.+++.+
T Consensus 158 ~~~l~~~l~~ 167 (204)
T cd03240 158 EESLAEIIEE 167 (204)
T ss_pred HHHHHHHHHH
Confidence 8 88888764
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=9.3e-20 Score=151.37 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=47.0
Q ss_pred cCCCCCCCCCccccchhhhhhhhhc----CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 175 QGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 175 ~~~~~~~~lSgG~k~Rl~~a~al~~----~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+.++..||+||+||+++|++++. +|+++++|||+++||+..+..+.+++.+
T Consensus 120 ~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~ 176 (212)
T cd03274 120 KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKE 176 (212)
T ss_pred ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 3466788999999999999999964 5899999999999999999999998865
No 378
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-19 Score=158.74 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=105.8
Q ss_pred chhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CCc
Q 026996 62 KTSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~~ 124 (229)
.+.+.+++.+|+.. +.++.|+.++++|++|+||||++++|-.++ .+++|.+ ++++.+ +..
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy---D~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY---DVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh---CCcCceEEEcchhHHHhHHHHHHHH
Confidence 35677788888765 348899999999999999999999999999 8999985 455443 122
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHH--------HHHHHHHhhhhcCCCCCC----CCCccccchhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--------LLLNCLKNLRNQGSVYAP----SFDHGVGDPVE 192 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~--------~~~~~l~~l~~~~~~~~~----~lSgG~k~Rl~ 192 (229)
+|. +++|.....+ +...|+. ++-+...+.+ ++...++.+-.+.+..++ .+||||||||+
T Consensus 339 Ig~-VPQDtvLFND---ti~yni~-----ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 339 IGI-VPQDTVLFND---TIAYNIK-----YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred hCc-Ccccceehhh---hHHHHHh-----ccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 344 4555432221 2333322 2323222211 112223333333444444 69999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||++..+|+|+++||.|+.||....+++..-+++
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~ 444 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALRE 444 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999988888776654
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.76 E-value=5.2e-19 Score=160.19 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=98.4
Q ss_pred ccchhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc---ccCCCCCCCcEEEEe
Q 026996 60 QNKTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPPDVATVL 129 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~---~~~~~~~~~~~g~~i 129 (229)
...+.+++++..|.++.+ +.+|+.+||+|+|||||||+|++|+|-. .|..-+ +.......+.....+
T Consensus 73 s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e---~P~p~~~d~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE---VPIPEHIDFYLLSREIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC---CCCCcccchhhhcccCCCchHHHH
Confidence 345667788888887743 7899999999999999999999999987 554322 222222221111111
Q ss_pred ecCCccccCccCChhhhHHHHHHhcC--------------------CCCCccHHHHHHHHHhhhh---cCCCCCCCCCcc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRG--------------------APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (229)
+...... ......+++...... ...+....++..++-.+++ ..++++..||||
T Consensus 150 ~~v~~~~----~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 150 QAVVMET----DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHhhhh----HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 0000000 000000111111000 0000111122333333333 346788899999
Q ss_pred ccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 187 ~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+++|+++|++|..+|++|++||||+.||.+.+..+.+.+.
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~ 265 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA 265 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888887764
No 380
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=1.1e-17 Score=137.48 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=82.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Ccc----ccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS----SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~--~G~----~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
+.+| +.+|+||||||||||+..|...+....+. .|. ++..+.....+...+...+... +
T Consensus 19 f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---------~----- 83 (198)
T cd03276 19 FGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---------N----- 83 (198)
T ss_pred cCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---------C-----
Confidence 4455 77999999999999999998665211110 121 1111111112222222111110 0
Q ss_pred HhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhh----hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al----~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.........+.++++. ....+.++..||+||+||+++|+++ +.+|+++|+|||++++|......+.+++.+
T Consensus 84 ----~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~ 158 (198)
T cd03276 84 ----PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVK 158 (198)
T ss_pred ----cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence 0001112334455554 4445778899999999999999999 589999999999999999999888887754
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=2e-18 Score=146.37 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=44.1
Q ss_pred CCCCCCccccchhhhhhhhhcC----CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 179 YAPSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 179 ~~~~lSgG~k~Rl~~a~al~~~----~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++..||+||+||+++|++++.+ |+++|+|||+++||...+..+.+++.+
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~ 204 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIRE 204 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 3478999999999999999864 899999999999999999998888765
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.70 E-value=6.1e-17 Score=138.27 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcC---CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 163 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 163 ~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~---~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....+.++.++.. .+.++.+|||||+||+++|++++.+ |+++|+|||+++||+.....+.+++..
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~ 217 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3445566655553 4677889999999999999999986 799999999999999999999988865
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=1.5e-16 Score=156.43 Aligned_cols=146 Identities=13% Similarity=0.047 Sum_probs=105.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCC-----CCCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~-----~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
+++|-..||+|+|||||||||++|+|.... --.+|++ ++|.. .++..|+ ++|++.+. +.+|++|-+.+-.
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GY-vqQ~DiH~--~~~TVrESL~fSA 889 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGY-VEQQDIHS--PELTVRESLRFSA 889 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccce-eecccccC--cccchHHHHHHHH
Confidence 889999999999999999999999996410 1234553 33322 2456787 55665554 3489999887765
Q ss_pred HhcCC---CCCccHHHHHHHHHhhhhc--CCCCCCC----CCccccchhhhhhhhhcCC-cEEEEcCCcCCCChhhHHHH
Q 026996 152 ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPS----FDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 152 ~~~g~---~~~~~~~~~~~~l~~l~~~--~~~~~~~----lSgG~k~Rl~~a~al~~~~-~illlDe~~~~LD~~~~~~~ 221 (229)
..+-- +.+...+.+.++++-|+.. .+.-++. ||..||+|+.||.-|+.+| .||+|||||++||......+
T Consensus 890 ~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i 969 (1391)
T KOG0065|consen 890 ALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIV 969 (1391)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHH
Confidence 54321 2222234456777766554 4444444 9999999999999999999 99999999999999887777
Q ss_pred HHHHHh
Q 026996 222 SSMFDE 227 (229)
Q Consensus 222 ~~ll~~ 227 (229)
++++..
T Consensus 970 ~~~lrk 975 (1391)
T KOG0065|consen 970 MRFLRK 975 (1391)
T ss_pred HHHHHH
Confidence 777654
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.67 E-value=1.8e-17 Score=147.79 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=96.3
Q ss_pred hhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCC----CCCcEEEEeecCCccc
Q 026996 68 LCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KPPDVATVLPMDGFHL 136 (229)
Q Consensus 68 l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~----~~~~~g~~i~~~~~~~ 136 (229)
++++|+.. ++.++|.++||+|+||-||||.+|+|+|.+ +|.-|+.-.... +..-.|.-+ +++|..
T Consensus 80 ~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel---~PNLG~~~~pp~wdeVi~~FrGtEL-q~YF~~ 155 (591)
T COG1245 80 VVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGEL---KPNLGRYEDPPSWDEVIKRFRGTEL-QNYFKK 155 (591)
T ss_pred ceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCcc---ccCCCCCCCCCCHHHHHHHhhhhHH-HHHHHH
Confidence 67788754 457899999999999999999999999999 888886322110 010111100 111000
Q ss_pred -cCccCCh---hhhHHHHHHh-cCC----CCCcc-HHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEE
Q 026996 137 -YLSQLDA---MEDPKEAHAR-RGA----PWTFN-PLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 137 -~~~~l~~---~~~~~~~~~~-~g~----~~~~~-~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~il 204 (229)
....+.. -++++.+.+. .|- ....+ .-...++.+.|+. -.++.+.+|||||.||+++|.+++.+++++
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEE
Confidence 0000000 0111111111 110 00000 0122344444433 457889999999999999999999999999
Q ss_pred EEcCCcCCCChhhHHHHHHHHHh
Q 026996 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 llDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||++.||...+..+..++.+
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Ire 258 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRE 258 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHH
Confidence 99999999999887777766654
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.65 E-value=4.8e-17 Score=129.27 Aligned_cols=139 Identities=20% Similarity=0.127 Sum_probs=86.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCcE--------EEEeecCCccccCccCChhhhHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDV--------ATVLPMDGFHLYLSQLDAMEDPK 148 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~~~~--------g~~i~~~~~~~~~~~l~~~~~~~ 148 (229)
+..||++-+|||||||||||+-.++|++ |-+|++ +.+..+.... .+.-++..- .+ .+.++.++.
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p-~f--~mpV~~YL~ 94 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP-PF--AMPVWHYLT 94 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHHHHHHHHHhhccCC-cc--hhhhhhhhh
Confidence 7899999999999999999999999997 888874 4444331111 110011100 00 022222211
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh-------cCCcEEEEcCCcCCCChhhHH
Q 026996 149 EAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~-------~~~~illlDe~~~~LD~~~~~ 219 (229)
. ..|.......+..+...+.. .....+.+|||||-|||-+|.... ...+++|+|||.+.||...+.
T Consensus 95 L-----~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~ 169 (248)
T COG4138 95 L-----HQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS 169 (248)
T ss_pred h-----cCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHH
Confidence 1 11222222233333333333 345667899999999998887643 246799999999999998777
Q ss_pred HHHHHHHhh
Q 026996 220 DVSSMFDEK 228 (229)
Q Consensus 220 ~~~~ll~~~ 228 (229)
.+-.++...
T Consensus 170 aLdrll~~~ 178 (248)
T COG4138 170 ALDRLLSAL 178 (248)
T ss_pred HHHHHHHHH
Confidence 776666543
No 386
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=4.4e-16 Score=155.54 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=96.5
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.|++|+.+||+|+-|||||+||..|.|.+ ...+|++...+ ..++ +.|..-.+. -++.+|+.+.
T Consensus 542 ~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm---~~~sG~v~v~g----siaY-v~Q~pWI~n---gTvreNILFG----- 605 (1381)
T KOG0054|consen 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEM---PKLSGSVAVNG----SVAY-VPQQPWIQN---GTVRENILFG----- 605 (1381)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcCc---ccccceEEEcC----eEEE-eccccHhhC---CcHHHhhhcC-----
Confidence 349999999999999999999999999999 88899864433 2444 344443222 3777776542
Q ss_pred CCCCccHHHHHHHHHh--hh-------hcCCC----CCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 156 APWTFNPLLLLNCLKN--LR-------NQGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~--l~-------~~~~~----~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
..++.+++.++++. |. .+... +.-.||||||||+++|||+-.+++|++||.|++++|.+.-+.+.
T Consensus 606 --~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 606 --SPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred --ccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 23456666666662 21 12222 23379999999999999999999999999999999998766665
Q ss_pred H
Q 026996 223 S 223 (229)
Q Consensus 223 ~ 223 (229)
+
T Consensus 684 ~ 684 (1381)
T KOG0054|consen 684 E 684 (1381)
T ss_pred H
Confidence 4
No 387
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=1.4e-16 Score=158.95 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=106.9
Q ss_pred chhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++++.+|... +.|++||.|||+|..|||||||+..|-.+. .|.+|++ +++-++ +.
