Query 026996
Match_columns 229
No_of_seqs 373 out of 2512
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 1.7E-33 5.9E-38 250.3 7.9 160 62-227 3-178 (381)
2 2pcj_A ABC transporter, lipopr 100.0 2.7E-33 9.3E-38 233.1 7.1 160 62-227 4-185 (224)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-33 5.9E-38 248.7 6.1 159 62-226 4-182 (359)
4 3tui_C Methionine import ATP-b 100.0 5.3E-33 1.8E-37 245.9 9.0 162 60-227 22-208 (366)
5 3gfo_A Cobalt import ATP-bindi 100.0 3.4E-33 1.2E-37 239.2 7.4 161 62-227 7-188 (275)
6 1z47_A CYSA, putative ABC-tran 100.0 7.8E-33 2.7E-37 244.4 8.9 163 59-227 11-190 (355)
7 3tif_A Uncharacterized ABC tra 100.0 6.8E-33 2.3E-37 232.3 7.5 159 63-227 2-190 (235)
8 1vpl_A ABC transporter, ATP-bi 100.0 7.1E-33 2.4E-37 235.0 7.5 163 59-227 12-191 (256)
9 2olj_A Amino acid ABC transpor 100.0 6.3E-33 2.1E-37 236.2 7.2 160 62-227 24-204 (263)
10 1sgw_A Putative ABC transporte 100.0 1.8E-32 6.1E-37 226.8 9.2 159 61-227 9-178 (214)
11 1b0u_A Histidine permease; ABC 100.0 1.2E-32 4.2E-37 234.2 7.8 160 62-227 6-198 (262)
12 2it1_A 362AA long hypothetical 100.0 1.4E-32 4.8E-37 243.4 8.3 159 63-227 4-178 (362)
13 2yyz_A Sugar ABC transporter, 100.0 8.9E-33 3E-37 244.4 5.9 160 62-227 3-178 (359)
14 1g29_1 MALK, maltose transport 100.0 1.9E-32 6.6E-37 243.5 7.9 160 62-227 3-184 (372)
15 1v43_A Sugar-binding transport 100.0 1.7E-32 5.8E-37 243.7 6.8 160 62-227 11-186 (372)
16 1g6h_A High-affinity branched- 100.0 2.1E-32 7.3E-37 232.1 6.4 160 62-227 7-198 (257)
17 1ji0_A ABC transporter; ATP bi 100.0 5.8E-32 2E-36 227.3 8.7 159 62-227 6-184 (240)
18 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-32 4.7E-37 243.0 4.6 159 63-227 4-185 (353)
19 4g1u_C Hemin import ATP-bindin 100.0 6.4E-32 2.2E-36 230.3 8.3 158 62-227 11-192 (266)
20 3d31_A Sulfate/molybdate ABC t 100.0 1E-31 3.4E-36 236.9 9.4 156 63-227 2-172 (348)
21 2yz2_A Putative ABC transporte 100.0 7.8E-32 2.7E-36 229.7 7.5 158 63-227 3-183 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 6.8E-32 2.3E-36 231.6 6.2 163 61-227 20-206 (279)
23 2nq2_C Hypothetical ABC transp 100.0 1.5E-31 5E-36 226.5 8.1 156 62-227 4-173 (253)
24 2onk_A Molybdate/tungstate ABC 100.0 1E-31 3.4E-36 225.9 3.4 156 63-227 2-171 (240)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 7.8E-31 2.7E-35 221.6 4.9 160 62-227 3-188 (250)
26 2zu0_C Probable ATP-dependent 100.0 3.5E-30 1.2E-34 219.6 7.5 162 62-227 20-209 (267)
27 2ff7_A Alpha-hemolysin translo 100.0 9E-30 3.1E-34 214.8 9.3 155 60-227 5-190 (247)
28 2pjz_A Hypothetical protein ST 100.0 7.3E-30 2.5E-34 217.2 8.0 150 64-227 3-173 (263)
29 1mv5_A LMRA, multidrug resista 100.0 1.4E-29 4.9E-34 213.0 7.3 153 63-227 2-184 (243)
30 2cbz_A Multidrug resistance-as 100.0 3.3E-30 1.1E-34 216.2 3.3 149 62-225 3-170 (237)
31 2ixe_A Antigen peptide transpo 100.0 4.6E-30 1.6E-34 219.4 4.2 157 62-227 16-201 (271)
32 2pze_A Cystic fibrosis transme 100.0 1E-28 3.5E-33 206.1 10.0 145 62-224 6-172 (229)
33 3nh6_A ATP-binding cassette SU 99.9 3.6E-29 1.2E-33 217.1 3.1 153 62-227 53-235 (306)
34 2ghi_A Transport protein; mult 99.9 2E-28 6.9E-33 208.0 6.7 153 61-227 16-200 (260)
35 2qi9_C Vitamin B12 import ATP- 99.9 3.2E-28 1.1E-32 205.5 7.6 140 76-227 21-178 (249)
36 3gd7_A Fusion complex of cysti 99.9 2.5E-28 8.4E-33 218.2 6.1 152 61-227 18-200 (390)
37 2bbs_A Cystic fibrosis transme 99.9 1.2E-26 4.1E-31 199.9 10.6 145 62-225 40-202 (290)
38 3ozx_A RNAse L inhibitor; ATP 99.9 9.8E-27 3.3E-31 215.8 9.8 156 60-227 267-430 (538)
39 3bk7_A ABC transporter ATP-bin 99.9 2.1E-26 7.1E-31 216.2 11.5 153 60-227 355-516 (607)
40 3b5x_A Lipid A export ATP-bind 99.9 1.7E-26 5.8E-31 216.1 9.3 154 62-227 341-525 (582)
41 1yqt_A RNAse L inhibitor; ATP- 99.9 3.1E-26 1.1E-30 212.6 10.5 154 60-227 285-446 (538)
42 3b60_A Lipid A export ATP-bind 99.9 3.2E-26 1.1E-30 214.3 8.9 154 62-227 341-525 (582)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 4.9E-26 1.7E-30 211.2 8.3 149 67-227 26-203 (538)
44 2yl4_A ATP-binding cassette SU 99.9 3.6E-26 1.2E-30 214.4 7.1 155 63-227 342-528 (595)
45 3bk7_A ABC transporter ATP-bin 99.9 8.1E-26 2.8E-30 212.2 9.2 150 66-227 95-273 (607)
46 3qf4_A ABC transporter, ATP-bi 99.9 8.6E-26 2.9E-30 211.6 6.5 153 62-227 341-524 (587)
47 3qf4_B Uncharacterized ABC tra 99.9 4.3E-26 1.5E-30 214.1 3.6 153 62-227 354-536 (598)
48 4a82_A Cystic fibrosis transme 99.9 1E-25 3.5E-30 210.7 6.2 153 62-227 339-522 (578)
49 3j16_B RLI1P; ribosome recycli 99.9 1.6E-25 5.5E-30 210.1 7.1 155 67-227 82-266 (608)
50 3ozx_A RNAse L inhibitor; ATP 99.9 5.8E-25 2E-29 203.9 10.6 140 76-227 20-183 (538)
51 3j16_B RLI1P; ribosome recycli 99.9 4.7E-24 1.6E-28 200.1 13.5 135 79-227 376-512 (608)
52 2iw3_A Elongation factor 3A; a 99.9 3.7E-24 1.3E-28 208.6 5.4 163 60-227 669-946 (986)
53 4f4c_A Multidrug resistance pr 99.9 3.5E-24 1.2E-28 216.1 2.4 154 62-227 1076-1262(1321)
54 3g5u_A MCG1178, multidrug resi 99.9 9.4E-24 3.2E-28 212.5 4.5 154 62-227 1030-1216(1284)
55 2iw3_A Elongation factor 3A; a 99.9 6.3E-23 2.2E-27 200.0 9.5 149 62-227 435-593 (986)
56 3g5u_A MCG1178, multidrug resi 99.9 4.6E-23 1.6E-27 207.6 8.3 153 62-227 387-571 (1284)
57 3aez_A Pantothenate kinase; tr 99.9 1.3E-23 4.4E-28 182.8 2.5 121 78-214 87-208 (312)
58 3ux8_A Excinuclease ABC, A sub 99.9 1.2E-22 3.9E-27 193.0 7.2 153 72-227 34-249 (670)
59 4f4c_A Multidrug resistance pr 99.9 8.7E-23 3E-27 206.0 6.6 153 62-227 415-599 (1321)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 5.5E-25 1.9E-29 200.5 -9.9 158 61-227 117-286 (460)
61 3b85_A Phosphate starvation-in 99.8 4.4E-22 1.5E-26 163.7 -0.4 116 78-227 19-145 (208)
62 3ux8_A Excinuclease ABC, A sub 99.8 6.6E-20 2.2E-24 174.0 11.0 63 165-227 523-591 (670)
63 4gp7_A Metallophosphoesterase; 99.8 3.6E-19 1.2E-23 141.4 5.7 37 180-216 81-117 (171)
64 1tq4_A IIGP1, interferon-induc 99.8 1.9E-20 6.4E-25 168.3 -2.7 128 83-227 71-211 (413)
65 1ye8_A Protein THEP1, hypothet 99.7 2E-19 6.7E-24 144.3 2.3 52 176-227 70-128 (178)
66 2jeo_A Uridine-cytidine kinase 99.7 2.5E-18 8.7E-23 143.9 6.5 127 76-215 20-148 (245)
67 3sop_A Neuronal-specific septi 99.7 4.5E-19 1.6E-23 151.1 0.9 127 83-223 4-136 (270)
68 2vf7_A UVRA2, excinuclease ABC 99.7 1E-17 3.5E-22 161.7 9.4 64 164-227 709-778 (842)
69 3pih_A Uvrabc system protein A 99.7 5.9E-17 2E-21 157.6 14.5 65 163-227 783-853 (916)
70 4aby_A DNA repair protein RECN 99.7 1.3E-18 4.6E-23 155.5 1.6 45 183-227 296-342 (415)
71 2r6f_A Excinuclease ABC subuni 99.7 5.5E-17 1.9E-21 157.5 10.9 63 165-227 825-893 (972)
72 2ygr_A Uvrabc system protein A 99.7 1.6E-16 5.4E-21 154.8 12.9 63 165-227 843-911 (993)
73 2v9p_A Replication protein E1; 99.7 1.9E-18 6.5E-23 149.5 -1.9 125 62-222 101-233 (305)
74 3asz_A Uridine kinase; cytidin 99.7 1.3E-17 4.6E-22 135.7 1.0 129 78-226 3-144 (211)
75 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 4.5E-16 1.6E-20 137.8 10.3 50 178-227 275-330 (365)
76 1e69_A Chromosome segregation 99.6 1.5E-16 5.1E-21 138.4 4.6 51 177-227 214-268 (322)
77 1odf_A YGR205W, hypothetical 3 99.6 2.8E-16 9.7E-21 135.1 3.9 125 78-216 28-168 (290)
78 1z6g_A Guanylate kinase; struc 99.6 2.5E-18 8.7E-23 141.8 -10.9 138 76-226 18-171 (218)
79 3b9q_A Chloroplast SRP recepto 99.5 3.9E-16 1.3E-20 134.9 -0.1 136 65-218 77-238 (302)
80 3c8u_A Fructokinase; YP_612366 99.5 5.9E-16 2E-20 126.3 0.9 124 78-225 19-148 (208)
81 2pt7_A CAG-ALFA; ATPase, prote 99.5 8.3E-15 2.8E-19 128.1 6.5 85 77-211 167-251 (330)
82 1sq5_A Pantothenate kinase; P- 99.5 5E-15 1.7E-19 128.1 4.0 137 60-214 35-198 (308)
83 1tf7_A KAIC; homohexamer, hexa 99.5 1.2E-14 4.2E-19 134.2 6.5 120 77-227 277-402 (525)
84 2og2_A Putative signal recogni 99.5 2E-15 6.7E-20 133.4 0.4 123 78-218 154-295 (359)
85 2i3b_A HCR-ntpase, human cance 99.5 8.4E-15 2.9E-19 118.4 2.9 121 81-227 1-134 (189)
86 3qkt_A DNA double-strand break 99.5 1.3E-13 4.5E-18 120.6 10.4 50 178-227 244-299 (339)
87 1znw_A Guanylate kinase, GMP k 99.5 1.6E-16 5.5E-21 129.5 -8.9 30 76-105 15-44 (207)
88 3tqc_A Pantothenate kinase; bi 99.4 9.2E-15 3.1E-19 127.3 0.4 117 83-215 94-211 (321)
89 2dpy_A FLII, flagellum-specifi 99.4 3.1E-15 1.1E-19 135.4 -3.0 140 62-228 131-294 (438)
90 2qnr_A Septin-2, protein NEDD5 99.4 1.1E-14 3.8E-19 125.6 -1.3 136 67-218 3-146 (301)
91 2eyu_A Twitching motility prot 99.4 4.7E-13 1.6E-17 113.3 8.7 95 78-223 22-118 (261)
92 1nlf_A Regulatory protein REPA 99.4 6.2E-13 2.1E-17 112.9 9.5 122 78-218 27-153 (279)
93 1cr0_A DNA primase/helicase; R 99.4 5.1E-13 1.7E-17 114.2 8.1 33 78-113 32-64 (296)
94 1pui_A ENGB, probable GTP-bind 99.4 1.6E-13 5.4E-18 110.8 3.5 165 63-227 4-195 (210)
95 1ewq_A DNA mismatch repair pro 99.4 2.4E-13 8.3E-18 130.4 4.1 106 78-226 574-685 (765)
96 4a74_A DNA repair and recombin 99.4 6.1E-13 2.1E-17 108.7 5.7 112 78-216 22-141 (231)
97 2obl_A ESCN; ATPase, hydrolase 99.3 2.6E-13 8.9E-18 119.4 3.3 49 63-114 46-101 (347)
98 3thx_B DNA mismatch repair pro 99.3 8.3E-14 2.8E-18 135.7 -0.0 109 78-226 670-779 (918)
99 2bbw_A Adenylate kinase 4, AK4 99.3 5.9E-15 2E-19 123.2 -7.5 134 80-227 26-195 (246)
100 2ehv_A Hypothetical protein PH 99.3 9.9E-14 3.4E-18 114.8 -0.9 28 78-105 27-56 (251)
101 2w0m_A SSO2452; RECA, SSPF, un 99.3 5.8E-13 2E-17 108.7 2.8 126 78-226 20-151 (235)
102 3thx_A DNA mismatch repair pro 99.3 4.5E-12 1.5E-16 123.8 8.4 102 78-221 659-762 (934)
103 2qag_C Septin-7; cell cycle, c 99.3 1.5E-12 5.1E-17 117.1 4.5 139 61-218 10-158 (418)
104 2o8b_B DNA mismatch repair pro 99.3 3.9E-13 1.4E-17 132.5 -0.2 106 81-226 789-895 (1022)
105 3jvv_A Twitching mobility prot 99.2 1.1E-11 3.7E-16 109.4 7.4 31 78-111 120-150 (356)
106 1rj9_A FTSY, signal recognitio 99.2 7.2E-12 2.5E-16 108.2 5.9 33 80-115 101-133 (304)
107 1htw_A HI0065; nucleotide-bind 99.2 3.9E-12 1.3E-16 99.8 3.8 50 64-117 9-65 (158)
108 2f1r_A Molybdopterin-guanine d 99.2 2.7E-12 9.3E-17 102.0 2.7 27 82-111 3-29 (171)
109 3szr_A Interferon-induced GTP- 99.2 4.8E-12 1.6E-16 118.9 4.7 113 84-227 48-179 (608)
110 1zp6_A Hypothetical protein AT 99.2 5.1E-12 1.7E-16 100.7 3.1 130 77-226 5-145 (191)
111 1p9r_A General secretion pathw 99.2 3.3E-12 1.1E-16 114.9 1.5 138 62-206 143-315 (418)
112 2ga8_A Hypothetical 39.9 kDa p 99.2 4.1E-12 1.4E-16 111.6 2.1 101 126-226 156-285 (359)
113 1lw7_A Transcriptional regulat 99.2 7.6E-12 2.6E-16 110.4 3.4 130 76-226 163-312 (365)
114 1pzn_A RAD51, DNA repair and r 99.2 2.2E-11 7.4E-16 107.1 6.2 113 78-216 128-247 (349)
115 2rcn_A Probable GTPase ENGC; Y 99.2 5.1E-12 1.8E-16 111.4 1.2 104 79-198 213-329 (358)
116 2cvh_A DNA repair and recombin 99.1 2.9E-10 9.8E-15 92.1 10.5 102 78-216 17-121 (220)
117 1wb9_A DNA mismatch repair pro 99.1 4.5E-11 1.6E-15 115.3 6.0 103 79-221 605-707 (800)
118 2ewv_A Twitching motility prot 99.1 1.2E-10 4.2E-15 103.1 8.0 34 78-114 133-167 (372)
119 3ec2_A DNA replication protein 99.1 1.9E-10 6.6E-15 90.9 8.3 36 70-105 27-62 (180)
120 3e70_C DPA, signal recognition 99.1 4.1E-11 1.4E-15 104.5 3.2 46 66-114 105-159 (328)
121 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 5.4E-11 1.9E-15 92.3 3.5 51 177-227 52-108 (148)
122 1s96_A Guanylate kinase, GMP k 99.0 1.5E-11 5.2E-16 101.4 -0.8 30 76-105 11-40 (219)
123 1tf7_A KAIC; homohexamer, hexa 99.0 1.2E-11 4.1E-16 114.2 -2.5 34 78-114 36-71 (525)
124 2kjq_A DNAA-related protein; s 99.0 8.3E-10 2.8E-14 85.5 7.7 26 80-105 35-60 (149)
125 2yv5_A YJEQ protein; hydrolase 99.0 1.1E-10 3.9E-15 100.5 3.1 113 78-195 162-300 (302)
126 2qag_B Septin-6, protein NEDD5 99.0 1.1E-10 3.9E-15 104.9 2.0 36 191-226 167-202 (427)
127 1vma_A Cell division protein F 99.0 1.8E-09 6.3E-14 93.2 8.7 106 66-211 85-197 (306)
128 1ls1_A Signal recognition part 98.9 6.4E-09 2.2E-13 89.3 11.7 127 63-226 77-207 (295)
129 1n0w_A DNA repair protein RAD5 98.9 9E-09 3.1E-13 84.4 10.1 27 78-104 21-47 (243)
130 3kta_B Chromosome segregation 98.9 1.3E-09 4.6E-14 86.6 4.8 51 177-227 59-113 (173)
131 2gza_A Type IV secretion syste 98.9 2.6E-09 9E-14 94.1 7.0 36 77-115 171-206 (361)
132 3euj_A Chromosome partition pr 98.9 1.3E-09 4.6E-14 99.4 4.6 38 76-117 25-62 (483)
133 2px0_A Flagellar biosynthesis 98.8 1.3E-08 4.5E-13 87.4 9.4 33 78-113 102-134 (296)
134 1udx_A The GTP-binding protein 98.8 1.8E-11 6E-16 110.1 -9.6 124 77-218 153-284 (416)
135 3pih_A Uvrabc system protein A 98.8 4E-09 1.4E-13 102.8 6.1 63 166-228 445-512 (916)
136 1oix_A RAS-related protein RAB 98.8 1.1E-09 3.6E-14 87.4 1.6 38 188-227 151-188 (191)
137 1sxj_E Activator 1 40 kDa subu 98.8 2E-08 6.8E-13 87.2 9.8 30 197-227 131-160 (354)
138 2r6f_A Excinuclease ABC subuni 98.8 5.9E-09 2E-13 101.6 6.7 86 141-227 452-551 (972)
139 3tr0_A Guanylate kinase, GMP k 98.8 3.7E-09 1.3E-13 84.7 3.9 28 78-105 4-31 (205)
140 1lvg_A Guanylate kinase, GMP k 98.8 4.3E-09 1.5E-13 84.9 4.1 27 79-105 2-28 (198)
141 2qm8_A GTPase/ATPase; G protei 98.7 2.3E-09 8E-14 93.7 2.1 51 62-115 29-86 (337)
142 2x8a_A Nuclear valosin-contain 98.7 4.8E-10 1.6E-14 95.2 -2.2 30 180-211 135-164 (274)
143 1in4_A RUVB, holliday junction 98.7 1.3E-09 4.5E-14 94.8 0.4 34 82-115 52-86 (334)
144 3a00_A Guanylate kinase, GMP k 98.7 5.3E-09 1.8E-13 83.3 3.6 25 81-105 1-25 (186)
145 1qhl_A Protein (cell division 98.7 4.2E-10 1.4E-14 93.2 -4.0 50 63-116 10-59 (227)
146 2ygr_A Uvrabc system protein A 98.7 2.4E-08 8.2E-13 97.6 6.6 60 168-227 504-568 (993)
147 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 1.7E-09 6E-14 96.3 -1.5 27 78-104 17-43 (392)
148 3lnc_A Guanylate kinase, GMP k 98.6 8.8E-09 3E-13 84.6 2.5 30 76-105 22-52 (231)
149 2yhs_A FTSY, cell division pro 98.6 1.3E-08 4.3E-13 93.0 3.6 36 77-115 289-324 (503)
150 2vf7_A UVRA2, excinuclease ABC 98.6 2.8E-08 9.7E-13 96.1 6.2 60 168-227 362-426 (842)
151 3lda_A DNA repair protein RAD5 98.6 5.7E-08 2E-12 86.8 7.7 25 78-102 175-199 (400)
152 4ad8_A DNA repair protein RECN 98.6 2.7E-08 9.1E-13 91.5 5.1 49 179-227 393-444 (517)
153 2j41_A Guanylate kinase; GMP, 98.6 2E-08 6.9E-13 80.4 3.7 33 78-113 3-35 (207)
154 2f9l_A RAB11B, member RAS onco 98.6 9E-08 3.1E-12 76.3 7.5 36 190-227 129-164 (199)
155 2qt1_A Nicotinamide riboside k 98.6 9.9E-08 3.4E-12 76.8 7.1 31 75-105 15-45 (207)
156 1u0l_A Probable GTPase ENGC; p 98.5 2.8E-08 9.4E-13 85.4 2.7 36 78-116 166-201 (301)
157 3kta_A Chromosome segregation 98.5 8.7E-08 3E-12 75.4 5.3 35 76-114 22-56 (182)
158 2o5v_A DNA replication and rep 98.5 5.2E-08 1.8E-12 85.8 4.3 50 178-227 260-319 (359)
159 1kgd_A CASK, peripheral plasma 98.5 5.4E-08 1.9E-12 77.0 3.8 26 80-105 4-29 (180)
160 4eun_A Thermoresistant glucoki 98.5 7.4E-08 2.5E-12 77.4 4.1 28 78-105 26-53 (200)
161 3k1j_A LON protease, ATP-depen 98.5 2.4E-07 8.2E-12 86.8 7.5 46 181-227 182-227 (604)
162 3uie_A Adenylyl-sulfate kinase 98.5 1.2E-07 4.1E-12 76.2 4.6 28 78-105 22-49 (200)
163 1t9h_A YLOQ, probable GTPase E 98.5 2.5E-08 8.5E-13 86.1 0.4 37 77-116 169-205 (307)
164 4e22_A Cytidylate kinase; P-lo 98.4 3.3E-08 1.1E-12 82.7 0.7 35 79-116 25-62 (252)
165 2oap_1 GSPE-2, type II secreti 98.4 7.1E-08 2.4E-12 88.7 2.2 35 78-115 257-291 (511)
166 2bdt_A BH3686; alpha-beta prot 98.4 1.3E-07 4.5E-12 75.0 3.4 25 81-105 2-26 (189)
167 1w1w_A Structural maintenance 98.4 2.2E-07 7.4E-12 83.5 4.6 46 182-227 333-382 (430)
168 3tau_A Guanylate kinase, GMP k 98.4 2E-07 6.7E-12 75.5 3.7 27 79-105 6-32 (208)
169 1rz3_A Hypothetical protein rb 98.4 1.7E-07 5.9E-12 75.4 3.3 33 78-113 19-51 (201)
170 3nwj_A ATSK2; P loop, shikimat 98.3 1.5E-07 5.1E-12 78.9 2.5 44 62-105 17-72 (250)
171 1knq_A Gluconate kinase; ALFA/ 98.3 3.4E-07 1.2E-11 71.6 4.2 27 79-105 6-32 (175)
172 2vp4_A Deoxynucleoside kinase; 98.3 2.1E-07 7.1E-12 76.5 2.7 29 76-104 15-43 (230)
173 3auy_A DNA double-strand break 98.3 3.3E-07 1.1E-11 80.8 4.0 49 179-227 277-332 (371)
174 1kag_A SKI, shikimate kinase I 98.3 3.6E-07 1.2E-11 71.1 3.4 26 80-105 3-28 (173)
175 1w1w_A Structural maintenance 98.3 3.1E-07 1.1E-11 82.4 3.0 46 63-112 7-54 (430)
176 3ney_A 55 kDa erythrocyte memb 98.2 7.5E-07 2.6E-11 72.0 4.4 28 78-105 16-43 (197)
177 3cr8_A Sulfate adenylyltranfer 98.2 4.1E-07 1.4E-11 84.3 3.2 33 78-113 366-398 (552)
178 2dr3_A UPF0273 protein PH0284; 98.2 1.8E-06 6.3E-11 70.5 6.6 27 78-104 20-46 (247)
179 2r6a_A DNAB helicase, replicat 98.2 4E-06 1.4E-10 75.8 8.9 115 78-215 200-328 (454)
180 1nij_A Hypothetical protein YJ 98.1 1.2E-06 4.1E-11 75.6 2.7 34 82-115 5-43 (318)
181 3vaa_A Shikimate kinase, SK; s 98.1 2.4E-06 8.1E-11 68.4 4.1 28 78-105 22-49 (199)
182 2o5v_A DNA replication and rep 98.1 2E-06 6.9E-11 75.7 3.7 29 76-105 22-50 (359)
183 1cke_A CK, MSSA, protein (cyti 98.1 2.5E-06 8.6E-11 69.1 4.0 35 81-115 5-39 (227)
184 1uj2_A Uridine-cytidine kinase 98.0 3.5E-06 1.2E-10 70.0 4.8 119 81-215 22-145 (252)
185 2ce7_A Cell division protein F 98.0 1.1E-05 3.9E-10 73.4 8.5 26 78-105 48-73 (476)
186 1ixz_A ATP-dependent metallopr 98.0 2.1E-06 7.2E-11 71.1 3.1 41 63-105 26-73 (254)
187 2pez_A Bifunctional 3'-phospho 98.0 3.6E-06 1.2E-10 66.0 4.2 27 79-105 3-29 (179)
188 1iy2_A ATP-dependent metallopr 98.0 2.5E-06 8.4E-11 71.9 3.2 41 63-105 50-97 (278)
189 3kl4_A SRP54, signal recogniti 98.0 2.5E-05 8.6E-10 70.3 9.8 26 80-105 96-121 (433)
190 2zr9_A Protein RECA, recombina 98.0 4.5E-06 1.5E-10 73.1 4.7 28 78-105 58-85 (349)
191 1svm_A Large T antigen; AAA+ f 98.0 3.6E-06 1.2E-10 74.5 4.1 29 77-105 165-193 (377)
192 1fnn_A CDC6P, cell division co 98.0 2.2E-05 7.5E-10 68.2 8.4 26 80-105 41-68 (389)
193 1jjv_A Dephospho-COA kinase; P 97.9 4.2E-06 1.4E-10 67.0 3.0 21 83-103 4-24 (206)
194 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.4E-06 2.9E-10 62.7 4.5 24 82-105 24-47 (149)
195 2dhr_A FTSH; AAA+ protein, hex 97.9 6.6E-06 2.3E-10 75.4 4.4 26 78-105 63-88 (499)
196 2if2_A Dephospho-COA kinase; a 97.9 5.6E-06 1.9E-10 66.1 3.3 22 83-105 3-24 (204)
197 2qtf_A Protein HFLX, GTP-bindi 97.9 1.7E-05 5.9E-10 69.8 6.5 28 78-105 175-203 (364)
198 2www_A Methylmalonic aciduria 97.9 6.2E-06 2.1E-10 72.1 3.6 33 79-114 72-104 (349)
199 2ius_A DNA translocase FTSK; n 97.9 7.8E-06 2.7E-10 75.1 4.1 26 78-103 164-189 (512)
200 1zu4_A FTSY; GTPase, signal re 97.9 7.4E-06 2.5E-10 70.9 3.5 34 78-114 102-135 (320)
201 4a1f_A DNAB helicase, replicat 97.8 2.8E-05 9.7E-10 67.8 7.0 98 78-214 43-141 (338)
202 2qor_A Guanylate kinase; phosp 97.8 9.4E-06 3.2E-10 65.1 3.3 30 76-105 7-36 (204)
203 2xau_A PRE-mRNA-splicing facto 97.8 2.6E-05 8.8E-10 75.1 6.8 44 178-221 186-230 (773)
204 2yvu_A Probable adenylyl-sulfa 97.8 1.8E-05 6E-10 62.4 4.4 28 78-105 10-37 (186)
205 2gj8_A MNME, tRNA modification 97.8 1.2E-05 4.1E-10 62.5 2.9 27 79-105 2-28 (172)
206 3t61_A Gluconokinase; PSI-biol 97.8 1.6E-05 5.4E-10 63.5 3.7 25 81-105 18-42 (202)
207 1m7g_A Adenylylsulfate kinase; 97.7 2E-05 6.7E-10 63.6 4.2 28 78-105 22-49 (211)
208 2p67_A LAO/AO transport system 97.7 1.5E-05 5.1E-10 69.4 3.4 34 78-114 53-86 (341)
209 3cm0_A Adenylate kinase; ATP-b 97.7 2.1E-05 7.1E-10 61.6 3.8 27 79-105 2-28 (186)
210 1q3t_A Cytidylate kinase; nucl 97.7 2.3E-05 8E-10 64.2 4.1 37 78-114 13-49 (236)
211 3m6a_A ATP-dependent protease 97.7 9.4E-06 3.2E-10 75.1 1.8 51 62-115 83-139 (543)
212 1a7j_A Phosphoribulokinase; tr 97.7 6.5E-05 2.2E-09 64.0 6.3 26 80-105 4-29 (290)
213 2e87_A Hypothetical protein PH 97.7 0.00015 5.2E-09 63.2 8.7 27 79-105 165-191 (357)
214 4eaq_A DTMP kinase, thymidylat 97.6 3.8E-05 1.3E-09 63.1 4.3 28 78-105 23-50 (229)
215 3b9p_A CG5977-PA, isoform A; A 97.6 0.00014 4.8E-09 61.2 7.9 27 79-105 52-78 (297)
216 3qks_A DNA double-strand break 97.6 4.7E-05 1.6E-09 61.3 4.5 25 82-106 24-48 (203)
217 2wji_A Ferrous iron transport 97.6 2.6E-05 9E-10 59.9 2.7 24 82-105 4-27 (165)
218 2ffh_A Protein (FFH); SRP54, s 97.6 6.7E-05 2.3E-09 67.4 5.7 41 65-105 79-122 (425)
219 3kb2_A SPBC2 prophage-derived 97.6 4.3E-05 1.5E-09 58.7 3.7 23 83-105 3-25 (173)
220 1j8m_F SRP54, signal recogniti 97.5 5.4E-05 1.8E-09 64.8 3.9 42 63-105 75-122 (297)
221 1np6_A Molybdopterin-guanine d 97.5 6.2E-05 2.1E-09 59.4 3.8 24 82-105 7-30 (174)
222 2wjg_A FEOB, ferrous iron tran 97.5 4.7E-05 1.6E-09 59.2 3.0 23 82-104 8-30 (188)
223 2p5t_B PEZT; postsegregational 97.5 6.4E-05 2.2E-09 62.4 3.7 30 76-105 27-56 (253)
224 3bh0_A DNAB-like replicative h 97.5 0.00032 1.1E-08 60.2 8.0 28 78-105 65-92 (315)
225 3hr8_A Protein RECA; alpha and 97.5 5E-05 1.7E-09 66.7 2.9 28 78-105 58-85 (356)
226 1vht_A Dephospho-COA kinase; s 97.4 8.6E-05 2.9E-09 59.8 4.0 24 80-103 3-26 (218)
227 1ega_A Protein (GTP-binding pr 97.4 4.5E-05 1.5E-09 65.2 2.4 25 81-105 8-32 (301)
228 1y63_A LMAJ004144AAA protein; 97.4 8E-05 2.7E-09 58.6 3.7 27 78-104 7-33 (184)
229 2jaq_A Deoxyguanosine kinase; 97.4 8.9E-05 3E-09 58.6 3.8 23 83-105 2-24 (205)
230 4fcw_A Chaperone protein CLPB; 97.4 0.00041 1.4E-08 58.5 8.2 25 81-105 47-71 (311)
231 1kht_A Adenylate kinase; phosp 97.4 0.0001 3.4E-09 57.6 4.0 25 81-105 3-27 (192)
232 1via_A Shikimate kinase; struc 97.4 8.1E-05 2.8E-09 57.9 3.4 23 83-105 6-28 (175)
233 1qhx_A CPT, protein (chloramph 97.4 9E-05 3.1E-09 57.5 3.6 25 81-105 3-27 (178)
234 2rhm_A Putative kinase; P-loop 97.4 0.00011 3.7E-09 57.7 4.0 27 79-105 3-29 (193)
235 2ze6_A Isopentenyl transferase 97.4 0.0001 3.5E-09 61.3 3.9 24 82-105 2-25 (253)
236 2zej_A Dardarin, leucine-rich 97.4 5.8E-05 2E-09 59.0 2.3 23 83-105 4-26 (184)
237 3r20_A Cytidylate kinase; stru 97.4 0.0001 3.5E-09 61.0 3.8 25 81-105 9-33 (233)
238 1gvn_B Zeta; postsegregational 97.4 0.00013 4.5E-09 61.9 4.3 34 72-105 24-57 (287)
239 3lw7_A Adenylate kinase relate 97.4 9.9E-05 3.4E-09 56.5 3.2 19 83-101 3-21 (179)
240 2ohf_A Protein OLA1, GTP-bindi 97.4 8.3E-05 2.8E-09 66.1 3.0 27 78-104 19-45 (396)
241 1sxj_C Activator 1 40 kDa subu 97.3 9.4E-05 3.2E-09 63.8 3.3 28 78-105 41-70 (340)
242 1gtv_A TMK, thymidylate kinase 97.3 5.5E-05 1.9E-09 60.5 1.5 23 83-105 2-24 (214)
243 4ad8_A DNA repair protein RECN 97.3 4.5E-05 1.5E-09 70.0 1.1 34 71-105 50-84 (517)
244 3ice_A Transcription terminati 97.3 0.0001 3.5E-09 65.4 3.3 31 76-106 169-199 (422)
245 1uf9_A TT1252 protein; P-loop, 97.3 0.00013 4.6E-09 57.6 3.7 25 80-104 7-31 (203)
246 2qag_A Septin-2, protein NEDD5 97.3 5.3E-05 1.8E-09 66.5 1.2 43 63-105 18-61 (361)
247 2plr_A DTMP kinase, probable t 97.3 0.00018 6.2E-09 57.1 4.2 26 80-105 3-28 (213)
248 3iij_A Coilin-interacting nucl 97.3 0.00016 5.4E-09 56.4 3.7 28 78-105 8-35 (180)
249 2v54_A DTMP kinase, thymidylat 97.3 0.00015 5.2E-09 57.4 3.7 26 80-105 3-28 (204)
250 3trf_A Shikimate kinase, SK; a 97.3 0.00017 5.9E-09 56.3 3.9 25 81-105 5-29 (185)
251 2c95_A Adenylate kinase 1; tra 97.3 0.00017 5.8E-09 56.6 3.9 27 79-105 7-33 (196)
252 3ake_A Cytidylate kinase; CMP 97.3 0.00016 5.6E-09 57.3 3.7 23 83-105 4-26 (208)
253 1tev_A UMP-CMP kinase; ploop, 97.3 0.00019 6.6E-09 56.1 4.0 26 80-105 2-27 (196)
254 1ly1_A Polynucleotide kinase; 97.3 0.00016 5.3E-09 56.0 3.4 22 82-103 3-24 (181)
255 2wwf_A Thymidilate kinase, put 97.3 0.00019 6.5E-09 57.1 3.9 27 79-105 8-34 (212)
