BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026997
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162
+V +D + L AG+KLVV+DF++ CG CK + PK+ +L++ DV FL+V+ +E +
Sbjct: 4 QVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECE 63
Query: 163 SMCYSLNVHVLPFFRFYRGAH 183
+ + +P F F +
Sbjct: 64 DIAQDNQIACMPTFLFMKNGQ 84
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
MR +A+A DL + + +L+VVDFF+ CG C+ + PK+ LA+ P+V+F +V+ ++
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
++ +V +P F F +
Sbjct: 61 NEEAAAKYSVTAMPTFVFIK 80
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
+S +GDKLVVVDFF+ CG CK + P I + AE D F +++ +E + V
Sbjct: 19 DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 78
Query: 172 VLPFFRFYRG 181
+P FY+G
Sbjct: 79 SMPTLIFYKG 88
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
+S +GDKLVVVDFF+ CG CK + P I + AE D F +++ +E + V
Sbjct: 12 DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 172 VLPFFRFYRG 181
+P FY+G
Sbjct: 72 SMPTLIFYKG 81
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V P F+F++
Sbjct: 62 AQDVASEAEVKATPTFQFFK 81
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 175
AGDK VV+D F+ CG CKA+ PK +LAE DV FL+++ +E+K++ L + V+P
Sbjct: 23 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 176 FRFYR 180
F+ +
Sbjct: 83 FKILK 87
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 175
AGDK VV+D F+ CG CKA+ PK +LAE DV FL+++ +E+K++ L + V+P
Sbjct: 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 176 FRFYR 180
F+ +
Sbjct: 95 FKILK 99
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASEXEVKCMPTFQFFK 81
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASECEVKCMPTFQFFK 81
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASECEVKSMPTFQFFK 81
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASESEVKSMPTFQFFK 81
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVND 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASECEVKCMPTFQFFK 81
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V P F+F++
Sbjct: 62 CQDVASECEVKCTPTFQFFK 81
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
+S +GDKLVVVDFF+ CG K + P I + AE D F +++ +E + V
Sbjct: 20 DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 79
Query: 172 VLPFFRFYRG 181
+P FY+G
Sbjct: 80 SMPTLIFYKG 89
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
+S +GDKLVVVDFF+ CG K + P I + AE D F +++ +E + V
Sbjct: 12 DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 172 VLPFFRFYRG 181
+P FY+G
Sbjct: 72 SMPTLIFYKG 81
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V P F+F++
Sbjct: 62 AQDVASEAEVKATPTFQFFK 81
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 SQDVASESEVKSMPTFQFFK 81
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
KL+VVDF + C CK + P +LA+ P+V FL+V+ +E K++ NV +P F F
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFL 86
Query: 180 RGAHGRVCIEEVG 192
+ G++ + VG
Sbjct: 87 K--DGKLVDKTVG 97
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 175
AGDK VV+D F+ CG KA+ PK +LAE DV FL+++ +E+K++ L + V+P
Sbjct: 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 81
Query: 176 FRFYR 180
F+ +
Sbjct: 82 FKILK 86
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
+++++ S E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ +
Sbjct: 12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 71
Query: 160 EHKSMCYSLNVHVLPFFRFYR 180
+ + + V +P F+F++
Sbjct: 72 DCQDVASECEVKSMPTFQFFK 92
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCIEEVG 192
+ + + +P ++ +G V +VG
Sbjct: 62 AQDVAPKYGIRGIPTLLLFK--NGEVAATKVG 91
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASECEVKRMPTFQFFK 81
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH 161
+V DL L A KLVV+DFF+ CG CK + PK+ +L+ D V L+V+ +E
Sbjct: 9 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 68
Query: 162 KSMCYSLNVHVLPFFRFYRG 181
+ + N+ +P F F +
Sbjct: 69 EDIAMEYNISSMPTFVFLKN 88
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH 161
+V DL L A KLVV+DFF+ CG CK + PK+ +L+ D V L+V+ +E
Sbjct: 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 63
Query: 162 KSMCYSLNVHVLPFFRFYRG 181
+ + N+ +P F F +
Sbjct: 64 EDIAMEYNISSMPTFVFLKN 83
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
LVVVDF + CG C+ + P LA+ P+V FL+V+ +E KS+ + +P F F +
Sbjct: 40 LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 181 GAHGRVCIEEVG 192
G++ + VG
Sbjct: 100 --EGKILDKVVG 109
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 XQDVASEXEVKCMPTFQFFK 81
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
+ KLVV+DF + CG C+ + P LA+ P+ FL+V+ +E K + +V +P