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~---e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV---EPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc---CccCCeEEEcCeecccccHHHHHh
Confidence 46788888888765 238999999999999999999999999999 8999995 444332 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhhcCCCCCC----CCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYAP----SFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~~~~----~lSgG~k~R 190 (229)
+. .+++||+..+.. |++.|++-. .++..+++-++++ .+..+.+.++. .+|-||||-
T Consensus 1215 rl-sIIPQdPvLFsG---TvR~NLDPf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1215 RL-SIIPQDPVLFSG---TVRFNLDPF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred cC-eeeCCCCceecC---ccccccCcc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 33 347787765442 444443321 1122233333333 22223444333 699999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||+..+++||++||.|+..|.+.-..+.+.+.+
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 9999999999999999999999999876666655543
No 388
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=139.54 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=96.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhc-CC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA 156 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-g~ 156 (229)
|..|+-+-|.||||||||.|+|+|+|+. .-..|++..-..-.+.....++|.+|...- +..+.+.+..... ..
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLW---p~~~G~l~k~~~~~~~~lfflPQrPYmt~G---TLRdQvIYP~~~~~~~ 531 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLW---PSTGGKLTKPTDGGPKDLFFLPQRPYMTLG---TLRDQVIYPLKAEDMD 531 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhccc---ccCCCeEEecccCCCCceEEecCCCCcccc---chhheeeccCcccccc
Confidence 8899999999999999999999999986 346776321111111222334555553221 3333333331111 11
Q ss_pred CCCccHHHHHHHHHhhhhc--------CC-----CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 157 PWTFNPLLLLNCLKNLRNQ--------GS-----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~--------~~-----~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
....+.+.+...+++++.. .+ -....||+||+||+++||.+-.+|++-||||-|+++|++...++.+
T Consensus 532 ~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr 611 (659)
T KOG0060|consen 532 SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYR 611 (659)
T ss_pred ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHH
Confidence 2223345566666655431 12 2355899999999999999999999999999999999988888877
Q ss_pred HHHh
Q 026996 224 MFDE 227 (229)
Q Consensus 224 ll~~ 227 (229)
.+.+
T Consensus 612 ~~r~ 615 (659)
T KOG0060|consen 612 KCRE 615 (659)
T ss_pred HHHH
Confidence 7654
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.7e-15 Score=135.38 Aligned_cols=164 Identities=21% Similarity=0.199 Sum_probs=113.0
Q ss_pred cccchhhhhhhhh--cCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCC---------cE
Q 026996 59 VQNKTSLKVLCSQ--RREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP---------DV 125 (229)
Q Consensus 59 ~~~~~~~~~l~~~--~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~~---------~~ 125 (229)
+...+++++++.. +.+. +.+.+|||+||.|-=|||+|-|+++|.|.. .+++|++ +++..+.. -+
T Consensus 260 ~~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~---~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 260 GEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR---PASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred CCcEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC---cCCCceEEECCEEccCCCHHHHHHcCC
Confidence 3445556666554 4455 779999999999999999999999999987 7889995 44443321 12
Q ss_pred EEEe---ecCCccccCccCChhhhHHHH-HHh-c--CC-CCCccHHHHHHHHHhhhh---cCCCCCCCCCccccchhhhh
Q 026996 126 ATVL---PMDGFHLYLSQLDAMEDPKEA-HAR-R--GA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 126 g~~i---~~~~~~~~~~~l~~~~~~~~~-~~~-~--g~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~k~Rl~~a 194 (229)
+++- ..++.... .++.+|+... ... . ++ .............+.|.. ..+.++..||||.||++.+|
T Consensus 337 ~~v~EDRk~~Gl~l~---~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 337 AYVPEDRKSEGLVLD---MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred EeCCcccccCcCcCC---CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 3311 11122222 4666775544 111 1 11 111122233445555543 34678889999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
++|..+|++||+||||-+.|...+.++.+++.+.
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l 447 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999988753
No 390
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.54 E-value=7.9e-15 Score=118.66 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCccccchhhhhhhhh----cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 183 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 183 lSgG~k~Rl~~a~al~----~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+||+||+++|++++ .+|+++|+|||++++|+..+..+.+++.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~ 143 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE 143 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999986 68999999999999999999988888764
No 391
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=5.6e-14 Score=116.81 Aligned_cols=51 Identities=16% Similarity=-0.029 Sum_probs=43.5
Q ss_pred CCCCCCCCccccchhhhhhhh----hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 177 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al----~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+..+..||+||+|++.++.++ +.+|+++|+|||++++|+.....+.+++..
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~ 175 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE 175 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 456779999999998776543 479999999999999999999999888754
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.53 E-value=4.2e-14 Score=144.72 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=52.4
Q ss_pred HHHHhhhhc---CCCCCCCCCccccchhhhhhhhh---cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 167 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 167 ~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~---~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.++.++.. .+.++.+|||||+||+++|++++ .+|+++|||||+++||.....++.++++.
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~ 857 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS 857 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 455555542 36788899999999999999997 69999999999999999999999998865
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.52 E-value=2.6e-14 Score=116.39 Aligned_cols=165 Identities=16% Similarity=0.020 Sum_probs=102.8
Q ss_pred cccchhhhhhhhhcCCc-c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCC------Cc
Q 026996 59 VQNKTSLKVLCSQRREI-P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~-~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~------~~ 124 (229)
.+..+++.++...|... + .++.|.+.-++|.||||||||||+|+|-. -.-.|.+...+..+ ..
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh---mv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH---MVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc---cccCCeEEEcCcCccccccccc
Confidence 35567777788888655 2 27899999999999999999999999964 22223321111100 11
Q ss_pred EEEEeecCCccccCc----cCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcC
Q 026996 125 VATVLPMDGFHLYLS----QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~----~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
.|...+..+...... +.+....+.......+... .+.++-...+.-|......+.+..|-|||+||.+++-|..+
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 111111111100000 0010001111112223221 12244445555566666777889999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
=++|++||.|.-||.-.+..+.+++.+
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence 999999999999999999888888865
No 394
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.52 E-value=2.6e-14 Score=123.64 Aligned_cols=135 Identities=23% Similarity=0.360 Sum_probs=97.0
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
+.-.++||.|+||||||||+++|.+++.. .|+.| ...++.+|+|+.... ..+... .....+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g-----------~V~vi~~D~f~~~~~---~l~~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHR-----------KVELITTDGFLHPNQ---VLKERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCC-----------ceEEEecccccccHH---HHHHcC-CccccCCCh
Confidence 45689999999999999999999999821 14444 234577888864321 111111 113457788
Q ss_pred CccHHHHHHHHHhhhhcCC-CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC------hhhHHHHHHHHHhhC
Q 026996 159 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKW 229 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~-~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD------~~~~~~~~~ll~~~~ 229 (229)
.++...+.+.+..+..+.. ..++.||.....++.-....+..++|+|+|+++...+ .+.|..+.+++|.+|
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~I 201 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 201 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEE
Confidence 8888888999998887654 7888999887777655444557899999999988854 445778888888654
No 395
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.51 E-value=3.9e-14 Score=118.29 Aligned_cols=131 Identities=24% Similarity=0.330 Sum_probs=93.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 162 (229)
++||.|+||||||||++.|++.+ .++.+ .. ...++.+|+|+.... ..+... .....+.+..++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l---~~~~~--------~~-~v~vi~~D~f~~~~~---~~~~~~-~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL---SRWPD--------HP-NVELITTDGFLYPNK---ELIERG-LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH---hhcCC--------CC-cEEEEecCcccCcHH---HHHHhh-hhhcCCCcccCCH
Confidence 58999999999999999999998 33111 11 234578888864321 111111 1123566788888
Q ss_pred HHHHHHHHhhhh-cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh-hhHHHHHHHHHhhC
Q 026996 163 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKW 229 (229)
Q Consensus 163 ~~~~~~l~~l~~-~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~-~~~~~~~~ll~~~~ 229 (229)
..+.+.++.+.. .....++.||.....|..-....+..++|+|+|++++..++ +.|..+.+++|.+|
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~i 133 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSI 133 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEE
Confidence 888899998887 45788899999888887665544578899999999999884 45666888877653
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.7e-14 Score=127.58 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=93.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhh-HHHHHHhcCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMED-PKEAHARRGA 156 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~-~~~~~~~~g~ 156 (229)
++--++++++|+||+||||++|++.|.. .|..|-+.... +.++++ +.+... .. ++...+ +.+..+. +
T Consensus 387 ~e~~sRi~~vg~ng~gkst~lKi~~~~l---~~~rgi~~~~~--r~ri~~-f~Qhhv--d~--l~~~v~~vd~~~~~--~ 454 (582)
T KOG0062|consen 387 RESDSRISRVGENGDGKSTLLKILKGDL---TPTRGIVGRHP--RLRIKY-FAQHHV--DF--LDKNVNAVDFMEKS--F 454 (582)
T ss_pred cchhhhhheeccCchhHHHHHHHHhccC---Ccccceeeecc--cceecc-hhHhhh--hH--HHHHhHHHHHHHHh--C
Confidence 5567889999999999999999999988 78888643322 223333 111111 10 111111 1111111 1
Q ss_pred CCCccHHHHHHHHHhhhhcCC---CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 157 PWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~---~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+. ...+.+...+..++...+ ..+..||||||.||++|.....+|.+|+|||||+.||-+....+.+-+.
T Consensus 455 pG-~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 455 PG-KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred CC-CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 22 245677788888876543 4478899999999999999999999999999999999988777766553
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.50 E-value=2.7e-14 Score=117.39 Aligned_cols=45 Identities=9% Similarity=-0.123 Sum_probs=39.1
Q ss_pred CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
......||+||+|++.++.++ .+|+++++|||+.++|+.....+.
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~ 130 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALA 130 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHH
Confidence 345678999999999998775 899999999999999998877774
No 398
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.50 E-value=1.1e-13 Score=135.83 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=54.1
Q ss_pred HHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+.++.++.. .+.++.+|||||+||+.+|++++.+| +++|+|||+++||+.....+.++|..
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~ 878 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 34556655553 36788999999999999999999999 99999999999999999999988865
No 399
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.49 E-value=5.1e-14 Score=112.08 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=40.7
Q ss_pred CCccccchhhhhhhhhc----CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 183 FDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 183 lSgG~k~Rl~~a~al~~----~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+||++|+.++++++. .|+++|+|||+.++|+.....+.+.+.+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986 7899999999999999988888776643
No 400
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.49 E-value=2.6e-14 Score=129.69 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=86.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHH-----HHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE-----AHA 152 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~-----~~~ 152 (229)
|++|--+-|+||||||||.|+|+|.|+. +-..|..... ++....+++|.+|.--. +..+.+.+ -..