256 2dy1_A Elongation factor G; tr 97.3 0.0002 7E-09 67.7 4.7 37 78-115 6-42 (665)
257 3lxx_A GTPase IMAP family memb 97.2 0.00014 4.6E-09 59.5 3.0 24 82-105 30-53 (239)
258 1xjc_A MOBB protein homolog; s 97.2 0.00022 7.4E-09 56.1 3.8 24 82-105 5-28 (169)
259 3h4m_A Proteasome-activating n 97.2 0.00082 2.8E-08 56.0 7.5 28 78-105 48-75 (285)
260 1nn5_A Similar to deoxythymidy 97.2 0.00022 7.7E-09 56.8 3.8 27 79-105 7-33 (215)
261 3k53_A Ferrous iron transport 97.2 0.00014 4.8E-09 60.8 2.7 23 83-105 5-27 (271)
262 1ex7_A Guanylate kinase; subst 97.2 0.00018 6.1E-09 57.4 3.1 22 84-105 4-25 (186)
263 3dm5_A SRP54, signal recogniti 97.2 0.0032 1.1E-07 56.7 11.4 26 80-105 99-124 (443)
264 1lv7_A FTSH; alpha/beta domain 97.2 0.00023 7.9E-09 58.7 3.6 22 84-105 48-69 (257)
265 2z0h_A DTMP kinase, thymidylat 97.2 0.00027 9.3E-09 55.5 3.7 23 83-105 2-24 (197)
266 1nks_A Adenylate kinase; therm 97.1 0.00026 8.7E-09 55.3 3.5 23 83-105 3-25 (194)
267 1mky_A Probable GTP-binding pr 97.1 0.00018 6.2E-09 64.5 3.0 24 82-105 181-204 (439)
268 1aky_A Adenylate kinase; ATP:A 97.1 0.00031 1.1E-08 56.6 4.1 26 80-105 3-28 (220)
269 2bwj_A Adenylate kinase 5; pho 97.1 0.0002 6.9E-09 56.3 2.8 28 78-105 9-36 (199)
270 2vli_A Antibiotic resistance p 97.1 0.0002 6.9E-09 55.7 2.5 26 80-105 4-29 (183)
271 3d3q_A TRNA delta(2)-isopenten 97.1 0.00053 1.8E-08 59.7 5.0 24 82-105 8-31 (340)
272 2cdn_A Adenylate kinase; phosp 97.1 0.00044 1.5E-08 54.8 4.1 27 79-105 18-44 (201)
273 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 55.7 3.7 23 83-105 2-24 (216)
274 1ypw_A Transitional endoplasmi 97.0 0.0003 1E-08 68.0 3.5 29 77-105 234-262 (806)
275 2ged_A SR-beta, signal recogni 97.0 0.00039 1.3E-08 54.2 3.6 26 80-105 47-72 (193)
276 3cf0_A Transitional endoplasmi 97.0 0.0004 1.4E-08 59.0 3.9 28 78-105 46-73 (301)
277 2pbr_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 54.1 3.8 23 83-105 2-24 (195)
278 1zd8_A GTP:AMP phosphotransfer 97.0 0.00036 1.2E-08 56.6 3.4 27 79-105 5-31 (227)
279 1e6c_A Shikimate kinase; phosp 97.0 0.0004 1.4E-08 53.4 3.4 24 82-105 3-26 (173)
280 1ukz_A Uridylate kinase; trans 97.0 0.00045 1.5E-08 54.8 3.8 26 80-105 14-39 (203)
281 1zak_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 56.1 3.4 26 80-105 4-29 (222)
282 1qf9_A UMP/CMP kinase, protein 97.0 0.00047 1.6E-08 53.7 3.7 25 81-105 6-30 (194)
283 2pt5_A Shikimate kinase, SK; a 97.0 0.00051 1.8E-08 52.6 3.8 23 83-105 2-24 (168)
284 2iyv_A Shikimate kinase, SK; t 97.0 0.00041 1.4E-08 54.1 3.3 24 82-105 3-26 (184)
285 1zuh_A Shikimate kinase; alpha 97.0 0.00053 1.8E-08 52.7 3.9 24 82-105 8-31 (168)
286 1z2a_A RAS-related protein RAB 97.0 0.00049 1.7E-08 52.0 3.5 23 83-105 7-29 (168)
287 3llm_A ATP-dependent RNA helic 97.0 0.00033 1.1E-08 57.2 2.6 27 78-104 73-99 (235)
288 3dl0_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 55.3 3.4 23 83-105 2-24 (216)
289 3b1v_A Ferrous iron uptake tra 97.0 0.00035 1.2E-08 58.9 2.8 23 82-104 4-26 (272)
290 2dyk_A GTP-binding protein; GT 96.9 0.00055 1.9E-08 51.4 3.6 23 83-105 3-25 (161)
291 2ce2_X GTPase HRAS; signaling 96.9 0.00049 1.7E-08 51.6 3.2 23 83-105 5-27 (166)
292 1kao_A RAP2A; GTP-binding prot 96.9 0.00058 2E-08 51.3 3.6 23 83-105 5-27 (167)
293 1u8z_A RAS-related protein RAL 96.9 0.00058 2E-08 51.4 3.5 23 83-105 6-28 (168)
294 3auy_A DNA double-strand break 96.9 0.0004 1.4E-08 60.9 2.9 24 82-105 26-50 (371)
295 3tlx_A Adenylate kinase 2; str 96.9 0.00072 2.5E-08 55.7 4.3 27 79-105 27-53 (243)
296 2qby_A CDC6 homolog 1, cell di 96.9 0.00067 2.3E-08 58.4 4.3 27 79-105 43-69 (386)
297 1z0j_A RAB-22, RAS-related pro 96.9 0.00063 2.1E-08 51.5 3.6 23 83-105 8-30 (170)
298 1z08_A RAS-related protein RAB 96.9 0.00063 2.1E-08 51.6 3.6 23 83-105 8-30 (170)
299 1m2o_B GTP-binding protein SAR 96.9 0.00054 1.8E-08 53.8 3.2 23 82-104 24-46 (190)
300 1ky3_A GTP-binding protein YPT 96.9 0.00065 2.2E-08 52.0 3.6 23 83-105 10-32 (182)
301 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00065 2.2E-08 56.5 3.8 26 80-105 3-28 (260)
302 1c1y_A RAS-related protein RAP 96.9 0.00066 2.2E-08 51.2 3.5 22 83-104 5-26 (167)
303 2grj_A Dephospho-COA kinase; T 96.9 0.00059 2E-08 54.5 3.3 25 81-105 12-36 (192)
304 2lkc_A Translation initiation 96.9 0.00065 2.2E-08 52.0 3.5 27 79-105 6-32 (178)
305 1ek0_A Protein (GTP-binding pr 96.9 0.00068 2.3E-08 51.2 3.5 23 83-105 5-27 (170)
306 2erx_A GTP-binding protein DI- 96.9 0.00057 1.9E-08 51.7 3.0 22 83-104 5-26 (172)
307 2nzj_A GTP-binding protein REM 96.8 0.00052 1.8E-08 52.3 2.8 23 83-105 6-28 (175)
308 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.00071 2.4E-08 51.7 3.6 23 83-105 9-31 (177)
309 2fn4_A P23, RAS-related protei 96.8 0.00064 2.2E-08 52.0 3.3 23 82-104 10-32 (181)
310 1g16_A RAS-related protein SEC 96.8 0.00064 2.2E-08 51.4 3.2 23 83-105 5-27 (170)
311 2xb4_A Adenylate kinase; ATP-b 96.8 0.00076 2.6E-08 54.7 3.8 23 83-105 2-24 (223)
312 3t34_A Dynamin-related protein 96.8 0.0005 1.7E-08 59.9 2.8 22 83-104 36-57 (360)
313 3t1o_A Gliding protein MGLA; G 96.8 0.00074 2.5E-08 52.4 3.5 23 83-105 16-38 (198)
314 1r2q_A RAS-related protein RAB 96.8 0.00079 2.7E-08 50.8 3.5 22 83-104 8-29 (170)
315 3q85_A GTP-binding protein REM 96.8 0.00058 2E-08 51.8 2.7 23 83-105 4-26 (169)
316 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00079 2.7E-08 51.9 3.6 23 83-105 6-28 (189)
317 2oil_A CATX-8, RAS-related pro 96.8 0.00079 2.7E-08 52.5 3.5 23 83-105 27-49 (193)
318 3clv_A RAB5 protein, putative; 96.8 0.00081 2.8E-08 52.2 3.6 24 82-105 8-31 (208)
319 1v5w_A DMC1, meiotic recombina 96.8 0.00091 3.1E-08 58.1 4.2 27 78-104 119-145 (343)
320 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00072 2.5E-08 59.5 3.6 32 80-114 34-65 (392)
321 1fzq_A ADP-ribosylation factor 96.8 0.00039 1.3E-08 54.1 1.7 24 81-104 16-39 (181)
322 3bc1_A RAS-related protein RAB 96.8 0.00082 2.8E-08 51.9 3.5 23 83-105 13-35 (195)
323 3q72_A GTP-binding protein RAD 96.8 0.0004 1.4E-08 52.5 1.7 23 83-105 4-26 (166)
324 3be4_A Adenylate kinase; malar 96.8 0.00082 2.8E-08 54.2 3.6 26 80-105 4-29 (217)
325 3lxw_A GTPase IMAP family memb 96.8 0.00066 2.2E-08 56.1 3.0 24 82-105 22-45 (247)
326 1r8s_A ADP-ribosylation factor 96.8 0.0009 3.1E-08 50.4 3.5 23 83-105 2-24 (164)
327 3bos_A Putative DNA replicatio 96.8 0.001 3.4E-08 53.4 3.9 26 80-105 51-76 (242)
328 1jal_A YCHF protein; nucleotid 96.8 0.00084 2.9E-08 59.0 3.7 24 81-104 2-25 (363)
329 3pqc_A Probable GTP-binding pr 96.8 0.00059 2E-08 52.9 2.5 23 83-105 25-47 (195)
330 1svi_A GTP-binding protein YSX 96.7 0.0006 2E-08 53.2 2.5 24 81-104 23-46 (195)
331 2f6r_A COA synthase, bifunctio 96.7 0.00083 2.9E-08 56.6 3.5 24 80-103 74-97 (281)
332 2a9k_A RAS-related protein RAL 96.7 0.00091 3.1E-08 51.4 3.5 24 82-105 19-42 (187)
333 1upt_A ARL1, ADP-ribosylation 96.7 0.0011 3.8E-08 50.2 3.9 25 80-104 6-30 (171)
334 3con_A GTPase NRAS; structural 96.7 0.00091 3.1E-08 51.9 3.5 23 83-105 23-45 (190)
335 3ihw_A Centg3; RAS, centaurin, 96.7 0.00094 3.2E-08 52.1 3.6 22 83-104 22-43 (184)
336 1z0f_A RAB14, member RAS oncog 96.7 0.00095 3.3E-08 50.9 3.5 24 82-105 16-39 (179)
337 3crm_A TRNA delta(2)-isopenten 96.7 0.0015 5E-08 56.5 5.0 24 82-105 6-29 (323)
338 2g6b_A RAS-related protein RAB 96.7 0.00097 3.3E-08 51.1 3.5 24 82-105 11-34 (180)
339 1f6b_A SAR1; gtpases, N-termin 96.7 0.0004 1.4E-08 55.0 1.3 21 83-103 27-47 (198)
340 3tw8_B RAS-related protein RAB 96.7 0.00056 1.9E-08 52.3 2.1 22 83-104 11-32 (181)
341 2y8e_A RAB-protein 6, GH09086P 96.7 0.0009 3.1E-08 51.0 3.2 22 83-104 16-37 (179)
342 1e4v_A Adenylate kinase; trans 96.7 0.00095 3.3E-08 53.5 3.5 23 83-105 2-24 (214)
343 3umf_A Adenylate kinase; rossm 96.7 0.0013 4.5E-08 53.6 4.3 28 78-105 26-53 (217)
344 3a8t_A Adenylate isopentenyltr 96.7 0.0016 5.4E-08 56.6 5.0 27 79-105 38-64 (339)
345 3cph_A RAS-related protein SEC 96.7 0.0011 3.8E-08 52.3 3.7 28 78-105 17-44 (213)
346 2hxs_A RAB-26, RAS-related pro 96.7 0.00092 3.2E-08 51.1 3.1 23 83-105 8-30 (178)
347 3exa_A TRNA delta(2)-isopenten 96.7 0.0016 5.6E-08 56.1 4.9 25 81-105 3-27 (322)
348 2cxx_A Probable GTP-binding pr 96.7 0.00067 2.3E-08 52.5 2.3 23 83-105 3-25 (190)
349 2h92_A Cytidylate kinase; ross 96.7 0.00098 3.3E-08 53.4 3.4 25 81-105 3-27 (219)
350 2dby_A GTP-binding protein; GD 96.7 0.00088 3E-08 58.9 3.3 23 83-105 3-25 (368)
351 2efe_B Small GTP-binding prote 96.7 0.0011 3.9E-08 50.7 3.6 23 83-105 14-36 (181)
352 1vg8_A RAS-related protein RAB 96.7 0.0011 3.8E-08 52.1 3.6 24 82-105 9-32 (207)
353 3iby_A Ferrous iron transport 96.7 0.00077 2.6E-08 56.1 2.7 23 83-105 3-25 (256)
354 1ak2_A Adenylate kinase isoenz 96.7 0.0014 4.8E-08 53.4 4.2 27 79-105 14-40 (233)
355 3kkq_A RAS-related protein M-R 96.7 0.0011 3.9E-08 51.0 3.5 23 82-104 19-41 (183)
356 1nrj_B SR-beta, signal recogni 96.7 0.0011 3.8E-08 52.8 3.5 24 82-105 13-36 (218)
357 3tkl_A RAS-related protein RAB 96.7 0.0011 3.9E-08 51.5 3.5 23 83-105 18-40 (196)
358 2bme_A RAB4A, RAS-related prot 96.7 0.001 3.5E-08 51.3 3.2 24 82-105 11-34 (186)
359 4edh_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 53.1 4.1 27 79-105 4-30 (213)
360 1m7b_A RND3/RHOE small GTP-bin 96.7 0.001 3.5E-08 51.5 3.2 23 83-105 9-31 (184)
361 2bov_A RAla, RAS-related prote 96.6 0.0011 3.9E-08 51.9 3.5 24 82-105 15-38 (206)
362 1wf3_A GTP-binding protein; GT 96.6 0.00089 3.1E-08 57.1 3.0 23 83-105 9-31 (301)
363 2gf9_A RAS-related protein RAB 96.6 0.0012 4.2E-08 51.3 3.5 23 83-105 24-46 (189)
364 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0012 4.3E-08 50.6 3.5 22 83-104 7-28 (186)
365 2cjw_A GTP-binding protein GEM 96.6 0.0012 4.2E-08 51.9 3.5 23 83-105 8-30 (192)
366 2w58_A DNAI, primosome compone 96.6 0.0015 5E-08 51.7 3.9 24 82-105 55-78 (202)
367 2fg5_A RAB-22B, RAS-related pr 96.6 0.0012 4E-08 51.7 3.3 24 82-105 24-47 (192)
368 2gf0_A GTP-binding protein DI- 96.6 0.0012 4.1E-08 51.5 3.3 23 82-104 9-31 (199)
369 2wsm_A Hydrogenase expression/ 96.6 0.0012 4.1E-08 52.7 3.3 25 81-105 30-54 (221)
370 3oes_A GTPase rhebl1; small GT 96.6 0.0012 4.1E-08 52.0 3.2 26 80-105 23-48 (201)
371 3t5g_A GTP-binding protein RHE 96.6 0.0012 4.2E-08 50.7 3.2 22 83-104 8-29 (181)
372 2xtp_A GTPase IMAP family memb 96.6 0.00097 3.3E-08 55.0 2.8 24 82-105 23-46 (260)
373 3lv8_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 54.0 3.8 27 79-105 25-51 (236)
374 3dz8_A RAS-related protein RAB 96.6 0.0012 4.2E-08 51.4 3.2 24 82-105 24-47 (191)
375 3a1s_A Iron(II) transport prot 96.6 0.0011 3.7E-08 55.2 3.0 23 83-105 7-29 (258)
376 3foz_A TRNA delta(2)-isopenten 96.6 0.0029 9.8E-08 54.4 5.7 25 81-105 10-34 (316)
377 2a5j_A RAS-related protein RAB 96.6 0.0014 4.9E-08 51.1 3.5 23 83-105 23-45 (191)
378 1z06_A RAS-related protein RAB 96.6 0.0015 5E-08 50.8 3.6 24 82-105 21-44 (189)
379 3v9p_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 54.1 3.2 28 78-105 22-49 (227)
380 1ltq_A Polynucleotide kinase; 96.6 0.0013 4.6E-08 55.3 3.5 23 82-104 3-25 (301)
381 3reg_A RHO-like small GTPase; 96.6 0.0015 5E-08 51.1 3.5 24 82-105 24-47 (194)
382 3bwd_D RAC-like GTP-binding pr 96.6 0.0015 5.1E-08 50.1 3.5 23 82-104 9-31 (182)
383 1sky_E F1-ATPase, F1-ATP synth 96.5 0.001 3.4E-08 60.4 2.8 30 76-105 146-175 (473)
384 2ew1_A RAS-related protein RAB 96.5 0.0013 4.5E-08 52.2 3.2 23 83-105 28-50 (201)
385 1moz_A ARL1, ADP-ribosylation 96.5 0.00096 3.3E-08 51.3 2.3 25 79-103 16-40 (183)
386 1zd9_A ADP-ribosylation factor 96.5 0.0015 5.3E-08 50.8 3.5 25 81-105 22-46 (188)
387 1x3s_A RAS-related protein RAB 96.5 0.0016 5.4E-08 50.5 3.5 24 82-105 16-39 (195)
388 2atv_A RERG, RAS-like estrogen 96.5 0.0016 5.5E-08 51.0 3.6 24 81-104 28-51 (196)
389 3iev_A GTP-binding protein ERA 96.5 0.0012 4.1E-08 56.4 3.0 23 83-105 12-34 (308)
390 1jbk_A CLPB protein; beta barr 96.5 0.0022 7.5E-08 49.2 4.2 26 80-105 42-67 (195)
391 2p5s_A RAS and EF-hand domain 96.5 0.0017 5.7E-08 51.1 3.5 25 81-105 28-52 (199)
392 4tmk_A Protein (thymidylate ki 96.5 0.0018 6.3E-08 52.5 3.8 26 80-105 2-27 (213)
393 3i8s_A Ferrous iron transport 96.5 0.0012 4.1E-08 55.4 2.7 23 83-105 5-27 (274)
394 2iwr_A Centaurin gamma 1; ANK 96.5 0.0013 4.3E-08 50.5 2.7 23 83-105 9-31 (178)
395 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0015 5.2E-08 51.5 3.2 23 83-105 10-32 (206)
396 2ocp_A DGK, deoxyguanosine kin 96.5 0.0017 5.8E-08 53.1 3.6 26 80-105 1-26 (241)
397 3cbq_A GTP-binding protein REM 96.5 0.00078 2.7E-08 53.2 1.4 24 82-105 24-47 (195)
398 1ksh_A ARF-like protein 2; sma 96.5 0.0012 4.1E-08 51.1 2.5 26 79-104 16-41 (186)
399 1zbd_A Rabphilin-3A; G protein 96.5 0.0015 5E-08 51.4 3.0 23 83-105 10-32 (203)
400 1njg_A DNA polymerase III subu 96.4 0.0015 5.2E-08 51.9 3.1 23 83-105 47-69 (250)
401 1gwn_A RHO-related GTP-binding 96.4 0.0016 5.6E-08 51.8 3.2 24 82-105 29-52 (205)
402 3ld9_A DTMP kinase, thymidylat 96.4 0.0024 8.2E-08 52.3 4.2 27 79-105 19-45 (223)
403 2z43_A DNA repair and recombin 96.4 0.0016 5.6E-08 55.9 3.4 28 78-105 104-131 (324)
404 3c5c_A RAS-like protein 12; GD 96.4 0.0019 6.7E-08 50.3 3.6 23 82-104 22-44 (187)
405 2fv8_A H6, RHO-related GTP-bin 96.4 0.0017 5.9E-08 51.4 3.3 23 83-105 27-49 (207)
406 2fh5_B SR-beta, signal recogni 96.4 0.0019 6.5E-08 51.2 3.5 24 82-105 8-31 (214)
407 1zj6_A ADP-ribosylation factor 96.4 0.0014 4.9E-08 50.8 2.7 25 80-104 15-39 (187)
408 3sr0_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 51.7 3.7 23 83-105 2-24 (206)
409 3t15_A Ribulose bisphosphate c 96.4 0.0034 1.1E-07 53.1 5.1 38 68-105 23-60 (293)
410 3tmk_A Thymidylate kinase; pho 96.4 0.0023 7.7E-08 52.1 3.8 27 79-105 3-29 (216)
411 4dhe_A Probable GTP-binding pr 96.4 0.0007 2.4E-08 54.1 0.7 24 81-104 29-52 (223)
412 3zvl_A Bifunctional polynucleo 96.4 0.0017 5.7E-08 57.9 3.2 26 80-105 257-282 (416)
413 1l8q_A Chromosomal replication 96.4 0.0019 6.4E-08 55.1 3.4 26 80-105 36-61 (324)
414 2h17_A ADP-ribosylation factor 96.4 0.0014 4.6E-08 50.7 2.2 24 81-104 21-44 (181)
415 1jwy_B Dynamin A GTPase domain 96.4 0.0015 5.1E-08 55.3 2.7 23 83-105 26-48 (315)
416 2o52_A RAS-related protein RAB 96.4 0.0015 5E-08 51.6 2.4 23 82-104 26-48 (200)
417 3t5d_A Septin-7; GTP-binding p 96.4 0.0011 3.9E-08 55.3 1.9 22 83-104 10-31 (274)
418 2gco_A H9, RHO-related GTP-bin 96.4 0.002 6.9E-08 50.8 3.2 23 83-105 27-49 (201)
419 4bas_A ADP-ribosylation factor 96.3 0.0014 4.7E-08 51.1 2.1 25 81-105 17-41 (199)
420 2f7s_A C25KG, RAS-related prot 96.3 0.0018 6.3E-08 51.4 2.8 22 83-104 27-48 (217)
421 2atx_A Small GTP binding prote 96.3 0.0022 7.7E-08 49.9 3.3 22 83-104 20-41 (194)
422 2h57_A ADP-ribosylation factor 96.3 0.001 3.5E-08 51.8 1.3 25 81-105 21-45 (190)
423 2qu8_A Putative nucleolar GTP- 96.3 0.0016 5.5E-08 52.5 2.5 26 80-105 28-53 (228)
424 2il1_A RAB12; G-protein, GDP, 96.3 0.0014 4.6E-08 51.4 2.0 22 83-104 28-49 (192)
425 3eph_A TRNA isopentenyltransfe 96.3 0.0042 1.4E-07 55.3 5.3 24 82-105 3-26 (409)
426 2fu5_C RAS-related protein RAB 96.3 0.0014 4.6E-08 50.5 1.9 22 83-104 10-31 (183)
427 2hf9_A Probable hydrogenase ni 96.3 0.0022 7.6E-08 51.3 3.2 25 81-105 38-62 (226)
428 2q3h_A RAS homolog gene family 96.3 0.0019 6.6E-08 50.6 2.7 25 80-104 19-43 (201)
429 1p5z_B DCK, deoxycytidine kina 96.3 0.0013 4.4E-08 54.6 1.8 28 78-105 21-48 (263)
430 3llu_A RAS-related GTP-binding 96.3 0.0018 6.3E-08 50.8 2.5 24 82-105 21-44 (196)
431 3def_A T7I23.11 protein; chlor 96.2 0.002 6.9E-08 53.5 2.7 24 82-105 37-60 (262)
432 2j1l_A RHO-related GTP-binding 96.2 0.0019 6.4E-08 51.6 2.5 23 82-104 35-57 (214)
433 2hup_A RAS-related protein RAB 96.2 0.0027 9.1E-08 50.2 3.3 23 82-104 30-52 (201)
434 2p65_A Hypothetical protein PF 96.2 0.0027 9.4E-08 48.6 3.3 26 80-105 42-67 (187)
435 2z4s_A Chromosomal replication 96.2 0.0025 8.7E-08 57.1 3.5 25 81-105 130-154 (440)
436 4hlc_A DTMP kinase, thymidylat 96.2 0.0037 1.3E-07 50.3 4.1 25 81-105 2-26 (205)
437 2v3c_C SRP54, signal recogniti 96.2 0.0028 9.7E-08 56.8 3.6 24 82-105 100-123 (432)
438 4gzl_A RAS-related C3 botulinu 96.2 0.0028 9.6E-08 50.1 3.2 25 80-104 29-53 (204)
439 1sxj_D Activator 1 41 kDa subu 96.2 0.0031 1.1E-07 53.8 3.7 22 84-105 61-82 (353)
440 3cpj_B GTP-binding protein YPT 96.2 0.0032 1.1E-07 50.5 3.6 23 83-105 15-37 (223)
441 2qmh_A HPR kinase/phosphorylas 96.2 0.003 1E-07 51.0 3.3 28 78-105 31-58 (205)
442 2aka_B Dynamin-1; fusion prote 96.2 0.0021 7.2E-08 53.8 2.5 24 82-105 27-50 (299)
443 1ypw_A Transitional endoplasmi 96.2 0.0015 5E-08 63.1 1.7 28 78-105 508-535 (806)
444 2g3y_A GTP-binding protein GEM 96.2 0.0025 8.5E-08 51.4 2.8 22 83-104 39-60 (211)
445 3q3j_B RHO-related GTP-binding 96.1 0.0033 1.1E-07 50.2 3.5 24 81-104 27-50 (214)
446 1h65_A Chloroplast outer envel 96.1 0.0025 8.4E-08 53.1 2.7 24 82-105 40-63 (270)
447 2i1q_A DNA repair and recombin 96.1 0.0032 1.1E-07 53.8 3.4 27 78-104 95-121 (322)
448 3cnl_A YLQF, putative uncharac 96.1 0.0026 8.8E-08 53.2 2.7 24 82-105 100-123 (262)
449 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0047 1.6E-07 50.5 4.2 27 79-105 37-63 (262)
450 2j0v_A RAC-like GTP-binding pr 96.1 0.0034 1.2E-07 49.6 3.2 23 82-104 10-32 (212)
451 2yc2_C IFT27, small RAB-relate 96.1 0.0013 4.6E-08 51.5 0.8 23 82-104 21-43 (208)
452 3gmt_A Adenylate kinase; ssgci 96.0 0.0045 1.5E-07 50.9 3.8 24 82-105 9-32 (230)
453 2v1u_A Cell division control p 96.0 0.0047 1.6E-07 53.1 4.1 27 79-105 42-68 (387)
454 3p32_A Probable GTPase RV1496/ 96.0 0.0051 1.8E-07 53.5 4.3 27 79-105 77-103 (355)
455 3bgw_A DNAB-like replicative h 96.0 0.026 8.8E-07 50.7 8.9 28 78-105 194-221 (444)
456 4djt_A GTP-binding nuclear pro 96.0 0.0012 4.1E-08 52.5 0.2 22 83-104 13-34 (218)
457 2b6h_A ADP-ribosylation factor 96.0 0.0043 1.5E-07 48.5 3.3 24 80-103 28-51 (192)
458 4dcu_A GTP-binding protein ENG 95.9 0.0021 7.3E-08 57.8 1.6 23 83-105 25-47 (456)
459 1g8f_A Sulfate adenylyltransfe 95.9 0.0075 2.6E-07 55.2 5.1 39 65-105 381-419 (511)
460 2zts_A Putative uncharacterize 95.9 0.0054 1.8E-07 49.6 3.6 25 78-102 27-51 (251)
461 3geh_A MNME, tRNA modification 95.9 0.0023 7.9E-08 57.9 1.5 28 78-105 221-248 (462)
462 2x77_A ADP-ribosylation factor 95.8 0.0033 1.1E-07 48.7 1.9 24 80-103 21-44 (189)
463 1u94_A RECA protein, recombina 95.8 0.0067 2.3E-07 53.0 3.9 28 78-105 60-87 (356)
464 3l0o_A Transcription terminati 95.7 0.0051 1.7E-07 54.6 3.1 33 73-105 167-199 (427)
465 2chg_A Replication factor C sm 95.7 0.0065 2.2E-07 47.6 3.5 22 84-105 41-62 (226)
466 2r8r_A Sensor protein; KDPD, P 95.7 0.018 6.3E-07 47.1 6.3 26 80-105 4-30 (228)
467 3gj0_A GTP-binding nuclear pro 95.7 0.0041 1.4E-07 49.6 2.2 24 82-105 16-40 (221)
468 2r62_A Cell division protease 95.7 0.003 1E-07 52.1 1.4 22 84-105 47-68 (268)
469 2orw_A Thymidine kinase; TMTK, 95.7 0.0077 2.6E-07 47.4 3.8 25 80-104 2-27 (184)
470 3n70_A Transport activator; si 95.7 0.0071 2.4E-07 45.4 3.3 27 79-105 22-48 (145)
471 3syl_A Protein CBBX; photosynt 95.6 0.008 2.7E-07 50.4 3.9 27 79-105 65-91 (309)
472 1wxq_A GTP-binding protein; st 95.6 0.005 1.7E-07 54.6 2.5 23 83-105 2-24 (397)
473 1puj_A YLQF, conserved hypothe 95.6 0.007 2.4E-07 51.1 3.2 27 79-105 118-144 (282)
474 3r7w_A Gtpase1, GTP-binding pr 95.5 0.0065 2.2E-07 51.7 3.0 24 81-104 3-26 (307)
475 2q6t_A DNAB replication FORK h 95.5 0.0088 3E-07 53.6 3.9 28 78-105 197-224 (444)
476 3th5_A RAS-related C3 botulinu 94.5 0.0023 8E-08 50.4 0.0 24 81-104 30-53 (204)
477 3pvs_A Replication-associated 95.4 0.0059 2E-07 54.9 2.5 23 83-105 52-74 (447)
478 1m8p_A Sulfate adenylyltransfe 95.4 0.011 3.6E-07 55.0 4.2 28 78-105 393-420 (573)
479 3tqf_A HPR(Ser) kinase; transf 95.4 0.0095 3.2E-07 47.0 3.2 26 78-103 13-38 (181)
480 1qvr_A CLPB protein; coiled co 95.4 0.028 9.5E-07 54.4 7.2 101 79-227 586-686 (854)
481 1ko7_A HPR kinase/phosphatase; 95.4 0.0099 3.4E-07 51.1 3.6 24 80-103 143-166 (314)
482 1x6v_B Bifunctional 3'-phospho 95.4 0.011 3.7E-07 55.5 4.1 26 80-105 51-76 (630)
483 2hjg_A GTP-binding protein ENG 95.4 0.0048 1.6E-07 55.1 1.7 23 83-105 5-27 (436)
484 3gee_A MNME, tRNA modification 95.4 0.0031 1.1E-07 57.2 0.4 28 77-104 229-256 (476)
485 1ofh_A ATP-dependent HSL prote 95.4 0.011 3.7E-07 49.4 3.7 25 81-105 50-74 (310)
486 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.011 3.9E-07 50.5 3.9 27 79-105 43-69 (322)
487 2j37_W Signal recognition part 95.3 0.011 3.8E-07 54.0 4.0 27 79-105 99-125 (504)
488 3hws_A ATP-dependent CLP prote 95.3 0.0099 3.4E-07 51.5 3.5 26 80-105 50-75 (363)
489 3ec1_A YQEH GTPase; atnos1, at 95.3 0.0097 3.3E-07 52.1 3.4 25 80-104 161-185 (369)
490 1d2n_A N-ethylmaleimide-sensit 95.3 0.01 3.5E-07 49.1 3.3 26 80-105 63-88 (272)
491 3sjy_A Translation initiation 95.2 0.0087 3E-07 52.9 2.8 23 82-104 9-31 (403)
492 1tue_A Replication protein E1; 95.2 0.012 4E-07 47.7 3.2 28 78-105 55-82 (212)
493 1bif_A 6-phosphofructo-2-kinas 95.2 0.014 4.9E-07 52.5 4.2 26 80-105 38-63 (469)
494 2qby_B CDC6 homolog 3, cell di 95.2 0.014 4.7E-07 50.4 3.9 26 80-105 44-69 (384)
495 3uk6_A RUVB-like 2; hexameric 95.2 0.013 4.3E-07 50.5 3.6 26 80-105 69-94 (368)
496 3d8b_A Fidgetin-like protein 1 95.1 0.015 5.1E-07 50.5 3.9 27 79-105 115-141 (357)
497 2qgz_A Helicase loader, putati 95.1 0.016 5.5E-07 49.4 4.0 25 81-105 152-176 (308)
498 2x2e_A Dynamin-1; nitration, h 95.1 0.0058 2E-07 53.0 1.2 23 83-105 33-55 (353)
499 3hjn_A DTMP kinase, thymidylat 95.1 0.016 5.6E-07 46.1 3.7 23 83-105 2-24 (197)
500 2gks_A Bifunctional SAT/APS ki 95.0 0.017 5.8E-07 53.3 4.2 27 79-105 370-396 (546)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.98 E-value=1.7e-33 Score=250.31 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=128.6
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEE
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVAT 127 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~ 127 (229)
.+++++|+|.|++..+ |++||+++|+||||||||||+|+|+|++ +|++|++. ++..+ ...+|+
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC---CCCCeEEEECCEECCCCCHHHCCEEE
Confidence 3677889999987643 8899999999999999999999999999 99999964 44322 234677
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ |+.... +.+++.+|+.+.....+.........+.++++.++. ..+.++.+||||||||+++|+||+.+|++||
T Consensus 80 Vf-Q~~~l~--p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 80 VF-QSYALY--PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp EC-TTCCCC--TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred Ee-cCCcCC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54 443322 237999999988776665544445667778886664 4678899999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||||++||+..+.++++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.98 E-value=2.7e-33 Score=233.10 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=122.9
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC-----------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP----------- 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~----------- 122 (229)
.++++++++.|++.. .+++|++++|+||||||||||+|+|+|++ +|++|++. .+....
