Query 026997
Match_columns 229
No_of_seqs 287 out of 1515
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02954 DIM1 Dim1 family; Dim1 99.9 1.2E-21 2.7E-26 149.7 12.7 87 107-195 2-89 (114)
2 KOG0907 Thioredoxin [Posttrans 99.9 2.2E-21 4.8E-26 146.8 11.7 83 110-194 12-94 (106)
3 KOG0910 Thioredoxin-like prote 99.9 1.2E-21 2.6E-26 154.8 10.1 92 102-196 45-137 (150)
4 cd02985 TRX_CDSP32 TRX family, 99.9 7.5E-21 1.6E-25 142.8 12.7 88 106-195 2-92 (103)
5 PHA02278 thioredoxin-like prot 99.9 3.6E-21 7.7E-26 145.0 10.3 90 105-198 2-96 (103)
6 cd02989 Phd_like_TxnDC9 Phosdu 99.9 2.7E-20 5.8E-25 142.4 14.3 100 98-201 3-102 (113)
7 cd02986 DLP Dim1 family, Dim1- 99.8 3E-20 6.5E-25 141.4 11.2 86 107-192 2-88 (114)
8 PLN00410 U5 snRNP protein, DIM 99.8 8.4E-20 1.8E-24 144.6 11.3 92 101-193 5-98 (142)
9 cd02957 Phd_like Phosducin (Ph 99.8 1E-19 2.2E-24 138.7 11.3 96 99-198 4-100 (113)
10 cd02948 TRX_NDPK TRX domain, T 99.8 1.3E-19 2.9E-24 135.7 9.9 87 102-193 2-90 (102)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 6.1E-19 1.3E-23 131.7 11.7 92 100-194 2-94 (104)
12 cd02999 PDI_a_ERp44_like PDIa 99.8 4.3E-19 9.3E-24 132.7 10.6 84 109-195 8-92 (100)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 6.2E-19 1.3E-23 131.2 10.8 89 100-193 2-91 (101)
14 cd02956 ybbN ybbN protein fami 99.8 8.6E-19 1.9E-23 128.9 11.3 85 109-195 2-87 (96)
15 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.3E-18 2.8E-23 133.2 12.1 93 99-194 9-104 (113)
16 PTZ00051 thioredoxin; Provisio 99.8 1.5E-18 3.2E-23 128.0 11.9 90 101-194 2-91 (98)
17 cd02987 Phd_like_Phd Phosducin 99.8 3E-18 6.6E-23 140.7 13.0 97 98-197 61-158 (175)
18 cd02984 TRX_PICOT TRX domain, 99.8 2.1E-18 4.6E-23 126.8 10.1 87 106-194 1-88 (97)
19 KOG0908 Thioredoxin-like prote 99.8 3.7E-19 8E-24 150.4 6.5 99 100-200 2-100 (288)
20 PF00085 Thioredoxin: Thioredo 99.8 7.3E-18 1.6E-22 124.4 12.3 87 105-194 4-91 (103)
21 cd02962 TMX2 TMX2 family; comp 99.8 1.1E-17 2.4E-22 134.3 13.4 94 99-195 28-129 (152)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 9.9E-18 2.2E-22 127.5 10.9 88 106-195 10-100 (111)
23 COG3118 Thioredoxin domain-con 99.7 5.1E-18 1.1E-22 147.2 9.4 94 100-196 24-119 (304)
24 cd02965 HyaE HyaE family; HyaE 99.7 1.5E-17 3.3E-22 126.4 10.7 84 108-195 18-104 (111)
25 cd03065 PDI_b_Calsequestrin_N 99.7 1.7E-17 3.7E-22 128.2 10.8 91 100-195 10-107 (120)
26 PRK09381 trxA thioredoxin; Pro 99.7 4.6E-17 1E-21 122.6 12.6 92 99-194 3-95 (109)
27 cd02996 PDI_a_ERp44 PDIa famil 99.7 2.7E-17 5.8E-22 123.9 10.8 89 101-193 3-98 (108)