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLW---Pvy~g~L~~P---~~~~mFYIPQRPYms~g---tlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLW---PVYNGLLSIP---RPNNIFYIPQRPYMSGG---TLRDQIIYPDSSEQMK 575 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccC---cccCCeeecC---CCcceEeccCCCccCcC---cccceeecCCcHHHHH
Confidence 7899999999999999999999999986 3345543222 22233445555442211 11111111 112
Q ss_pred hcCCCCCccHHHHHHHHH--hhhh-c-----CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 153 RRGAPWTFNPLLLLNCLK--NLRN-Q-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 153 ~~g~~~~~~~~~~~~~l~--~l~~-~-----~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
..|+.+ .+...++..+. .+.. . ..-....||||+|||+++||.+-+.|+..++||.|++...+....+.+.
T Consensus 576 ~kg~~d-~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ 654 (728)
T KOG0064|consen 576 RKGYTD-QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQA 654 (728)
T ss_pred hcCCCH-HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHH
Confidence 334332 23333332221 1111 1 1233458999999999999999999999999999999988777676665
Q ss_pred HH
Q 026996 225 FD 226 (229)
Q Consensus 225 l~ 226 (229)
..
T Consensus 655 ak 656 (728)
T KOG0064|consen 655 AK 656 (728)
T ss_pred HH
Confidence 43
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=121.84 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=99.8
Q ss_pred hhhhhhhhcCCcc-------------cccCCeEEEEECCCCCcHHHHHHHHHHhhc-----ccCCCCccccCCCCCCCcE
Q 026996 64 SLKVLCSQRREIP-------------VVEARHIVGLAGPPGAGKSTLAAEVVRRIN-----KIWPQKASSFDSQVKPPDV 125 (229)
Q Consensus 64 ~~~~l~~~~~~~~-------------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~-----~~~p~~G~~~~~~~~~~~~ 125 (229)
++..+..+||..+ .+++|++++|+|+|||||||+|++|+|... ..+|++|.+-.... ..
T Consensus 379 e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n---t~ 455 (593)
T COG2401 379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN---TV 455 (593)
T ss_pred HHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc---ch
Confidence 4556777776552 388999999999999999999999999852 23577776322110 01
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC----CCCCCCCCccccchhhhhhhhhcCC
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~----~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
.. ...+.+-. .+.....++.+... .-|.....+++...+... ..+...||-|||.|+.+|.+++..|
T Consensus 456 ~a--~iPge~Ep--~f~~~tilehl~s~-----tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerp 526 (593)
T COG2401 456 SA--LIPGEYEP--EFGEVTILEHLRSK-----TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERP 526 (593)
T ss_pred hh--ccCccccc--ccCchhHHHHHhhc-----cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCC
Confidence 11 11221111 12211112222222 224445567777666532 3567799999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+++.||-.+.||+-....+..-+.+
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999877766665543
No 402
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=6.4e-13 Score=130.26 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=53.3
Q ss_pred HHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhc---CCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~---~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
..+.++.++.. .+.++.+||+||+||+.+|++++. +|+++|||||+++||+.....+.+++...
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34555555543 367788999999999999999986 58999999999999999999999988653
No 403
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.41 E-value=4.2e-13 Score=119.36 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=83.0
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
..-|++..+|.||.|||||+++++|.+ +|+.|.-+ +.-...+-.+ .... ...-++.+.+.. ..+..
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~---~pd~~~e~-----p~lnVSykpq-kisp-K~~~tvR~ll~~--kIr~a-- 430 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRL---KPDEGGEI-----PVLNVSYKPQ-KISP-KREGTVRQLLHT--KIRDA-- 430 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCC---CCCccCcc-----cccceecccc-ccCc-cccchHHHHHHH--HhHhh--
Confidence 355789999999999999999999998 89987411 0000110111 0100 000122222111 11110
Q ss_pred CccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 159 TFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
-.+...+.++.+-|.. ..+..+..||||+.||+++|..+-..+++++.|||.+.||.+.+......+
T Consensus 431 y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askvi 499 (592)
T KOG0063|consen 431 YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVI 499 (592)
T ss_pred hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHH
Confidence 0112223344443332 346778899999999999999999999999999999999998766554433
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.41 E-value=3.7e-13 Score=110.79 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=63.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+..|++++|+||||||||||+|+|++..- .+..|.+.... ... + ..+... ++ .+
T Consensus 25 ~l~~~~~~~l~G~Ng~GKStll~~i~~~~~--~~~~g~~~~~~-----~~~-i--~~~dqi---~~------------~~ 79 (202)
T cd03243 25 NLGSGRLLLITGPNMGGKSTYLRSIGLAVL--LAQIGCFVPAE-----SAS-I--PLVDRI---FT------------RI 79 (202)
T ss_pred EEcCCeEEEEECCCCCccHHHHHHHHHHHH--HHHcCCCcccc-----ccc-c--CCcCEE---EE------------Ee
Confidence 377899999999999999999999996540 22233211100 000 0 000000 00 00
Q ss_pred CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
.. ........+.++.++++ +..+.+.+.+|+++|+|||+.++|+.....+..
T Consensus 80 ~~--------------~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 80 GA--------------EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred cC--------------cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 00 00112233455666665 666677778999999999999999987766543
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.38 E-value=8.8e-13 Score=108.51 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..|++++|+||||||||||+|+|+|..
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 36778999999999999999999999976
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=1.8e-12 Score=111.74 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=41.5
Q ss_pred CCCccccchhhhhhhhhc----CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 182 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 182 ~lSgG~k~Rl~~a~al~~----~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.||+||+||+++|++++. .|+++|+|||+++||+..+..+.+++..
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~ 219 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE 219 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 599999999999987554 9999999999999999999999888765
No 407
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.37 E-value=1.8e-12 Score=106.14 Aligned_cols=111 Identities=23% Similarity=0.341 Sum_probs=73.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 162 (229)
++||+|+||||||||+++|++++ ......++..|+++... ...+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l----------------~~~~~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL----------------GNPKVVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------------CCCCeEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 58999999999999999999987 11223457778776432 221211111122344555666
Q ss_pred HHHHHHHHhhhhcCC--CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 163 LLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 163 ~~~~~~l~~l~~~~~--~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
+.+.+.+..+..... .+...+|.|++++..+ .+..++++|+|++++..++
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 777777777766543 4455667777665444 4578999999999999986
No 408
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.35 E-value=2e-12 Score=106.84 Aligned_cols=146 Identities=47% Similarity=0.832 Sum_probs=122.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
-+..+.+|+.|+.|+||||++..+.... |..-..+... ...+..++++|+|+.....++..++........|.+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~~f~~e--~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVNKFAQE--SINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhc----chhhhhhhhh--hcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 3457899999999999999999988753 4332222222 122566789999999988888999999999999999
Q ss_pred CCccHHHHHHHHHhhh--hcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhhC
Q 026996 158 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~~ 229 (229)
..++...+++.+..|. ...+.+++.+.+|-+.-+.--.-+....+|+|+++++++||++.|..+.++++++|
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~ 263 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY 263 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence 9999999999888888 46789999999999998877777778899999999999999999999999999875
No 409
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.31 E-value=2e-12 Score=105.88 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=95.4
Q ss_pred hhcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-Cccc-cCCCCC--------CCcEE---EEeecCCcc
Q 026996 70 SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASS-FDSQVK--------PPDVA---TVLPMDGFH 135 (229)
Q Consensus 70 ~~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-~G~~-~~~~~~--------~~~~g---~~i~~~~~~ 135 (229)
|+.+.. ..+..||+-||+|.+|||||-..|.|+|.....+-- .-.. +++-++ +.-+| .++.++...
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 333444 458999999999999999999999999987211111 1111 111111 01112 122233221
Q ss_pred ccCccCChhhhHHH-HHHh------cCC---CCCccHHHHHHHHHhhhhcC-----CCCCCCCCccccchhhhhhhhhcC
Q 026996 136 LYLSQLDAMEDPKE-AHAR------RGA---PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 136 ~~~~~l~~~~~~~~-~~~~------~g~---~~~~~~~~~~~~l~~l~~~~-----~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
. ++..+.+-. ..+. .|. -..+...+..+++..++... ..++.+|--||-|+|++|.|++..
T Consensus 101 C----LDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~Anq 176 (330)
T COG4170 101 C----LDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred h----cChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccC
Confidence 1 111111110 0000 010 11234456677777777543 346778899999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++||.|||+..+++..+.++..++..
T Consensus 177 PrLLIADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 177 PRLLIADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred CceEeccCCCcccCccHHHHHHHHHHH
Confidence 999999999999999999999988764
No 410
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.30 E-value=7.2e-12 Score=105.10 Aligned_cols=131 Identities=43% Similarity=0.716 Sum_probs=87.4
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEE-eecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~-i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
.+..++||+|+||||||||+++|++++ .++.|. ..+ +..|+++.... ...... .....+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l---~~~~g~-----------~~v~i~~D~~~~~~~---~~~~~g-~~~~~~~~ 92 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL---QQDGEL-----------PAIQVPMDGFHLDNA---VLDAHG-LRPRKGAP 92 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---hhccCC-----------ceEEEecccccCCHH---HHHhcc-cccccCCC
Confidence 467899999999999999999999999 566552 112 55666643321 000000 01123445
Q ss_pred CCccHHHHHHHHHhhhhcC-CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 158 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..++.....+.+..+.... ....+.|+......+.-...+....+++|+|+.++.+++..+..+.+++|.