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD---APTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS---CCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCCCCHHHHHHHH
Confidence 367778888887653 28899999999999999999999999999 99999964 443221
Q ss_pred -CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhc
Q 026996 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 123 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
..++++. ++.... ..+++.+++.+.....+.........+.++++.++. ..+.++.+||||||||+++|+|++.
T Consensus 81 ~~~i~~v~-q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 81 NRKLGFVF-QFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHEEEEC-SSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred hCcEEEEe-cCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 2366644 433222 236899998776554443322233456777776665 3567888999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||+..+..+.+++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.98 E-value=1.7e-33 Score=248.67 Aligned_cols=159 Identities=12% Similarity=0.138 Sum_probs=124.5
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------CC
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----------~~ 123 (229)
.+++++|+|.|++..+ |++||+++|+||||||||||||+|+|++ +|++|++. ++..+ ..
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE---QPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS---CCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC---CCCCcEEEECCEECcccccccchhhC
Confidence 4678889999987643 8899999999999999999999999999 99999953 33221 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
.+|+++ +++..+ +.+++.+|+.+.....+.........+.++++.++. ..+.++.+|||||||||++||||+.+|
T Consensus 81 ~ig~vf-Q~~~l~--p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 81 RLGYLV-QEGVLF--PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp CCEEEC-TTCCCC--TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEe-CCCcCC--CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 467754 443322 237899998775544444444445567778886664 467889999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
++|||||||++||+..+.++++.+.
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999887553
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.98 E-value=5.3e-33 Score=245.86 Aligned_cols=162 Identities=18% Similarity=0.147 Sum_probs=129.6
Q ss_pred ccchhhhhhhhhcCCc-----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------
Q 026996 60 QNKTSLKVLCSQRREI-----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------ 121 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~------ 121 (229)
...+++++|++.|++. +.|++||++||+||||||||||+|+|+|++ +|++|++ +++..+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~---~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC---CCCceEEEECCEECCcCCHH
Confidence 3468889999999641 238999999999999999999999999999 9999996 444332
Q ss_pred -----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhh
Q 026996 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (229)
Q Consensus 122 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a 194 (229)
+..+|++++....+ ..+++.+|+.+.....+.........+.++++.++. ..+.++.+|||||||||++|
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~---~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLL---SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHTTEEEECSSCCCC---TTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccC---CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 23578865443332 237899999887776665444445567778886664 46788999999999999999
Q ss_pred hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 195 ~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||+.+|++||+||||++||+..+.++.+++..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.98 E-value=3.4e-33 Score=239.21 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=126.0
Q ss_pred chhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC----------C
Q 026996 62 KTSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK----------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~----------~ 122 (229)
.+++++|+++|++. +.|++||++||+||||||||||+|+|+|++ +|++|++. .+..+ .
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~---~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeEEEECCEECCcccccHHHHh
Confidence 47788888999643 228899999999999999999999999999 99999964 44332 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
..+|++++....... .+++.+++.+.....+.......+.+.++++.++. ..+.++.+||||||||+++|+|++.+
T Consensus 84 ~~ig~v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HSEEEECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246775443222222 26899998887666554433334566777776654 45788899999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++||+||||++||+..+.++.+++..
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~ 188 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVE 188 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=7.8e-33 Score=244.38 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=128.3
Q ss_pred cccchhhhhhhhhc-CCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CC
Q 026996 59 VQNKTSLKVLCSQR-REIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PP 123 (229)
Q Consensus 59 ~~~~~~~~~l~~~~-~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~ 123 (229)
+...+++++++++| ++.. .|++||+++|+||||||||||||+|+|++ +|++|++. ++..+ ..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i~~~~~~~r 87 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE---RPTKGDVWIGGKRVTDLPPQKR 87 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEECTTCCGGGS
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEECCEECCcCChhhC
Confidence 44567888999999 7653 28899999999999999999999999999 99999964 33222 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
.+|+++ ++...+ +.+++.+|+.+.....+.+.......+.++++.++. ..+.++.+||||||||+++|+|++.+|
T Consensus 88 ~ig~v~-Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 88 NVGLVF-QNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp SEEEEC-GGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEe-cCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 477754 443222 237999999887665554433334566777886654 457889999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||||||++||+..+.++++++..
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=6.8e-33 Score=232.27 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred hhhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------
Q 026996 63 TSLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP-------- 122 (229)
Q Consensus 63 ~~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~-------- 122 (229)
+++++|++.|++ . +.|++||++||+||||||||||+|+|+|++ +|++|++. ++..+.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD---KPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEEcccCCHHHHH
Confidence 345666777753 1 238999999999999999999999999999 99999964 443221
Q ss_pred ----CcEEEEeecCCccccCccCChhhhHHHHHHhc---CCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhh
Q 026996 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 123 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~ 192 (229)
..+|++++ +.... +.+++.+++.+..... ........+.+.++++.++.. .+.++.+||||||||++
T Consensus 79 ~~~~~~i~~v~Q-~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 79 KIRRDKIGFVFQ-QFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHEEEECT-TCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHhhccEEEEec-CCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 13677544 43222 2268999987765433 112222234556677766643 36788999999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|++.+|++||+||||++||+..+.++.+++..
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 190 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=7.1e-33 Score=234.98 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=124.8
Q ss_pred cccchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC-------CC
Q 026996 59 VQNKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------PP 123 (229)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------~~ 123 (229)
.+..+++++|+++|++.. .|++|++++|+||||||||||+|+|+|++ +|++|++. .+... ..
T Consensus 12 ~~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI---KPSSGIVTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEETTTCHHHHHT
T ss_pred cCCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCccHHHHhh
Confidence 456678888999998653 38899999999999999999999999999 99999964 33322 13
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
.++++. ++.... ..+++.+++.+.....+.........+.++++.++. ..+.++.+||||||||+++|+|++.+|
T Consensus 89 ~i~~v~-q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 165 (256)
T 1vpl_A 89 LISYLP-EEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 165 (256)
T ss_dssp TEEEEC-TTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEc-CCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 467754 433222 236899998876544443322223456677776654 356788899999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++||+..+.++.+++..
T Consensus 166 ~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=6.3e-33 Score=236.16 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=123.2
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC----------C
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP----------P 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~----------~ 123 (229)
.+++++|++.|++.. .|++|++++|+||||||||||+|+|+|++ +|++|++. .+..+. .
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE---DFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC---CCCCcEEEECCEECCCccccHHHHhC
Confidence 578899999998753 28899999999999999999999999999 99999964 332221 1
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHH-HhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcC
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
.+++++ ++.... ..+++.+++.+.. ...+.........+.++++.++. ..+.++.+||||||||+++|+|++.+
T Consensus 101 ~i~~v~-Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 101 EVGMVF-QRFNLF--PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HEEEEC-SSCCCC--TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEe-CCCcCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence 366644 443222 2368999987753 33333222223456677776654 35778889999999999999999999
Q ss_pred CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+||||++||+..+.++.+++.+
T Consensus 178 p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 10
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=1.8e-32 Score=226.77 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=123.1
Q ss_pred cchhhhhhhhhcCCc------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-C---CCCcEEEEee
Q 026996 61 NKTSLKVLCSQRREI------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-V---KPPDVATVLP 130 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~---~~~~~g~~i~ 130 (229)
..++++++++.|++. +.|++|++++|+||||||||||+|+|+|++ +|++|++..++ . ....++++.
T Consensus 9 ~~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~~~~~~~i~~v~- 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL---KPLKGEIIYNGVPITKVKGKIFFLP- 84 (214)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEGGGGGGGEEEEC-
T ss_pred ceEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEhhhhcCcEEEEe-
Confidence 346778888888761 238899999999999999999999999999 99999964433 2 123467644
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC-CCCCCCCCccccchhhhhhhhhcCCcEEEEcCC
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~ 209 (229)
++.... ..+++.+++.+.....+. .. ....+.++++.++... +.++.+||||||||+++|+|++.+|+++|+|||
T Consensus 85 q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 85 EEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp SSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred CCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 443322 236889998776544443 22 2456777888776533 677889999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHh
Q 026996 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~~~LD~~~~~~~~~ll~~ 227 (229)
|++||+..+.++.+++.+
T Consensus 161 ts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 161 VVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp TTTSCTTTHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHH
Confidence 999999999999998864
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.2e-32 Score=234.22 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=122.3
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC-----------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP----------- 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~----------- 122 (229)
.++++++++.|++.. .|++|+++||+||||||||||+|+|+|++ +|++|++. .+..+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEccccccccccccc
Confidence 467788888887653 38899999999999999999999999999 99999964 343221
Q ss_pred ----------CcEEEEeecCCccccCccCChhhhHHHHH-HhcCCCCCccHHHHHHHHHhhhh--c-CCCCCCCCCcccc
Q 026996 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--Q-GSVYAPSFDHGVG 188 (229)
Q Consensus 123 ----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~--~-~~~~~~~lSgG~k 188 (229)
..+|+++ ++.... ..+++.+++.+.. ...+.........+.++++.++. . .+.++.+||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~-Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~ 159 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVF-QHFNLW--SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 159 (262)
T ss_dssp SCHHHHHHHHHHEEEEC-SSCCCC--TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHH
T ss_pred cChhhHHHHhcceEEEe-cCcccC--CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHH
Confidence 1356644 443222 2368999987743 33333222223456677776664 3 5778899999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++|+|++.+|+++|+||||++||+..+..+.+++..
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.4e-32 Score=243.39 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=125.6
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEE
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATV 128 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~ 128 (229)
+++++++++|++.. .+++|++++|+||||||||||||+|+|++ +|++|++. ++..+ ...+|++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY---KPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC---CCCceEEEECCEECCcCCHhHCcEEEE
Confidence 56778888887653 28899999999999999999999999999 99999964 33222 2357775
Q ss_pred eecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEE
Q 026996 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 129 i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illl 206 (229)
+ ++...+ +.+++.+|+.+.....+.+.......+.++++.++. ..+.++.+||||||||+++|+|++.+|+++||
T Consensus 81 ~-Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 81 F-QNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp C-TTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred e-cCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4 443322 237999999887665554433334566778887665 35778889999999999999999999999999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
||||++||+..+.++++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=8.9e-33 Score=244.45 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=123.1
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVAT 127 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~ 127 (229)
.+++++++++|++.. .+++||+++|+||||||||||||+|+|++ +|++|++. ++..+ ...+|+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY---KPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC---CCCccEEEECCEECCCCChhhCcEEE
Confidence 356778888887653 28899999999999999999999999999 99999964 33222 235777
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ ++...+ +.+++.+|+.+.....+.+.......+.++++.++. ..+.++.+||||||||+++|+|++.+|++||
T Consensus 80 v~-Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL 156 (359)
T 2yyz_A 80 VF-QNYALY--PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156 (359)
T ss_dssp EC-SSCCCC--TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred Ee-cCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54 443322 237899998765433332222223456777886654 4678889999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||||++||+..+.++++++..
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 157 FDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=1.9e-32 Score=243.48 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=125.4
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCC---------C---
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQV---------K--- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~---------~--- 121 (229)
.+++++++++|++.. .|++||+++|+||||||||||||+|+|++ +|++|++.. +.. .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC---CCCccEEEECCEECccccccccCCHh
Confidence 366788888897653 28899999999999999999999999999 999999643 321 1
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhc
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
...+|+++ ++...+ +.+++.+|+.+.....+.........+.++++.++. ..+.++.+||||||||+++|+||+.
T Consensus 80 ~r~ig~v~-Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 80 DRDIAMVF-QSYALY--PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp GSSEEEEC-SCCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred HCCEEEEe-CCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 23467754 443322 237999999887665554433334556777776654 4678889999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++|||||||++||+..+.++++++..
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.7e-32 Score=243.68 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=121.1
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEE
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVAT 127 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~ 127 (229)
.+++++++++|++.. .|++||+++|+||||||||||||+|+|++ +|++|++. ++..+ ...+|+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCceEEEECCEECCCCChhhCcEEE
Confidence 477888999998653 28899999999999999999999999999 99999964 43222 234777
Q ss_pred EeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEE
Q 026996 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 128 ~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~ill 205 (229)
++ ++...+ +.+++.+|+.+.....+.........+.++++.++. ..+.++.+||||||||+++|+||+.+|++||
T Consensus 88 v~-Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 164 (372)
T 1v43_A 88 VF-QSYAVW--PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164 (372)
T ss_dssp EE-C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred Ee-cCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 443322 237899988764333333222223456777776654 4678899999999999999999999999999
Q ss_pred EcCCcCCCChhhHHHHHHHHHh
Q 026996 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 lDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|||||++||+..+.++++++..
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHH
T ss_pred EcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=2.1e-32 Score=232.08 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=120.6
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.+++++++++|++.. .|++|++++|+||||||||||+|+|+|++ +|++|++. .+.... ..
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHHHhCC
Confidence 477888899998753 38899999999999999999999999999 99999964 343221 13
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHh--cC-----------CCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccc
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~ 189 (229)
++++ .++.... ..+++.+++.+.... .+ .........+.++++.++. ..+.++.+|||||||
T Consensus 84 i~~v-~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRT-FQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK 160 (257)
T ss_dssp EEEC-CCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred EEEE-ccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHH
Confidence 5663 4443222 236888887654221 12 1111223456677776654 357888999999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|+|++.+|+++|+||||++||+..+.++.+++..
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.8e-32 Score=227.25 Aligned_cols=159 Identities=16% Similarity=0.064 Sum_probs=119.5
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.+++++++++|++.. .|++|++++|+||||||||||+|+|+|++ +|++|++. .+.... ..
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV---RAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCCCCHHHHHhCC
Confidence 467788888887652 38899999999999999999999999999 99999964 443221 23
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---hcCCCCCCCCCccccchhhhhhhhhcCC
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~k~Rl~~a~al~~~~ 201 (229)
++++. ++.... ..+++.+++.+... ...........+.++++.++ ...+.++.+||||||||+++|+|++.+|
T Consensus 83 i~~v~-q~~~l~--~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 83 IALVP-EGRRIF--PELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp EEEEC-SSCCCC--TTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEe-cCCccC--CCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 67744 443222 23688888765421 11122222344566666553 3457889999999999999999999999
Q ss_pred cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 ~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|+||||++||+..+..+.+++..
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=1.4e-32 Score=242.98 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=122.0
Q ss_pred hhhhhhhhhcCCcc---------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCC--------C---
Q 026996 63 TSLKVLCSQRREIP---------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQV--------K--- 121 (229)
Q Consensus 63 ~~~~~l~~~~~~~~---------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~--------~--- 121 (229)
++++++++.|++.. .|++||+++|+||||||||||||+|+|++ +|++|++. ++.. .
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD---VPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS---CCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECcccccccCChh
Confidence 56677788887643 28899999999999999999999999999 99999964 3321 1
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhc
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
...+|+++ ++...+ +.+++.+|+.+.....+.+.......+.++++.++. ..+.++.+||||||||+++|+||+.
T Consensus 81 ~r~ig~v~-Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 81 DRKIGMVF-QTWALY--PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GSCEEEEE-TTSCCC--TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCCEEEEe-CCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 23467754 443322 237899998765443333322234456777776654 4578889999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++|||||||++||+..+.++++++..
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=6.4e-32 Score=230.30 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=121.8
Q ss_pred chhhhhhhhhcCCccc-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------CcE
Q 026996 62 KTSLKVLCSQRREIPV-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP--------PDV 125 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~--------~~~ 125 (229)
.++++++++.|++..+ |++||++||+||||||||||+|+|+|++ +|++|++. .+..+. ...
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL---SPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS---CCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECCcCCHHHHhheE
Confidence 5778888888887633 8899999999999999999999999999 99999964 443321 125
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhc----
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL---- 199 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~---- 199 (229)
+++. ++..... .+++.+++.+..... ........+.++++.++.. .+.++.+||||||||+++|+|++.
T Consensus 88 ~~v~-q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 88 AVMR-QYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp EEEC-SCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred EEEe-cCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 6644 4332222 268888876543222 2233455677788877653 467788999999999999999999
Q ss_pred --CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 --QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 --~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|++||+||||++||+..+.++.+++..
T Consensus 163 ~~~p~lLllDEPts~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp SCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=1e-31 Score=236.87 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=122.8
Q ss_pred hhhhhhhhhcCCc------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEe
Q 026996 63 TSLKVLCSQRREI------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVL 129 (229)
Q Consensus 63 ~~~~~l~~~~~~~------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i 129 (229)
+++++++++|++. +.+++||+++|+||||||||||||+|+|++ +|++|++. ++..+ ...+|+++
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH---VPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS---CCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred EEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC---CCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 3566778888763 238899999999999999999999999999 99999964 33322 12467754
Q ss_pred ecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
++...+ +.+++.+|+.+.....+.... ..+.++++.++. ..+.++.+||||||||+++|+|++.+|++||||
T Consensus 79 -Q~~~l~--~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 79 -QNYSLF--PHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp -TTCCCC--TTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred -cCcccC--CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 443322 237999999887665544332 567778887665 357888999999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
|||++||+..+.++++++..
T Consensus 153 EP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=7.8e-32 Score=229.73 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=120.2
Q ss_pred hhhhhhhhhcC--C---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-----CCc
Q 026996 63 TSLKVLCSQRR--E---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-----PPD 124 (229)
Q Consensus 63 ~~~~~l~~~~~--~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-----~~~ 124 (229)
++++++++.|+ + . +.|++|++++|+||||||||||+|+|+|++ +|++|++.. +... ...
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~---~p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEECCEECchHHhhhh
Confidence 45667777775 3 2 238899999999999999999999999999 999999644 3322 234
Q ss_pred EEEEeecCC-ccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc----CCCCCCCCCccccchhhhhhhhhc
Q 026996 125 VATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 125 ~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
+|++. ++. .... .+++.+++.+..... .........+.++++.++.. .+.++.+||||||||+++|+|++.
T Consensus 80 i~~v~-q~~~~~~~--~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 80 IGIAF-QYPEDQFF--AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp EEEEC-SSGGGGCC--CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEEe-ccchhhcC--CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 67644 442 1112 268888887643222 23333455677788876654 578889999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+++|+||||++||+..+..+.+++..
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~ 183 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEK 183 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=6.8e-32 Score=231.60 Aligned_cols=163 Identities=14% Similarity=-0.016 Sum_probs=120.8
Q ss_pred cchhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC----------
Q 026996 61 NKTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------- 122 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------- 122 (229)
..+++++|++.|++.. .|++||+++|+||||||||||+|+|+|++ +|++|++. .+....
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE---PATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCeEEEECCEEcccccCCHHHHc
Confidence 3588899999998753 28899999999999999999999999999 99999964 443322
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHh----cCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~a 196 (229)
..++++. ++........+++.+++.+.... .+.........+.++++.++. ..+.++.+||||||||+++|+|
T Consensus 97 ~~i~~v~-Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVS-HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEEC-HHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEE-cCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 2466654 33221122225888887653111 111111223456677776654 3578889999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|++||+||||++||+..+.++.+++.+
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 206 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDS 206 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=1.5e-31 Score=226.53 Aligned_cols=156 Identities=15% Similarity=0.068 Sum_probs=119.8
Q ss_pred chhhhhhhhhcC-Ccc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 62 KTSLKVLCSQRR-EIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
.++++++++.|+ +.. .|++|++++|+||||||||||+|+|+|++ +|++|++.. ...++++.+ +.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~----~~~i~~v~q-~~ 75 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH---RPIQGKIEV----YQSIGFVPQ-FF 75 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS---CCSEEEEEE----CSCEEEECS-CC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEE----eccEEEEcC-CC
Confidence 366778888887 542 38899999999999999999999999999 899999762 345777544 33
Q ss_pred ccccCccCChhhhHHHHHHhc-CC---CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEc
Q 026996 134 FHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlD 207 (229)
.... .+++.+++.+..... +. ........+.++++.++. ..+.++.+||||||||+++|+|++.+|+++|+|
T Consensus 76 ~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 76 SSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred ccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 2222 268888876643211 21 122223456677776654 357788899999999999999999999999999
Q ss_pred CCcCCCChhhHHHHHHHHHh
Q 026996 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 e~~~~LD~~~~~~~~~ll~~ 227 (229)
|||++||+..+..+.+++..
T Consensus 154 EPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999999999998864
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=1e-31 Score=225.88 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=114.7
Q ss_pred hhhhhhhhhcCCc-----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC------CCcEEEEee
Q 026996 63 TSLKVLCSQRREI-----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK------PPDVATVLP 130 (229)
Q Consensus 63 ~~~~~l~~~~~~~-----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~------~~~~g~~i~ 130 (229)
++++++++.|++. +.+++ ++++|+||||||||||+|+|+|++ +|++|++. ++... ...+|++ .
T Consensus 2 l~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~i~~v-~ 76 (240)
T 2onk_A 2 FLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV---KPDRGEVRLNGADITPLPPERRGIGFV-P 76 (240)
T ss_dssp CEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECTTSCTTTSCCBCC-C
T ss_pred EEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCchhhCcEEEE-c
Confidence 3456677777653 34889 999999999999999999999999 99999964 33221 2235553 3
Q ss_pred cCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCcEEEEcC
Q 026996 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe 208 (229)
++.... ..+++.+++.+.....+. ......+.++++.++.. .+.++.+||||||||+++|+|++.+|+++|+||
T Consensus 77 q~~~l~--~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 77 QDYALF--PHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp SSCCCC--TTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred CCCccC--CCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333221 236788887643211111 11234566777766643 467888999999999999999999999999999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
||++||+..+..+.+++.+
T Consensus 153 Pts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=7.8e-31 Score=221.62 Aligned_cols=160 Identities=19% Similarity=0.076 Sum_probs=113.0
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCcccc-CCCCCC---------
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSF-DSQVKP--------- 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl--~~~~~p~~G~~~-~~~~~~--------- 122 (229)
.+++++++++|++.. .|++|++++|+||||||||||+|+|+|+ + +|++|++. .+....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~---~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY---TVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC---EEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCceEEEECCEECCCCCHHHHHh
Confidence 356778888887652 3889999999999999999999999998 6 79999964 333221
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHh-cCCCC--CccHHHHHHHHHhhhh---cCCCCCCC-CCccccchhhhhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRN---QGSVYAPS-FDHGVGDPVEDDI 195 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~g~~~--~~~~~~~~~~l~~l~~---~~~~~~~~-lSgG~k~Rl~~a~ 195 (229)
...++ +.++.... ..+++.+++.+.... .+... ......+.++++.++. ..+.++.+ ||||||||+++|+
T Consensus 80 ~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 80 KGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp TTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred CcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 11333 33333222 236788887664422 22111 1123455667776665 24677888 9999999999999
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|++.+|+++|+||||++||+..+..+.+++..
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 188 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=3.5e-30 Score=219.65 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=117.0
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC---------Cc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP---------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~---------~~ 124 (229)
.+++++|++.|++.. .|++|++++|+||||||||||+|+|+|++. ..|++|++. .+..+. ..
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT-CEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 477888999997653 388999999999999999999999999830 158999964 332221 12
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHh----cCCCC---CccHHHHHHHHHhhhhc---CCCCCC-CCCccccchhhh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGDPVED 193 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~g~~~---~~~~~~~~~~l~~l~~~---~~~~~~-~lSgG~k~Rl~~ 193 (229)
++++ .++.... ..+++.+++...... .+... ......+.++++.++.. .+.++. .||||||||+++
T Consensus 99 i~~v-~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 99 IFMA-FQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp EEEE-CSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred EEEE-ccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 4554 3443322 236777777654311 22211 11123466777777653 356666 599999999999
Q ss_pred hhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+|++.+|+++|+||||++||+..+..+.+++..