Sbjct: 31 NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 90
Query: 176 FRFYR 180
F F +
Sbjct: 91 FLFMK 95
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
KLV++DF + CG C+ + P + A+ P FL+V+ +E K + + NV +P F F
Sbjct: 29 KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFI 88
Query: 180 R 180
+
Sbjct: 89 K 89
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++++ S E+L AGDKLVVVDF + G K + P L+E +V FL+V+ ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + V +P F+F++
Sbjct: 62 CQDVASECEVKCMPTFQFFK 81
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++ V S D L AG +L VV F GCG C + P ++ P FL+V+ +
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
+ + N+ P F+F+R
Sbjct: 63 CQGTAATNNISATPTFQFFR 82
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
A DKLVVVDF++ CG CK + P I + +E P F +++ +E + V +P
Sbjct: 16 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 75
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G+ + VG
Sbjct: 76 LLFK--NGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
A DKLVVVDF++ CG CK + P I + +E P F +++ +E + V +P
Sbjct: 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G+ + VG
Sbjct: 82 LLFK--NGKEVAKVVG 95
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
+ KLVV+DF + CG + + P LA+ P+ FL+V+ +E K + +V +P
Sbjct: 34 NTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 93
Query: 176 FRFYR 180
F F +
Sbjct: 94 FLFMK 98
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 113 SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172
+L DKLV+ DF++ CG CK + P + +L + PDV+F++ + +E + V
Sbjct: 25 NLIKQNDKLVI-DFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA 83
Query: 173 LPFFRFYRGAHGRVCIEEVG 192
+P F G G++ + +G
Sbjct: 84 MPTFVL--GKDGQLIGKIIG 101
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
K+V++DF + CG C+ + P + A+ P FL+V+ +E K + NV +P F F
Sbjct: 37 KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFI 96
Query: 180 R 180
+
Sbjct: 97 K 97
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLP 174
GDK+VV+DF++ CG CK + P ++++ V F +V+ +E + + + +P
Sbjct: 31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90
Query: 175 FFRFYRGAH 183
F F++
Sbjct: 91 TFVFFKNGQ 99
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 96 GLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQ 155
G + E+ DL L +KLVVVDFF+ CG CK + P +L+E D F++
Sbjct: 1 GSMSKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVK 59
Query: 156 VNYEEHKSMCYSLNVHVLPFF 176
V+ ++ + N+ +P F
Sbjct: 60 VDVDKLEETARKYNISAMPTF 80
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
+K+VVVDF++ C C L P I +LA P V F ++N EE + + + LP F
Sbjct: 23 NKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMF 82
Query: 179 YRGAH 183
++
Sbjct: 83 FKNGE 87
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156
+ + E+ DL L +KLVVVDFF+ CG CK + P +L+E D F++V
Sbjct: 11 IMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVKV 69
Query: 157 NYEEHKSMCYSLNVHVLPFF 176
+ ++ + N+ +P F
Sbjct: 70 DVDKLEETARKYNISAMPTF 89
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
A DKLVVVDF++ CG K + P I + +E P F +++ +E + V +P
Sbjct: 22 AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G+ + VG
Sbjct: 82 LLFK--NGKEVAKVVG 95
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 107 AQDLVESLWHA----GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
QD+ +S W + V+VDF++P CG CK + P I +LA E + + ++N +E
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 162 KSMCYSLNVHVLPFFRFYRGAHGRVCI 188
+ N+ +P F++ + I
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGERKESI 88
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF 175
AG L +VDFF+P CG C+ + P + +LA + ++ ++VN +EH + V +P
Sbjct: 48 AGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPT 107
Query: 176 FRFYR---------GAHGRVCIEE 190
+R GA R +EE
Sbjct: 108 LVLFRRGAPVATWVGASPRRVLEE 131
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 108 QDLVESLWHA----GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHK 162
QD+ +S W + V+VDF++P CG CK + P I +LA E + + ++N +E
Sbjct: 2 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 163 SMCYSLNVHVLPFFRFYRGAHGRVCI 188
+ N+ +P F++ + I
Sbjct: 62 GIATQYNIRSIPTVLFFKNGERKESI 87
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
M ++ ++Q +S+ + ++LV+VDFF+ CG CK + P + ++ + F++V+ +E
Sbjct: 9 MVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 161 HKSMCYSLNVHVLPFFRFYRG 181
+ N+ +P F+ Y+
Sbjct: 68 VSEVTEKENITSMPTFKVYKN 88
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
LV+VDFF+ CG C+ L + +AE N DV F++V+ +++ + + V +P F +