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~ 163 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDF 163 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCE
Confidence 6677777788888777665 566777877776655433333336789999999999988777777766654
No 411
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.29 E-value=4.2e-12 Score=104.88 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=72.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
++|+++||+|+||||||||++.|++++ .+ ....++.+|+++.........+. ....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l---~~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL---GK-------------LEIVIISQDNYYKDQSHLEMAER---KKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh---cc-------------cCCeEecccccccChhhCCHHHh---cCCCCCCcc
Confidence 579999999999999999999999998 21 12234677776433211111110 001122234
Q ss_pred CccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
.++...+.+.++.+..+.....+.|+.....+.. ....+...+++|+|+.++.+++
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~ 120 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDE 120 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchH
Confidence 4555666777777776666667777654444421 1222367899999999888764
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3e-12 Score=114.51 Aligned_cols=60 Identities=15% Similarity=-0.016 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 163 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 163 ~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
.+...++..|++. .+++...||||-+.|+.+||||...|-+|+|||||.-||-.....+-
T Consensus 390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLd 452 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLD 452 (807)
T ss_pred hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehh
Confidence 3455666666654 46778899999999999999999999999999999999975544433
No 413
>PTZ00301 uridine kinase; Provisional
Probab=99.26 E-value=1.6e-11 Score=101.82 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=89.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCcc
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 161 (229)
-+|||.|++|||||||.+.|...+. -.. .+....++.+|+|+.....++..+ .....++.+..++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~---------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHC---------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhc---------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence 5899999999999999998876551 001 122344578888876553333221 1123556678889
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhhC
Q 026996 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~~ 229 (229)
...+.+.+..|..+....++.|+.....|..-.. .+..++|+|+|+.++..++ ++++++|.+|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~-~i~p~~ViIvEGi~~l~~~----~l~~l~D~~i 131 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAV-TMTPKSVLIVEGILLFTNA----ELRNEMDCLI 131 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCceE-EeCCCcEEEEechhhhCCH----HHHHhCCEEE
Confidence 9999999999988777888888877666654322 3367899999999997775 6777777553
No 414
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=1.9e-11 Score=100.93 Aligned_cols=126 Identities=28% Similarity=0.397 Sum_probs=96.1
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
++.-+|||.|++||||||+.+.|.-.+ ......++.+|+|+......+..++ ....+..+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~----------------~~~~~~~I~~D~YYk~~~~~~~~~~---~~~n~d~p~ 66 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL----------------GVEKVVVISLDDYYKDQSHLPFEER---NKINYDHPE 66 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh----------------CcCcceEeeccccccchhhcCHhhc---CCcCccChh
Confidence 345689999999999999999999998 2223455889998876554443222 123455688
Q ss_pred CccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+++.+.+.+.+..|..+.....+.||.-+..|..- ...+.+.+|+|+|+.++..|+ .++++++.+
T Consensus 67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~-~i~~~p~~VVIvEGi~~l~d~----~lr~~~d~k 131 (218)
T COG0572 67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPE-TIKVEPNDVVIVEGILLLYDE----RLRDLMDLK 131 (218)
T ss_pred hhcHHHHHHHHHHHHcCCcccccccchhcccccCC-ccccCCCcEEEEecccccccH----HHHhhcCEE
Confidence 89999999999999999888899999877777642 223367899999999999996 777777754
No 415
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.25 E-value=3.5e-11 Score=99.36 Aligned_cols=117 Identities=25% Similarity=0.390 Sum_probs=74.2
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
.++.+|+|.|+||||||||++.|++.+ ......++.+|+++.....++..+. ....++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l----------------~~~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL----------------GDESIAVIPQDSYYKDQSHLSFEER---VKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh----------------CCCceEEEeCCccccCcccCCHHHh---cccCccCcc
Confidence 467899999999999999999999987 2223344678877654322222111 111233455
Q ss_pred CccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
.++...+.+.+..+........+.|+.....+..-. ......+++|+|++++..++
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~ 120 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE 120 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence 667778888888777655555555543332222111 12356789999999998764
No 416
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=7.2e-12 Score=104.79 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=65.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
..++++++|.||||+|||||+++|+-..- ....|..+..+... +.
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~g~~vpa~~~~-----~~--------------- 71 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVL---------------MAQIGCFVPCDSAD-----IP--------------- 71 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHH---------------HHHhCCCcCcccEE-----Ee---------------
Confidence 56799999999999999999999985430 00111101100000 00
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhh--hcCCcEEEEcCC---cCCCChhhHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKD 220 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al--~~~~~illlDe~---~~~LD~~~~~~ 220 (229)
.+.+++..++.. +.....+|.|+++++.+++++ +.+|+++|+||| |+.+|......
T Consensus 72 ------~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~ 132 (222)
T cd03285 72 ------IVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW 132 (222)
T ss_pred ------ccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence 011112222222 122567899999999999998 889999999999 88899876544
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.22 E-value=5.1e-11 Score=118.02 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=101.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC----C-CcEEEEeecCCccccCccCChhhhHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----P-PDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~----~-~~~g~~i~~~~~~~~~~~l~~~~~~~~~ 150 (229)
++++|+.+-++||.||||||||+.|+|.+.+..-..|++ .+|... . ...++ ..+.+. ..+.+|+.+.+++.
T Consensus 137 ~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY-~~e~Dv--H~p~lTVreTldFa 213 (1391)
T KOG0065|consen 137 IIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAY-NSEQDV--HFPELTVRETLDFA 213 (1391)
T ss_pred eEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEe-cccccc--ccceeEEeehhhHH
Confidence 489999999999999999999999999875433444553 333222 1 22333 344444 33448999998887
Q ss_pred HHhcCCC---CCccHHH-----HHHHHHhhhhc-------CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 151 HARRGAP---WTFNPLL-----LLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 151 ~~~~g~~---~~~~~~~-----~~~~l~~l~~~-------~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
.+-.+.. ++....+ ...+++-++.. .+.-++-.|||||+||.++-+++.+++++.+||++.+||.
T Consensus 214 ~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDS 293 (1391)
T KOG0065|consen 214 ARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDS 293 (1391)
T ss_pred HhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccH
Confidence 7655431 1111222 12344444432 2345667999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 026996 216 GVWKDVSSMFD 226 (229)
Q Consensus 216 ~~~~~~~~ll~ 226 (229)
...-++.+.+.
T Consensus 294 sTal~iik~lr 304 (1391)
T KOG0065|consen 294 STAFQIIKALR 304 (1391)
T ss_pred HHHHHHHHHHH
Confidence 87777766554
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=2.1e-11 Score=100.69 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=63.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+..|++++|+||||+||||++|+|+++.- ....|..+ .... ..++..++
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~d~----------- 74 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIFNR----------- 74 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccChhh-----------
Confidence 67889999999999999999999998761 11122211 0000 00111111
Q ss_pred CCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhh
Q 026996 158 WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~ 217 (229)
++..++. ......+.||.|+++. ..+.+++.+++++|+|||+.++|+..
T Consensus 75 ----------I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 75 ----------LLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred ----------eeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 1111111 2345567889999864 56677778999999999999999864
No 419
>PRK05439 pantothenate kinase; Provisional
Probab=99.18 E-value=4.4e-11 Score=104.41 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=95.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 159 (229)
.--+|||.|+.|||||||.+.|..++. ... ......++.+|+|+.....+.. . ......|.|.+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~~--~--~l~~~kg~Pes 148 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLEE--R--GLMKRKGFPES 148 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHhh--h--hccccCCCccc
Confidence 456899999999999999999999872 110 0112445889999765432221 0 11124677889
Q ss_pred ccHHHHHHHHHhhhhcCC-CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh--hHHHHHHHHHhhC
Q 026996 160 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKW 229 (229)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~-~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~--~~~~~~~ll~~~~ 229 (229)
++...+.+.+..+..+.. ..++.||.-...++.-....+..++|+|+|+++.+.++. .+..+.+++|.+|
T Consensus 149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~I 221 (311)
T PRK05439 149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSI 221 (311)
T ss_pred ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEE
Confidence 999999999999988765 788888877776654333445789999999999876554 5777788877653
No 420
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=9.2e-11 Score=100.81 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=42.2
Q ss_pred CCCCCccccchhhhhhhhh---------cCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 180 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 180 ~~~lSgG~k~Rl~~a~al~---------~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
...+|+||++++.+|++++ .+|+++|+|||++.||+..+..+.+.+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~ 236 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIE 236 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhh
Confidence 4458999999999999975 6999999999999999999999988874
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.15 E-value=5.1e-11 Score=96.81 Aligned_cols=44 Identities=7% Similarity=-0.091 Sum_probs=32.4
Q ss_pred CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
....++||+|+++.. .+...+.+|+++|+|||+.++|+.....+
T Consensus 56 ~~~~s~fs~~~~~l~-~~l~~~~~~~llllDEp~~g~d~~~~~~~ 99 (185)
T smart00534 56 AQGLSTFMVEMKETA-NILKNATENSLVLLDELGRGTSTYDGVAI 99 (185)
T ss_pred hccccHHHHHHHHHH-HHHHhCCCCeEEEEecCCCCCCHHHHHHH
Confidence 445668888887643 33333459999999999999999866554
No 422
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.13 E-value=8e-11 Score=99.86 Aligned_cols=135 Identities=34% Similarity=0.594 Sum_probs=107.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
-+..-+|||.|+-|+||||+.+.+.-++.. +|. .+ ...++.+|||+..+..+.. .-.....|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~----------~~-~v~lvpmDGFhy~n~~L~~----~glm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSR-WPE----------SP-KVDLVTMDGFHYPNAVLDE----RGLMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhh-CCC----------CC-ceEEEeccccccCHhHhhh----ccccccCCCC
Confidence 445779999999999999999999998832 121 22 4566899999877644431 1233568999
Q ss_pred CCccHHHHHHHHHhhhhc-CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 158 WTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~-~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
..+|...+.+.+..+..+ .+..++.||+-..-.+.-+..++.+|+|+|++++..++|+..|..+-+++|..
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfS 214 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFS 214 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEE
Confidence 999999999999999854 45889999998888888888888999999999999999998877777776653
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.11 E-value=7.4e-11 Score=105.23 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=92.7
Q ss_pred hhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEE---eecCCcccc
Q 026996 68 LCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV---LPMDGFHLY 137 (229)
Q Consensus 68 l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~---i~~~~~~~~ 137 (229)
.+++|+.. ++..+|++.|++|-||-||||-+++++|-+ +|.-|.+........-.++. --+.++...
T Consensus 80 tthry~~n~fKlhrlp~prpg~vlglvgtngigkstAlkilagk~---kpnlg~~~~pp~w~~il~~frgselq~yftk~ 156 (592)
T KOG0063|consen 80 TTHRYSANSFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQ---KPNLGRYDNPPDWQEILTYFRGSELQNYFTKI 156 (592)
T ss_pred hhhhhcccceeeccCCCCCcchhccccccCcccHHHHHHHHhCCC---CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhh
Confidence 55666554 346789999999999999999999999999 89888754332221111110 001111000
Q ss_pred C-cc---CChhhhHHHHH-HhcC----CC-CCccHHHHHHHHH--hhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 138 L-SQ---LDAMEDPKEAH-ARRG----AP-WTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 138 ~-~~---l~~~~~~~~~~-~~~g----~~-~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
. .. ....+++.... ...+ .. ...+.....++.+ .|....++.+.++|||+.||.++|.+.+..+++.+
T Consensus 157 le~~lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 157 LEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred ccccccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeE
Confidence 0 00 01111111111 1111 00 0001111222222 23344567888999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHH
Q 026996 206 VDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~ 226 (229)
+|||.+.||...+.+....+.