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 209 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=9e-30 Score=214.79 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=113.3
Q ss_pred ccchhhhhhhhhc--CCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC-------
Q 026996 60 QNKTSLKVLCSQR--REIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP------- 122 (229)
Q Consensus 60 ~~~~~~~~l~~~~--~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~------- 122 (229)
...+++++|+++| ++.. .|++|++++|+||||||||||+|+|+|++ +|++|++. ++..+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEETTTSCHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEhhhCCHHHH
Confidence 3457788888888 3432 38899999999999999999999999999 99999964 443221
Q ss_pred -CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh-------------cCCCCCCCCCcccc
Q 026996 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVG 188 (229)
Q Consensus 123 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~k 188 (229)
..++++ .++..... .++.+++.+. .. ......+.++++.++. ..+.++..||||||
T Consensus 82 ~~~i~~v-~Q~~~l~~---~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 82 RRQVGVV-LQDNVLLN---RSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp HHHEEEE-CSSCCCTT---SBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred HhcEEEE-eCCCcccc---ccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 135664 44443222 4777776542 11 1223344444443321 12345689999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++|+|++.+|+++|+||||++||+..+..+.+++.+
T Consensus 152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=7.3e-30 Score=217.23 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=115.5
Q ss_pred hhhhhhhhcCC----c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC-C-----CCCcEE
Q 026996 64 SLKVLCSQRRE----I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-V-----KPPDVA 126 (229)
Q Consensus 64 ~~~~l~~~~~~----~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~-~-----~~~~~g 126 (229)
+++++++.|++ . +.++ |++++|+||||||||||+|+|+|++ |++|++..++ . .....+
T Consensus 3 ~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 3 QLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTTEE
T ss_pred EEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhheE
Confidence 45556666654 2 3389 9999999999999999999999975 8999964332 1 123466
Q ss_pred -EEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 127 -TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 127 -~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
+ +.++... .+++.+++.+..... ......+.++++.++.. .+.++.+||||||||+++|+|++.+|+
T Consensus 78 ~~-v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 148 (263)
T 2pjz_A 78 TN-LPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPE 148 (263)
T ss_dssp EC-CGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EE-eCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 5 4444332 368889887754332 22345677788877654 467888999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|+||||++||+..+.++.+++..
T Consensus 149 lllLDEPts~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 149 IVGLDEPFENVDAARRHVISRYIKE 173 (263)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred EEEEECCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=1.4e-29 Score=212.99 Aligned_cols=153 Identities=17% Similarity=0.089 Sum_probs=110.0
Q ss_pred hhhhhhhhhc-CCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCcE
Q 026996 63 TSLKVLCSQR-REI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPDV 125 (229)
Q Consensus 63 ~~~~~l~~~~-~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~~ 125 (229)
++++++++.| ++. +.|++|++++|+||||||||||+|+|+|++ +|++|++. ++..+ ...+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY---QPTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS---CCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEhhhCCHHHHHhhE
Confidence 3456677777 433 238899999999999999999999999999 89999963 33211 2346
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcC-------------CCCCCCCCccccchhh
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGVGDPVE 192 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-------------~~~~~~lSgG~k~Rl~ 192 (229)
+++. ++..... .++.+|+.+.. ........+.++++.++... +.++..||||||||++
T Consensus 79 ~~v~-q~~~l~~---~tv~enl~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 79 GFVS-QDSAIMA---GTIRENLTYGL-----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp CEEC-CSSCCCC---EEHHHHTTSCT-----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred EEEc-CCCcccc---ccHHHHHhhhc-----cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 6643 4433221 36777654321 11223345556666554321 2345799999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|++.+|+++|+||||++||+..+..+.+++..
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764
No 30
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=3.3e-30 Score=216.19 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=109.2
Q ss_pred chhhhhhhhhcC--Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 62 KTSLKVLCSQRR--EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 62 ~~~~~~l~~~~~--~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
.+++++++++|+ +. +.|++|++++|+||||||||||+|+|+|++ +|++|++..++ .++++ .++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g----~i~~v-~Q~ 74 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM---DKVEGHVAIKG----SVAYV-PQQ 74 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS---EEEEEEEEECS----CEEEE-CSS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECC----EEEEE-cCC
Confidence 356777888886 23 238899999999999999999999999999 89999965443 36764 444
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHH---Hhhhh-------cCCCCCCCCCccccchhhhhhhhhcCCc
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---KNLRN-------QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l---~~l~~-------~~~~~~~~lSgG~k~Rl~~a~al~~~~~ 202 (229)
... . ..++.+++.+.. ... ......+.+.+ +.+.. ..+.++..||||||||+++|+|++.+|+
T Consensus 75 ~~~-~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 75 AWI-Q--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp CCC-C--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred CcC-C--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 432 2 257888775421 111 11122222222 12221 1356788999999999999999999999
Q ss_pred EEEEcCCcCCCChhhHHHHHHHH
Q 026996 203 VVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 203 illlDe~~~~LD~~~~~~~~~ll 225 (229)
++|+||||++||+..+..+.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHT
T ss_pred EEEEeCcccccCHHHHHHHHHHH
Confidence 99999999999999999999887
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=4.6e-30 Score=219.35 Aligned_cols=157 Identities=16% Similarity=0.116 Sum_probs=112.8
Q ss_pred chhhhhhhhhcCC---c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------C
Q 026996 62 KTSLKVLCSQRRE---I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~---~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~ 122 (229)
.+++++|++.|++ . +.|++|++++|+||||||||||+|+|+|++ +|++|++.. +..+ .
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY---QPTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEGGGBCHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEcccCCHHHHh
Confidence 4677888888865 3 238999999999999999999999999999 999999643 3222 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHH------HHHHHHHhh----hhcCCCCCCCCCccccchhh
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL------LLLNCLKNL----RNQGSVYAPSFDHGVGDPVE 192 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~------~~~~~l~~l----~~~~~~~~~~lSgG~k~Rl~ 192 (229)
..++++ .++.... . .++.+++.+... ......... .+.++++.+ ....+.++..|||||+||++
T Consensus 93 ~~i~~v-~Q~~~l~-~--~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 93 TQVAAV-GQEPLLF-G--RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHEEEE-CSSCCCC-S--SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHH
T ss_pred ccEEEE-ecCCccc-c--ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHH
Confidence 236664 4444322 2 478887754211 111100011 112334433 22346778899999999999
Q ss_pred hhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+|+|++.+|++||+||||++||+..+..+.+++..
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=1e-28 Score=206.09 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=105.1
Q ss_pred chhhhhhhhhcC--Cc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecC
Q 026996 62 KTSLKVLCSQRR--EI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 132 (229)
Q Consensus 62 ~~~~~~l~~~~~--~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~ 132 (229)
.++++++++.|+ +. +.|++|++++|+||||||||||+|+|+|++ +|++|++..++ .++++. ++
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g----~i~~v~-q~ 77 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL---EPSEGKIKHSG----RISFCS-QF 77 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEECS----CEEEEC-SS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---cCCccEEEECC----EEEEEe-cC
Confidence 467778888884 23 238899999999999999999999999999 99999975543 366644 44
Q ss_pred CccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------h----cCCCCCCCCCccccchhhhhhhhhc
Q 026996 133 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~lSgG~k~Rl~~a~al~~ 199 (229)
..... .++.+++.+. ... ......+.++.++ . ....++..||||||||+++|+|++.
T Consensus 78 ~~~~~---~tv~enl~~~-----~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 78 SWIMP---GTIKENIIFG-----VSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp CCCCS---BCHHHHHHTT-----SCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred CcccC---CCHHHHhhcc-----CCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 33222 3777776532 111 1111222222111 1 1123467999999999999999999
Q ss_pred CCcEEEEcCCcCCCChhhHHHHHHH
Q 026996 200 QHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 200 ~~~illlDe~~~~LD~~~~~~~~~l 224 (229)
+|+++|+||||++||+..+..+.++
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHH
Confidence 9999999999999999999999886
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=3.6e-29 Score=217.09 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=112.4
Q ss_pred chhhhhhhhhcCC-cc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------Cc
Q 026996 62 KTSLKVLCSQRRE-IP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP--------PD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~-~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~--------~~ 124 (229)
.+++++|+++|++ .. .|++|+++||+||||||||||+|+|+|++ .|++|++. ++..+. ..
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~---~p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY---DISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS---CCSEEEEEETTEETTSBCHHHHHHT
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC---CCCCcEEEECCEEcccCCHHHHhcc
Confidence 4788899999953 32 38899999999999999999999999999 99999964 443331 24
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh-------------cCCCCCCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~k~Rl 191 (229)
++++ .++...+. .++.+|+.+.. .. .....+.++++..+. ........||||||||+
T Consensus 130 i~~v-~Q~~~lf~---~Tv~eNi~~~~-----~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 130 IGVV-PQDTVLFN---DTIADNIRYGR-----VT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp EEEE-CSSCCCCS---EEHHHHHHTTS-----TT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred eEEE-ecCCccCc---ccHHHHHHhhc-----cc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 6774 45544332 47888765421 11 122333333332211 12345678999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||++.+|+||||||||++||+.....+.+.+..
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988764
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=2e-28 Score=207.97 Aligned_cols=153 Identities=13% Similarity=0.013 Sum_probs=110.8
Q ss_pred cchhhhhhhhhcCCc----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------
Q 026996 61 NKTSLKVLCSQRREI----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK-------- 121 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~-------- 121 (229)
..++++++++.|++. +.|++|++++|+||||||||||+|+|+|++ +| +|++. ++..+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY---DA-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CC-EEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC---CC-CeEEEECCEEhhhcCHHHH
Confidence 347788888888752 238899999999999999999999999998 66 89964 33222
Q ss_pred CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh---------c----CCCCCCCCCcccc
Q 026996 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG 188 (229)
Q Consensus 122 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lSgG~k 188 (229)
...++++ .++.... . .++.+|+.+. ... .....+.+.++.++. . .+.++..||||||
T Consensus 92 ~~~i~~v-~Q~~~l~-~--~tv~enl~~~-----~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 92 RSIIGIV-PQDTILF-N--ETIKYNILYG-----KLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HTTEEEE-CSSCCCC-S--EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred hccEEEE-cCCCccc-c--cCHHHHHhcc-----CCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 2346764 4444322 2 3777776542 111 123334444433221 0 1346789999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++|+|++.+|+++|+||||++||+..+..+.+++.+
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=3.2e-28 Score=205.52 Aligned_cols=140 Identities=19% Similarity=0.045 Sum_probs=107.4
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC--------CCcEEEEeecCCccccCccCChhhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------PPDVATVLPMDGFHLYLSQLDAMED 146 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~--------~~~~g~~i~~~~~~~~~~~l~~~~~ 146 (229)
+.|++|++++|+||||||||||+|+|+|++ +|+ |++.. +... ...++++. ++.... ..+++.++
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~-q~~~~~--~~~tv~e~ 93 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGK-GSIQFAGQPLEAWSATKLALHRAYLS-QQQTPP--FATPVWHY 93 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS---CCE-EEEEETTEEGGGSCHHHHHHHEEEEC-SCCCCC--TTCBHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCC-eEEEECCEECCcCCHHHHhceEEEEC-CCCccC--CCCcHHHH
Confidence 459999999999999999999999999999 899 99643 3222 12366644 443322 22678888
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc-------EEEEcCCcCCCChhh
Q 026996 147 PKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK-------VVIVDGNYLFLDGGV 217 (229)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~-------illlDe~~~~LD~~~ 217 (229)
+.+.. ... .....+.++++.++. ..+.++.+||||||||+++|+|++.+|+ ++|+||||++||+..
T Consensus 94 l~~~~----~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~ 168 (249)
T 2qi9_C 94 LTLHQ----HDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ 168 (249)
T ss_dssp HHTTC----SST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHH
T ss_pred HHHhh----ccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHH
Confidence 76421 111 124566777776654 3577888999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHh
Q 026996 218 WKDVSSMFDE 227 (229)
Q Consensus 218 ~~~~~~ll~~ 227 (229)
+..+.+++..
T Consensus 169 ~~~l~~~l~~ 178 (249)
T 2qi9_C 169 QSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.5e-28 Score=218.15 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=114.2
Q ss_pred cchhhhhhhhhc--CCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------
Q 026996 61 NKTSLKVLCSQR--REIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------- 122 (229)
Q Consensus 61 ~~~~~~~l~~~~--~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~-------- 122 (229)
..+++++|++.| ++.. .|++||+++|+||||||||||||+|+|++ . ++|++ +++..+.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---N-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS---E-EEEEEEESSCBTTSSCHHHHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC---C-CCeEEEECCEECCcCChHHHh
Confidence 347888999999 4442 38899999999999999999999999998 6 88996 4443331
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCC-----------CCccccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPS-----------FDHGVGD 189 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~-----------lSgG~k~ 189 (229)
..++++ .+++..+. .++.+|+.. ........+.++++.++. ..+.++.. |||||||
T Consensus 94 r~ig~v-~Q~~~lf~---~tv~enl~~-------~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 94 KAFGVI-PQKVFIFS---GTFRKNLDP-------NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp HTEEEE-SCCCCCCS---EEHHHHHCT-------TCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred CCEEEE-cCCcccCc---cCHHHHhhh-------ccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHH
Confidence 346764 44443322 367666531 112334556667775553 33555555 9999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||||+.+|++|||||||++||+..+.++++++..
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998865
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=1.2e-26 Score=199.92 Aligned_cols=145 Identities=13% Similarity=0.140 Sum_probs=95.0
Q ss_pred chhhhhhhhhcCCc-----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccc
Q 026996 62 KTSLKVLCSQRREI-----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 136 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~ 136 (229)
.++++++++.+... +.|++|++++|+||||||||||+|+|+|++ +|++|++..++ .++++ .++....
T Consensus 40 ~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g----~i~~v-~Q~~~l~ 111 (290)
T 2bbs_A 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL---EPSEGKIKHSG----RISFC-SQNSWIM 111 (290)
T ss_dssp ----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS---CEEEEEEECCS----CEEEE-CSSCCCC
T ss_pred eEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECC----EEEEE-eCCCccC
Confidence 46677777654222 348999999999999999999999999999 89999975543 36664 4443322
Q ss_pred cCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhh---------hhc----CCCCCCCCCccccchhhhhhhhhcCCcE
Q 026996 137 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l---------~~~----~~~~~~~lSgG~k~Rl~~a~al~~~~~i 203 (229)
. .++.+++. . ... ........++.+ ... ...++..||||||||+++|+|++.+|++
T Consensus 112 ~---~tv~enl~-~-----~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 112 P---GTIKENII-G-----VSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp S---SBHHHHHH-T-----TCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred c---ccHHHHhh-C-----ccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 2 37777764 1 111 111122222211 111 1234579999999999999999999999
Q ss_pred EEEcCCcCCCChhhHHHHHHHH
Q 026996 204 VIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 204 lllDe~~~~LD~~~~~~~~~ll 225 (229)
+|+||||++||+..+..+.+++
T Consensus 181 llLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHC
T ss_pred EEEECCcccCCHHHHHHHHHHH
Confidence 9999999999999999998863
No 38
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=9.8e-27 Score=215.77 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=115.9
Q ss_pred ccchhhhhhhhhcCCccc------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 60 QNKTSLKVLCSQRREIPV------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
...++++++++.|++... |++||++||+||||||||||+|+|+|++ +|++|++.... ...++ +.++.
T Consensus 267 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~~---~~i~~-~~q~~ 339 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI---TADEGSVTPEK---QILSY-KPQRI 339 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS---CCSBCCEESSC---CCEEE-ECSSC
T ss_pred cceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECC---eeeEe-echhc
Confidence 345777888889987622 6899999999999999999999999999 99999975432 23555 33333
Q ss_pred ccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 134 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
+.. ...++.+++.... .... ......+.++++.++. ..+.++.+|||||||||++|++++.+|++||+||||+
T Consensus 340 ~~~--~~~tv~~~l~~~~--~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~ 414 (538)
T 3ozx_A 340 FPN--YDGTVQQYLENAS--KDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSS 414 (538)
T ss_dssp CCC--CSSBHHHHHHHHC--SSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred ccc--cCCCHHHHHHHhh--hhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 221 1256777665421 1111 1122334555554443 4578899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh
Q 026996 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 ~LD~~~~~~~~~ll~~ 227 (229)
+||...+.++.+++.+
T Consensus 415 gLD~~~~~~i~~~l~~ 430 (538)
T 3ozx_A 415 YLDVEERYIVAKAIKR 430 (538)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988864
No 39
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=2.1e-26 Score=216.22 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=117.0
Q ss_pred ccchhhhhhhhhcCCc-cc-----ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 60 QNKTSLKVLCSQRREI-PV-----VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-~~-----i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
...++++++++.|++. +. |.+||++||+||||||||||+|+|+|++ +|++|++.. ...++++. ++.
T Consensus 355 ~~~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~---~p~~G~I~~----~~~i~~v~-Q~~ 426 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE---EPTEGKVEW----DLTVAYKP-QYI 426 (607)
T ss_dssp CEEEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS---CCSBSCCCC----CCCEEEEC-SSC
T ss_pred ceEEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEE----eeEEEEEe-cCc
Confidence 3467788899999876 22 5799999999999999999999999999 999999754 23567644 443
Q ss_pred ccccCccCChhhhHHHH-HHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCc
Q 026996 134 FHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~ 210 (229)
... ..+++.+++... .... .....+.++++.++. ..+.++.+|||||||||++|++|+.+|++||+||||
T Consensus 427 ~~~--~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 427 KAE--YEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp CCC--CSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 221 225776665443 1111 123445666676654 356788899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHh
Q 026996 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 ~~LD~~~~~~~~~ll~~ 227 (229)
++||...+.++.+++..
T Consensus 500 ~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.93 E-value=1.7e-26 Score=216.15 Aligned_cols=154 Identities=17% Similarity=0.114 Sum_probs=114.2
Q ss_pred chhhhhhhhhcCC--cc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--IP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++++|++ .. .+++||+++|+||||||||||+|+|+|++ .|++|++. ++.+. ..
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY---DVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEhhhCCHHHHhc
Confidence 4778888888874 32 28899999999999999999999999999 99999964 44322 23
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc-------------CCCCCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lSgG~k~R 190 (229)
..++ +.++..... .++.+|+.+... + ..+.+++.++++.++.. .......||||||||
T Consensus 418 ~i~~-v~Q~~~l~~---~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr 488 (582)
T 3b5x_A 418 HFAL-VSQNVHLFN---DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488 (582)
T ss_pred CeEE-EcCCCcccc---ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHH
Confidence 4666 455554322 378888764310 1 12334455555533221 123456899999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+....++.+.+..
T Consensus 489 ~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765
No 41
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=3.1e-26 Score=212.56 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=116.3
Q ss_pred ccchhhhhhhhhcCCc-cc-----ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC
Q 026996 60 QNKTSLKVLCSQRREI-PV-----VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 133 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-~~-----i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 133 (229)
...++++++++.|++. +. |.+||++||+||||||||||+|+|+|++ +|++|++.. ...++++ .++.
T Consensus 285 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~---~p~~G~i~~----~~~i~~v-~Q~~ 356 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE---EPTEGKIEW----DLTVAYK-PQYI 356 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS---CCSBCCCCC----CCCEEEE-CSSC
T ss_pred CeEEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEE----CceEEEE-ecCC
Confidence 4467788888889875 21 5799999999999999999999999999 999999754 2346764 4443
Q ss_pred ccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 134 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
... ..+++.+++...... .. .....+.++++.++. ..+.++..||||||||+++|++++.+|++||+||||+
T Consensus 357 ~~~--~~~tv~~~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 357 KAD--YEGTVYELLSKIDAS-KL---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp CCC--CSSBHHHHHHHHHHH-HH---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred cCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 322 225676655432111 11 123345556665544 4578889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh
Q 026996 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 ~LD~~~~~~~~~ll~~ 227 (229)
+||...+.++.+++.+
T Consensus 431 ~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 431 YLDVEQRLAVSRAIRH 446 (538)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.93 E-value=3.2e-26 Score=214.28 Aligned_cols=154 Identities=15% Similarity=0.120 Sum_probs=115.1
Q ss_pred chhhhhhhhhcCC--cc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------C
Q 026996 62 KTSLKVLCSQRRE--IP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------P 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~--------~ 123 (229)
.+++++++++|++ .. .+++||+++|+||||||||||+|+|+|++ .|++|++ +++.+.. .
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY---DIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT---CCSEEEEEETTEETTTBCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc---CCCCCeEEECCEEccccCHHHHHh
Confidence 4788889999973 32 28899999999999999999999999999 9999996 4443321 2
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh-------------cCCCCCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~k~R 190 (229)
..++ +.++..... .++.+|+.+... + ..+.+++.++++.++. ........||||||||
T Consensus 418 ~i~~-v~Q~~~l~~---~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qr 488 (582)
T 3b60_A 418 QVAL-VSQNVHLFN---DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 488 (582)
T ss_dssp TEEE-ECSSCCCCS---SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred hCeE-EccCCcCCC---CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 4666 455554332 378888764210 1 2234455555553321 1233567999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+....++.+.+.+
T Consensus 489 l~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=4.9e-26 Score=211.21 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=101.9
Q ss_pred hhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc----------cCCCCC--------
Q 026996 67 VLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQVK-------- 121 (229)
Q Consensus 67 ~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~----------~~~~~~-------- 121 (229)
+|+++|++.. .|++||++||+||||||||||+|+|+|++ .|++|++ +.+...
T Consensus 26 ~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~---~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL---IPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS---CCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred CcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 4566665531 26899999999999999999999999999 8999984 222211
Q ss_pred --CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhh
Q 026996 122 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al 197 (229)
....+.+++...........++.+++.. .. ....+.++++.++. ..+.++.+||||||||++||+|+
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL 173 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAAL 173 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHH
Confidence 0122332211111000000133333221 11 11234566776664 35678889999999999999999
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.+|++||+||||++||+..+.++.+++..
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999888864
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.92 E-value=3.6e-26 Score=214.44 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=114.5
Q ss_pred hhhhhhhhhcCCc----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------C
Q 026996 63 TSLKVLCSQRREI----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP--------P 123 (229)
Q Consensus 63 ~~~~~l~~~~~~~----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~--------~ 123 (229)
+++++++++|++. +.+++||++||+||||||||||+|+|+|++ .|++|++. ++.++. .
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY---DPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS---CCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCcEEEECCEEhhhCCHHHHHh
Confidence 7788888888642 128899999999999999999999999999 89999964 443321 2
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh---------cCCC----CCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~lSgG~k~R 190 (229)
..++ +.++..... .++.+|+.+.... ....+.+++.++++.++. +.+. ....||||||||
T Consensus 419 ~i~~-v~Q~~~l~~---~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 419 KIGT-VSQEPILFS---CSIAENIAYGADD---PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp SEEE-ECSSCCCCS---SBHHHHHHTTSSS---TTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred ceEE-EccCCcccC---CCHHHHHhhcCCC---ccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 4666 455554332 4788887642110 011334555555554331 1222 347999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+....++.+.+.+
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=8.1e-26 Score=212.19 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=104.9
Q ss_pred hhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc----------cCCCCC-------
Q 026996 66 KVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQVK------- 121 (229)
Q Consensus 66 ~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~----------~~~~~~------- 121 (229)
++++++|++.. .+++||++||+||||||||||+|+|+|++ .|++|++ +.+...
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll---~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL---IPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSS---CCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCC---CCCCCccccccchhhheeCCEehhhhhhhh
Confidence 67888887652 36899999999999999999999999999 8999984 222211
Q ss_pred ---CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhh
Q 026996 122 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 122 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~a 196 (229)
....+.+++...........++.+++.. .. ....+.++++.++. ..+.++.+|||||+||+++|+|
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~-----~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAra 242 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VD-----EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAA 242 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TC-----CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhh----hH-----HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHH
Confidence 0112332211111000000134343321 11 11234556666654 3567889999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|++|||||||++||+..+.++.+++..
T Consensus 243 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988864
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=8.6e-26 Score=211.60 Aligned_cols=153 Identities=19% Similarity=0.129 Sum_probs=112.1
Q ss_pred chhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------CC
Q 026996 62 KTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~~ 123 (229)
.+++++++++|++ . +.+++||+++|+||||||||||+++|+|++ .|++|++ +++.++ +.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI---DPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS---CCSEEEEEESSSBGGGBCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCcEEEECCEEcccCCHHHHHh
Confidence 5788889999953 2 238999999999999999999999999999 9999996 444333 22
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhh----cCCCCCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRN----QGSVYAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~----~~~~~~~~lSgG~k~R 190 (229)
.+++ +.|+..... .++.+|+.+ +.+. ...+.+.+.++ .+.. ........||||||||
T Consensus 418 ~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 418 HISA-VPQETVLFS---GTIKENLKW-----GRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp HEEE-ECSSCCCCS---EEHHHHHTT-----TCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHH
T ss_pred heEE-ECCCCcCcC---ccHHHHHhc-----cCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHH
Confidence 4666 455554332 367777643 2221 22233333332 1111 1245667999999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+....++.+.+..
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=4.3e-26 Score=214.08 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=110.6
Q ss_pred chhhhhhhhhcCCc--------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CCc
Q 026996 62 KTSLKVLCSQRREI--------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PPD 124 (229)
Q Consensus 62 ~~~~~~l~~~~~~~--------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~~ 124 (229)
.+++++++++|++. +.+++||++||+||||||||||+|+|+|++ .|++|++. ++.+. +..
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY---DVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS---CCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc---CCCCeEEEECCEEhhhCCHHHHHhc
Confidence 47788899999642 238899999999999999999999999999 99999964 44322 124
Q ss_pred EEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcCCC----CCCCCCccccchh
Q 026996 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGDPV 191 (229)
Q Consensus 125 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~k~Rl 191 (229)
.++ +.++..... .++.+|+.+. .+. .+.+.+.+.++..+ .+.+. ....||||||||+
T Consensus 431 i~~-v~Q~~~lf~---~tv~eni~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 431 IGI-VLQDTILFS---TTVKENLKYG-----NPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp EEE-ECTTCCCCS---SBHHHHHHSS-----STT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred eEE-EeCCCcccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 666 455554332 4788886532 211 11222333333221 11111 2358999999999
Q ss_pred hhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++|||++.+|+++|+||||++||+....++.+.+.+
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888764
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=1e-25 Score=210.67 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=111.9
Q ss_pred chhhhhhhhhcCCc---------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------CC
Q 026996 62 KTSLKVLCSQRREI---------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------PP 123 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~~ 123 (229)
.+++++++++|++. +.+++||++||+||||||||||+|+|+|++ .|++|++. ++.+. +.
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY---DVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS---CCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEEhhhCCHHHHhh
Confidence 47788899999642 238999999999999999999999999999 99999964 44322 12
Q ss_pred cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhh---------hcC----CCCCCCCCccccch
Q 026996 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDP 190 (229)
Q Consensus 124 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~lSgG~k~R 190 (229)
..++ +.++..... .++.+|+.+. .+. ...+.+.+.++..+ .+. ......||||||||
T Consensus 416 ~i~~-v~Q~~~l~~---~tv~eni~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 416 QIGL-VQQDNILFS---DTVKENILLG-----RPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp TEEE-ECSSCCCCS---SBHHHHHGGG-----CSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred heEE-EeCCCccCc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHH
Confidence 4676 455554332 3777876532 222 22334444443222 111 23345899999999
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++|||++.+|+++|+||||++||+.....+.+.+..
T Consensus 486 v~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 522 (578)
T 4a82_A 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522 (578)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888754
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-25 Score=210.09 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=102.4
Q ss_pred hhhhhcCCc-c------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCC------------CCC-----
Q 026996 67 VLCSQRREI-P------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------------VKP----- 122 (229)
Q Consensus 67 ~l~~~~~~~-~------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~------------~~~----- 122 (229)
+++++|+.. + .+++||++||+||||||||||+|+|+|++ +|++|++.... ...
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll---~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ---KPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS---CCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC---CCCCceEecccchhhhhheecChhhhhhhhH
Confidence 467777654 2 36799999999999999999999999999 99999862111 000
Q ss_pred ---CcEEEEeecCCcccc-CccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhh
Q 026996 123 ---PDVATVLPMDGFHLY-LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 123 ---~~~g~~i~~~~~~~~-~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~a 196 (229)
.....++........ ................ ........+.++++.++. ..+.++.+|||||+||+++|+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL---RMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMS 235 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH---HCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh---hhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHH
Confidence 000000000000000 0000000011111111 112234566777776665 3578899999999999999999
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++.+|++|||||||++||+..+.++.+++..
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~ 266 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHG
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988865
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=5.8e-25 Score=203.87 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=95.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCC--------CCcEEEEeecCCcc
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK--------PPDVATVLPMDGFH 135 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~------------~~~~~~--------~~~~g~~i~~~~~~ 135 (229)
+.+++||++||+||||||||||+|+|+|++ +|++|++ +.+... ....+.........
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~---~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI---IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVE 96 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS---CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTT
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhh
Confidence 458899999999999999999999999999 9999986 222221 01111111111111
Q ss_pred cc--CccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 136 LY--LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 136 ~~--~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
.. ....++.+.+. ... . ...+.++++.++. ..+.++.+|||||+||++||+|++.+|++|||||||+
T Consensus 97 ~~~~~~~~~v~~~l~----~~~--~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts 167 (538)
T 3ozx_A 97 YASKFLKGTVNEILT----KID--E---RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSS 167 (538)
T ss_dssp GGGTTCCSBHHHHHH----HHC--C---SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred hhhhhccCcHHHHhh----cch--h---HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 00 00012222111 111 1 1223455555543 4578899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh
Q 026996 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 ~LD~~~~~~~~~ll~~ 227 (229)
+||+..+.++.+++..
T Consensus 168 ~LD~~~~~~l~~~l~~ 183 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRE 183 (538)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988865
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.7e-24 Score=200.12 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=98.0
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
.+||++||+||||||||||+|+|+|++ +|++|+.+. ....+++ .++..... ..++.+++.. ...+ .