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176
GDK V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 177 RFYRGAHGRVCIEEVG 192
++G GR + +G
Sbjct: 76 ILFKG--GRPVKQLIG 89
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176
GDK V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 177 RFYRGAH 183
++G
Sbjct: 76 ILFKGGE 82
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D V+DF++P CG C++ P + AE V+F++VN E ++ + +P
Sbjct: 55 DLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIX 114
Query: 178 FYR 180
YR
Sbjct: 115 LYR 117
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
LV+ +FF+P CG CK + P+ + AE + ++ Q++ E++ +C N+ P +
Sbjct: 33 LVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKI 92
Query: 179 YRGAHGRVCIEEVG 192
++ + I+ G
Sbjct: 93 FKNSDVNNSIDYEG 106
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAE 146
K V+V +++P CG CK L P +LA+
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELAD 403
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
A ++ VVDF++ C C L P I +LAE P V F ++N +E+ + V LP
Sbjct: 14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTV 73
Query: 177 RFYR 180
F++
Sbjct: 74 IFFK 77
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
K+V+ +F + CG CK + P +L+E P + FL ++ +E S + P F F
Sbjct: 47 KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 180 R 180
R
Sbjct: 107 R 107
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 107 AQDLVESLWHA----GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
QD+ +S W + V+VDF++P CG K + P I +LA E + + ++N +E
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 162 KSMCYSLNVHVLPFFRFYRGAHGRVCI 188
+ N+ +P F++ + I
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGERKESI 88
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
K VVV F+SP C CKA P + A E F ++N + V P F+F
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF 84
Query: 179 YRGAHGRVCIEEVG 192
+ HGR E+VG
Sbjct: 85 F--CHGRPVWEQVG 96
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKIC----QLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172
A K ++V+F++P CG CKAL P+ +L +++ +V+ E + V
Sbjct: 22 AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81
Query: 173 LPFFRFYR 180
P +F+R
Sbjct: 82 YPTIKFFR 89
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
DK V+VDF++ CG C+ + P + + AE ++ +++N +E+ V +P
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82
Query: 178 FYRGAHGRVCIEEVG 192
Y+G G V VG
Sbjct: 83 VYQG--GEVAKTIVG 95
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176
GD V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 177 RFYRGAHGRVCIEEVG 192
++G GR + +G
Sbjct: 76 ILFKG--GRPVKQLIG 89
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176
GD V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 177 RFYRGAH 183
++G
Sbjct: 76 ILFKGGE 82
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
+ GDK +VDF++ CG CK + P + +LA E + + +V+ E+ + + + + +P
Sbjct: 35 YEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIP 94
Query: 175 FFRF 178
F
Sbjct: 95 SILF 98
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE 159
++++A ++ + + GDK +VDF++ CG CK + P + +L+ E + +VN +
Sbjct: 33 LKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD 92
Query: 160 EHKSMCYSLNVHVLPFFRF 178
+ + + +P F
Sbjct: 93 KEPELARDFGIQSIPTIWF 111
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE 159
++++A ++ + + GDK +VDF++ CG CK + P + +L+ E + +VN +
Sbjct: 33 LKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD 92
Query: 160 EHKSMCYSLNVHVLPFFRF 178
+ + + +P F
Sbjct: 93 KEPELARDFGIQGIPTIWF 111
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 121 LVVVDFFSPGCGGCKALHPKI----CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
+++V+F++P CG CK L P+ +L++ +P + +V+ E + +V P
Sbjct: 26 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTL 85
Query: 177 RFYR 180
+ +R
Sbjct: 86 KIFR 89
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
LV+VDF++ CG CK + P + ++ E V +VN +++ + V +P
Sbjct: 22 LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV 81
Query: 180 RGAHGRVCIEEVG 192
R G+V ++VG
Sbjct: 82 R--DGKVIDKKVG 92
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 122 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
V+VDF++P CG C+ + P + ++A E ++ +++N +E ++ + +P ++
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 181 GAHGRVCIEEVG 192
G G+ C +G
Sbjct: 82 G--GKKCETIIG 91
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-NYEEHKSMCYSLNVHVLPFFRF 178
K V V+F++P CG CK L P +L E D + + + + + ++ VH P +F
Sbjct: 26 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKF 85