T Consensus 237 FDEpSsYLDVKQRLkaA~~IR 257 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIR 257 (592)
T ss_pred ecCCcccchHHHhhhHHHHHH
Confidence 999999999877665554443
No 424
>PLN02796 D-glycerate 3-kinase
Probab=99.11 E-value=2.5e-10 Score=100.54 Aligned_cols=120 Identities=24% Similarity=0.364 Sum_probs=75.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChh--hhH-HHHHHhcCCCCC
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRGAPWT 159 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~--~~~-~~~~~~~g~~~~ 159 (229)
++||+|+||||||||++.|.+++ .+. | ...+. +.+|+++......... ++. ......+|.+..
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL---~~~-g---------~~~g~-IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgT 167 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLF---NAT-G---------RRAAS-LSIDDFYLTAADQAKLAEANPGNALLELRGNAGS 167 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---ccc-C---------CceeE-EEECCcccchhhHHHHHhhCcchhhhhcCCCCch
Confidence 49999999999999999999998 332 1 12344 6778876433211100 000 011223456667
Q ss_pred ccHHHHHHHHHhhh----hcCCCCCCCCCcc----ccchhhhhh--hhhcCCcEEEEcCCcCCCChh
Q 026996 160 FNPLLLLNCLKNLR----NQGSVYAPSFDHG----VGDPVEDDI--LVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 160 ~~~~~~~~~l~~l~----~~~~~~~~~lSgG----~k~Rl~~a~--al~~~~~illlDe~~~~LD~~ 216 (229)
++.....+.++.|. ......++.|+.. +..|..-.. .+...++|+|+++|+.+.-+.
T Consensus 168 hDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~ 234 (347)
T PLN02796 168 HDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPL 234 (347)
T ss_pred hHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCC
Confidence 78877787887776 3445667777644 344643321 233578999999999998653
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.10 E-value=2e-10 Score=95.43 Aligned_cols=32 Identities=13% Similarity=-0.080 Sum_probs=28.2
Q ss_pred cccchhhhhhhhhcCCcEEEEcCCcCCCChhh
Q 026996 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 186 G~k~Rl~~a~al~~~~~illlDe~~~~LD~~~ 217 (229)
-+.+|++++++++..+.++|+|||+.++|+..
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 34588899999999999999999999999864
No 426
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.09 E-value=1.3e-10 Score=96.44 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCCCccccchhhhhhhhh----cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 181 PSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ~~lSgG~k~Rl~~a~al~----~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+||||+.++++|..++ .+.+++|+||+.+.||+..+..+.+++.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~ 185 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKE 185 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 399999999998886653 57899999999999999999999998865
No 427
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.07 E-value=6.5e-10 Score=100.69 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=106.9
Q ss_pred cccchhhhhhhhhcC-------Cc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC----C---
Q 026996 59 VQNKTSLKVLCSQRR-------EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----P--- 122 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~-------~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~----~--- 122 (229)
+..++++++++..-. ++ +.|..|||+||.|-.|-|-+.|+..|+|+. +|.+|++ +.+... .
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr---~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR---KPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC---ccCCceEEECCEeccccCCHHH
Confidence 355556555443322 22 449999999999999999999999999998 8888995 444332 1
Q ss_pred ---CcEEEEeecCC-ccccCccCChhhhHHHHHHhcC-C-C-CCccHHHH----HHHHHhhhh---cCCCCCCCCCcccc
Q 026996 123 ---PDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRG-A-P-WTFNPLLL----LNCLKNLRN---QGSVYAPSFDHGVG 188 (229)
Q Consensus 123 ---~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~g-~-~-~~~~~~~~----~~~l~~l~~---~~~~~~~~lSgG~k 188 (229)
.-.++ ++.|- -+---..++..+|......... + . .-.++..+ .++++.+.. ....++..||||.+
T Consensus 331 ~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNq 409 (501)
T COG3845 331 RRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQ 409 (501)
T ss_pred HHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcce
Confidence 11222 21111 0001112566777554332211 0 0 01223333 334443332 34567889999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+-+||-+..+|++||+-.||-+||....+.+.+.+-+
T Consensus 410 QK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e 448 (501)
T COG3845 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448 (501)
T ss_pred ehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888876643
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.05 E-value=1.9e-10 Score=111.59 Aligned_cols=109 Identities=11% Similarity=0.075 Sum_probs=68.7
Q ss_pred ccCC-eEEEEECCCCCcHHHHHHHHHHh-hcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 78 VEAR-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 78 i~~G-eiigLiG~NGsGKSTLlr~L~Gl-~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+..+ ++++|.||||+|||||||+|+|. + .+..|- .+...... .+.... ....
T Consensus 318 l~~~~~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~-------------~Vpa~~~~----~~~~~d------~i~~ 371 (771)
T TIGR01069 318 LKFEKRVLAITGPNTGGKTVTLKTLGLLAL---MFQSGI-------------PIPANEHS----EIPYFE------EIFA 371 (771)
T ss_pred eCCCceEEEEECCCCCCchHHHHHHHHHHH---HHHhCC-------------CccCCccc----cccchh------heee
Confidence 5555 89999999999999999999998 4 333331 11111000 000000 0000
Q ss_pred CCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH-HHHH
Q 026996 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 226 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~-~ll~ 226 (229)
... +.. . ......+||++|+++..++..+ ..+.++|+|||+.++|+.....+. .++.
T Consensus 372 ~i~--~~~---s--------i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe 429 (771)
T TIGR01069 372 DIG--DEQ---S--------IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE 429 (771)
T ss_pred ecC--hHh---H--------HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 000 000 1 1233667999999998887776 789999999999999998877773 4443
No 429
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.05 E-value=7e-10 Score=90.37 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=80.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 162 (229)
+|+|.|++|||||||.+.|+..+ . ...++.+|+|+.....+..... ....++.+..++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~----------------~--~~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL----------------P--NCCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc----------------C--CCeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 58999999999999999999876 1 1234788888766543332111 1124555778888
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCccccchhh-------------hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhhC
Q 026996 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~-------------~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~~ 229 (229)
..+.+.+..+......+...++.+...... -+.......+++|+|++++..++ .+.+++|.+|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 888899998887655444545544322110 11223467889999999988876 5667777654
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.05 E-value=2.8e-10 Score=94.18 Aligned_cols=50 Identities=6% Similarity=-0.099 Sum_probs=42.5
Q ss_pred CCCCCCcc--ccchhhhhhhhhcCCcEEEEcCCc-----CCCChhhHHHHHHHHHhh
Q 026996 179 YAPSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 179 ~~~~lSgG--~k~Rl~~a~al~~~~~illlDe~~-----~~LD~~~~~~~~~ll~~~ 228 (229)
..+..+++ +++++.+|++++.+|+++++|||+ ++||+...+++.+++...
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 34445555 777899999999999999999999 999999999999988654
No 431
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.03 E-value=1.1e-09 Score=94.24 Aligned_cols=114 Identities=27% Similarity=0.389 Sum_probs=67.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC----CC
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW 158 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~----~~ 158 (229)
++||+|+||||||||+++|++++ .+ ..+.++..|+++.. ...+ ....+. +.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll---~~-------------~~~~vi~~Dd~~~~----~~~~-----r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF---GS-------------DLVTVICLDDYHSL----DRKG-----RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh---CC-------------CceEEEECcccccC----CHHH-----HHHhhccccccc
Confidence 58999999999999999999998 22 33445666765422 1111 011121 22
Q ss_pred CccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+...+.+.+..+........+.|+.-...... ...+...+++|+|++++..++ .+++++|.
T Consensus 56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~----~l~~~~D~ 118 (273)
T cd02026 56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE----RVRELLDF 118 (273)
T ss_pred chhHHHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch----hhhhhccE
Confidence 2334445556666666555555666544332111 012356799999999987775 44555544
No 432
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.00 E-value=2e-09 Score=96.83 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=74.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHH--------HH
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HA 152 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~--------~~ 152 (229)
--+|||.|++|||||||++.|.+++ ++. | ...+. +.+|+|+.... +..... ..
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL---~~~-g---------~~vgv-ISiDDfYLt~e-----er~kL~~~nP~n~LL~ 272 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLF---RVT-G---------RKSAT-LSIDDFYLTAE-----GQAELRERNPGNALLE 272 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh---ccc-C---------CceEE-EEECCccCChH-----HHHHHHhhCccchhhc
Confidence 3789999999999999999999998 332 1 12444 67888874321 111111 11
Q ss_pred hcCCCCCccHHHHHHHHHhhh----hcCCCCCCCCCc----cccchhhhhh--hhhcCCcEEEEcCCcCCCChhh
Q 026996 153 RRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDDI--LVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 153 ~~g~~~~~~~~~~~~~l~~l~----~~~~~~~~~lSg----G~k~Rl~~a~--al~~~~~illlDe~~~~LD~~~ 217 (229)
..|.+..++.....+.++.+. .+....++.|+. |+..|+.... .+...++|+|+++|+.+.-+..