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~---~p~~G~~~~----~~~i~~~-~q~~~~~~--~~tv~e~~~~--~~~~--~ 441 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGAL---KPDEGQDIP----KLNVSMK-PQKIAPKF--PGTVRQLFFK--KIRG--Q 441 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSS---CCSBCCCCC----SCCEEEE-CSSCCCCC--CSBHHHHHHH--HCSS--T
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC---CCCCCcCcc----CCcEEEe-cccccccC--CccHHHHHHH--Hhhc--c
Confidence 345889999999999999999999999 999997422 2234553 33322111 1355554321 1111 1
Q ss_pred CccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 159 TFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
........++++.++. ..+.++.+|||||||||++|++|+.+|++||+||||++||+..+.++.+++.+
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1223445566665554 45788999999999999999999999999999999999999999999888764
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=3.7e-24 Score=208.61 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=111.9
Q ss_pred ccchhhhhhhhhcCC--c-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEee
Q 026996 60 QNKTSLKVLCSQRRE--I-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~--~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~ 130 (229)
...++++++++.|++ . +.|.+|+++||+||||||||||+|+|+|++ .|++|++..++. ..++++.+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll---~P~sG~I~~~~~--~~I~yv~Q 743 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL---LPTSGEVYTHEN--CRIAYIKQ 743 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS---CCSEEEEEECTT--CCEEEECH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEEcCc--cceEeecc
Confidence 346888999999964 2 238899999999999999999999999999 999999654431 12333221
Q ss_pred cCCcc-------------------------------------------------------------------cc------
Q 026996 131 MDGFH-------------------------------------------------------------------LY------ 137 (229)
Q Consensus 131 ~~~~~-------------------------------------------------------------------~~------ 137 (229)
....+ .+
T Consensus 744 ~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv 823 (986)
T 2iw3_A 744 HAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLL 823 (986)
T ss_dssp HHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred chhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhh
Confidence 10000 00
Q ss_pred ----------CccCChhhhH--------HHH-----------HHhcCCCCCccHHHHHHHHHhhhhc----CCCCCCCCC
Q 026996 138 ----------LSQLDAMEDP--------KEA-----------HARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFD 184 (229)
Q Consensus 138 ----------~~~l~~~~~~--------~~~-----------~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS 184 (229)
...++..++. ... ....+.........+.++++.++.. .+.++..||
T Consensus 824 ~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LS 903 (986)
T 2iw3_A 824 GENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLS 903 (986)
T ss_dssp EESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCC
T ss_pred hhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccC
Confidence 0001111110 000 0011222223345667788877753 356788999
Q ss_pred ccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 185 gG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||||||+++|++++.+|++|||||||++||+.....+.+.+.+
T Consensus 904 GGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~ 946 (986)
T 2iw3_A 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946 (986)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888764
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.88 E-value=3.5e-24 Score=216.08 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=117.6
Q ss_pred chhhhhhhhhcCCc---c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------C
Q 026996 62 KTSLKVLCSQRREI---P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~ 122 (229)
.+++++|+.+|.+. . .|++||++||+|+||||||||+++|.|++ .|++|++ ++|.++ +
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~---~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY---DTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS---CCSSSEEEETTEETTTBCHHHHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc---cCCCCEEEECCEEhhhCCHHHHH
Confidence 57889999999543 2 28999999999999999999999999999 8999996 444333 3
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCC-CCCccHHHHHHHHHhhh---------hcCCCCC----CCCCcccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 188 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG~k 188 (229)
..++. ++|+.+.+. -|+.+|+.+ |. +.+...+++.++++..+ .+.+..+ ..||||||
T Consensus 1153 ~~i~~-V~Qdp~LF~---gTIreNI~~-----gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A 1153 SQIAI-VSQEPTLFD---CSIAENIIY-----GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp TTEEE-ECSSCCCCS---EEHHHHHSS-----SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred hheEE-ECCCCEeeC---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence 45666 677776544 367777643 32 23344555555555322 2334444 46999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++|||++.+|+||||||||+.||.+..+.+.+.++.
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888887764
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=9.4e-24 Score=212.51 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=112.2
Q ss_pred chhhhhhhhhcCCc----------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC--------C
Q 026996 62 KTSLKVLCSQRREI----------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~----------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~--------~ 122 (229)
.+++++|+++|++. +.|++||++||+||||||||||+++|+|++ .|++|++ +++.++ +
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~---~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY---DPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS---CCSEEEEESSSSCTTSSCHHHHT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEcccCCHHHHH
Confidence 47788888888642 238899999999999999999999999999 9999996 444433 2
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCC-CCccHHHHHHHHHhhh---------hcCCC----CCCCCCcccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVG 188 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~k 188 (229)
...++ +.++..... .++.+|+.+ +.+ .....+.+.+.++... .+.+. ....||||||
T Consensus 1107 ~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1107 AQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp TSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred hceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 34666 556654332 477777543 221 1123333433333221 11222 3458999999
Q ss_pred chhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
||+++|||++.+|+|||+||||++||....+.+.+.+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=6.3e-23 Score=199.96 Aligned_cols=149 Identities=13% Similarity=0.015 Sum_probs=105.2
Q ss_pred chhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCc
Q 026996 62 KTSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 134 (229)
.+...+++++|++.. .|++|++++|+||||||||||+|+|+|-. . .|.-.. . ....++ +.++..
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~-~--~~~~~~-v~q~~~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQ-E--ECRTVY-VEHDID 505 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCT-T--TSCEEE-TTCCCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCccc-c--ceeEEE-Eccccc
Confidence 344457899998763 38899999999999999999999999621 1 121000 0 112333 222211
Q ss_pred cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 135 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
. ....+++.+++.. ...+ . ...+.++++.++.. .+.++.+||||||||+++|++++.+|++|||||||+
T Consensus 506 ~-~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 506 G-THSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp C-CCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred c-cccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 1 1123566666543 1111 1 45677788877762 467889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh
Q 026996 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 ~LD~~~~~~~~~ll~~ 227 (229)
+||+..+..+.+++..
T Consensus 578 ~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT 593 (986)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998753
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=4.6e-23 Score=207.55 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=112.0
Q ss_pred chhhhhhhhhcCCc---c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--------C
Q 026996 62 KTSLKVLCSQRREI---P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--------P 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--------~ 122 (229)
.+++++++++|++. . .+++||++||+||||||||||+++|+|++ .|++|++. ++.++ +
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHHhCCHHHHH
Confidence 47888899999642 1 28899999999999999999999999999 89999964 44322 1
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHH---------HhhhhcC----CCCCCCCCccccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQG----SVYAPSFDHGVGD 189 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l---------~~l~~~~----~~~~~~lSgG~k~ 189 (229)
..+++ +.|+..... .++.+|+.+... ....+.+.+.+ +.+..+. ......|||||||
T Consensus 464 ~~i~~-v~Q~~~l~~---~ti~eNi~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 464 EIIGV-VSQEPVLFA---TTIAENIRYGRE------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHEEE-ECSSCCCCS---SCHHHHHHHHCS------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred hheEE-EcCCCccCC---ccHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 23666 556654333 378888775421 11223333322 2222222 2345689999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|||++.+|+|+||||||+.||+.....+.+.++.
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 571 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877753
No 57
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=1.3e-23 Score=182.75 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=93.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|+++||+||||||||||+++|+|++ .|+.| ...++. +.+++++... ++.+++... ...+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll---~~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL---ARWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH---HTSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc---cccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCC
Confidence 6889999999999999999999999999 77766 344565 5667664332 444443221 113445
Q ss_pred CCccHHHHHHHHHhhhhcC-CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 158 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
..++...+.+.++.++... +.+++.||+||+||+++|++++.+|+|+|+|||++++|
T Consensus 151 ~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 151 ESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp GGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 5666777888888887433 36788999999999999999999999999999999986
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=1.2e-22 Score=192.97 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=84.0
Q ss_pred cCCc-ccccCCeEEEEECCCCCcHHHHH---------------------HHHHHhhcccCCCCcccc--------CCCCC
Q 026996 72 RREI-PVVEARHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASSF--------DSQVK 121 (229)
Q Consensus 72 ~~~~-~~i~~GeiigLiG~NGsGKSTLl---------------------r~L~Gl~~~~~p~~G~~~--------~~~~~ 121 (229)
+.++ +.|++||++||+||||||||||+ +++.|+. .|+.|.+. .+...
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~---~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQME---KPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC-
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccc---cCCccceeccccceEecCchh
Confidence 4455 55999999999999999999998 8888888 78865421 11111
Q ss_pred ----CCcEEEEeecCCcc----------------ccCccCChhhhHHHHHHhc--CCCCCc------cHHHHHHHHHhhh
Q 026996 122 ----PPDVATVLPMDGFH----------------LYLSQLDAMEDPKEAHARR--GAPWTF------NPLLLLNCLKNLR 173 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~----------------~~~~~l~~~~~~~~~~~~~--g~~~~~------~~~~~~~~l~~l~ 173 (229)
....|++.+...+. .....+++.+++.+..... ...... ........++.++
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 01111111000000 0001134555544321110 000000 0011123355555
Q ss_pred hc---CCCCCCCCCccccchhhhhhhhhcCCc--EEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 174 NQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 174 ~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~--illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.. .+.++.+||||||||+++|+||+.+|+ +||+||||++||+..+.++.+++..
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~ 249 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 249 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 43 467889999999999999999999988 9999999999999999999998865
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=8.7e-23 Score=205.99 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=114.4
Q ss_pred chhhhhhhhhcCCc---c-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCC--------
Q 026996 62 KTSLKVLCSQRREI---P-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKP-------- 122 (229)
Q Consensus 62 ~~~~~~l~~~~~~~---~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~-------- 122 (229)
.+++++++++|++. + .|++|+.++|+||+|||||||+++|.|++ .|++|++. +|.++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~---~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY---DVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS---CCSEEEEEETTEETTTSCHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc---ccccCcccCCCccchhccHHHHh
Confidence 47788899998642 2 28899999999999999999999999999 99999964 443331
Q ss_pred CcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHH---------hhhhcCCCC----CCCCCccccc
Q 026996 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGVGD 189 (229)
Q Consensus 123 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lSgG~k~ 189 (229)
..+++ +.|+.+.+. -|+.+|+.+. .+. .+.+++.++++ .|..+.+.. ...|||||||
T Consensus 492 ~~i~~-v~Q~~~Lf~---~TI~eNI~~g-----~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 492 KNVAV-VSQEPALFN---CTIEENISLG-----KEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp HHEEE-ECSSCCCCS---EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred hcccc-cCCcceeeC---CchhHHHhhh-----ccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 24666 667776544 3788887643 222 23444444443 333333433 3479999999
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++|||+..+|+|+||||||++||......+.+.++.
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887777654
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.5e-25 Score=200.50 Aligned_cols=158 Identities=16% Similarity=0.032 Sum_probs=105.7
Q ss_pred cchhhhhhhhhcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-c-ccCCCCCCCcEEEEeecCCc-cc
Q 026996 61 NKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVATVLPMDGF-HL 136 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G-~-~~~~~~~~~~~g~~i~~~~~-~~ 136 (229)
..+++++++++|++. +.+++|++++|+||||||||||+|+|+|++ .|++| + ++.+.......+++ .++.. ..
T Consensus 117 ~mi~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~---~p~~G~~pI~vdg~~~~~i~~v-pq~~~l~~ 192 (460)
T 2npi_A 117 TMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA---LKFNAYQPLYINLDPQQPIFTV-PGCISATP 192 (460)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT---HHHHCCCCEEEECCTTSCSSSC-SSCCEEEE
T ss_pred chhhhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc---cccCCceeEEEcCCccCCeeee-ccchhhcc
Confidence 357899999999876 669999999999999999999999999999 89999 8 65443333334442 22221 01
Q ss_pred cCccCChhhhHHHHHHh-cCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhh--hhcCCcE----EEEcC-
Q 026996 137 YLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHKV----VIVDG- 208 (229)
Q Consensus 137 ~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~a--l~~~~~i----lllDe- 208 (229)
....+++.+++ +.... .+. .....+..+++.++.........|||||+||+++|++ ++.+|++ +|+||
T Consensus 193 ~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 193 ISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp CCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred cccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 11123444443 21110 010 0111112233333332222267899999999999999 9999999 99999
Q ss_pred CcCCCChhhHHHHHHHHHh
Q 026996 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~~~LD~~~~~~~~~ll~~ 227 (229)
|+++||+. ...+.+++.+
T Consensus 269 Pts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHH
Confidence 99999998 6677776653
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=4.4e-22 Score=163.69 Aligned_cols=116 Identities=18% Similarity=0.103 Sum_probs=73.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC----C--CCCCcEEEEeecCCccccCccCChhhhH-HH-
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS----Q--VKPPDVATVLPMDGFHLYLSQLDAMEDP-KE- 149 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~----~--~~~~~~g~~i~~~~~~~~~~~l~~~~~~-~~- 149 (229)
|++|++++|+||||||||||+|+|+|+ . |++|++... . .....+|+ +.++. .+++ .+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~~----------~enl~~~~ 83 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGTL----------NEKIDPYL 83 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC----------------CTTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCCH----------HHHHHHHH
Confidence 589999999999999999999999998 3 889986320 0 01112222 11111 1111 11
Q ss_pred ---HHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 150 ---AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 150 ---~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
....... .....+.++++. + .||+||+++|++++.+|+++|+||||++ .+.++.+++.
T Consensus 84 ~~~~~~~~~~---~~~~~~~~~l~~-g-----------lGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 84 RPLHDALRDM---VEPEVIPKLMEA-G-----------IVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp HHHHHHHTTT---SCTTHHHHHHHT-T-----------SEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred HHHHHHHHHh---ccHHHHHHHHHh-C-----------CchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 0011111 112233344433 1 1999999999999999999999999999 6777777765
Q ss_pred h
Q 026996 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 145 ~ 145 (208)
T 3b85_A 145 R 145 (208)
T ss_dssp T
T ss_pred H
Confidence 3
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.81 E-value=6.6e-20 Score=174.05 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=52.5
Q ss_pred HHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+.++.++.. .+.++.+|||||||||++|+||+.+| ++||+||||++||+..+.++.+++.+
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~ 591 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 34455555442 35678899999999999999999876 59999999999999999999998865
No 63
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.76 E-value=3.6e-19 Score=141.43 Aligned_cols=37 Identities=5% Similarity=-0.200 Sum_probs=34.5
Q ss_pred CCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh
Q 026996 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 180 ~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~ 216 (229)
....|+|++||+++|++++.+|+++++|||+++||+.
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 3456999999999999999999999999999999998
No 64
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.76 E-value=1.9e-20 Score=168.28 Aligned_cols=128 Identities=9% Similarity=-0.028 Sum_probs=88.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 162 (229)
++||+|+||||||||+|+|+|++ .|++|++..++......+.+++. ..+ ..++..+++.+. .. .
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~---~p~~GsI~~~g~~~t~~~~v~q~-~~~---~~ltv~D~~g~~-----~~-~--- 134 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG---NEEEGAAKTGVVEVTMERHPYKH-PNI---PNVVFWDLPGIG-----ST-N--- 134 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC---TTSTTSCCCCC----CCCEEEEC-SSC---TTEEEEECCCGG-----GS-S---
T ss_pred EEEEECCCCCcHHHHHHHHhCCC---CccCceEEECCeecceeEEeccc-ccc---CCeeehHhhccc-----ch-H---
Confidence 99999999999999999999999 89999965443221122443333 221 113444443211 11 1
Q ss_pred HHHHHHHHhhhhcC-CCCCCCCCcc--ccchhhhhhhhhc----------CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 163 LLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 163 ~~~~~~l~~l~~~~-~~~~~~lSgG--~k~Rl~~a~al~~----------~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+.++++.++... +..+ .+|+| |+||+.+|++++. +|+++++|||+++||+..+.++.+++..
T Consensus 135 ~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 22445556554432 2223 39999 9999999999999 9999999999999999998888877654
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.75 E-value=2e-19 Score=144.33 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=46.6
Q ss_pred CCCCCCCCCccccchhhhhhh-----hhcCCcEEEEcC--CcCCCChhhHHHHHHHHHh
Q 026996 176 GSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 176 ~~~~~~~lSgG~k~Rl~~a~a-----l~~~~~illlDe--~~~~LD~~~~~~~~~ll~~ 227 (229)
.+.++..||+||+||+++|++ ++.+|+++|+|| |++++|+..++.+.++++.
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 355677899999999999996 899999999999 9999999999999988753
No 66
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=2.5e-18 Score=143.87 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=87.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+.+++|+++||+||||||||||+++|+|+++ .+..+ ......++ +.++.++. .++..++.........
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-~~~~~i~~-v~~d~~~~---~l~~~~~~~~~~~~~~ 87 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-QRQRKVVI-LSQDRFYK---VLTAEQKAKALKGQYN 87 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-GGGCSEEE-EEGGGGBC---CCCHHHHHHHHTTCCC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-ccCCceEE-EeCCcCcc---ccCHhHhhhhhccCCC
Confidence 3488999999999999999999999999872 21111 11234555 45555432 2566555443322222
Q ss_pred C--CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 156 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 156 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
+ +..++...+.+.++.+......+++.||+||+||+.+ ++++.+|+++|+|||+...+.
T Consensus 88 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 88 FDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred CCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 2 2234556667777777666778889999999999988 577789999999999988875
No 67
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=4.5e-19 Score=151.10 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=72.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCC-----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~-~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.++|+||||||||||+|+|+|+. .|++|++.. +... ....+.+++..+.. ..+++.+++.+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~---~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~---~~ltv~d~~~~g~~~~-- 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ---VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVK---MKLTVIDTPGFGDQIN-- 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---C------------CCCCCSCCEEEESCC----C---CEEEEECCCC--CCSB--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCCccccCCcccCcceeeeeeEEEeecCCCc---CCceEEechhhhhhcc--
Confidence 58999999999999999999999 899998533 3222 22345433322221 1256666654432111
Q ss_pred CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
.......+...++ ....+....+||+||+||+++|++++. ++++|||+.++|+...+.+..
T Consensus 76 -~~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~ 136 (270)
T 3sop_A 76 -NENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH 136 (270)
T ss_dssp -CTTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred -cHHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence 1122233333333 112234456899999999999998764 999999999999876444333
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1e-17 Score=161.74 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=54.9
Q ss_pred HHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcC---CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 164 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 164 ~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~---~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
...++++.++.. .+.++.+|||||+||+++|++|+.+ |+++||||||++||...+.++.+++..
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 778 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK 778 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 445666766653 3677889999999999999999996 799999999999999999999998865
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=5.9e-17 Score=157.62 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 163 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 163 ~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....+.++.++.. ...++.+|||||+||+++|++|+.+| +++||||||++||+...+++.++|+.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~ 853 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3455667766653 45788999999999999999998765 79999999999999999999998875
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.71 E-value=1.3e-18 Score=155.55 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=43.0
Q ss_pred CCccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 183 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 183 lSgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+||||+||+++|++++.+| ++||||||+++||+.....+.+++..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~ 342 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR 342 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999998865
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.69 E-value=5.5e-17 Score=157.54 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=53.8
Q ss_pred HHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..++++.++.. .+.++.+|||||+||+++|++|+.+| +++||||||++||+..+.++.+++..
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 893 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 45566666653 36788899999999999999999765 99999999999999999999998864
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.68 E-value=1.6e-16 Score=154.81 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=53.6
Q ss_pred HHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC---cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~---~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..++++.++.. .+.++.+|||||+||+++|++|+.+| +++||||||++||...+.++.+++..
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 911 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 34566666553 46788899999999999999999764 99999999999999999999998864
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.67 E-value=1.9e-18 Score=149.50 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=80.8
Q ss_pred chhhhhhhhhcCCc------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCcc
Q 026996 62 KTSLKVLCSQRREI------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 135 (229)
Q Consensus 62 ~~~~~~l~~~~~~~------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~ 135 (229)
.+++++|++.|+.. +.|++|++++|+||||||||||+++|+|++ +|+++. ++.++...
T Consensus 101 ~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~~----------~v~q~~~l 164 (305)
T 2v9p_A 101 FFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVLS----------FANHKSHF 164 (305)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEEC----------GGGTTSGG
T ss_pred eEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEEE----------EecCcccc
Confidence 46778888887511 238999999999999999999999999997 354211 01122211
Q ss_pred ccCccCChhh-hHHHHHHhcCCCCCccHHHHHHHHHh-hhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCC
Q 026996 136 LYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (229)
Q Consensus 136 ~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~l~~-l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~L 213 (229)
+. .+..+ ++.+ ..... ..+.+.++. +....+ ...|||||||| ||+++.+|+||| |++|
T Consensus 165 f~---~ti~~~ni~~-------~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 165 WL---ASLADTRAAL-------VDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GG---GGGTTCSCEE-------EEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred cc---ccHHHHhhcc-------Ccccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 11 12222 2211 00011 133444444 333333 67999999999 999999999999 9999
Q ss_pred ChhhHHHHH
Q 026996 214 DGGVWKDVS 222 (229)
Q Consensus 214 D~~~~~~~~ 222 (229)
|+.....+.
T Consensus 225 D~~~~~~i~ 233 (305)
T 2v9p_A 225 DVQAEDRYL 233 (305)
T ss_dssp CSTTCGGGG
T ss_pred CHHHHHHHH
Confidence 997766553
No 74
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.65 E-value=1.3e-17 Score=135.72 Aligned_cols=129 Identities=23% Similarity=0.259 Sum_probs=84.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
.++|+++||+|+||||||||+++|+|++ .+..+. +.++.++.....++..++... ..+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~----------------~~~i~~-v~~d~~~~~~~~~~~~~~~~~---~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL----------------GERVAL-LPMDHYYKDLGHLPLEERLRV---NYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH----------------GGGEEE-EEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh----------------CCCeEE-EecCccccCcccccHHHhcCC---CCCCh
Confidence 4689999999999999999999999998 223444 566666543333444433221 12223
Q ss_pred CCccHHHHHHHHHhhhhc--CCCCCCCCCcccc----chhhhhhhhhcCCcEEEEcCCcCC-------CChhhHHHHHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM 224 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k----~Rl~~a~al~~~~~illlDe~~~~-------LD~~~~~~~~~l 224 (229)
...+...+.+.++.++.. ...+...+|+|++ ||++++++++.++.++++|||+.. +|.+....+.++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 345556666777766543 2346678899974 577777777777777777777777 777666666665
Q ss_pred HH
Q 026996 225 FD 226 (229)
Q Consensus 225 l~ 226 (229)
+.
T Consensus 143 l~ 144 (211)
T 3asz_A 143 LK 144 (211)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 75
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.65 E-value=4.5e-16 Score=137.81 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=46.3
Q ss_pred CCCCCCCccccchhhhhhhhh------cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 178 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 178 ~~~~~lSgG~k~Rl~~a~al~------~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.++.+|||||+||+++|++++ .+|+++|+||||++||+.....+.+++..
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~ 330 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKE 330 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHG
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 467789999999999999998 69999999999999999999999998865
No 76
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.62 E-value=1.5e-16 Score=138.44 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=45.6
Q ss_pred CCCCCCCCccccchhhhhhhhh----cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 177 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~----~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.++..||+||+||+++|++++ .+|+++|+|||+++||+..+..+.+++..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 268 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE 268 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHH
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999997 58899999999999999999999988764
No 77
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.60 E-value=2.8e-16 Score=135.08 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=86.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHH------H
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H 151 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~------~ 151 (229)
-.++.++||+|++|||||||+++|.+++. +. |. ....+.++.+|+|+... +..+++.+. .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 45789999999999999999999999982 21 10 01234544889886542 333333322 1
Q ss_pred HhcCCCCCccHHHHHHHHHhhhhcCC----------CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh
Q 026996 152 ARRGAPWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 152 ~~~g~~~~~~~~~~~~~l~~l~~~~~----------~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~ 216 (229)
...+.+..++...+.+.++.+..+.+ .+-..+||||+||+++|++.+.+|+|+|+||+++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 12345778888888888888876521 223467999999999874333399999999999999984
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.57 E-value=2.5e-18 Score=141.77 Aligned_cols=138 Identities=8% Similarity=-0.027 Sum_probs=77.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCC---CCcEEEEeecCCccccCccCChhhhHHHHHH
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 152 (229)
+.+++|++++|+||||||||||+++|+|++ | |++..+... .+..+. ...-++... +..........
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~g~~~~~~~~~~~~-~~~i~~~~~----~~~~~~~~~~~ 86 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYFSVSCTTRKKREKE-KEGVDYYFI----DKTIFEDKLKN 86 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEECCCEECSCCCSSC-CBTTTBEEC----CHHHHHHHHHT
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEEeecccCCCCCccc-ccCCeEEEC----CHHHHHHhhhc
Confidence 448999999999999999999999999986 4 774333211 000000 000011110 00000000000
Q ss_pred --hc------CCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhh-----hhhhhcCCcEEEEcCCcCCCChhhHH
Q 026996 153 --RR------GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGNYLFLDGGVWK 219 (229)
Q Consensus 153 --~~------g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~-----a~al~~~~~illlDe~~~~LD~~~~~ 219 (229)
.. +.........+.++++..... .....+||||+||+++ +++++..|+++++||+++.+|.....
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~ 164 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQE 164 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHH
Confidence 00 000001123344444432211 1114679999999999 88998999999999999999987777
Q ss_pred HHHHHHH
Q 026996 220 DVSSMFD 226 (229)
Q Consensus 220 ~~~~ll~ 226 (229)
.+.+.+.
T Consensus 165 ~i~~~l~ 171 (218)
T 1z6g_A 165 QIQKRME 171 (218)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 79
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.55 E-value=3.9e-16 Score=134.93 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=79.9
Q ss_pred hhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCCC-------------
Q 026996 65 LKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPP------------- 123 (229)
Q Consensus 65 ~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~~------------- 123 (229)
.+.+.+.|+.. +.+++|++++|+||||||||||+++|+|++ .|+.|++. .+.....
T Consensus 77 ~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l---~~~~g~V~l~g~d~~r~~a~~ql~~~~~~ 153 (302)
T 3b9q_A 77 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL---KNEGTKVLMAAGDTFRAAASDQLEIWAER 153 (302)
T ss_dssp HHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH---HHTTCCEEEECCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH---HHcCCeEEEEeecccchhHHHHHHHHHHh
Confidence 34466666542 237899999999999999999999999999 78888742 2222110
Q ss_pred -cEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcC
Q 026996 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 124 -~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~ 200 (229)
..+++. ++... ..+..++.+++.+... .+. +. .+++.++.. .+.++.+|| +||+++|++++.+
T Consensus 154 ~~i~~v~-q~~~~-~~~~~~v~e~l~~~~~-~~~----d~----~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~ 219 (302)
T 3b9q_A 154 TGCEIVV-AEGDK-AKAATVLSKAVKRGKE-EGY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGA 219 (302)
T ss_dssp HTCEEEC-CC--C-CCHHHHHHHHHHHHHH-TTC----SE----EEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTC
T ss_pred cCceEEE-ecCCc-cCHHHHHHHHHHHHHH-cCC----cc----hHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccC
Confidence 123322 11110 0111233444433211 110 00 001111110 112233567 8999999999999
Q ss_pred Cc--EEEEcCCcCCCChhhH
Q 026996 201 HK--VVIVDGNYLFLDGGVW 218 (229)
Q Consensus 201 ~~--illlDe~~~~LD~~~~ 218 (229)
|+ ++++| |++++|...+
T Consensus 220 P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 220 PNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp CSEEEEEEE-GGGGGGGHHH
T ss_pred CCeeEEEEe-CCCCcCHHHH
Confidence 99 99999 9999998654
No 80
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.54 E-value=5.9e-16 Score=126.28 Aligned_cols=124 Identities=32% Similarity=0.530 Sum_probs=78.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
.++|++++|+||||||||||+++|+|++ .|+ | ...|. +.+++++.... ...+... ....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~---~~~-g---------~~~g~-v~~d~~~~~~~---~~~~~~~-~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL---SAQ-G---------LPAEV-VPMDGFHLDNR---LLEPRGL-LPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH---HHT-T---------CCEEE-EESGGGBCCHH---HHGGGTC-GGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH---hhc-C---------CceEE-EecCCCcCCHH---HHHHhcc-cccCCCC
Confidence 5789999999999999999999999999 333 2 23555 66777654321 1111100 0123444
Q ss_pred CCccHHHHHHHHHhhhhcCCC------CCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQGSV------YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~------~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
..++...+.+.+..+...... .....|+|++||++.+ ++++++|++++.+|++.|..+.+.+
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~------~~~~i~eg~~~l~de~~~~~l~~~~ 148 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE------CRVAIIEGNYLLFDAPGWRDLTAIW 148 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTT------CCEEEEEESSTTBCSTTGGGGGGTC
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCC------CcEEEECCceeccCCchhHHHHHhc
Confidence 556666666666666544221 2234678898888322 3788888888888876655544433
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.52 E-value=8.3e-15 Score=128.07 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=61.3
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
.+++|++++|+||||||||||+++|+|++ .|++|.+..++.. .+. +....+ ..++
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~-----------e~~-----~~~~~~------~i~~ 221 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTE-----------EIV-----FKHHKN------YTQL 221 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSC-----------CCC-----CSSCSS------EEEE
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCee-----------ccc-----cccchh------EEEE
Confidence 37899999999999999999999999999 7888754222110 000 000000 0000
Q ss_pred CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
.. .+||+||+++++++..+|+++|+|||++
T Consensus 222 ~~-------------------------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 222 FF-------------------------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp EC-------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred Ee-------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 00 0899999999999999999999999998
No 82
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.51 E-value=5e-15 Score=128.12 Aligned_cols=137 Identities=20% Similarity=0.296 Sum_probs=87.9
Q ss_pred ccchhhhhhhhhcCCc-----ccc-------------------cCCeEEEEECCCCCcHHHHHHHHHHhhcccC--CCCc
Q 026996 60 QNKTSLKVLCSQRREI-----PVV-------------------EARHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKA 113 (229)
Q Consensus 60 ~~~~~~~~l~~~~~~~-----~~i-------------------~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~--p~~G 113 (229)
...+++++|++.|+.. +.+ .+|+++||+|+||||||||+++|+|++ . |++|
T Consensus 35 ~~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l---~~~~~~G 111 (308)
T 1sq5_A 35 NEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL---SRWPEHR 111 (308)
T ss_dssp CTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH---TTSTTCC
T ss_pred ccccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---hhCCCCC
Confidence 4557788888888533 114 889999999999999999999999998 6 7777
Q ss_pred cccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCC-CCCCCCCccccchhh
Q 026996 114 SSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVE 192 (229)
Q Consensus 114 ~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-~~~~~lSgG~k~Rl~ 192 (229)
+ ..++..++++... .......+. ...+.+...+.......+..+..... ...+.|+....+|+.
T Consensus 112 ~-----------i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~ 176 (308)
T 1sq5_A 112 R-----------VELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP 176 (308)
T ss_dssp C-----------EEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECT
T ss_pred e-----------EEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCccc
Confidence 3 2234556654211 000100000 11223334455555555555544433 456677777777776
Q ss_pred hhhhhhcCCcEEEEcCCcCCCC
Q 026996 193 DDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 193 ~a~al~~~~~illlDe~~~~LD 214 (229)
.+.+.+..++++|+|+|+++.+
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCC
T ss_pred ccceecCCCCEEEECchhhCCC
Confidence 5555557789999999999987
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=1.2e-14 Score=134.23 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=82.0
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
-+.+|++++|+|+||||||||+++++|.. .|+ |+ ...++..++ +... +.......++
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~---~~~-G~---------~vi~~~~ee---------~~~~-l~~~~~~~g~ 333 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA---CAN-KE---------RAILFAYEE---------SRAQ-LLRNAYSWGM 333 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH---HTT-TC---------CEEEEESSS---------CHHH-HHHHHHTTSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH---HhC-CC---------CEEEEEEeC---------CHHH-HHHHHHHcCC
Confidence 48999999999999999999999999998 453 42 111211111 1111 1111122222
Q ss_pred CCCccHHHHHHHHH-hhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChh-----hHHHHHHHHHh
Q 026996 157 PWTFNPLLLLNCLK-NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSSMFDE 227 (229)
Q Consensus 157 ~~~~~~~~~~~~l~-~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~-----~~~~~~~ll~~ 227 (229)
+... +.. .+....+.++..||+||+||+.+|+++..+|+++|+| |+++||.. .+..+.+++..