Query: 179 YRGAHGRVCIEEVG 192
+ + R I+ G
Sbjct: 86 FPASADRTVIDYNG 99
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-NYEEHKSMCYSLNVHVLPFFRF 178
K V V+F++P CG CK L P +L E D + + + + + ++ VH P +F
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKF 327
Query: 179 YRGAHGRVCIEEVG 192
+ + R I+ G
Sbjct: 328 FPASADRTVIDYNG 341
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
K+V+ +F + CG + + P +L+E P + FL ++ +E S + P F F
Sbjct: 47 KIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 180 R 180
R
Sbjct: 107 R 107
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D L +V+F++P CG C+ L P+ + A D V+ VN ++H+S+ V P +
Sbjct: 35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK 94
Query: 178 FY 179
+
Sbjct: 95 IF 96
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
+V+ DF++P CG CK + P + +L EM ++ ++++ +E++ V +P
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 180 RGAHGRVCIEEVG 192
+ G V VG
Sbjct: 79 K--DGEVVETSVG 89
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 60 VFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGD 119
+ ++ +A+ GS ++ I A+ +R W P + V + ++ E + A
Sbjct: 95 ILKKGQAVDYEGSRTQEEIVAK--VREVSQPDW---TPPPEVTLVLTKENFDEVVNDAD- 148
Query: 120 KLVVVDFFSPGCGGCKALHPKI----CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
+++V+F++P CG CK L P+ +L++ +P + +V+ + +V P
Sbjct: 149 -IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT 207
Query: 176 FRFYR 180
+ +R
Sbjct: 208 LKIFR 212
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 172
A V+++F++P CG CK P+ ++A + +P + +++ + +V
Sbjct: 30 ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG 89
Query: 173 LPFFRFYR 180
P + +
Sbjct: 90 YPTIKILK 97
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 123 VVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
VVDF++P CG C+ P+ LA M V+ +V+ + + C + P + Y+
Sbjct: 25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQY 84
Query: 182 AHGRVCIEE 190
+ I E
Sbjct: 85 ERAKKSIWE 93
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAE 146
DK V+VDF++P CG C+ + P I +LA+
Sbjct: 19 DKPVLVDFWAPWCGPCRMIAPIIEELAK 46
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKI-CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLP-FF 176
D ++VDF++P CG C+ + P+ A + V+ +++ + H ++ + +P F
Sbjct: 64 DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 177 RFYRG 181
F++G
Sbjct: 124 LFHKG 128
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAE 146
+K V+++F++P CG CK L PK +L E
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGE 397
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
L++V+FF+P CG K L P+ A + V +V+ + + C V P + +
Sbjct: 23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 180 R 180
R
Sbjct: 83 R 83
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
+ + F++P CG CK L P +L++ V+ +V+ +++C +V P
Sbjct: 25 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 84
Query: 177 RFYRGA 182
+RG
Sbjct: 85 LLFRGG 90
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 122 VVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
VVVDF + CG CK L P++ ++ A+ + V +V+ ++H + V +P +
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 181 GAHGRVCIEEVGLAE 195
+G V + VG+ +
Sbjct: 94 --NGDVVDKFVGIKD 106
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC 165
SA E L L+VV F++P C ++ + +LA+ P V F+++ E +
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS 84
Query: 166 YSLNVHVLPFFRFYRGAH 183
+ +P F F++ +
Sbjct: 85 EKYEISSVPTFLFFKNSQ 102
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAE 146
+K V+++F++P CG CK L PK +L E
Sbjct: 45 NKDVLIEFYAPWCGHCKNLEPKYKELGE 72
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
+ + F++P CG CK L P +L++ V+ +V+ +++C +V P
Sbjct: 18 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 77
Query: 177 RFYRGA 182
+RG
Sbjct: 78 LLFRGG 83
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLP 174
+ + + F++P CG CK L P +L++ V+ +V+ +++C +V P
Sbjct: 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 80
Query: 175 FFRFYRGA 182
+RG
Sbjct: 81 TLLLFRGG 88
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
L++V+FF+P CG CK L P+ A + V +V+ + + C V P + +
Sbjct: 23 LMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 180 R 180
R
Sbjct: 83 R 83
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC 165
SA E L L+VV F++P C ++ + +LA+ P V F+++ E +
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS 78
Query: 166 YSLNVHVLPFFRFYRGAH 183
+ +P F F++ +
Sbjct: 79 EKYEISSVPTFLFFKNSQ 96
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 94 EKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQ 152