T Consensus 273 ~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~ 347 (460)
T PLN03046 273 LRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLP 347 (460)
T ss_pred ccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCC
Confidence 234556677766666676663 344556666664 4455654422 2336779999999999986533
No 433
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.00 E-value=1.8e-10 Score=94.11 Aligned_cols=127 Identities=31% Similarity=0.502 Sum_probs=79.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCC-cEEEEeecCCccccCccCChhhhHHHH--HHhcCCCCC
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWT 159 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~-~~g~~i~~~~~~~~~~~l~~~~~~~~~--~~~~g~~~~ 159 (229)
+|||.|++|||||||.+.|...++ . .|. .. ....++..++++... ......... ...+..+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~-------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a 66 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGI-------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDA 66 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTT-------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCc-------CccceeEEEeeccccccc---chhhHhhccccccCCCCccc
Confidence 689999999999999999999982 1 110 00 012234566654221 111110000 001233567
Q ss_pred ccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
++...+.+.+..|..+....++.|+.....+.. ...+..+++|+|+|+.++++|+. +++++|.+
T Consensus 67 ~d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ 130 (194)
T PF00485_consen 67 FDFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLK 130 (194)
T ss_dssp BSHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEE
T ss_pred cCHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeE
Confidence 788888888898888777777778776666554 22334689999999999999974 56666544
No 434
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.98 E-value=7e-10 Score=103.45 Aligned_cols=116 Identities=26% Similarity=0.428 Sum_probs=78.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCcc
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 161 (229)
-+|||.||||||||||++.|++.+ . ..+ ++.+|+|+... .. ....+..+..++
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL----------------p-~vg-vIsmDdy~~~~------~~---i~~nfD~P~a~D 118 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM----------------P-SIA-VISMDNYNDSS------RI---IDGNFDDPRLTD 118 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC----------------C-CcE-EEEEcceecch------hh---hCccCCChhhcc
Confidence 589999999999999999999987 1 223 36778774211 00 001122344455
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhhC
Q 026996 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~~ 229 (229)
...+.+.+..|..+....++.|+.-...|..-....+...+|+|+|+.++..+ ++++++|.+|
T Consensus 119 ~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkI 181 (656)
T PLN02318 119 YDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRV 181 (656)
T ss_pred hhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEE
Confidence 56666777778777777778887766666532223346899999999999752 6777777653
No 435
>PLN02348 phosphoribulokinase
Probab=98.89 E-value=3.1e-09 Score=95.07 Aligned_cols=137 Identities=22% Similarity=0.287 Sum_probs=81.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhccc-C-CCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKI-W-PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~-~-p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+--+|||.|++|||||||.+.|+..++.. . |..|.. ..+........++.+|+|+.... ..... .......+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~-~~~~l~~~~~~VI~lDDYh~~dr--~~r~~---~g~t~ldP 121 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNP-DSNTLISDTTTVICLDDYHSLDR--TGRKE---KGVTALDP 121 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccc-cccccccCceEEEEcccccCCCh--hhHhh---cCCccCCc
Confidence 34589999999999999999999998310 0 111100 00111223456789999875421 11000 00001124
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
...+...+.+.+..|..+.....+.|+.-...+.. . ..+..++|+|+|+.+..+|+ .+++++|.+
T Consensus 122 ~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~-~-e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~ 186 (395)
T PLN02348 122 RANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP-P-ELIEPPKILVIEGLHPMYDE----RVRDLLDFS 186 (395)
T ss_pred ccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC-c-EEcCCCcEEEEechhhccCc----cccccCcEE
Confidence 45566677888888887766666766654443321 1 23467899999999999886 445555543
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.87 E-value=8.2e-09 Score=87.75 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=31.6
Q ss_pred hhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 70 ~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+....+.+|++++|+|++|+|||||++.|++.+
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444555679999999999999999999999999987
No 437
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.86 E-value=7e-09 Score=86.40 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++++|+||||+|||||+|+|++..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999999865
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.86 E-value=2e-08 Score=92.48 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=73.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+.+|.+++|+||||+||||++..|++.+ .+..| ..+++ ++..|.+. ....+++..+....++
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~---~~~~G--------~~kV~-LI~~Dt~R-----igA~EQLr~~AeilGV 314 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARC---VMRHG--------ASKVA-LLTTDSYR-----IGGHEQLRIYGKILGV 314 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHH---HHhcC--------CCeEE-EEeCCccc-----hhHHHHHHHHHHHhCC
Confidence 36789999999999999999999999987 45554 22344 35566542 4677888887777776
Q ss_pred CCC--ccHHHHHHHHHhhhhcCCCCCCCCCccccchh---hhhhhhhcCC-----cEEEEcCCcCCCC
Q 026996 157 PWT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQH-----KVVIVDGNYLFLD 214 (229)
Q Consensus 157 ~~~--~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl---~~a~al~~~~-----~illlDe~~~~LD 214 (229)
+.. .+.......+..+.......+.+ .|+.++. .....++.++ .+|++|..+...+
T Consensus 315 pv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~ 380 (484)
T PRK06995 315 PVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT 380 (484)
T ss_pred CeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH
Confidence 432 22223333344444444455666 4444433 2233333333 6788888776643
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.85 E-value=4e-09 Score=85.36 Aligned_cols=120 Identities=24% Similarity=0.339 Sum_probs=74.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 162 (229)
+++|.|++|||||||.+.|...+. ..| ....++.+|+|+... ... . ........+..++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~----~~~----------~~~~~i~~Ddf~~~~--~~~--~--~~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR----VNG----------IGPVVISLDDYYVPR--KTP--R--DEDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH----HcC----------CCEEEEehhhcccCc--ccc--c--ccCCCCCCCccccH
Confidence 579999999999999999999872 111 123457888887543 010 0 00011112222466
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+.+.+..+........+.|+.-...+..-....+...+++|+|++++..+ +++++++.
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~ 120 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDI 120 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCE
Confidence 7777777777766666666676555555432222346789999999999753 45555543
No 440
>PRK07429 phosphoribulokinase; Provisional
Probab=98.84 E-value=8.9e-09 Score=90.80 Aligned_cols=116 Identities=26% Similarity=0.423 Sum_probs=68.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC----C
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----P 157 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~----~ 157 (229)
-+|||.|+||||||||++.|++++ ....+.++..|+++.. +..+ ....+. +
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll----------------~~~~~~vi~~Dd~~~~----~~~~-----r~~~g~~~l~p 63 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLL----------------GEELVTVICTDDYHSY----DRKQ-----RKELGITALDP 63 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHh----------------ccCceEEEEecccccC----CHHH-----HHhcCCcccCc
Confidence 489999999999999999999998 2233445667776421 1111 112222 2
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
...+...+.+.++.+........+.|......... . ..+...+++|+|++++.+++ .+++++|.+
T Consensus 64 ~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~-~-~~i~p~~iVIvEG~~~l~~~----~lr~~~D~~ 128 (327)
T PRK07429 64 RANNLDIMYEHLKALKTGQPILKPIYNHETGTFDP-P-EYIEPNKIVVVEGLHPLYDE----RVRELYDFK 128 (327)
T ss_pred cchHHHHHHHHHHHHHCCCceecceeecCCCCcCC-c-EecCCCcEEEEechhhcCcH----hHHhhCCEE
Confidence 23334555666666666554444444433222211 0 12255789999999988775 455555543
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.83 E-value=1.6e-08 Score=85.06 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=33.8
Q ss_pred hhhhhhhhhcCCcccccCCeEEEEECCCCCcHHHH-HHHHHHhh
Q 026996 63 TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTL-AAEVVRRI 105 (229)
Q Consensus 63 ~~~~~l~~~~~~~~~i~~GeiigLiG~NGsGKSTL-lr~L~Gl~ 105 (229)
+.+.++.+.+++- +++|+++.|.|+|||||||| ++++++..
T Consensus 8 ~~~~~ld~~l~gg--i~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 8 LSRDELHKRLGGG--IPAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEeeeehhhCCC--CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455666777654 89999999999999999999 68999876
No 442
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.82 E-value=1.2e-08 Score=87.78 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
.-++|+||||||||||+++|+|++ .|++|++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i 142 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL---STGISQL 142 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc---CCCCceE
Confidence 567999999999999999999999 7777753
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.79 E-value=1.1e-08 Score=85.60 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=32.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~ 118 (229)
+.+|++++|.||||+||||++++|++.. +.++.|.+.+.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~--~la~~G~~v~a 66 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALIT--IMAQIGSFVPA 66 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHH--HHHhCCCEEEc
Confidence 6789999999999999999999999943 16777764443
No 444
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.78 E-value=3.3e-08 Score=94.35 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=46.7
Q ss_pred CCCCCCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 176 GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 176 ~~~~~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
.-.+..+|||||-||+-+|.-|.... -++||||||.+|-..-.+++.+.++..
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL 871 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 34677899999999999999998887 899999999999998888888877654
No 445
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.75 E-value=4.7e-09 Score=102.14 Aligned_cols=44 Identities=11% Similarity=-0.081 Sum_probs=38.6
Q ss_pred CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH
Q 026996 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 178 ~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~ 222 (229)
...++||++|++++.+++++ ..+.++|+|||+.++|+.....+.
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence 45678999999999999988 799999999999999998766664
No 446
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.73 E-value=7.9e-08 Score=82.06 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=79.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHH---HhcCC--C
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 157 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~---~~~g~--~ 157 (229)
++||.|.+||||||+.+.|...+.. . .....++..|.|+.+.. ....+...... .+... |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~----~----------g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR----E----------GIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh----c----------CCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence 5899999999999999999988721 1 11245578888876421 12211111111 12333 6
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCc------------cccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSg------------G~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
.+.+.+.+.+.+..++.......+.|.. |...- - ..+....+++|+++.+.++.-. ...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~--~-~~~~~p~dvIivEGLhg~~~~~-~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTP--W-EDLPEDTDLLFYEGLHGGVVTE-GYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCC--c-ccccCCCcEEEECCCCcccccc-cHHHHHhC
Confidence 7788888899999998877777777743 32221 0 1123789999999998544311 13667766
Q ss_pred Hhh
Q 026996 226 DEK 228 (229)
Q Consensus 226 ~~~ 228 (229)
|.+
T Consensus 142 Dlk 144 (277)
T cd02029 142 DLL 144 (277)
T ss_pred CeE
Confidence 654
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.69 E-value=3.5e-08 Score=89.74 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=74.7
Q ss_pred hcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHH
Q 026996 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (229)
Q Consensus 71 ~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~ 150 (229)
..+..+.+.+|++++|+|+||+|||||+++|++.. +|+. +. +...+... .++.+.+...
T Consensus 146 aID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~~~-------------gv-I~~iGerg----~ev~e~~~~~ 204 (432)
T PRK06793 146 SIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA---KADI-------------NV-ISLVGERG----REVKDFIRKE 204 (432)
T ss_pred EEeccceecCCcEEEEECCCCCChHHHHHHHhccC---CCCe-------------EE-EEeCCCCc----ccHHHHHHHH
Confidence 34455669999999999999999999999999988 4443 33 22222210 1233322211
Q ss_pred HHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhh-------cCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~-------~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
....++... -.-......|.+++.|++.+.+.+ ..+-++++|++|...|.. +++..
T Consensus 205 l~~~gl~~t---------------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl 267 (432)
T PRK06793 205 LGEEGMRKS---------------VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI 267 (432)
T ss_pred hhhccccee---------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH
Confidence 111111100 001445678899999999988876 689999999999999973 44443
Q ss_pred H
Q 026996 224 M 224 (229)
Q Consensus 224 l 224 (229)
+
T Consensus 268 ~ 268 (432)
T PRK06793 268 A 268 (432)
T ss_pred H
Confidence 3
No 448
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=4e-08 Score=96.89 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=48.2
Q ss_pred CCCCCCCCCccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 176 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 176 ~~~~~~~lSgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
.+.++.+|||||+||+.+|++++.+| +++|||||+++||+.....+.+++...
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L 535 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL 535 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999886 899999999999999999999988653
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=2.3e-07 Score=75.02 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=38.6
Q ss_pred CCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 179 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 179 ~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.....|+||-----+.+.+ ...-|+|||||-++|.+.-|.++...+..
T Consensus 126 sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~ 173 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRD 173 (233)
T ss_pred chhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHH
Confidence 3557799997765566666 78999999999999999888888777654
No 450
>PRK13695 putative NTPase; Provisional
Probab=98.63 E-value=2.3e-08 Score=80.16 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=35.8
Q ss_pred CCCCCccccchhhhhhhhhcCCcEEEEcC--CcCCCChhhHHHHHHHH
Q 026996 180 APSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 180 ~~~lSgG~k~Rl~~a~al~~~~~illlDe--~~~~LD~~~~~~~~~ll 225 (229)
+..+|++++.+..+++.....|+++++|| ++-.+|+...+.+.+++
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~ 123 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL 123 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence 44688999999888888878999999999 66677766666665555
No 451
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.62 E-value=3.9e-08 Score=97.14 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=51.7
Q ss_pred HHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.++.++.. .+.++.+|||||+||+.+|++|+..| +++|||||+++||+....++.+++..