T Consensus 334 ----~~~~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~ 402 (525)
T 1tf7_A 334 ----DFEE---MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGY 402 (525)
T ss_dssp ----CHHH---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred ----CHHH---HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHH
Confidence 2222 111 1222345667789999999999999999999999999 99999998 88888777653
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.50 E-value=2e-15 Score=133.38 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=73.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCCCC--------------cEEEEeecCCccccCccCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPP--------------DVATVLPMDGFHLYLSQLD 142 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~~~--------------~~g~~i~~~~~~~~~~~l~ 142 (229)
+++|++++|+||||||||||+++|+|++ .|+.|++. .+..... .++++. ++... ..+..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l---~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~-q~~~~-~~p~~t 228 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL---KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV-AEGDK-AKAATV 228 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH---HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC-CSSSS-CCHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc---cccCCEEEEecccccccchhHHHHHHHHhcCeEEEE-ecccc-cChhhh
Confidence 6799999999999999999999999999 78888742 2222110 123322 11110 001123
Q ss_pred hhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc--CCCCCCCCCccccchhhhhhhhhcCCc--EEEEcCCcCCCChhhH
Q 026996 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVW 218 (229)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~k~Rl~~a~al~~~~~--illlDe~~~~LD~~~~ 218 (229)
+.+++.+... .+. +. .+++.++.. .+..+.+|| +||+++|++++.+|+ +|++| |++++|...+
T Consensus 229 v~e~l~~~~~-~~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~ 295 (359)
T 2og2_A 229 LSKAVKRGKE-EGY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 295 (359)
T ss_dssp HHHHHHHHHH-TTC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred HHHHHHHHHh-CCC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH
Confidence 3344333221 110 00 001111110 112233567 899999999999999 99999 9999998654
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.48 E-value=8.4e-15 Score=118.38 Aligned_cols=121 Identities=14% Similarity=0.044 Sum_probs=72.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCC-------CCCcEEEEeecCCccccCccCChhhhHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~-------~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~ 153 (229)
|++++|+||||||||||+++|+|++ + ++| +..++. .....|++++.. . -. ..++. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~---~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~-~-g~------~~~l~----~ 63 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL---K-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL-S-GT------RGPLS----R 63 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH---H-HTT-CCCEEEECCEEETTSSEEEEEEEET-T-SC------EEEEE----E
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc---c-cCC-EEEcCEecchhHhhhceEEEEEEec-c-cc------eehhh----c
Confidence 7899999999999999999999999 6 777 432210 011223322111 0 00 00000 0
Q ss_pred cCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhh-hhh---hhhcCCcEEEEcC--CcCCCChhhHHHHHHHHHh
Q 026996 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 154 ~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~-~a~---al~~~~~illlDe--~~~~LD~~~~~~~~~ll~~ 227 (229)
........ .-......+...+|+||++++. +++ |+..+|+++|+|| |+..+|+.+++.+.++++.
T Consensus 64 ~~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 64 VGLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp CCCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred ccccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 00000000 0000112333457899998873 344 4678999999999 8888999999999998864
No 86
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.48 E-value=1.3e-13 Score=120.60 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCCCCCCccccc------hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 178 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 178 ~~~~~lSgG~k~------Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.++..|||||+| |+++|++++.+|+++|+|||+++||+..+..+.+++..
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 467789999999 67778888889999999999999999999999888764
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.46 E-value=1.6e-16 Score=129.51 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=25.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..|++|++++|+||||||||||+|+|+|++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999999999998
No 88
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.44 E-value=9.2e-15 Score=127.27 Aligned_cols=117 Identities=28% Similarity=0.488 Sum_probs=86.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 162 (229)
++||+||||||||||+++|++++.. .|+.| ..+ ++.+|+++.....+ +. .......|.+..++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~----------~v~-~i~~D~f~~~~~~l---~~-~~~~~~~g~P~~~D~ 157 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR-WPDHP----------NVE-VITTDGFLYSNAKL---EK-QGLMKRKGFPESYDM 157 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT-STTCC----------CEE-EEEGGGGBCCHHHH---HH-TTCGGGTTSGGGBCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc-cCCCC----------eEE-EEeecccccchhhh---hh-HHHHhhccCcccccH
Confidence 9999999999999999999999821 13333 233 46788876432111 10 001123567778889
Q ss_pred HHHHHHHHhhhhcC-CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 163 LLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 163 ~~~~~~l~~l~~~~-~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
..+.+.+..+..+. ...++.||.+..+|+......+..++++|+|+++++.++
T Consensus 158 ~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 158 PSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 99999999988776 677889999999988665666689999999999999987
No 89
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.44 E-value=3.1e-15 Score=135.38 Aligned_cols=140 Identities=8% Similarity=-0.053 Sum_probs=84.1
Q ss_pred chhhhhhhhhcC-Cc------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCC---CC---------
Q 026996 62 KTSLKVLCSQRR-EI------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQ---VK--------- 121 (229)
Q Consensus 62 ~~~~~~l~~~~~-~~------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~---~~--------- 121 (229)
.++++++++.|+ +. +.+.+|++++|+||||||||||+++|+|+. .|+.|.+. .+. .+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~---~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred ceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc---CCCeEEEEEeceecHHHHHHHHhhcc
Confidence 455666667775 33 348999999999999999999999999999 78888642 222 01
Q ss_pred ----CCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhh
Q 026996 122 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 122 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al 197 (229)
....++ +.+++.... ..+++.++.......... ... .+.... ..+..||+|| ||+++|
T Consensus 208 ~~~l~r~i~~-v~q~~~~~~-~~~~v~~~~~~~ae~~~~-~~~----------~v~~~l-d~l~~lS~g~-qrvslA--- 269 (438)
T 2dpy_A 208 PDGRARSVVI-AAPADVSPL-LRMQGAAYATRIAEDFRD-RGQ----------HVLLIM-DSLTRYAMAQ-REIALA--- 269 (438)
T ss_dssp HHHHHTEEEE-EECTTSCHH-HHHHHHHHHHHHHHHHHT-TTC----------EEEEEE-ECHHHHHHHH-HHHHHH---
T ss_pred ccccCceEEE-EECCCCCHH-HHHHHHHHHHHHHHHHHh-CCC----------CHHHHH-HhHHHHHHHH-HHHHHH---
Confidence 011233 222211100 012233332222211110 000 000000 1245689999 999998
Q ss_pred hcCCcEEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 198 ~~~~~illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
+.+|++ +.+||+.....+.+++...
T Consensus 270 l~~p~~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 270 IGEPPA------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence 578887 9999999999999988653
No 90
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.41 E-value=1.1e-14 Score=125.62 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred hhhhhcCCcccccC-CeEEEEECCCCCcHHHHHHHHHHh-hcccCCCCccccCCCCC-----CCcEEEEeecCCccccCc
Q 026996 67 VLCSQRREIPVVEA-RHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLS 139 (229)
Q Consensus 67 ~l~~~~~~~~~i~~-GeiigLiG~NGsGKSTLlr~L~Gl-~~~~~p~~G~~~~~~~~-----~~~~g~~i~~~~~~~~~~ 139 (229)
+|++.|+++.+++. --.++|+|+||+|||||+++|.|. + .|++|-.+.+... ....+.+++.++...
T Consensus 3 ~l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~---~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~--- 76 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDL---YPERVISGAAEKIERTVQIEASTVEIEERGVKL--- 76 (301)
T ss_dssp ---------------CEEEEEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCE---
T ss_pred CCcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCc---cCCCCcccCCcccCCcceEeeEEEEecCCCccc---
Confidence 56777776654432 234599999999999999999997 6 7888721111111 111233333222211
Q ss_pred cCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCC-CChhhH
Q 026996 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF-LDGGVW 218 (229)
Q Consensus 140 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~-LD~~~~ 218 (229)
.+++.++..+.... ... +....+.+.+....+.++..+|+|++||+.+|++++ ++++|||+.. ||+...
T Consensus 77 ~ltv~Dt~g~~~~~-~~~-----e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 77 RLTVVDTPGYGDAI-NCR-----DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV 146 (301)
T ss_dssp EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH
T ss_pred Ccchhhhhhhhhhc-CcH-----HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH
Confidence 13444443332111 000 011111111222223556689999999998888874 9999999984 998664
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.41 E-value=4.7e-13 Score=113.26 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=61.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-Ccccc-CCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-~G~~~-~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g 155 (229)
+++|++++|+||||||||||+++|+|++ .|+ +|++. .+..+ . +. .......
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~---~~~~~G~I~~~g~~i----------~-~~-~~~~~~~------------ 74 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI---NQTKSYHIITIEDPI----------E-YV-FKHKKSI------------ 74 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH---HHHCCCEEEEEESSC----------C-SC-CCCSSSE------------
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC---CCCCCCEEEEcCCcc----------e-ee-cCCccee------------
Confidence 7899999999999999999999999999 676 77642 22111 0 00 0000000
Q ss_pred CCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHH
Q 026996 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ 223 (229)
..+. .++.. . ..-|+++++++..+|+++++|||+ |+.....+.+
T Consensus 75 v~q~-----------~~gl~----~------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~ 118 (261)
T 2eyu_A 75 VNQR-----------EVGED----T------KSFADALRAALREDPDVIFVGEMR---DLETVETALR 118 (261)
T ss_dssp EEEE-----------EBTTT----B------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH
T ss_pred eeHH-----------HhCCC----H------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH
Confidence 0000 01100 0 122899999999999999999999 8876655443
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.41 E-value=6.2e-13 Score=112.95 Aligned_cols=122 Identities=15% Similarity=0.065 Sum_probs=74.4
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCC-CcEEEEeecCCccccCccCChhhhHHHHHHhcCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~-~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~ 156 (229)
+.+|++++|+||||||||||++.|++.. . .|..+.+.... .....++.... +. +.+.......+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~---~--~g~~~~g~~~~~~~~v~~~~~e~--------~~-~~~~~r~~~~g~ 92 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI---A--GGPDLLEVGELPTGPVIYLPAED--------PP-TAIHHRLHALGA 92 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH---H--TCCCTTCCCCCCCCCEEEEESSS--------CH-HHHHHHHHHHHT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH---h--cCCCcCCCccCCCccEEEEECCC--------CH-HHHHHHHHHHHh
Confidence 7899999999999999999999999976 2 35433332211 11111121111 11 111111111222
Q ss_pred CCCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC--CCChhhH
Q 026996 157 PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW 218 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~--~LD~~~~ 218 (229)
..+......+++.+.. ..+.++..||+|+.+++ ++++.+|+++|+|||++ .+|+...
T Consensus 93 --~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~ 153 (279)
T 1nlf_A 93 --HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENAS 153 (279)
T ss_dssp --TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred --hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCch
Confidence 1223334455665543 23567889999997765 56778999999999999 8887544
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.39 E-value=5.1e-13 Score=114.24 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=30.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G 113 (229)
+++|++++|+|+||||||||++.|+|.. .|++|
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~---~~~~G 64 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW---GTAMG 64 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH---HHTSC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH---HHHcC
Confidence 8999999999999999999999999998 66666
No 94
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=1.6e-13 Score=110.78 Aligned_cols=165 Identities=10% Similarity=-0.015 Sum_probs=82.4
Q ss_pred hhhhhhhhhcCCc----ccccCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCccccCCCCCC-CcEEEEeecCCcc
Q 026996 63 TSLKVLCSQRREI----PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP-PDVATVLPMDGFH 135 (229)
Q Consensus 63 ~~~~~l~~~~~~~----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~--~~~~p~~G~~~~~~~~~-~~~g~~i~~~~~~ 135 (229)
++++++++.|+.. +.+.+|.+++|+|+||||||||++.|+|.. ....|+.|.....+... ...-.++...++.
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~ 83 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 83 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCc
Confidence 4566666666432 348899999999999999999999999864 11136666532100000 0000111122221
Q ss_pred ccCccCC----hhhhHHHHHHh-cC---------C--CCCccHHHHHHHHHhhhhc---CCCCCCCCCccccch-hhhhh
Q 026996 136 LYLSQLD----AMEDPKEAHAR-RG---------A--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP-VEDDI 195 (229)
Q Consensus 136 ~~~~~l~----~~~~~~~~~~~-~g---------~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~R-l~~a~ 195 (229)
....... ....+...... .. . ........+...+...... ...++..+|+||+|| +..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVR 163 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHH
Confidence 0000000 00111111111 00 0 0111112233333322221 123456789999999 78899
Q ss_pred hhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+++.+++++++|+|++++|.....++.+.+..
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 98888988899999999999999998887754
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.36 E-value=2.4e-13 Score=130.40 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=69.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+. |++++|+||||||||||+|+|+|+.. .++.|.+... ....+-..+.. ...++..+++
T Consensus 574 l~-g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vpa-----~~~~i~~v~~i---~~~~~~~d~l---------- 632 (765)
T 1ewq_A 574 MA-HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVPA-----EEAHLPLFDGI---YTRIGASDDL---------- 632 (765)
T ss_dssp ES-SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBSS-----SEEEECCCSEE---EEECCC--------------
T ss_pred CC-CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceeeh-----hccceeeHHHh---hccCCHHHHH----------
Confidence 44 99999999999999999999999861 2566753311 11111000100 0001111110
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhh--hcCCcEEEEcCC---cCCCChhhH-HHHHHHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSSMFD 226 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al--~~~~~illlDe~---~~~LD~~~~-~~~~~ll~ 226 (229)
...+|+++++++.++.++ +.+|+++|+||| |+.+|.... ..+.+.+.
T Consensus 633 ----------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~ 685 (765)
T 1ewq_A 633 ----------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 685 (765)
T ss_dssp ------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH
Confidence 113578999999999998 999999999999 899998764 35666553
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.35 E-value=6.1e-13 Score=108.69 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=64.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+||||||||||+++|+|.. .+..|... ...+. +..++... .. .+.+....+..++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~---~~~~~~g~------~~~~~-i~~~~~~~----~~-~~~i~~~~~~~~~~ 86 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV---QLPPEEGG------LNGSV-IWIDTENT----FR-PERIREIAQNRGLD 86 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT---TSCGGGTC------CSCEE-EEEESSSC----CC-HHHHHHHHHHTTSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH---hcccccCC------CCCEE-EEEECCCC----CC-HHHHHHHHHHcCCC
Confidence 8999999999999999999999999976 44433210 01122 22232211 11 12233333333332
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCcccc-chhhhhhhhh-------cCCcEEEEcCCcCCCChh
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG-DPVEDDILVG-------LQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k-~Rl~~a~al~-------~~~~illlDe~~~~LD~~ 216 (229)
.. ++.+++.... .++.+++ +.+..+..++ .+|+++++|||++.+|+.
T Consensus 87 ----~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 87 ----PD---EVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp ----HH---HHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred ----HH---HHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 11 4555554321 2333332 2233344433 489999999999999873
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.35 E-value=2.6e-13 Score=119.35 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=38.7
Q ss_pred hhhhhhhhhcC-Cc------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 63 TSLKVLCSQRR-EI------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 63 ~~~~~l~~~~~-~~------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
++.+++++.|+ +. +.|.+|+++||+|+||||||||+++|+|+. .|+.|.
T Consensus 46 i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~---~~~~g~ 101 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA---SADIIV 101 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS---CCSEEE
T ss_pred eeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC---CCCEEE
Confidence 44455555554 32 448999999999999999999999999999 676664
No 98
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.34 E-value=8.3e-14 Score=135.70 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=67.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+||||||||||||+|+++.- .+..|..+ +..... +..-.. ... ..+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~~v-----pa~~~~-i~~~d~--------i~~-------~ig~- 725 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGSYV-----PAEEAT-IGIVDG--------IFT-------RMGA- 725 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTCCB-----SSSEEE-EECCSE--------EEE-------EC---
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCccc-----cchhhh-hhHHHH--------HHH-------hCCh-
Confidence 67899999999999999999999988741 11112110 111111 100000 000 0010
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHH-HHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 226 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~-~ll~ 226 (229)
........++||+||++++.++++ +.+|+++|+|||++++|+.....+. .++.
T Consensus 726 ---------------~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~ 779 (918)
T 3thx_B 726 ---------------ADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLE 779 (918)
T ss_dssp -----------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 011123456889999999999888 6899999999999999998776665 4443
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.34 E-value=5.9e-15 Score=123.21 Aligned_cols=134 Identities=12% Similarity=0.016 Sum_probs=75.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCccccCCC-CCCCcEEEEe---ecCCccccCccCChhhhHHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQ-VKPPDVATVL---PMDGFHLYLSQLDAMEDPKEAHA 152 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~---Gl~~~~~p~~G~~~~~~-~~~~~~g~~i---~~~~~~~~~~~l~~~~~~~~~~~ 152 (229)
++++++|+|+||||||||+++|+ |+. .|+.|++.... ......+..+ .+.+.... ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~---~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ---HLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC---CEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe---EecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999 776 78888743221 0011111111 11111111 1223344333221
Q ss_pred h--------cCCCCCccHHHHHHHHH--h--------------hhhcCCCCCCCCCccccchhhhhhhh-hcCCcEEEEc
Q 026996 153 R--------RGAPWTFNPLLLLNCLK--N--------------LRNQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 207 (229)
Q Consensus 153 ~--------~g~~~~~~~~~~~~~l~--~--------------l~~~~~~~~~~lSgG~k~Rl~~a~al-~~~~~illlD 207 (229)
. .+.+.. ......+.. . +....+.++..+|| |+ +++ +.+|+++++|
T Consensus 101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1 122221 111111111 1 11112445667888 55 455 7999999999
Q ss_pred ----CCcCCCChhhHHHHHHHHHh
Q 026996 208 ----GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 ----e~~~~LD~~~~~~~~~ll~~ 227 (229)
||++++|+.....+.+++..
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHH
Confidence 99999999988888777643
No 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.32 E-value=9.9e-14 Score=114.84 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=26.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHH--Hhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVV--RRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~--Gl~ 105 (229)
|++|++++|+||||||||||+++|+ |+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~ 56 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 663
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.30 E-value=5.8e-13 Score=108.72 Aligned_cols=126 Identities=9% Similarity=0.048 Sum_probs=70.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+||||||||||++.|++.. .++.|. ..++..+. +..+ +.......+..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~---~~~~~~-----------v~~~~~~~--------~~~~-~~~~~~~~~~~ 76 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG---LRDGDP-----------CIYVTTEE--------SRDS-IIRQAKQFNWD 76 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH---HHHTCC-----------EEEEESSS--------CHHH-HHHHHHHTTCC
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH---HHCCCe-----------EEEEEccc--------CHHH-HHHHHHHhcch
Confidence 7899999999999999999999999887 343332 11121111 1111 11111122321
Q ss_pred CCccHHHHHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhhcCCc--EEEEcCCcCCC--ChhhHHHHHHHHH
Q 026996 158 WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDVSSMFD 226 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~~~~~--illlDe~~~~L--D~~~~~~~~~ll~ 226 (229)
...........++.+.. .........|.++.++...+.+...+|+ ++++|||++++ |+..+.++.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~ 151 (235)
T 2w0m_A 77 FEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLK 151 (235)
T ss_dssp CGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHH
T ss_pred HHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHH
Confidence 11000000000000000 0011112347888777766666667999 99999999777 9877777776654
No 102
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.28 E-value=4.5e-12 Score=123.80 Aligned_cols=102 Identities=15% Similarity=0.059 Sum_probs=59.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+||||||||||||+|+++.- .++.|.+ .+.....+..-+.. ++ ..+..
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~i-----~~----------~ig~~ 715 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDCI-----LA----------RVGAG 715 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSEE-----EE----------ECC--
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHHH-----HH----------hcCch
Confidence 67899999999999999999999955430 1222210 11111111110000 00 01100
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhh--hcCCcEEEEcCCcCCCChhhHHHH
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al--~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
+.....+|+++.++..++.++ +.+|+++|+|||+.++|+.....+
T Consensus 716 -------------------d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i 762 (934)
T 3thx_A 716 -------------------DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL 762 (934)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred -------------------hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence 111234666666666666666 899999999999999999876665
No 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=117.11 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=70.7
Q ss_pred cchhhhhhhhhcCCcccccCC-eEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc--ccCC--CCCC-CcEEEEeecCCc
Q 026996 61 NKTSLKVLCSQRREIPVVEAR-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDS--QVKP-PDVATVLPMDGF 134 (229)
Q Consensus 61 ~~~~~~~l~~~~~~~~~i~~G-eiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~--~~~~--~~~~-~~~g~~i~~~~~ 134 (229)
..+.+++|.+.|++..++..= -.++|+|+||||||||+++|+|.. .++.|. .... .... ...+.+++.++.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~---~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTD---LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCC---CCCCCCCSCC-----CCEEEEEECC------
T ss_pred CcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCC---CCCCCCCCcccCCccceeeeeEEEEEecCCc
Confidence 347788888999876544332 236999999999999999999987 554442 1110 0000 011221111221
Q ss_pred cccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCc---EEEEcCCc-
Q 026996 135 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK---VVIVDGNY- 210 (229)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~---illlDe~~- 210 (229)
. ..+++.+++.+..... ....+..+.+.++. .++.++++|++++++++.+|+ +|++|||+
T Consensus 87 ~---~~Ltv~Dt~g~~~~~~---~~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 87 Q---LLLTIVDTPGFGDAVD---NSNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp C---EEEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred c---cceeeeechhhhhhcc---chhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 1 1134555543322110 01111222222221 344567889999999999999 99999999
Q ss_pred CCCChhhH
Q 026996 211 LFLDGGVW 218 (229)
Q Consensus 211 ~~LD~~~~ 218 (229)
.++|+...
T Consensus 151 ~~L~~~d~ 158 (418)
T 2qag_C 151 HGLKPLDI 158 (418)
T ss_dssp CSCCHHHH
T ss_pred cCCCHHHH
Confidence 69998653
No 104
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.27 E-value=3.9e-13 Score=132.50 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=63.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCCCc
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 160 (229)
|++++|+||||||||||||+| |++ .+- ...|.++++... .+++.+++. ...+..+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~---~~~-----------aqiG~~Vpq~~~-----~l~v~d~I~---~rig~~d-- 843 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL---AVM-----------AQMGCYVPAEVC-----RLTPIDRVF---TRLGASD-- 843 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH---HHH-----------HTTTCCEESSEE-----EECCCSBEE---EECC-----
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH---HHH-----------hheeEEeccCcC-----CCCHHHHHH---HHcCCHH--
Confidence 899999999999999999999 987 210 112211222211 122222210 0111100
Q ss_pred cHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhH-HHHHHHHH
Q 026996 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW-KDVSSMFD 226 (229)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~-~~~~~ll~ 226 (229)
.......++|++|++ ++++++++.+|+++|+|||+.++|+... ..+.+++.
T Consensus 844 --------------~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~ 895 (1022)
T 2o8b_B 844 --------------RIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVK 895 (1022)
T ss_dssp --------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred --------------HHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHH
Confidence 011223466777664 8999999999999999999999998763 33444443
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.24 E-value=1.1e-11 Score=109.37 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=28.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 111 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~ 111 (229)
+.+|++++|+||||||||||+++|+|++ .|+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~---~~~ 150 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL---NNT 150 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH---HHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc---cCC
Confidence 5688899999999999999999999999 555
No 106
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.23 E-value=7.2e-12 Score=108.22 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=30.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
+|++++|+||||||||||+++|+|++ .|+.|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll---~~~~g~V 133 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY---QNLGKKV 133 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH---HTTTCCE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH---HhcCCEE
Confidence 69999999999999999999999999 8888864
No 107
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.23 E-value=3.9e-12 Score=99.80 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=39.9
Q ss_pred hhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC
Q 026996 64 SLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (229)
Q Consensus 64 ~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~ 117 (229)
..+++++.|++.. .+++|++++|+||||||||||+|+|+|++ |++|++..
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~ 65 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKS 65 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCC
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEE
Confidence 3445666665442 26899999999999999999999999987 78998643
No 108
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.22 E-value=2.7e-12 Score=102.00 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCC
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 111 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~~~p~ 111 (229)
++++|+|+||||||||+++|+|++ .|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~---~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL---RER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH---HHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---hhc
Confidence 579999999999999999999999 555
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.22 E-value=4.8e-12 Score=118.87 Aligned_cols=113 Identities=8% Similarity=0.040 Sum_probs=60.8
Q ss_pred EEEECCCCCcHHHHHHHHHHhhcccCC-CCccccCCCCC---------CC---cEEEEeecCCccccCccCChhhhHHHH
Q 026996 84 VGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK---------PP---DVATVLPMDGFHLYLSQLDAMEDPKEA 150 (229)
Q Consensus 84 igLiG~NGsGKSTLlr~L~Gl~~~~~p-~~G~~~~~~~~---------~~---~~g~~i~~~~~~~~~~~l~~~~~~~~~ 150 (229)
+||+|+||||||||+++|+|++ .| ++|.+...+.. .. ..+++ .++.. ..+..++.+++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~---~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v-~Q~~~--l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA---LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ-DYEIE--ISDASEVEKEINKA 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC----CC--CCCHHHHHTTHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCC---CCCCCCeEEEcCEEEEEecCCccccceeEEeee-ccccc--CCCHHHHHHHHHHH
Confidence 8999999999999999999998 78 79985433210 00 01110 00000 00001122222111
Q ss_pred HHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC------cCCCChhhHHHHHHH
Q 026996 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN------YLFLDGGVWKDVSSM 224 (229)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~------~~~LD~~~~~~~~~l 224 (229)
. ..+.. .. .+..++++.++.+....|+++|+||| ++++|+..+.++.++
T Consensus 122 ~------------------~~~~~-~~------~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~l 176 (608)
T 3szr_A 122 Q------------------NAIAG-EG------MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTL 176 (608)
T ss_dssp H------------------HHHHC-SS------SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHH
T ss_pred H------------------HHhcC-Cc------cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHH
Confidence 1 11110 00 12234556666666678999999999 999999999899888
Q ss_pred HHh
Q 026996 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+..
T Consensus 177 i~~ 179 (608)
T 3szr_A 177 IKK 179 (608)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 110
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.20 E-value=5.1e-12 Score=100.70 Aligned_cols=130 Identities=17% Similarity=0.038 Sum_probs=67.8
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc-CCCCC--CCcEEEEeecCCccccC--ccCChhhhHHHHH
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVK--PPDVATVLPMDGFHLYL--SQLDAMEDPKEAH 151 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~-~~~~~--~~~~g~~i~~~~~~~~~--~~l~~~~~~~~~~ 151 (229)
.+++|++++|+|+||||||||+|+|+|. |+.|.++ +++.. ....+. ..++.... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGR---IDPWLPQSHQQNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSC---CCTTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhccc---ccCCccchhhhhHHHHHHHHHHH
Confidence 3789999999999999999999999985 4556532 22111 000000 00111000 0112333332221
Q ss_pred Hh---cCCC---CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHH
Q 026996 152 AR---RGAP---WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 152 ~~---~g~~---~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll 225 (229)
.. .+.. ....... .++.+.. ...++..+|+|+++++.++|++..+|+++ +|+...+.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~---~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 GRYAKEGYFVILDGVVRPD---WLPAFTA-LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHHHHTSCEEEECSCCCTT---TTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred HHHhccCCeEEEeccCcHH---HHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 11 1110 0000000 0011110 13345679999999999999999888765 5776666666554
Q ss_pred H
Q 026996 226 D 226 (229)
Q Consensus 226 ~ 226 (229)
.
T Consensus 145 ~ 145 (191)
T 1zp6_A 145 A 145 (191)
T ss_dssp T
T ss_pred h
Confidence 3
No 111
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.19 E-value=3.3e-12 Score=114.92 Aligned_cols=138 Identities=13% Similarity=0.047 Sum_probs=77.8
Q ss_pred chhhhhhhhhcCCcc-----cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCC---cE--EEEee
Q 026996 62 KTSLKVLCSQRREIP-----VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP---DV--ATVLP 130 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~-----~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~-~~~~~~~~---~~--g~~i~ 130 (229)
.+.++++.+.|+... ...+|++++|+|||||||||||++|+|++ .|+.|++ +.++.+.. .. ..+..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l---~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL---NSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH---CCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc---CCCCCEEEEecccchhccCCcceEEEcc
Confidence 345566655554331 24689999999999999999999999999 8889984 33332211 00 00000
Q ss_pred cCCccc---------cCcc----------CChhhhHHHHHHhcCC-----CCCccHHHHHHHHHhhhhcCCCCCCCCCcc
Q 026996 131 MDGFHL---------YLSQ----------LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG 186 (229)
Q Consensus 131 ~~~~~~---------~~~~----------l~~~~~~~~~~~~~g~-----~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG 186 (229)
..++.+ +.+. .+..+++... ..|. ....+.......+..++.........||||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~--~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg 297 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS--LTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGV 297 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH--HhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 001100 1110 1222222221 1221 011222334445555554333455689999
Q ss_pred ccchhhhhhhhhcCCcEEEE
Q 026996 187 VGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 187 ~k~Rl~~a~al~~~~~illl 206 (229)
|+|| ++++++.+|++..-
T Consensus 298 ~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEE--EEEEECTTTCEEEE
T ss_pred HHHH--hhhhhcCCCCccCC
Confidence 9999 89999999999764
No 112
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.18 E-value=4.1e-12 Score=111.56 Aligned_cols=101 Identities=37% Similarity=0.693 Sum_probs=76.4
Q ss_pred EEEeecCCccccCccCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhc-----------------------------C
Q 026996 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------G 176 (229)
Q Consensus 126 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----------------------------~ 176 (229)
..++.+|+|+..+..++...+.......+|.|..++...+.+.++.|... .
T Consensus 156 v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 2ga8_A 156 AQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIP 235 (359)
T ss_dssp EEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCC
T ss_pred EEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCc
Confidence 55689999987765554433333345678889999999888888877654 3
Q ss_pred CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
...++.|+.....++.-...+...++++|+|++.++++++.|..+.+++|
T Consensus 236 ~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D 285 (359)
T 2ga8_A 236 DIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA 285 (359)
T ss_dssp CEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred eEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence 44577888887777766666656679999999999999778889999988
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.18 E-value=7.6e-12 Score=110.35 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=69.4
Q ss_pred ccccC--CeEEEEECCCCCcHHHHHHHHHHhhcccCCCC----ccccCCCCCCCcEEEEeecCCccccCccCChhhhHHH
Q 026996 76 PVVEA--RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (229)
Q Consensus 76 ~~i~~--GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~----G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 149 (229)
..|.+ |++++|+|+||||||||+|+|+|++ .|+. |++...+. .++.......... ..+.+
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~---~~~~~~e~G~i~i~~~----------~~~~~~~~~~~~~-~~I~~ 228 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVF---NTTSAWEYGREFVFEK----------LGGDEQAMQYSDY-PQMAL 228 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT---TCEEECCTTHHHHHHS----------SSSCTTSSCTTTH-HHHHH
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh---CCCcchhhHHHHHHhh----------cCCCcccCChhHH-HHHHH
Confidence 34788 9999999999999999999999999 7887 65321100 0000000000011 11221
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhhhcC----CCCCCCCCccccchhhhhhhh-hcCCcEEEEcC---Cc------CCCCh
Q 026996 150 AHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY------LFLDG 215 (229)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~l~~l~~~~----~~~~~~lSgG~k~Rl~~a~al-~~~~~illlDe---~~------~~LD~ 215 (229)
..... .....++.+++.... +..+..+++|++++..++.+. ..+|+++++|| |+ +++|+
T Consensus 229 ~~q~~-------~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~ 301 (365)
T 1lw7_A 229 GHQRY-------IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQ 301 (365)
T ss_dssp HHHHH-------HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------C
T ss_pred HHHHH-------HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccH
Confidence 11100 000112222222111 001123456667777777765 36899999998 54 58899
Q ss_pred hhHHHHHHHHH
Q 026996 216 GVWKDVSSMFD 226 (229)
Q Consensus 216 ~~~~~~~~ll~ 226 (229)
..+..+.+.+.