EK + + + A D++ S +K V+VDF++ CG CK + P + ++A E D+
Sbjct: 10 EKSATIKVTDASFATDVLSS-----NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLT 64
Query: 153 FLQVNYEEHKSMCYSLNVHVLPFFRFYR---------GAHGRVCI 188
+++ + + + V +P ++ GA G+ +
Sbjct: 65 VAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAAL 109
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTL 78
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 79 LLFK--NGEVAATKVG 92
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
AGDKL+V+ F + CKAL ++ N +V FL ++ +E+ + + +P
Sbjct: 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVP 78
Query: 175 FF 176
+F
Sbjct: 79 YF 80
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
+V+ DF++P CG K + P + +L EM ++ ++++ +E++ V +P
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 180 RGAHGRVCIEEVG 192
+ G V VG
Sbjct: 79 K--DGEVVETSVG 89
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
+V+ DF++P CG K + P + +L EM ++ ++++ +E++ V +P
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 180 RGAHGRVCIEEVG 192
+ G V VG
Sbjct: 79 K--DGEVVETSVG 89
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156
K V+ F++P C C A P + Q+A NP V F+ +
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF 153
K V+++F++P CG CKAL PK +L + +F
Sbjct: 26 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEF 59
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 94 EKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQ 152
EK + + + A D++ S +K V+VDF++ CG CK + P + ++A E D+
Sbjct: 5 EKSATIKVTDASFATDVLSS-----NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLT 59
Query: 153 FLQVNYEEHKSMCYSLNVHVLPFFRFYR---------GAHGRVCI 188
+++ + + + V +P ++ GA G+ +
Sbjct: 60 VAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAAL 104
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGDVAATKVG 92
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 96 GLQPNMREVA--SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--V 151
G N+R + + ++L+E W +++F++P C C+ L P+ AE D V
Sbjct: 4 GSSGNVRVITDENWRELLEGDW-------MIEFYAPWCPACQNLQPEWESFAEWGEDLEV 56
Query: 152 QFLQVNYEEHKSMCYSLNVHVLPF--------FRFYRGAHGR 185
+V+ E + ++ LP FR Y+G +
Sbjct: 57 NIAKVDVTEQPGLSGRFIINALPTIYHCKDGEFRRYQGPRTK 98
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 122 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
+++ F C CK + P ++A +M D++F ++ E+ + LN+ LP
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLP 73
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 88
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 89 LLFK--NGEVAATKVG 102
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + +A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + P
Sbjct: 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLL 80
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 81 LFK--NGEVAATKVG 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A + + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 123 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 81
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAE-MNPDVQFLQVN--YEEHKSMCYSLNVHV 172
H + +V+F++P CG CK L + A+ ++ VQ VN ++K++C +V+
Sbjct: 32 HNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNG 91
Query: 173 LPFFRFYR 180
P +R
Sbjct: 92 FPTLMVFR 99
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 123 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 81
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVC 187
++ C
Sbjct: 80 LFKNGEVAAC 89
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG C+ + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 123 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 82
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
D L V F + CG CK + + ++A P V+F +V+ + + + V LP F
Sbjct: 37 DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFII 96
Query: 179 YR 180
R
Sbjct: 97 AR 98
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
+L V+F+SPGC C L P + A E++ ++ VN + + +C V+ P
Sbjct: 115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI 174
Query: 179 YRGAHGRV 186
+R V
Sbjct: 175 FRSGMAAV 182
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 124 VDFFSPGCGGCKALHPKICQLAE----MNPDVQF--LQVNYEEHKSMCYSLNVHVLPFFR 177
V+FF+ CG C A P LAE P + L E + ++C N+ P R
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 178 FY 179
F+
Sbjct: 95 FF 96
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 123 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 82
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG K + P + ++A E + ++N +++ + +P