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~ 536 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKH 536 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHH
Confidence 34444443 46789999999999999999999887 99999999999999999999998865
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=1.6e-07 Score=85.25 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=60.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+.+|++++|+||||+||||+++.|++.+ .-..| . ..+.++..|.+. ....+.+.......++
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~---~~~~~--------~-~~v~~i~~d~~r-----igalEQL~~~a~ilGv 249 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA---VIRHG--------A-DKVALLTTDSYR-----IGGHEQLRIYGKLLGV 249 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH---HHhcC--------C-CeEEEEecCCcc-----hhHHHHHHHHHHHcCC
Confidence 46789999999999999999999999964 11111 1 223335566653 2455666666677776
Q ss_pred CCC--ccHHHHHHHHHhhhhcCCCCCCCCCccccchhh
Q 026996 157 PWT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 157 ~~~--~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~ 192 (229)
+.. .+.......+..+.......+.+ .|+.+|..
T Consensus 250 p~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 250 SVRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred ceecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 532 33344444555555444445555 58887643
No 453
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.60 E-value=1.5e-07 Score=76.51 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=32.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
++.|+.++|+|+||||||||+++|+|++ .|+.|.+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i---~~~~~~i 56 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFI---PPDERII 56 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhc---CCCCCEE
Confidence 8899999999999999999999999998 7887774
No 454
>COG4240 Predicted kinase [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=78.95 Aligned_cols=125 Identities=31% Similarity=0.469 Sum_probs=88.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCcc-CChhhhHHHHHHhcCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ-LDAMEDPKEAHARRGA 156 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~-l~~~~~~~~~~~~~g~ 156 (229)
..+.-++||.||-||||||+.-.|-.++. .-.| ...++ +..|+++..... +...++..-..+-.|.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~---~kg~---------ert~~-lSLDDlYlthadrl~La~q~npllq~RGl 113 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGL---------ERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL 113 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHH---Hhcc---------cceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence 45577999999999999999999988872 1111 13344 678888754421 1111111222345688
Q ss_pred CCCccHHHHHHHHHhhhhc-CCCCCCCCCc----cccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 157 PWTFNPLLLLNCLKNLRNQ-GSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~-~~~~~~~lSg----G~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
+...|.....++++.+..+ ....++.|+. |...|..-...+..+.+|+|+++|+.+.-+
T Consensus 114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 8889988889999977654 3467888886 888887666666677999999999998765
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=3.1e-07 Score=68.76 Aligned_cols=25 Identities=40% Similarity=0.840 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+..+.|+||+|+||||+++.|+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 6788999999999999999999987
No 456
>PRK15453 phosphoribulokinase; Provisional
Probab=98.49 E-value=1.1e-06 Score=75.72 Aligned_cols=132 Identities=18% Similarity=0.129 Sum_probs=74.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccC-ccCChhhhHHHHHH---hcC
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEAHA---RRG 155 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~-~~l~~~~~~~~~~~---~~g 155 (229)
+.-+|+|.|.+||||||+.+.|+..+.. ......++..|+|+.+. ..+.. ......+ .+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 4568999999999999999999987721 01124457788887532 11111 1111111 222
Q ss_pred C--CCCccHHHHHHHHHhhhhcCCCCCCCCCcc--c---cchhh-h---hhhhhcCCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 156 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--V---GDPVE-D---DILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 156 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG--~---k~Rl~-~---a~al~~~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
. +.+.+.+.+.+.+..++.......+.|..- + ..|.. . -..+....+++|+++.+.++.. ....++++
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~-~~~~lr~~ 146 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVT-DQVDVAQH 146 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccccc-ccHHHHHh
Confidence 3 667788888888888876554444444311 1 00000 0 0012246899999999877431 11355555
Q ss_pred HHhh
Q 026996 225 FDEK 228 (229)
Q Consensus 225 l~~~ 228 (229)
+|.+
T Consensus 147 ~Dlk 150 (290)
T PRK15453 147 VDLL 150 (290)
T ss_pred CCee
Confidence 5543
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.48 E-value=9.4e-08 Score=87.37 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=32.6
Q ss_pred hhcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 70 SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 70 ~~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
....++ ..+++||+++|+|||||||||||+ +|+. .|++|.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~---~~~sGg 60 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR---KFSEGY 60 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC---CCCCCC
Confidence 334454 559999999999999999999999 6776 788883
No 458
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.48 E-value=2e-08 Score=82.72 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=38.8
Q ss_pred CCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 180 APSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 180 ~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
...+|.|+++.+.++.++.... .++++|||-+.|.+..+..+.+++..
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~ 284 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE 284 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence 3456999999988887776665 89999999999999999999998854
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.48 E-value=1.2e-07 Score=70.28 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVV 102 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~ 102 (229)
+.+++|++++|+||||||||||++++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 348899999999999999999999986
No 460
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.46 E-value=2.3e-07 Score=96.21 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCCCCCCCCccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 176 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 176 ~~~~~~~lSgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+..+.+|||||+||+.+|++++.+| +++|||||+++||+...+.+.+++..
T Consensus 470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~ 523 (1809)
T PRK00635 470 PERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKK 523 (1809)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHH
Confidence 35778899999999999999999999 89999999999999999999988865
No 461
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.37 E-value=1.2e-06 Score=70.34 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=37.2
Q ss_pred CCCCCCCCCccccc------hhhhhhhhhcCCcEEEEcCCcCCCC---hhhHHHHHHHHH
Q 026996 176 GSVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFD 226 (229)
Q Consensus 176 ~~~~~~~lSgG~k~------Rl~~a~al~~~~~illlDe~~~~LD---~~~~~~~~~ll~ 226 (229)
.+.....+|+|+++ ......+...+|+++++|+|++.+| ......+.+++.
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~ 124 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLF 124 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHH
Confidence 35666778999887 4444444567899999999999999 655566665554
No 462
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.34 E-value=3.8e-07 Score=76.11 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=25.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|++++|.||||+||||+++++++..
T Consensus 27 ~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 27 ATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred ecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 5678999999999999999999999875
No 463
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=1.9e-06 Score=66.93 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.|.|+||+||||+++.+++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999987
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.31 E-value=9.5e-07 Score=58.90 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.6
Q ss_pred cc-CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VE-ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~-~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+. .|+++.|.|+|||||||++..|.=.+
T Consensus 19 ~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 19 FDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred ecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44 36799999999999999999998877
No 465
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.31 E-value=3.1e-06 Score=70.98 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=63.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHH-HhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~-Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
+++|.++.|.|++|+|||||...++ +.. + .| ..+.++..+. +..+.... ....++
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~--~g----------~~~~y~~~e~--------~~~~~~~~-~~~~g~ 77 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGAL---K--QG----------KKVYVITTEN--------TSKSYLKQ-MESVKI 77 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHH---h--CC----------CEEEEEEcCC--------CHHHHHHH-HHHCCC
Confidence 8899999999999999999998885 322 1 12 2333333321 11121111 122332
Q ss_pred CCCccHHHHHHHHHhhhhc-C-CCCCCCCCccccchhhhhhhhhc--CCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 157 PWTFNPLLLLNCLKNLRNQ-G-SVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~-~-~~~~~~lSgG~k~Rl~~a~al~~--~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
+...... ...+... . -......+.++++.+......+. +|+++++|++++.+|......+.++
T Consensus 78 ----~~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~ 144 (234)
T PRK06067 78 ----DISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF 144 (234)
T ss_pred ----ChhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence 1111100 0011110 0 01122345677788888777776 9999999999976554333334443
No 466
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.30 E-value=5.6e-07 Score=72.62 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|++++|+|+||||||||+++|++++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999998
No 467
>PRK07667 uridine kinase; Provisional
Probab=98.30 E-value=1.1e-06 Score=71.78 Aligned_cols=106 Identities=17% Similarity=0.308 Sum_probs=60.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC---
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--- 157 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~--- 157 (229)
.-+|||-|+.||||||+.+.|...++ ..| ....++..|+++..... ....+..
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~----~~~----------~~~~~i~~Dd~~~~~~~----------~~~~~~~~~~ 72 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMK----QEG----------IPFHIFHIDDYIVERNK----------RYHTGFEEWY 72 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH----hCC----------CcEEEEEcCcccchhhh----------HHhcCCCchh
Confidence 36899999999999999999999872 111 12234677776532210 0011111
Q ss_pred ----CCccHHHHH-HHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 158 ----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 158 ----~~~~~~~~~-~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
..++...+. .++..+........+.|+.-...+..-... +..++++|+|+|++
T Consensus 73 ~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l 130 (193)
T PRK07667 73 EYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL 130 (193)
T ss_pred hhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence 112333332 345566555455556666555443321111 24579999999995
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.29 E-value=4.7e-07 Score=73.46 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|++++|+||||||||||+|+|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999999987
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.26 E-value=8.7e-07 Score=72.62 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++|++++|+||+|||||||+++|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999987
No 470
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=1.1e-05 Score=72.45 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=42.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+.+|.+++|+||||+||||++..|++.+ ....| ...++ ++..|.|. ....+.+..+....+.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~---~~~~G--------~~~V~-lit~D~~R-----~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARC---VMRFG--------ASKVA-LLTTDSYR-----IGGHEQLRIFGKILGV 195 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHH---HHhcC--------CCeEE-EEeccccc-----ccHHHHHHHHHHHcCC
Confidence 37789999999999999999999999875 11112 12233 35555552 2445566655566665
Q ss_pred C
Q 026996 157 P 157 (229)
Q Consensus 157 ~ 157 (229)
+
T Consensus 196 ~ 196 (374)
T PRK14722 196 P 196 (374)
T ss_pred c
Confidence 3
No 471
>PRK06696 uridine kinase; Validated
Probab=98.22 E-value=1.1e-06 Score=73.37 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.--+|||.|++|||||||.+.|+..+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999999988
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.17 E-value=2e-05 Score=69.45 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|++++|+||||+||||++..|++.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999999998
No 473
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.15 E-value=5e-05 Score=64.61 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=23.8
Q ss_pred ccC-CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEA-RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~-GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++ +.++.|.|+||+|||||++.+...+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 344 3488999999999999999999876
No 474
>PRK08233 hypothetical protein; Provisional
Probab=98.14 E-value=1.2e-05 Score=64.19 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+|+|.|++|||||||.+.|+..+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999999987
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.11 E-value=1.1e-05 Score=66.23 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.|.||+||||||+++.|.+.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998887
No 476
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.09 E-value=2e-05 Score=75.28 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCC
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 159 (229)
....+.|+||||+|||||+++|.+.. .+..|..+. .... ++.+++.... .+..+ + .....+....