T Consensus 302 ~~r~~l~~~l~ 312 (365)
T 1lw7_A 302 KQRQQFQQLLK 312 (365)
T ss_dssp CSHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888773
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.17 E-value=2.2e-11 Score=107.10 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=69.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+||||||||||++.|++... ..|+.|. . -|.++.++..... . .+.+.+.....++
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~-~~~~~Gg-------~--~G~vi~i~~e~~~----~-~~~i~~i~q~~~~- 191 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQ-LPPEEGG-------L--NGSVIWIDTENTF----R-PERIREIAQNRGL- 191 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTS-------C--SCEEEEEESSSCC----C-HHHHHHHHHTTTC-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc-cchhcCC-------C--CCeEEEEeCCCCC----C-HHHHHHHHHHcCC-
Confidence 88999999999999999999999999861 1234420 0 0222333333211 1 1223333333222
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhh-------cCCcEEEEcCCcCCCChh
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~-------~~~~illlDe~~~~LD~~ 216 (229)
+.. ++++++..... ..+.++.+++.++.+++ .+|+++|+|||++++|..
T Consensus 192 ---~~~---~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 192 ---DPD---EVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp ---CHH---HHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred ---CHH---HHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 111 34444433211 12467778888888877 689999999999999875
No 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.15 E-value=5.1e-12 Score=111.35 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=59.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccC-CCCccccC--CC----CCCCcEEEEeecCCccccCccCChhhhHHHHH
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFD--SQ----VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~-p~~G~~~~--~~----~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 151 (229)
.+|++++|+|+||||||||+|+|+|.. . |+.|++.. +. ......+. +.++.+.... .++.+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~---~~~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l~dt--pgv~e------ 280 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ---NEILTNDVSNVSGLGQHTTTAARLYH-FPHGGDVIDS--PGVRE------ 280 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS---SCCCCC-------------CCCEEEE-CTTSCEEEEC--HHHHT------
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc---cccccCCccccCCCCccceEEEEEEE-ECCCCEecCc--ccHHH------
Confidence 479999999999999999999999998 8 99998643 21 11222333 3333322111 12222
Q ss_pred HhcCCCCCccHHH----HHHHHHhhhh--cCCCCCCCCCccccchhhhhhhhh
Q 026996 152 ARRGAPWTFNPLL----LLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 152 ~~~g~~~~~~~~~----~~~~l~~l~~--~~~~~~~~lSgG~k~Rl~~a~al~ 198 (229)
.++. ...... +.++++.++. ..+.....+| |++||+++|.+++
T Consensus 281 --~~l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 281 --FGLW-HLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp --CCCC-CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred --hhhc-CCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 1211 111222 2233333333 3466778899 9999999998763
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.13 E-value=2.9e-10 Score=92.10 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=61.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 157 (229)
+++|++++|+|+||||||||++.|++ . ......++..+.. .+. +.+.......+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~-~----------------~~~~v~~i~~~~~------~~~-~~~~~~~~~~~~- 71 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL-L----------------SGKKVAYVDTEGG------FSP-ERLVQMAETRGL- 71 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH-H----------------HCSEEEEEESSCC------CCH-HHHHHHHHTTTC-
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH-H----------------cCCcEEEEECCCC------CCH-HHHHHHHHhcCC-
Confidence 88999999999999999999999999 4 1111222222210 121 111112222221
Q ss_pred CCccHHHHHHHHHhhhhcCCCCCCCCCccc--cchhhhhhhhhcC-CcEEEEcCCcCCCChh
Q 026996 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG 216 (229)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~--k~Rl~~a~al~~~-~~illlDe~~~~LD~~ 216 (229)
+.. ++++++. +...+.++ ++++..+++++.. |+++|+|||++.+|..
T Consensus 72 ---~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 72 ---NPE---EALSRFI------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp ---CHH---HHHHHEE------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred ---ChH---HHhhcEE------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 111 1233322 22344554 4567777788775 9999999999999863
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.12 E-value=4.5e-11 Score=115.25 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=57.5
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
++|++++|+||||||||||||+|+|+.- ....|..+. .....+-..+.. ...+...+++
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~--~~q~G~~vp-----a~~~~i~~~~~i---~~~~~~~d~l----------- 663 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL--MAYIGSYVP-----AQKVEIGPIDRI---FTRVGAADDL----------- 663 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH--HHTTTCCBS-----SSEEEECCCCEE---EEEEC----------------
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH--HHhcCcccc-----hhcccceeHHHH---HhhCCHHHHH-----------
Confidence 5799999999999999999999999851 123332111 111110000000 0001111110
Q ss_pred CccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHH
Q 026996 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~ 221 (229)
....+.+|.+|++ ++.+...+.+|+++|+|||+.++|+.....+
T Consensus 664 ------------------~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 664 ------------------ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp ------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred ------------------HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 1112356666654 4555556789999999999999988655443
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.11 E-value=1.2e-10 Score=103.11 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-Ccc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS 114 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~-~G~ 114 (229)
+++|++++|+||||||||||+++|+|++ .|+ +|+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~---~~~~~g~ 167 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI---NQTKSYH 167 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH---HHHSCCE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc---CcCCCcE
Confidence 7899999999999999999999999999 565 564
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=1.9e-10 Score=90.93 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=30.0
Q ss_pred hhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 70 ~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.|-..+.+.+|+.++|.||||+|||||+++|++.+
T Consensus 27 ~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 27 RVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333333456789999999999999999999999998
No 120
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.07 E-value=4.1e-11 Score=104.54 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=37.2
Q ss_pred hhhhhhcCCcc--c-------ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 66 KVLCSQRREIP--V-------VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 66 ~~l~~~~~~~~--~-------i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
+.+.+.++... . .++|++++|+||||||||||+++|+|++ .|+.|+
T Consensus 105 ~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l---~~~~g~ 159 (328)
T 3e70_C 105 EAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL---KNHGFS 159 (328)
T ss_dssp HHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH---HHTTCC
T ss_pred HHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCE
Confidence 44666666542 1 2689999999999999999999999999 788775
No 121
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.07 E-value=5.4e-11 Score=92.30 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=46.2
Q ss_pred CCCCCCCCccccchhhhh------hhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 177 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a------~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+.++..|||||+||+++| ++++.+|+++|+||||++||+..+..+.+++..
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 108 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 108 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 567889999999999876 789899999999999999999999999988764
No 122
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.04 E-value=1.5e-11 Score=101.37 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.7
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+..++|++++|+||||||||||+++|+|++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 458899999999999999999999999998
No 123
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.02 E-value=1.2e-11 Score=114.16 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=30.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHH--HHHhhcccCCCCcc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKAS 114 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~--L~Gl~~~~~p~~G~ 114 (229)
|++|++++|+||||||||||+++ ++|++ .|++|.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~---~~~~g~ 71 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII---EFDEPG 71 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH---HHCCCE
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH---hCCCCE
Confidence 89999999999999999999999 78998 666664
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=8.3e-10 Score=85.47 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+.++|+||||+|||||+++|++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999998
No 125
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=1.1e-10 Score=100.51 Aligned_cols=113 Identities=14% Similarity=-0.004 Sum_probs=66.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC----CCCCC--------CcEEEEeecCCccccC--ccCCh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD----SQVKP--------PDVATVLPMDGFHLYL--SQLDA 143 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~----~~~~~--------~~~g~~i~~~~~~~~~--~~l~~ 143 (229)
+..|++++|+||||||||||+|+|+ +. .|+.|++.. +.... +..|++++..++.... ..++.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~---~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE---ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC---CCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh---hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4579999999999999999999999 88 899999643 32221 1345555444432111 12444
Q ss_pred hhhH--HHH------HHhcCC-CCCccHHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhh
Q 026996 144 MEDP--KEA------HARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDI 195 (229)
Q Consensus 144 ~~~~--~~~------~~~~g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~ 195 (229)
+++ .+. ....+. ........+.++++.++.. .+.++..||+..++++.+|+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 111 112221 2233344677777766653 24566678886666676665
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=104.89 Aligned_cols=36 Identities=0% Similarity=-0.116 Sum_probs=29.4
Q ss_pred hhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHH
Q 026996 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 191 l~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~ 226 (229)
+.++.+|...++++++|+++..|.+.....+.+.+.
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~ 202 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKIT 202 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHH
Confidence 678888888999999999999998876666655554
No 127
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.95 E-value=1.8e-09 Score=93.17 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=67.4
Q ss_pred hhhhhhcCCc----ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccC
Q 026996 66 KVLCSQRREI----PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 141 (229)
Q Consensus 66 ~~l~~~~~~~----~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l 141 (229)
+.+.+.++.. +...+|++++|+|+|||||||+++.|++.+ .++.|+ ..++..|.+. .
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l---~~~g~k-----------V~lv~~D~~r---~-- 145 (306)
T 1vma_A 85 EIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF---VDEGKS-----------VVLAAADTFR---A-- 145 (306)
T ss_dssp HHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH---HHTTCC-----------EEEEEECTTC---H--
T ss_pred HHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH---HhcCCE-----------EEEEcccccc---H--
Confidence 3455556543 125689999999999999999999999998 454442 1222223221 0
Q ss_pred ChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchh---hhhhhhhcCCcEEEEcCCcC
Q 026996 142 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl---~~a~al~~~~~illlDe~~~ 211 (229)
... +.+..+.+.++.. .++..|+|+.+++ ++++++..+++++|+|+|..
T Consensus 146 ~a~------------------eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 146 AAI------------------EQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHH------------------HHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHH------------------HHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 000 1111222222221 1346688999998 78888889999999999975
No 128
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.94 E-value=6.4e-09 Score=89.26 Aligned_cols=127 Identities=16% Similarity=0.076 Sum_probs=74.6
Q ss_pred hhhhhhhhhcCCc---ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCc
Q 026996 63 TSLKVLCSQRREI---PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS 139 (229)
Q Consensus 63 ~~~~~l~~~~~~~---~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~ 139 (229)
+..+++++.|+.. ..+.+|++++|+|+||+||||+++.|++.+ .+..|+ ..++..|.+ .
T Consensus 77 ~~~~~l~~~~~~~~~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~---~~~~~~-----------v~l~~~d~~---~- 138 (295)
T 1ls1_A 77 TVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY---KGKGRR-----------PLLVAADTQ---R- 138 (295)
T ss_dssp HHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTTTHHHHHHHHHHHH---HHTTCC-----------EEEEECCSS---C-
T ss_pred HHHHHHHHHHCCCCceeecCCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCe-----------EEEecCCcc---c-
Confidence 4567788888653 123389999999999999999999999998 444442 111222221 1
Q ss_pred cCChhhhHHHHHHhcCCCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCC-cCCCChhhH
Q 026996 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-YLFLDGGVW 218 (229)
Q Consensus 140 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~-~~~LD~~~~ 218 (229)
.... . ....+.+..+..........+-.+.+|.+++.+...+++++|+|+| ++++|....
T Consensus 139 --~~~~--~---------------ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 139 --PAAR--E---------------QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp --HHHH--H---------------HHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred --HhHH--H---------------HHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 1000 0 0001111111110000001112233467777777689999999999 999998777
Q ss_pred HHHHHHHH
Q 026996 219 KDVSSMFD 226 (229)
Q Consensus 219 ~~~~~ll~ 226 (229)
.++.++.+
T Consensus 200 ~~l~~~~~ 207 (295)
T 1ls1_A 200 GELARLKE 207 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77766544
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.88 E-value=9e-09 Score=84.41 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=26.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+++|++++|+||||||||||++.|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999999999995
No 130
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.88 E-value=1.3e-09 Score=86.55 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=45.4
Q ss_pred CCCCCCCCccccchhhhhhhhhc----CCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 177 SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 177 ~~~~~~lSgG~k~Rl~~a~al~~----~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..++..||||||||+++|++++. +|+++|+|||+++||+.....+.+++..
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~ 113 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE 113 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHH
Confidence 45567899999999999999974 5799999999999999999999998865
No 131
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.87 E-value=2.6e-09 Score=94.15 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.7
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
.+++|++++|+||||||||||+++|+|++ .|++|.+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~---~~~~g~I 206 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEI---PFDQRLI 206 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTS---CTTSCEE
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcC---CCCceEE
Confidence 48899999999999999999999999999 7777753
No 132
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.86 E-value=1.3e-09 Score=99.36 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=34.6
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~ 117 (229)
+.|++ ++++|+||||||||||+++|+|++ .|++|++..
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~I~~ 62 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTAL---IPDLTLLNF 62 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHH---CCCTTTCCC
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCC---CCCCCEEEE
Confidence 45888 999999999999999999999999 999999643
No 133
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.82 E-value=1.3e-08 Score=87.35 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=29.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G 113 (229)
..+|++++|+|+||+||||+++.|++.+ .++.|
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l---~~~~G 134 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAIS---MLEKH 134 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHH---HHTTC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH---HHhcC
Confidence 3579999999999999999999999998 55566
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.80 E-value=1.8e-11 Score=110.07 Aligned_cols=124 Identities=20% Similarity=0.172 Sum_probs=68.2
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCC-ccccCccCChh-hhHHHHHHhc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAM-EDPKEAHARR 154 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~-~~~~~~~l~~~-~~~~~~~~~~ 154 (229)
.++.|+.++|+|+||||||||+++|+|.. |..... ...+..+..|.+ .+++ ......+.... +.. ....
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~-~ftTl~p~~G~V-~~~~~~~~~l~DtpGli~~a---~~~~ 223 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPY-PFTTLSPNLGVV-EVSEEERFTLADIPGIIEGA---SEGK 223 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCC-TTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCG---GGSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCc-ccceecceeeEE-EecCcceEEEEeccccccch---hhhh
Confidence 38889999999999999999999999974 211110 001123445543 3332 11000000100 000 0000
Q ss_pred CCCCCccHHHHHHHHHhhh---h--cC-CCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhH
Q 026996 155 GAPWTFNPLLLLNCLKNLR---N--QG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218 (229)
Q Consensus 155 g~~~~~~~~~~~~~l~~l~---~--~~-~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~ 218 (229)
++. ......++... . .. +.++..||+|+++++.++++++..|.++++ +.+|....
T Consensus 224 ~L~-----~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 224 GLG-----LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CSC-----HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred hhh-----HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 010 01111111111 0 11 344557899999999999999999999999 78887654
No 135
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.80 E-value=4e-09 Score=102.83 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=53.3
Q ss_pred HHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCCc--EEEEcCCcCCCChhhHHHHHHHHHhh
Q 026996 166 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 166 ~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~~--illlDe~~~~LD~~~~~~~~~ll~~~ 228 (229)
.+.+..++.. .+.++.+|||||+||+++|++|+.+|+ ++||||||++||+....++.+++...
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L 512 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL 512 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 4445555543 467888999999999999999999777 99999999999999999999988753
No 136
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=1.1e-09 Score=87.44 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=32.8
Q ss_pred cchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
......|++++.+++++++| ++++|.....++.+.+..
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34577899999999999999 999999999999887754
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=2e-08 Score=87.16 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=24.7
Q ss_pred hhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 l~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
+..+++++|+|||.. ||+..+..+.+.+++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 457899999999999 999999999888764
No 138
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.78 E-value=5.9e-09 Score=101.60 Aligned_cols=86 Identities=12% Similarity=-0.016 Sum_probs=63.2
Q ss_pred CChhhhHHHHHHhcCCCCCcc---------HHHHHHHHHhhhhc---CCCCCCCCCccccchhhhhhhhhcC--CcEEEE
Q 026996 141 LDAMEDPKEAHARRGAPWTFN---------PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIV 206 (229)
Q Consensus 141 l~~~~~~~~~~~~~g~~~~~~---------~~~~~~~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~--~~illl 206 (229)
+++.+.+.+ ....+++.... ...-.+.+..++.. .+.++.+|||||+||+++|++|+.+ |+++||
T Consensus 452 ltV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llIL 530 (972)
T 2r6f_A 452 MSVTEALAF-FDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVL 530 (972)
T ss_dssp SBHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred CCHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 567777776 34444433100 11112345555543 5778999999999999999999998 499999
Q ss_pred cCCcCCCChhhHHHHHHHHHh
Q 026996 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 De~~~~LD~~~~~~~~~ll~~ 227 (229)
|||+++||+...+++.+++..
T Consensus 531 DEPTagLdp~~~~~L~~~L~~ 551 (972)
T 2r6f_A 531 DEPSIGLHQRDNDRLIATLKS 551 (972)
T ss_dssp ECTTTTCCGGGHHHHHHHHHH
T ss_pred eCcccCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 139
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.76 E-value=3.7e-09 Score=84.71 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=25.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|++++|+||||||||||+++|+|++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5689999999999999999999999986
No 140
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.76 E-value=4.3e-09 Score=84.88 Aligned_cols=27 Identities=41% Similarity=0.570 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++|++++|+||||||||||+++|+|++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999999998
No 141
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.74 E-value=2.3e-09 Score=93.67 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=42.7
Q ss_pred chhhhhhhhhcCCc-------ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 62 KTSLKVLCSQRREI-------PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 62 ~~~~~~l~~~~~~~-------~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
.++++++.+.|++. +.+.+|++++|+|+||||||||+++|+|++ .|+.|++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~---~~~~g~v 86 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL---TAAGHKV 86 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH---HHTTCCE
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh---hhCCCEE
Confidence 46677788877543 237899999999999999999999999999 7888873
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.74 E-value=4.8e-10 Score=95.22 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=25.6
Q ss_pred CCCCCccccchhhhhhhhhcCCcEEEEcCCcC
Q 026996 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 180 ~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~ 211 (229)
...|||||+||+.+++++..+|+++ |+++.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 3468999999999999999999975 88764
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.74 E-value=1.3e-09 Score=94.83 Aligned_cols=34 Identities=38% Similarity=0.549 Sum_probs=26.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCccc
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS 115 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~-~~p~~G~~ 115 (229)
+.++|.||||+|||||+++|+|.++. ..+++|.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 78999999999999999999998731 12445553
No 144
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.72 E-value=5.3e-09 Score=83.31 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|++++|+||||||||||+++|+|++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999998
No 145
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.69 E-value=4.2e-10 Score=93.25 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=37.1
Q ss_pred hhhhhhhhhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc
Q 026996 63 TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (229)
Q Consensus 63 ~~~~~l~~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~ 116 (229)
+.++++...|+....+.+ ++++|+||||||||||+++|+|++ .|++|++.
T Consensus 10 l~l~~~~~~~~~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~---~~~~G~i~ 59 (227)
T 1qhl_A 10 LTLINWNGFFARTFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL---IPDLTLLH 59 (227)
T ss_dssp EEEEEETTEEEEEECHHH-HHHHHHSCCSHHHHHHHHHHHHHH---SCCTTTC-
T ss_pred EEEEeeecccCCEEEEcC-cEEEEECCCCCCHHHHHHHHhccc---ccCCCeEE
Confidence 334444444433333555 788999999999999999999999 89999853
No 146
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.66 E-value=2.4e-08 Score=97.62 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=51.4
Q ss_pred HHHhhhhc---CCCCCCCCCccccchhhhhhhhhcC--CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~--~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+..++.. .+.++.+|||||+||+++|++|+.+ |+++|||||+++||+...+++.+++..
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~ 568 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTR 568 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 34555543 5778999999999999999999998 599999999999999999999888764
No 147
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.65 E-value=1.7e-09 Score=96.31 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=25.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+..|.++||+|+||+|||||+|+|+|.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 788999999999999999999999993
No 148
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.64 E-value=8.8e-09 Score=84.65 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=21.6
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVV-RRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~-Gl~ 105 (229)
+.+++|++++|+||||||||||+++|+ |++
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 448999999999999999999999999 987
No 149
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.63 E-value=1.3e-08 Score=93.05 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=32.6
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
.+.+|++++|+|+||||||||+++|+|++ .|+.|++
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll---~~~~G~V 324 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF---EQQGKSV 324 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH---HHTTCCE
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh---hhcCCeE
Confidence 37899999999999999999999999999 7777763
No 150
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.63 E-value=2.8e-08 Score=96.12 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=51.2
Q ss_pred HHHhhhhc---CCCCCCCCCccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+..++.. .+.++.+|||||+||+++|++|+.+| +++||||||++||+...+.+.+++..
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~ 426 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALEN 426 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHH
Confidence 34444443 46788899999999999999999998 59999999999999999999988764
No 151
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.63 E-value=5.7e-08 Score=86.76 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=23.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVV 102 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~ 102 (229)
|++|++++|+||||||||||++.|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 7899999999999999999999654
No 152
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.61 E-value=2.7e-08 Score=91.55 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=45.2
Q ss_pred CCCCC-CccccchhhhhhhhhcCC--cEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 179 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 179 ~~~~l-SgG~k~Rl~~a~al~~~~--~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++..| ||||+||+++|++++.+| ++||+|||+++||+.....+.+++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~ 444 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR 444 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 45677 999999999999999999 99999999999999999999988764
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.60 E-value=2e-08 Score=80.42 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G 113 (229)
+.+|++++|+|||||||||++++|++.+ .|+.|
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~---~~~~~ 35 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP---STSYK 35 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT---TCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh---CCCeE
Confidence 6789999999999999999999999988 56555
No 154
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.60 E-value=9e-08 Score=76.35 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=30.2
Q ss_pred hhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
....|++++..+++.++| ++++|.....++.+.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 356788898999999999 999999988888877653
No 155
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.57 E-value=9.9e-08 Score=76.82 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=28.2
Q ss_pred cccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 75 IPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 75 ~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.+++|.+++|+|++||||||++++|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3558999999999999999999999999876
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.53 E-value=2.8e-08 Score=85.38 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~ 116 (229)
+..|++++|+||||||||||+|+|+|+. .|+.|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~---~~~~G~i~ 201 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGL---KLRVSEVS 201 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTC---CCC-----
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccc---ccccccee
Confidence 5579999999999999999999999999 89999964
No 157
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.52 E-value=8.7e-08 Score=75.43 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=30.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
..+.+| +.+|+|+||||||||+++|.+++ .+..|.
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~l---~~~~~~ 56 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILFVL---GGLSAK 56 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHHHT---TCCCTG
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHH---cCCccc
Confidence 346677 99999999999999999999998 666664
No 158
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.52 E-value=5.2e-08 Score=85.82 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=45.7
Q ss_pred CCCC-CCCccccchhhhhhhhh---------cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 178 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 178 ~~~~-~lSgG~k~Rl~~a~al~---------~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.++. .+|+||+||+++|++++ .+|+|+|+|||++.||+..+..+.+++..
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 3455 69999999999999999 89999999999999999999999998865
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.51 E-value=5.4e-08 Score=77.03 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|++++|+||||||||||+++|++.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
No 160
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.49 E-value=7.4e-08 Score=77.40 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|++++|+|+||||||||+++|++.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999999999987
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.46 E-value=2.4e-07 Score=86.77 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
..+++|+++++..+.....++.+|++||.-. |++..|..+.+.++.
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5688999999888888888999999999888 689899999888864
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.46 E-value=1.2e-07 Score=76.17 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=26.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|++++|+|+|||||||++++|++.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999998
No 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=2.5e-08 Score=86.11 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=25.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~ 116 (229)
.+.+|++++|+|+||+|||||+|+|+|.. .|+.|++.
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~---~~~~G~I~ 205 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL---GLRTNEIS 205 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc---ccccccee
Confidence 36689999999999999999999999998 89999864
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.43 E-value=3.3e-08 Score=82.66 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=31.3
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCcccc
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF 116 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~---Gl~~~~~p~~G~~~ 116 (229)
.+|++++|+|||||||||++++|+ |+. .++.|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~---~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR---LLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE---EEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC---cCCCCcee
Confidence 578999999999999999999999 766 78888854
No 165
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.40 E-value=7.1e-08 Score=88.73 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=32.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
+++|+.++|+||||||||||+++|+|++ .|+.|.+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i---~~~~gii 291 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI---PPDAKVV 291 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS---CTTCCEE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC---CCCCCEE
Confidence 7899999999999999999999999999 8999874
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.40 E-value=1.3e-07 Score=74.96 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|++++|+||||||||||+++|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999999998743
No 167
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.37 E-value=2.2e-07 Score=83.46 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=42.8
Q ss_pred CCCccccchhhhhhhhh----cCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 182 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 182 ~lSgG~k~Rl~~a~al~----~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.|||||++|+++|++++ .+|+++|+|||++.||+..+..+.+++..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 382 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR 382 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 59999999999999998 58999999999999999999999998864
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.36 E-value=2e-07 Score=75.52 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++|++++|+||||||||||+++|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999987
No 169
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.36 E-value=1.7e-07 Score=75.39 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=29.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G 113 (229)
..+|++++|+|+||||||||+++|++.+ .+..|
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~---~~~~~ 51 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL---REQGI 51 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH---HHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH---hhcCC
Confidence 6789999999999999999999999998 44444
No 170
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.34 E-value=1.5e-07 Score=78.90 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=27.4
Q ss_pred chhhhhh-hhhc-CCccc-------ccC---CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 62 KTSLKVL-CSQR-REIPV-------VEA---RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 62 ~~~~~~l-~~~~-~~~~~-------i~~---GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++++++ ++.| ++..+ |.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5677777 8888 44422 677 9999999999999999999999977
No 171
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.33 E-value=3.4e-07 Score=71.55 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=25.3
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999986
No 172
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.31 E-value=2.1e-07 Score=76.53 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.6
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
...++|++++|.|+||||||||+++|+|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34789999999999999999999999986
No 173
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.31 E-value=3.3e-07 Score=80.81 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.9
Q ss_pred CCCCCCccccchh------hhhhhhhcC-CcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 179 YAPSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 179 ~~~~lSgG~k~Rl------~~a~al~~~-~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
++..+||||+||+ ++|++++.+ |+++|+|||+++||+..+..+.+++..
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 332 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 4468999999988 556788889 999999999999999999999998864
No 174
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.28 E-value=3.6e-07 Score=71.07 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.|.+++|+|+|||||||++++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999987
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.26 E-value=3.1e-07 Score=82.38 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=35.0
Q ss_pred hhhhhhhhhcCCc--ccccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC
Q 026996 63 TSLKVLCSQRREI--PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 112 (229)
Q Consensus 63 ~~~~~l~~~~~~~--~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~ 112 (229)
+.++++ +.|++. ..+..|++++|+||||||||||+++|+++. .+.+
T Consensus 7 l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~---~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVL---GVRS 54 (430)
T ss_dssp EEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHT---TC--
T ss_pred EEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHhhh---cccc
Confidence 345555 567654 235678999999999999999999999998 5554
No 176
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.24 E-value=7.5e-07 Score=72.05 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=25.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+|++++|+||||||||||++.|++.+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999999987
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.23 E-value=4.1e-07 Score=84.35 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=30.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G 113 (229)
+++|++++|+|+||||||||+++|++.+ .|+.|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L---~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARL---MEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHH---HTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhh---cccCC
Confidence 7899999999999999999999999999 67776
No 178
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.23 E-value=1.8e-06 Score=70.53 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+++|++++|+|+||||||||+..++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999996655443
No 179
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.20 E-value=4e-06 Score=75.81 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=64.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHH-HHhc--
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARR-- 154 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~-- 154 (229)
+.+|+++.|.|++|+|||||+..|++.. .+..|. ...++... .+..+..... ....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~---~~~~g~----------~Vl~~s~E--------~s~~~l~~r~~~~~~~~ 258 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNV---ATKTNE----------NVAIFSLE--------MSAQQLVMRMLCAEGNI 258 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHH---HHHSSC----------CEEEEESS--------SCHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH---HHhCCC----------cEEEEECC--------CCHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999987 222221 12222221 1211111111 0111
Q ss_pred -------CCCCCccHHHHHHHHHhhhhcC--CCCCCCCCccccchhhhhhhhh--cCCcEEEEcCCcCCCCh
Q 026996 155 -------GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG--LQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 155 -------g~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~k~Rl~~a~al~--~~~~illlDe~~~~LD~ 215 (229)
+.....++..+.+.++.+.... -...+.+|.++.+. .++.++ ..++++++|++.+..+.
T Consensus 259 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 259 NAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp CHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhccC
Confidence 1111222334444444443211 11234678877653 444444 68999999999998853
No 180
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.08 E-value=1.2e-06 Score=75.63 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcc-----cCCCCccc
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKASS 115 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~~-----~~p~~G~~ 115 (229)
++++|+|+||||||||+|+|.|.... +.|+.|++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i 43 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV 43 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc
Confidence 68999999999999999999997411 14677874
No 181
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=2.4e-06 Score=68.39 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=25.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|.+++|+|++||||||+.+.|++.+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999987
No 182
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.06 E-value=2e-06 Score=75.68 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=26.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+.+| +++|+||||||||||+++|.++.
T Consensus 22 ~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 22 LNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 347788 99999999999999999999865
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.05 E-value=2.5e-06 Score=69.13 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=28.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
+.+++|+|++||||||++++|++.++-..++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 56899999999999999999999874223566663
No 184
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.04 E-value=3.5e-06 Score=69.98 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=60.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcC-----
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----- 155 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g----- 155 (229)
--+|+|.|+.||||||+.+.|+..++ .+ +++ . ......++..|.++.. +.. ..+. ....+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg--~~----~~d--~-~~~~~~~i~~D~~~~~---~~~-~~~~--~~~~g~~~f~ 86 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG--QN----EVD--Y-RQKQVVILSQDSFYRV---LTS-EQKA--KALKGQFNFD 86 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT--GG----GSC--G-GGCSEEEEEGGGGBCC---CCH-HHHH--HHHTTCSCTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh--hh----ccc--c-cCCceEEEecCccccc---cCh-hhhh--hhccCCCCCC
Confidence 35899999999999999999998662 01 000 0 0011234666776532 121 1111 11222
Q ss_pred CCCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCCh
Q 026996 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~ 215 (229)
.+..++...+.+.++.+........+.|+.....++.-... ....+++|+|++++..++
T Consensus 87 ~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~ 145 (252)
T 1uj2_A 87 HPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ 145 (252)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH
T ss_pred CcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH
Confidence 23345555666777766543222222222111111100011 135689999998876554
No 185
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.04 E-value=1.1e-05 Score=73.41 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=22.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++| +.|.||+|+|||||+|.|++..
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4455 7799999999999999999987
No 186
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.03 E-value=2.1e-06 Score=71.13 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=31.4
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++++++.|++.. .+++| ++|+||||||||||+++|++..
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 34556666665432 25667 8999999999999999999987
No 187
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.02 E-value=3.6e-06 Score=65.96 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|++++|+|++||||||++++|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999987
No 188
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.01 E-value=2.5e-06 Score=71.85 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=31.9
Q ss_pred hhhhhhhhhcCCcc-------cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 63 TSLKVLCSQRREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 63 ~~~~~l~~~~~~~~-------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++++++.|+... .+++| ++|+||||||||||+++|++..