Sbjct: 40 DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 99
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 100 LFK--NGEVAATKVG 112
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 61 FQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDK 120
+ E + P++ S + S R + R W G P + Q E + G
Sbjct: 618 YPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQ-GKT 676
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
VVDF++P G + P+ LA M V+ +V+ + + C + P + Y
Sbjct: 677 HWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY 736
Query: 180 RGAHGRVCIEE 190
+ + I E
Sbjct: 737 QYERAKKSIWE 747
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG K + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
D ++VDF++ C CK + P + ++A E + ++N +++ + +P
Sbjct: 19 ADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 79 LLFK--NGEVAATKVG 92
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
D ++VDF++ CG CK + P + ++A E + ++N +++ +P
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTL 78
Query: 177 RFYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 79 LLFK--NGEVAATKVG 92
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
D ++VDF++ CG CK + + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 178 FYRGAHGRVCIEEVG 192
++ +G V +VG
Sbjct: 80 LFK--NGEVAATKVG 92
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156
K V+ F++P C C+ P + Q+A +P+V F+ V
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGV 62
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
K +VVDF + CG CK + P L+ + V FL+V+ + ++ + + +P F
Sbjct: 25 KPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHV 84
Query: 179 YR 180
Y+
Sbjct: 85 YK 86
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156
K V+ F++P C C+ P + Q+A +P+V F+ V
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGV 76
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
+VV+ + G GC AL+ + LA P V+F ++ + + VLP Y+G
Sbjct: 123 IVVNIYEDGVRGCDALNSSLECLAAEYPXVKFCKIR-ASNTGAGDRFSSDVLPTLLVYKG 181
Query: 182 AH 183
Sbjct: 182 GE 183
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVNYEEHKSMCYSLNVHV 172
A V+++F++P CG CK P+ ++A + +P + +++ + +V
Sbjct: 32 ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG 91
Query: 173 LPFFRFYR 180
P + +
Sbjct: 92 YPTIKILK 99
>pdb|3H93|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Dsba
Length = 192
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQV 156
K+ VV+ F GC C A P I +E P DV F+++
Sbjct: 26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRL 63
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAE 146
K V+++F++P CG CK L P L +
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGK 52
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
+VV+ + G GC AL+ + LA P V+F ++ + + VLP Y+G
Sbjct: 136 IVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRA-SNTGAGDRFSSDVLPTLLVYKG 194
Query: 182 AH 183
Sbjct: 195 GE 196
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
+VV+ + G GC AL+ + LA P V+F ++ + + VLP Y+G
Sbjct: 136 IVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRA-SNTGAGDRFSSDVLPTLLVYKG 194
Query: 182 AH 183
Sbjct: 195 GE 196
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
+VV + G GC AL+ + LA P V+F ++ + + VLP Y+G
Sbjct: 136 IVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKA-SNTGAGDRFSSDVLPTLLVYKG 194
Query: 182 AH 183
Sbjct: 195 GE 196
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQV--NYEEHKSMCYSLNVHVLPF 175
K+ +++F+ P C GC + PKI + A N + Q L V + +S+ + + LPF
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPF 88
Query: 176 FRFY 179
Y
Sbjct: 89 TVMY 92
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 103 EVASAQDLVESLWHAG--DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
++ S QD L A K +V+ + C C+ HP++ +LAE V +NY++
Sbjct: 40 DLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQG--VVIYGINYKD 97
Query: 161 HKSMCYS-LNVHVLPFFRFYRGAHGRVCIE 189
+ LN P+ A G + ++
Sbjct: 98 DNAAAIKWLNELHNPYLLSISDADGTLGLD 127
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 105 ASAQDLVESLWHAGDKLVV-------VDFFSPGCGGCKALHPKICQLA-----EMNPDVQ 152
S+ D++E + DK V+ V+F++P CG CK L P+ A + V+
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63
Query: 153 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV 186
V+ ++ + + P + ++ V
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,031,719
Number of Sequences: 62578
Number of extensions: 219894
Number of successful extensions: 565
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 143
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)