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~---~~~~~~~~~-----~~~~-fv~i~~~~l~---~d~~~-i--~~~llg~~~~ 238 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEA---KKLKHTPFA-----EDAP-FVEVDGTTLR---WDPRE-V--TNPLLGSVHD 238 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhh---hhccCCccc-----CCCC-eEEEechhcc---CCHHH-H--hHHhcCCccH
Confidence 34568999999999999999999987 555443110 0111 1222222110 01000 0 0011111110
Q ss_pred ccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 160 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 160 ~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.........+...+. .....+..+||| +|++|| +..||+..+..+.+.++.
T Consensus 239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 001112222333222 223344566666 899999 799999999999998864
No 477
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.09 E-value=2.6e-06 Score=80.19 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=43.8
Q ss_pred CCCCCCccccchhhhhhhhh----------cCCcEEEEcCCc-CCCChhhHHHHHHHHHh
Q 026996 179 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 179 ~~~~lSgG~k~Rl~~a~al~----------~~~~illlDe~~-~~LD~~~~~~~~~ll~~ 227 (229)
++..||+||+||+++|++++ .+|+++|+|||+ ++||......+.+++..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 45789999999999999887 589999999998 78999999999888764
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.09 E-value=2.8e-06 Score=68.16 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|++++|+|+||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999987
No 479
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.08 E-value=1.8e-06 Score=78.69 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=34.1
Q ss_pred hhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC
Q 026996 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 112 (229)
Q Consensus 70 ~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~ 112 (229)
++.++.+.+.+|++++|+|+||+|||||+++|+|+. .++.
T Consensus 144 ~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~---~~dv 183 (434)
T PRK07196 144 NAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT---QADV 183 (434)
T ss_pred eeccceEeEecceEEEEECCCCCCccHHHHHHhccc---CCCe
Confidence 344556669999999999999999999999999988 6664
No 480
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=2e-06 Score=78.53 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=33.6
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
..+.+|++++|+|+||||||||+++|+++. .|+.|.+
T Consensus 160 ~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv 196 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVI 196 (450)
T ss_pred ceecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeee
Confidence 348999999999999999999999999998 8888874
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.07 E-value=2.6e-06 Score=68.34 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|++++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999975
No 482
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.06 E-value=3.5e-05 Score=59.63 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=30.0
Q ss_pred CCCCCccccchhhhhhhh-----hcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 180 APSFDHGVGDPVEDDILV-----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 180 ~~~lSgG~k~Rl~~a~al-----~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
...++.++.++....... ...++++ |++.+|.....++.+.+...
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 445677776665544432 2345555 88999999988988887653
No 483
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=4.7e-06 Score=84.06 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=47.6
Q ss_pred cCCCCCCCCCccccchhhhhhhhhc----------CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 175 QGSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 175 ~~~~~~~~lSgG~k~Rl~~a~al~~----------~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....++.+|||||+.|+++|++++. +|++||+||||.+||+.....+.+.|..
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~ 1005 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDA 1005 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999985 7999999999999999999999888865
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=1.6e-05 Score=76.95 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=49.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+.+|++++|+||||+||||++..|++.+ ....| ..++ .++..|.|. ....+.+.......+++
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~---~~~~G--------~kkV-~lit~Dt~R-----igA~eQL~~~a~~~gvp 244 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARC---VAREG--------ADQL-ALLTTDSFR-----IGALEQLRIYGRILGVP 244 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhH---HHHcC--------CCeE-EEecCcccc-----hHHHHHHHHHHHhCCCC
Confidence 5578999999999999999999999987 34443 1122 234455442 23445555555666653
Q ss_pred C--CccHHHHHHHHHhhh
Q 026996 158 W--TFNPLLLLNCLKNLR 173 (229)
Q Consensus 158 ~--~~~~~~~~~~l~~l~ 173 (229)
. ..+...+.+.++.+.
T Consensus 245 v~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 245 VHAVKDAADLRFALAALG 262 (767)
T ss_pred ccccCCHHHHHHHHHHhc
Confidence 3 234444555555544
No 485
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.02 E-value=2.7e-06 Score=74.95 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=35.8
Q ss_pred hhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 70 ~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
+.++..+.+.+|++++|+|+||+|||||+++|++.. .|+.|.
T Consensus 58 ~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~~~~v 99 (326)
T cd01136 58 RAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGT---TADVNV 99 (326)
T ss_pred EEEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCC---CCCEEE
Confidence 344555669999999999999999999999999998 777665
No 486
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.98 E-value=5.8e-06 Score=83.37 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=47.9
Q ss_pred cCCCCCCCCCccccchhhhhhhhhc--------CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 175 QGSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 175 ~~~~~~~~lSgG~k~Rl~~a~al~~--------~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....++..|||||+++++++++|+. +|++||+||||.+||+.....+++.|..
T Consensus 942 ~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~ 1002 (1047)
T PRK10246 942 DAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDA 1002 (1047)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 3457889999999999999999985 8999999999999999999999988764
No 487
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.97 E-value=6.9e-06 Score=77.66 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=42.4
Q ss_pred CCCCccccchhhhhhhhhcC----CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 181 PSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ~~lSgG~k~Rl~~a~al~~~----~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..|||||++|+++|++++.. |+++|+|||++++|......+.+++..
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~ 489 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQ 489 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999875 699999999999999999999988765
No 488
>PRK05922 type III secretion system ATPase; Validated
Probab=97.96 E-value=5e-06 Score=75.77 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=35.2
Q ss_pred cCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 72 RREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 72 ~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
.+..+.+.+|++++|+|+||+|||||+++|++.. .++.|.+
T Consensus 148 ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~---~~d~gvi 188 (434)
T PRK05922 148 IDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS---KSTINVI 188 (434)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHhccC---CCCceEE
Confidence 3445669999999999999999999999999987 7777763
No 489
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=97.96 E-value=1.5e-05 Score=65.17 Aligned_cols=128 Identities=24% Similarity=0.313 Sum_probs=74.8
Q ss_pred ccCCe----EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccC-Chhh-h-HHHH
Q 026996 78 VEARH----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAME-D-PKEA 150 (229)
Q Consensus 78 i~~Ge----iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l-~~~~-~-~~~~ 150 (229)
++.|. ++++.||-|||||||.-.|--.+. +-..| ...++. +..|+|+...+.. ...+ + -...
T Consensus 24 f~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt--~Ky~~--------E~s~~~-~SvDDFYLThe~Q~eL~k~npnN~L 92 (282)
T KOG2878|consen 24 FKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLT--KKYIQ--------EYSSAT-ISVDDFYLTHEGQAELRKKNPNNAL 92 (282)
T ss_pred ccCCCcCcEEEEecCCCCCCceeehhhhHHHHH--HHhcc--------ccceEE-EEecceeeechhHHHHHhhCCCChh
Confidence 44555 899999999999999877765441 11111 123454 6788887544211 0000 0 0112
Q ss_pred HHhcCCCCCccHHHHHHHHHhhhh----cCCCCCCCCC----ccccchhhhhhhhh-cCCcEEEEcCCcCCCChh
Q 026996 151 HARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~l~~l~~----~~~~~~~~lS----gG~k~Rl~~a~al~-~~~~illlDe~~~~LD~~ 216 (229)
.+.+|.+...+.....++++.+-. .....++.|. +|...|..-....- ....++|+++|+++..+-
T Consensus 93 lq~RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl 167 (282)
T KOG2878|consen 93 LQYRGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPL 167 (282)
T ss_pred hccCCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEeccccccccc
Confidence 345677777887777777775532 2235555553 34444443333322 467899999999998764
No 490
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=6.3e-06 Score=75.47 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=36.8
Q ss_pred hhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 70 ~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
+..++.+.+.+|++++|+|+||+|||||+++|++.. .|+.|.+
T Consensus 147 ~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~---~~~~gvI 189 (438)
T PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT---SADLNVI 189 (438)
T ss_pred hhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc---CCCeEEE
Confidence 344555679999999999999999999999999998 7877753
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.92 E-value=7.7e-06 Score=71.70 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=27.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++.|+.++|+|++|||||||+++|++.+
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 37789999999999999999999999998
No 492
>PRK10869 recombination and repair protein; Provisional
Probab=97.92 E-value=9.3e-06 Score=76.58 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=42.1
Q ss_pred CCCccccchhhhhhhhhc----CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 182 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 182 ~lSgG~k~Rl~~a~al~~----~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+||||++|+++|++++. +|+++|+|||++++|......+.+++..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~ 479 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQ 479 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 479999999999999986 5899999999999999999999888765
No 493
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.00014 Score=62.59 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=35.5
Q ss_pred ccchh--hhhhhhhcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 60 QNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 60 ~~~~~--~~~l~~~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...++ ++++++.|+.. ..-.+|++++|+|+||+||||++++|++.+
T Consensus 51 ~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 51 EEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred cHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 34445 66677777544 234478999999999999999999999987
No 494
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.90 E-value=6.6e-06 Score=74.99 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=30.7
Q ss_pred hcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 71 ~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+..+.+.+|++++|+|+||+|||||+++|++..
T Consensus 152 aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 152 AINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred eecceEEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence 34455669999999999999999999999999876
No 495
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00013 Score=68.08 Aligned_cols=28 Identities=39% Similarity=0.725 Sum_probs=26.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|++++|+||+|+||||++..|+..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999875
No 496
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.87 E-value=7.6e-06 Score=74.97 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=35.2
Q ss_pred hhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 70 ~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
+.++..+.+.+|++++|+|+||+|||||+++|++.. .++.|.
T Consensus 152 ~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~---~~~~~v 193 (440)
T TIGR01026 152 RSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNT---EADVNV 193 (440)
T ss_pred eeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCC---CCCEEE
Confidence 334555669999999999999999999999999988 676654
No 497
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.87 E-value=7.2e-05 Score=62.97 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|.+..|+||.|+|||||+-.++--.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 6778899999999999998887543
No 498
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.87 E-value=3e-05 Score=67.35 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=29.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
+.+++++|+||+|||||+|.|.|.. .++.|++
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~---~~~~g~v 192 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDL---DLATGEI 192 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchh---hccccce
Confidence 5899999999999999999999998 7888874
No 499
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.86 E-value=8.2e-06 Score=74.47 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=35.5
Q ss_pred hcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 71 ~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
.+++.+.+.+|++++|+|+||+|||||+++|++.. .|+.|.
T Consensus 135 ~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~---~~~~~v 175 (422)
T TIGR02546 135 AIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA---SADVNV 175 (422)
T ss_pred eehhhccccCCCEEEEECCCCCChHHHHHHHhCCC---CCCEEE
Confidence 34555668999999999999999999999999988 787765
No 500
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.86 E-value=8.2e-05 Score=55.99 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+.|.|+.|+|||||++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999999987
Done!