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 34566677665432 25667 8999999999999999999987
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.00 E-value=2.5e-05 Score=70.27 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+++++|+||+||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999988
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.99 E-value=4.5e-06 Score=73.11 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=25.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+++.|.|+||+|||||+..++...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999988888765
No 191
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.99 E-value=3.6e-06 Score=74.51 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=27.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|++++|+||||||||||+++|+|..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 48899999999999999999999999976
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.95 E-value=2.2e-05 Score=68.25 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCe--EEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARH--IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~Ge--iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+. .+.|.||+|+|||||++.+++..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456 88999999999999999999988
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.92 E-value=4.2e-06 Score=67.02 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~G 103 (229)
+++|+|+|||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 194
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.92 E-value=8.4e-06 Score=62.66 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998654
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.91 E-value=6.6e-06 Score=75.36 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=23.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++| +.|+||||+|||||+|+|++..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 5667 8899999999999999999986
No 196
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.89 E-value=5.6e-06 Score=66.08 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+|+|||||||++++|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 689999999999999999999 5
No 197
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.89 E-value=1.7e-05 Score=69.78 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=21.5
Q ss_pred ccCCeE-EEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHI-VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~Gei-igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.|-. ++|+|++|||||||++.|+|..
T Consensus 175 ~~~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 175 KRNNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp ----CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 344555 8999999999999999999875
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.88 E-value=6.2e-06 Score=72.14 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=28.5
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
..+.+++|+|++|||||||++.|+|.+ .++.|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~---~~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML---TERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH---HHTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh---hhcCCe
Confidence 348899999999999999999999987 566555
No 199
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.87 E-value=7.8e-06 Score=75.05 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
+.++.-+.|+|.+||||||+++.|..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 67788999999999999999999875
No 200
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.85 E-value=7.4e-06 Score=70.91 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=30.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
+++|++++|+|+||+||||++..|++.+ .+..|+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l---~~~g~k 135 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYY---AELGYK 135 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHH---HHTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCe
Confidence 6789999999999999999999999998 555554
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.84 E-value=2.8e-05 Score=67.76 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=61.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHH-hcCC
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA 156 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~g~ 156 (229)
+.+|+++.|.|++|+|||||+.-++.... . .| ....++... .+..+....... ..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a---~-~g----------~~Vl~fSlE--------ms~~ql~~Rlls~~~~v 100 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSAL---N-DD----------RGVAVFSLE--------MSAEQLALRALSDLTSI 100 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHH---H-TT----------CEEEEEESS--------SCHHHHHHHHHHHHHCC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H-cC----------CeEEEEeCC--------CCHHHHHHHHHHHhhCC
Confidence 88999999999999999999999988761 1 11 112222221 232222211111 1111
Q ss_pred CCCccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCC
Q 026996 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD 214 (229)
+...+. -+.||.++.+|+..|...+.+++++|.|+|...++
T Consensus 101 ----~~~~l~-------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 101 ----NMHDLE-------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----CHHHHH-------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----CHHHHh-------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 111111 13688999999998888888889999998876554
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.82 E-value=9.4e-06 Score=65.10 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+...+|.+++|+||+||||||+.+.|+..+
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 346789999999999999999999999876
No 203
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.81 E-value=2.6e-05 Score=75.09 Aligned_cols=44 Identities=9% Similarity=-0.077 Sum_probs=35.2
Q ss_pred CCCCCCCccccchhhhhhhhhcCCcEEEEcCCcC-CCChhhHHHH
Q 026996 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDV 221 (229)
Q Consensus 178 ~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~-~LD~~~~~~~ 221 (229)
..+...+.|+.+|..++..++.+++++|+||+.. .+|......+
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHH
Confidence 4455678999999999988889999999999996 8886544333
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.79 E-value=1.8e-05 Score=62.36 Aligned_cols=28 Identities=36% Similarity=0.619 Sum_probs=26.3
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+|.+++|+|++||||||+++.|+..+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999987
No 205
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.75 E-value=1.2e-05 Score=62.53 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 206
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.75 E-value=1.6e-05 Score=63.46 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+|+|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.75 E-value=2e-05 Score=63.55 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=26.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|.+++|+|++||||||+.+.|++.+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999999988
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.72 E-value=1.5e-05 Score=69.38 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
+.+|.+++|+|+||+|||||++.|++.+ .+..|+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~---~~~~~~ 86 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL---IREGLK 86 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH---HHTTCC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH---HhcCCe
Confidence 6789999999999999999999999988 555444
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.72 E-value=2.1e-05 Score=61.63 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=23.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999755
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.71 E-value=2.3e-05 Score=64.24 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=28.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
-.+|.+++|+|++||||||+.++|++.++-..++.|.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~ 49 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 49 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence 5678999999999999999999999865321344454
No 211
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.70 E-value=9.4e-06 Score=75.08 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=36.9
Q ss_pred chhhhhhhhhcCCcccc------cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 62 KTSLKVLCSQRREIPVV------EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 62 ~~~~~~l~~~~~~~~~i------~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
...++++.+.|++...+ -+|+.++|+||||+|||||+|+|++.+ .+..|.+
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i 139 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRI 139 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEE
Confidence 34455566666443221 169999999999999999999999998 5555543
No 212
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.66 E-value=6.5e-05 Score=63.95 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++-+|||.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999999866
No 213
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.00015 Score=63.24 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.4
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...-.++|+|+||+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455689999999999999999998754
No 214
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.63 E-value=3.8e-05 Score=63.07 Aligned_cols=28 Identities=32% Similarity=0.608 Sum_probs=26.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+|.+++|.|++||||||+++.|+..+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999999999998
No 215
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.63 E-value=0.00014 Score=61.25 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++.-+.|.||+|+|||||++.|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356778999999999999999999976
No 216
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.61 E-value=4.7e-05 Score=61.35 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~~ 106 (229)
.+.+|+|||||||||++.+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4889999999999999999986663
No 217
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.60 E-value=2.6e-05 Score=59.92 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.60 E-value=6.7e-05 Score=67.37 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=34.3
Q ss_pred hhhhhhhcCCc---ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 65 LKVLCSQRREI---PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 65 ~~~l~~~~~~~---~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.+++.|++. ..+.++++++++|+|||||||++..|++.+
T Consensus 79 ~~~L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 79 YEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp HHHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688888764 123389999999999999999999999999
No 219
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.57 E-value=4.3e-05 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999886
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.52 E-value=5.4e-05 Score=64.77 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=34.1
Q ss_pred hhhhhhhhhcCCcc------cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 63 TSLKVLCSQRREIP------VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 63 ~~~~~l~~~~~~~~------~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+..+.+.+.|++.. ..+ |.+++++|+||+||||++..|++.+
T Consensus 75 ~~~~~l~~~~~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 75 IVYDELSNLFGGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp HHHHHHHHHTTCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566888887642 133 9999999999999999999999998
No 221
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.51 E-value=6.2e-05 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|+|++|||||||++.|.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999987
No 222
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=4.7e-05 Score=59.25 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.48 E-value=6.4e-05 Score=62.42 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=27.2
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.....+.++.|+|++||||||+.+.|+..+
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 346788999999999999999999999987
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.46 E-value=0.00032 Score=60.22 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|+++.|.|++|+|||||+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998888654
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.46 E-value=5e-05 Score=66.67 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=26.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|+++.|.||||||||||+..++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999987
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.45 E-value=8.6e-05 Score=59.83 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
.+-+|+|.|++||||||++++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 227
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.45 E-value=4.5e-05 Score=65.20 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999864
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=8e-05 Score=58.63 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
..+|.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999999987
No 229
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.43 E-value=8.9e-05 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999976
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.43 E-value=0.00041 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...+.|.||+|+||||++++|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4678999999999999999999988
No 231
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.42 E-value=0.0001 Score=57.64 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999866
No 232
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.42 E-value=8.1e-05 Score=57.88 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.42 E-value=9e-05 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999876
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.40 E-value=0.00011 Score=57.65 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+.+|.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998866
No 235
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.39 E-value=0.0001 Score=61.32 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999877
No 236
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.39 E-value=5.8e-05 Score=58.98 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 237
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.39 E-value=0.0001 Score=60.96 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999776
No 238
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00013 Score=61.92 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=27.9
Q ss_pred cCCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 72 RREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 72 ~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++......+.++.|.|++||||||+.+.|+..+
T Consensus 24 l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 24 IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred hccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444445678899999999999999999998765
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.36 E-value=9.9e-05 Score=56.45 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 026996 83 IVGLAGPPGAGKSTLAAEV 101 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L 101 (229)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 240
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.35 E-value=8.3e-05 Score=66.13 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+..+..++|+|+||+|||||++.|+|.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 677889999999999999999999987
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=9.4e-05 Score=63.85 Aligned_cols=28 Identities=32% Similarity=0.673 Sum_probs=25.4
Q ss_pred ccCCeE--EEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHI--VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~Gei--igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.|++ +.|.||+|+||||+++++++.+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 566777 8999999999999999999987
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.33 E-value=5.5e-05 Score=60.45 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 243
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.33 E-value=4.5e-05 Score=69.96 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=27.7
Q ss_pred hcCCc-ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 71 QRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 71 ~~~~~-~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.|.+. ..+.+| +.+|+|+||||||||+.+|..+.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34443 336778 99999999999999999999886
No 244
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.33 E-value=0.0001 Score=65.43 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.0
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~~ 106 (229)
..+.+|+.++|+|++|+|||||++.|++..+
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3478999999999999999999999999863
No 245
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.33 E-value=0.00013 Score=57.59 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+..+|+|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999874
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.31 E-value=5.3e-05 Score=66.49 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=27.9
Q ss_pred hhhhhhhhhcCCcccccCC-eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 63 TSLKVLCSQRREIPVVEAR-HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 63 ~~~~~l~~~~~~~~~i~~G-eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+.++.+.|+.+.+.+.- -.++|+|++|+|||||++.|.+..
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4445555555554333222 246999999999999999998753
No 247
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.00018 Score=57.08 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.+|+|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999877
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.29 E-value=0.00016 Score=56.40 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...+.+|.|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467789999999999999999999765
No 249
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.29 E-value=0.00015 Score=57.35 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.+|+|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999765
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.29 E-value=0.00017 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999999876
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.28 E-value=0.00017 Score=56.63 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++.+|+|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999766
No 252
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.28 E-value=0.00016 Score=57.29 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999976
No 253
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00019 Score=56.06 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+|+|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.26 E-value=0.00016 Score=55.97 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHH
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~G 103 (229)
.+|.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.25 E-value=0.00019 Score=57.14 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|.+|+|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 256
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.25 E-value=0.0002 Score=67.67 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=29.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~ 115 (229)
++++..++|+|+||+|||||++.|++.... .+..|++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V 42 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV 42 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee
Confidence 678999999999999999999999987621 1355654
No 257
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.|+|+|++|+|||||++.|+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999999975
No 258
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.22 E-value=0.00022 Score=56.07 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|+|++|||||||+..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999999887
No 259
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00082 Score=56.03 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=24.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+..+.-+.|.||+|+|||||++.|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556678999999999999999999887
No 260
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.21 E-value=0.00022 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++|.+|+|.|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999765
No 261
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.20 E-value=0.00014 Score=60.85 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.00018 Score=57.42 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhh
Q 026996 84 VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 84 igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998654
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0032 Score=56.68 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999887
No 264
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.00023 Score=58.72 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHhh
Q 026996 84 VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 84 igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.|.||+|+|||||++.|++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 265
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.15 E-value=0.00027 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.15 E-value=0.00026 Score=55.26 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.|.|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 267
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.14 E-value=0.00018 Score=64.51 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 488999999999999999999975
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00031 Score=56.60 Aligned_cols=26 Identities=42% Similarity=0.624 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|-+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999876
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.13 E-value=0.0002 Score=56.34 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=24.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+..+.+|+|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999999876
No 270
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.0002 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+|.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998765
No 271
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.06 E-value=0.00053 Score=59.71 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478999999999999999999877
No 272
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.05 E-value=0.00044 Score=54.84 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+-+|+|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999866
No 273
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00038 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998766
No 274
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.03 E-value=0.0003 Score=67.99 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=27.1
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.+|+.+.|+||||||||||+++|++.+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 47889999999999999999999999986
No 275
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00039 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..-.++|+|+.|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999864
No 276
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.03 E-value=0.0004 Score=59.01 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=25.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.++..+.|.||+|+|||||++.|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5678889999999999999999999976
No 277
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.02 E-value=0.00043 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999866
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.01 E-value=0.00036 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=22.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++.+|+|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999765
No 279
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.01 E-value=0.0004 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|+|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.01 E-value=0.00045 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...+|+|.|+.||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 281
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.00 E-value=0.00039 Score=56.11 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.+|.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999876
No 282
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.99 E-value=0.00047 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+|+|.|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 283
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.99 E-value=0.00051 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
No 284
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.98 E-value=0.00041 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.98 E-value=0.00053 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 286
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.96 E-value=0.00049 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998853
No 287
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.00033 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+..|+.+++.|++||||||++.++...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 668999999999999999998877643
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.96 E-value=0.00046 Score=55.32 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 289
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.95 E-value=0.00035 Score=58.86 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|++|+|||||++.|+|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999985
No 290
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.94 E-value=0.00055 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
No 291
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.93 E-value=0.00049 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 292
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.92 E-value=0.00058 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 293
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.91 E-value=0.00058 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998753
No 294
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.91 E-value=0.0004 Score=60.87 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHH-hh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVR-RI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~G-l~ 105 (229)
.+.+|+|+|||||||++..|.= ++
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999985 44
No 295
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.90 E-value=0.00072 Score=55.70 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.2
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++-+|+|.|+.||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998765
No 296
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.90 E-value=0.00067 Score=58.42 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999987
No 297
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.89 E-value=0.00063 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998864
No 298
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.89 E-value=0.00063 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 67999999999999999999753
No 299
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.89 E-value=0.00054 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999999974
No 300
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.87 E-value=0.00065 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998753
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.87 E-value=0.00065 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.+|.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999864
No 302
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.87 E-value=0.00066 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 303
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.86 E-value=0.00059 Score=54.50 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..++||+|+.||||||+.+.|+..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999875
No 304
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.86 E-value=0.00065 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.-.++|+|+.|+|||||++.+.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456688999999999999999998753
No 305
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.86 E-value=0.00068 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00057 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 307
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.84 E-value=0.00052 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 308
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.84 E-value=0.00071 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.84 E-value=0.00064 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999885
No 310
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.84 E-value=0.00064 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
No 311
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.00076 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 312
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.82 E-value=0.0005 Score=59.90 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.|+|+|++|||||||++.|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8899999999999999999994
No 313
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.82 E-value=0.00074 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 67999999999999999999865
No 314
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.81 E-value=0.00079 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.80 E-value=0.00058 Score=51.80 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999997643
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.80 E-value=0.00079 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999753
No 317
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.80 E-value=0.00079 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 318
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.79 E-value=0.00081 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999999863
No 319
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.79 E-value=0.00091 Score=58.08 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=25.7
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+++|+++.|.|++|+|||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999999886
No 320
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.79 E-value=0.00072 Score=59.48 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~ 114 (229)
.+.-++|+|++|||||||++.|++.. .+..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~---~~~~~~ 65 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE---YMQGSR 65 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---HTTTCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH---HHCCCE
Confidence 45567899999999999999999887 455555
No 321
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.79 E-value=0.00039 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999865
No 322
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.78 E-value=0.00082 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
No 323
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.78 E-value=0.0004 Score=52.54 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 57999999999999999998643
No 324
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.00082 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|-+|.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999876
No 325
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.77 E-value=0.00066 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.|+|+|.+|+|||||++.|.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999864
No 326
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.76 E-value=0.0009 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 327
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.76 E-value=0.001 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999876
No 328
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.76 E-value=0.00084 Score=58.99 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
|..++|+|.+|+|||||++.|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999983
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.75 E-value=0.00059 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998753
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.75 E-value=0.0006 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
--.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 331
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.75 E-value=0.00083 Score=56.65 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
...+|+|.|+.||||||+.+.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 332
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.75 E-value=0.00091 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.|+|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 368999999999999999999753
No 333
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.74 E-value=0.0011 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 334
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.74 E-value=0.00091 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.|+++|+.|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999753
No 335
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.74 E-value=0.00094 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999877664
No 336
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.73 E-value=0.00095 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999999854
No 337
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.73 E-value=0.0015 Score=56.53 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999876
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00097 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 339
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.72 E-value=0.0004 Score=55.00 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 026996 83 IVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~G 103 (229)
.++|+|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999986
No 340
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.00056 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
No 341
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.71 E-value=0.0009 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999875
No 342
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.71 E-value=0.00095 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 343
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.71 E-value=0.0013 Score=53.59 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=25.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+..+|.|+||.||||+|..+.|+..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6677899999999999999999999877
No 344
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.70 E-value=0.0016 Score=56.63 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++.++.|+||.|||||||...|+..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356689999999999999999999766
No 345
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.69 E-value=0.0011 Score=52.32 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=22.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
....-.|+|+|+.|+|||||++.+.+..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3445578999999999999999998753
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.69 E-value=0.00092 Score=51.09 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 347
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.68 E-value=0.0016 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999765
No 348
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.68 E-value=0.00067 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 349
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.68 E-value=0.00098 Score=53.41 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999865
No 350
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.68 E-value=0.00088 Score=58.95 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 351
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.68 E-value=0.0011 Score=50.73 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 352
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.67 E-value=0.0011 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998853
No 353
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.66 E-value=0.00077 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|..|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.66 E-value=0.0014 Score=53.36 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+.+|.|+|+.||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999866
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.66 E-value=0.0011 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36799999999999999999875
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.66 E-value=0.0011 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367999999999999999999864
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999853
No 358
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.65 E-value=0.001 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 359
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.65 E-value=0.0014 Score=53.12 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|.+|.|-|+.||||||+++.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.65 E-value=0.001 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998853
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.|+|+|+.|+|||||++.+.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 362
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.64 E-value=0.00089 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999853
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.63 E-value=0.0012 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
No 364
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.62 E-value=0.0012 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 365
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.62 E-value=0.0012 Score=51.87 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|.+|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999853
No 366
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.61 E-value=0.0015 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999877
No 367
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0012 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0012 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999884
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.0012 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
--+++|+|+.|+|||||++.|++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999875
No 370
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.59 E-value=0.0012 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34578999999999999999999854
No 371
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.58 E-value=0.0012 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6799999999999999999864
No 372
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.58 E-value=0.00097 Score=55.02 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.|+|+|+.|+|||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 373
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.58 E-value=0.0014 Score=54.04 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|.+|.|.|++||||||+++.|+..+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 374
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0012 Score=51.44 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 375
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.58 E-value=0.0011 Score=55.22 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 376
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.57 E-value=0.0029 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999876
No 377
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.57 E-value=0.0014 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 378
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.56 E-value=0.0015 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 379
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.56 E-value=0.0012 Score=54.12 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+|.+|.|.|+.||||||+++.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999877
No 380
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.55 E-value=0.0013 Score=55.28 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.+|.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 381
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.55 E-value=0.0015 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999853
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.55 E-value=0.0015 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 383
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.54 E-value=0.001 Score=60.36 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.8
Q ss_pred ccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 76 ~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+-+|++++|+|++|+|||||++.|+...
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 346789999999999999999999998876
No 384
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 385
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.54 E-value=0.00096 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
++.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456889999999999999999874
No 386
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.53 E-value=0.0015 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4478999999999999999998753
No 387
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 388
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.-.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999885
No 389
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.52 E-value=0.0012 Score=56.37 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+|..|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67999999999999999999853
No 390
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.50 E-value=0.0022 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999876
No 391
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.50 E-value=0.0017 Score=51.08 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.-.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3478999999999999999998753
No 392
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.49 E-value=0.0018 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.+|.|-|++||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999877
No 393
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.49 E-value=0.0012 Score=55.38 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.48 E-value=0.0013 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 67999999999999999998753
No 395
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.48 E-value=0.0015 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
No 396
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0017 Score=53.08 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.+|+|.|..||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999876
No 397
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.47 E-value=0.00078 Score=53.18 Aligned_cols=24 Identities=42% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|++|+|||||++.++|..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999997643
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.47 E-value=0.0012 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.9
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
++.-.++|+|+.|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999999864
No 399
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.47 E-value=0.0015 Score=51.39 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 400
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.45 E-value=0.0015 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.|.||.|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999877
No 401
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.44 E-value=0.0016 Score=51.80 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 402
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.44 E-value=0.0024 Score=52.27 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|.+|.|.|+.||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999877
No 403
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.44 E-value=0.0016 Score=55.89 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=25.8
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+++.|.|++|+|||||+..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 7899999999999999999999998764
No 404
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.44 E-value=0.0019 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36899999999999999998874
No 405
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0017 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.|+|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 406
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.43 E-value=0.0019 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0014 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999853
No 408
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0022 Score=51.75 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.|+||.||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 409
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.40 E-value=0.0034 Score=53.13 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=28.9
Q ss_pred hhhhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 68 LCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 68 l~~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+.|-....++....+.|.||.|+|||+|.+.|+..+
T Consensus 23 ~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 23 ITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp HHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555444445555667788999999999999999987
No 410
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.40 E-value=0.0023 Score=52.13 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+|.+|.|-|+.||||||+++.|+..+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999999988
No 411
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.39 E-value=0.0007 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.-.++|+|+.|+|||||++.|.|.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347899999999999999999875
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.38 E-value=0.0017 Score=57.89 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...+|.|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998654
No 413
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.0019 Score=55.08 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+.|.||+|+|||||++.|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34578899999999999999999977
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.37 E-value=0.0014 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999874
No 415
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.37 E-value=0.0015 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 67999999999999999999864
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.37 E-value=0.0015 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 417
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.36 E-value=0.0011 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 418
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.36 E-value=0.002 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999999853
No 419
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.33 E-value=0.0014 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.-.|+|+|+.|+|||||++.+.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999998743
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.32 E-value=0.0018 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.|+|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 421
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0022 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999975
No 422
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.32 E-value=0.001 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998754
No 423
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.31 E-value=0.0016 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..-.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998753
No 424
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.31 E-value=0.0014 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 425
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.31 E-value=0.0042 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|+||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999876
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.31 E-value=0.0014 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 427
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.30 E-value=0.0022 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
--+++|+|..|+|||||++.++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.29 E-value=0.0019 Score=50.58 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
..-.++|+|+.|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.28 E-value=0.0013 Score=54.55 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..++.+|+|.|+.||||||+++.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5678899999999999999999998765
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.27 E-value=0.0018 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|..|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999888754
No 431
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.24 E-value=0.002 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|+.|+|||||++.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 432
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.24 E-value=0.0019 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 433
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.23 E-value=0.0027 Score=50.17 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 36899999999999999999875
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.22 E-value=0.0027 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999876
No 435
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.22 E-value=0.0025 Score=57.13 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.-+.|.||+|+|||||++.|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999976
No 436
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.21 E-value=0.0037 Score=50.29 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
|.+|+|=|..||||||+++.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999877
No 437
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.20 E-value=0.0028 Score=56.85 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+++|+|++|+||||++..|++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.18 E-value=0.0028 Score=50.14 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 439
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0031 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHhh
Q 026996 84 VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 84 igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.|.||+|+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999986
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0032 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.17 E-value=0.003 Score=50.97 Aligned_cols=28 Identities=36% Similarity=0.270 Sum_probs=23.6
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.-.|..+.|+||+|+|||||...|+...
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467889999999999999999887643
No 442
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.16 E-value=0.0021 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 443
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.16 E-value=0.0015 Score=63.13 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=26.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.++..+.|.||+|+|||||.++|++.+
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 5678889999999999999999999987
No 444
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0025 Score=51.39 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 445
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.15 E-value=0.0033 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.-.++|+|+.|+|||||++.+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
No 446
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.12 E-value=0.0025 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.++++|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999753
No 447
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.11 E-value=0.0032 Score=53.81 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=25.0
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+++|+++.|.|++|+|||||+..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999988864
No 448
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.10 E-value=0.0026 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..++++|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 588999999999999999999865
No 449
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.09 E-value=0.0047 Score=50.47 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
....-+.|.||.|+|||||++.|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444557899999999999999999977
No 450
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0034 Score=49.62 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 451
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.07 E-value=0.0013 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999876
No 452
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.04 E-value=0.0045 Score=50.90 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-.+||+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 453
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.0047 Score=53.12 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456688999999999999999999876
No 454
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.01 E-value=0.0051 Score=53.46 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...-+++|+|+.|+|||||++.|++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 455
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.99 E-value=0.026 Score=50.70 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.4
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|+++.|.|++|+|||||+--++...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 7899999999999999999988887665
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.99 E-value=0.0012 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.96 E-value=0.0043 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999865
No 458
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.94 E-value=0.0021 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|+|.+|+|||||++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998853
No 459
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.91 E-value=0.0075 Score=55.25 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=32.0
Q ss_pred hhhhhhhcCCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 65 LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 65 ~~~l~~~~~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.+.+.|..+ .+.|.+|.|+|.+||||||+-+.|+..+
T Consensus 381 ~~vLr~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 381 VKILRESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp HHHHHHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhcccc--cccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34455666544 4778899999999999999999999998
No 460
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.0054 Score=49.55 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVV 102 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~ 102 (229)
+++|+++.|.|+.|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986554
No 461
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.87 E-value=0.0023 Score=57.92 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=25.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
++.|-.++|+|+.|+|||||++.|++..
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 5667789999999999999999999974
No 462
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.79 E-value=0.0033 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345789999999999999999864
No 463
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.76 E-value=0.0067 Score=53.03 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=25.5
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998888765
No 464
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.75 E-value=0.0051 Score=54.60 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCcccccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 73 ~~~~~i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+....+.+|++.+|+|+.|+|||||+..|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 333458899999999999999999999988865
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.75 E-value=0.0065 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhh
Q 026996 84 VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 84 igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.|.||.|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998865
No 466
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.74 E-value=0.018 Score=47.14 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHI-VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~Gei-igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.. +.+.|+.|+||||++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3443 7789999999999966665554
No 467
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.72 E-value=0.0041 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHH-HHHhh
Q 026996 82 HIVGLAGPPGAGKSTLAAE-VVRRI 105 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~-L~Gl~ 105 (229)
-.++|+|+.|+|||||++. +.|..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3689999999999999998 66654
No 468
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.71 E-value=0.003 Score=52.12 Aligned_cols=22 Identities=50% Similarity=0.761 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhh
Q 026996 84 VGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 84 igLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.|.||+|+|||||++.|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999999976
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.70 E-value=0.0077 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLA-AEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLl-r~L~Gl 104 (229)
+|.++.+.|+.|+||||++ +++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555443
No 470
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.66 E-value=0.0071 Score=45.41 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=22.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+.-+.|.|+.|+|||++.+.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345567899999999999999998764
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.64 E-value=0.008 Score=50.44 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+.-+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999877
No 472
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.60 E-value=0.005 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|.+++|||||++.|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 473
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.55 E-value=0.007 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
..+-.++|+|.+|+|||||++.|.|..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 345578999999999999999999854
No 474
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.54 E-value=0.0065 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
+-.++|+|+.|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998775
No 475
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.53 E-value=0.0088 Score=53.57 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=26.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+|+++.|.|++|+|||||+..++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999988865
No 476
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.49 E-value=0.0023 Score=50.36 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999888754
No 477
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.44 E-value=0.0059 Score=54.94 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-+.|.||+|+|||||++.|+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999999999987
No 478
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.44 E-value=0.011 Score=55.00 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.2
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
-++|.+|.|.|.+||||||+.+.|+..+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999876
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.41 E-value=0.0095 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.9
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHH
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
.-.|.-+.|.|++|+|||||...+..
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44677889999999999999887765
No 480
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.41 E-value=0.028 Score=54.45 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCcEEEEeecCCccccCccCChhhhHHHHHHhcCCCC
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 158 (229)
.+-..+.|.||+|+|||++.+.|+..+ ......++..+.-..... ....+.+..
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~----------------~~~~~~~i~i~~~~~~~~-~~~s~l~g~--------- 639 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATL----------------FDTEEAMIRIDMTEYMEK-HAVSRLIGA--------- 639 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH----------------HSSGGGEEEECTTTCCSS-GGGGGC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh----------------cCCCCcEEEEechhccch-hHHHHHcCC---------
Q ss_pred CccHHHHHHHHHhhhhcCCCCCCCCCccccchhhhhhhhhcCCcEEEEcCCcCCCChhhHHHHHHHHHh
Q 026996 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~k~Rl~~a~al~~~~~illlDe~~~~LD~~~~~~~~~ll~~ 227 (229)
.+.|.|.++.+......-.....++++||. --+++..+..+..++++
T Consensus 640 ---------------------~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 640 ---------------------PPGYVGYEEGGQLTEAVRRRPYSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp --------------------------------CHHHHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred ---------------------CCCCcCccccchHHHHHHhCCCeEEEEecc-cccCHHHHHHHHHHhcc
No 481
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.40 E-value=0.0099 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~G 103 (229)
.|.-+.|.|++|+||||+...|.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 588899999999999999999887
No 482
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.39 E-value=0.011 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|.+|.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 483
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.38 E-value=0.0048 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.|+|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 484
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.38 E-value=0.0031 Score=57.25 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=23.4
Q ss_pred cccCCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 77 ~i~~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.++.|-.++|+|+.|+|||||++.|++.
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566778999999999999999999886
No 485
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.37 E-value=0.011 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.-+.|.||.|+||||+++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467799999999999999999987
No 486
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.36 E-value=0.011 Score=50.52 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 445667899999999999999999875
No 487
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.35 E-value=0.011 Score=54.05 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.8
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+|+|+|++|+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999999766
No 488
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.34 E-value=0.0099 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+.-+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45567899999999999999999876
No 489
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.31 E-value=0.0097 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl 104 (229)
.+..++++|..|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999997
No 490
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.27 E-value=0.01 Score=49.09 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...-+.|.||.|+|||||++.|+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44567899999999999999999876
No 491
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.22 E-value=0.0087 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 026996 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (229)
Q Consensus 82 eiigLiG~NGsGKSTLlr~L~Gl 104 (229)
-.++++|+.|+|||||++.|+|.
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47899999999999999999984
No 492
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.20 E-value=0.012 Score=47.70 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.1
Q ss_pred ccCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 78 i~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+++.-.+.|.||.|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444568899999999999999999987
No 493
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.20 E-value=0.014 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
...+|.++|.+||||||+.+.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998764
No 494
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.18 E-value=0.014 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999999876
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.17 E-value=0.013 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 80 ~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|..+.|.||.|+|||||++.++..+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999988
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.12 E-value=0.015 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.6
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
....-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678899999999999999999876
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.10 E-value=0.016 Score=49.39 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 81 GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999999876
No 498
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.08 E-value=0.0058 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999853
No 499
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.08 E-value=0.016 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 026996 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 83 iigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+|+|=|..||||||.++.|+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999999877
No 500
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.03 E-value=0.017 Score=53.31 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=24.6
Q ss_pred cCCeEEEEECCCCCcHHHHHHHHHHhh
Q 026996 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (229)
Q Consensus 79 ~~GeiigLiG~NGsGKSTLlr~L~Gl~ 105 (229)
+.+.++.|.|..||||||+.+.|+..+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999866
Done!