28 cd03002 PDI_a_MPD1_like PDI fa 99.7 4.1E-17 8.8E-22 122.4 10.3 79 103-183 4-85 (109)
29 cd02994 PDI_a_TMX PDIa family, 99.7 1.3E-16 2.8E-21 118.4 11.6 86 101-194 3-90 (101)
30 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.1E-16 2.3E-21 118.5 10.6 85 106-195 6-94 (102)
31 cd02953 DsbDgamma DsbD gamma f 99.7 4.3E-17 9.2E-22 121.9 8.3 87 108-196 2-96 (104)
32 PRK10996 thioredoxin 2; Provis 99.7 1.8E-16 4E-21 125.3 12.3 86 106-195 41-127 (139)
33 cd03001 PDI_a_P5 PDIa family, 99.7 1.8E-16 3.8E-21 117.5 11.4 81 101-183 2-83 (103)
34 cd02988 Phd_like_VIAF Phosduci 99.7 2.4E-16 5.2E-21 131.2 11.9 95 97-197 80-175 (192)
35 cd02950 TxlA TRX-like protein 99.7 2.1E-16 4.5E-21 125.5 10.7 86 108-196 11-99 (142)
36 cd02997 PDI_a_PDIR PDIa family 99.7 5.2E-16 1.1E-20 115.0 11.3 89 101-194 2-95 (104)
37 cd02975 PfPDO_like_N Pyrococcu 99.7 3.7E-16 8E-21 119.4 10.6 85 110-196 15-99 (113)
38 cd02952 TRP14_like Human TRX-r 99.7 3.3E-16 7.2E-21 120.8 9.8 85 103-188 5-105 (119)
39 TIGR01068 thioredoxin thioredo 99.7 1.2E-15 2.6E-20 111.9 11.4 86 107-195 3-89 (101)
40 cd02949 TRX_NTR TRX domain, no 99.7 1.5E-15 3.3E-20 112.3 11.8 84 110-196 5-89 (97)
41 PTZ00443 Thioredoxin domain-co 99.7 7.7E-16 1.7E-20 130.9 11.6 93 100-195 31-127 (224)
42 cd02993 PDI_a_APS_reductase PD 99.7 8.3E-16 1.8E-20 116.3 10.5 83 101-184 3-90 (109)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.8E-15 3.9E-20 112.0 10.1 89 102-193 3-94 (104)
44 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.2E-15 2.7E-20 112.9 8.4 80 102-183 3-86 (105)
45 TIGR01126 pdi_dom protein disu 99.6 3E-15 6.5E-20 110.3 10.4 83 107-193 3-88 (102)
46 cd02992 PDI_a_QSOX PDIa family 99.6 1.9E-15 4.1E-20 115.6 9.4 80 102-183 4-89 (114)
47 cd03000 PDI_a_TMX3 PDIa family 99.6 1.7E-15 3.8E-20 113.3 8.5 72 108-182 7-82 (104)
48 cd02961 PDI_a_family Protein D 99.6 4E-15 8.7E-20 108.3 10.0 84 107-193 5-91 (101)
49 cd02951 SoxW SoxW family; SoxW 99.6 4.2E-15 9E-20 114.7 10.2 87 107-195 3-107 (125)
50 TIGR01295 PedC_BrcD bacterioci 99.6 1.4E-14 3.1E-19 112.2 11.0 83 106-193 12-109 (122)
51 KOG0190 Protein disulfide isom 99.6 1.1E-15 2.3E-20 141.8 4.9 117 99-219 25-145 (493)
52 cd02947 TRX_family TRX family; 99.6 2.7E-14 5.7E-19 101.9 11.1 83 109-195 2-84 (93)
53 TIGR00424 APS_reduc 5'-adenyly 99.6 2E-14 4.4E-19 133.5 11.7 89 99-188 351-444 (463)
54 PTZ00062 glutaredoxin; Provisi 99.6 2.2E-14 4.7E-19 120.4 10.4 92 105-207 4-95 (204)
55 cd02959 ERp19 Endoplasmic reti 99.5 3.9E-14 8.4E-19 108.9 9.0 85 117-202 17-105 (117)
56 PLN02309 5'-adenylylsulfate re 99.5 6.8E-14 1.5E-18 129.9 11.9 90 99-189 345-439 (457)
57 PRK00293 dipZ thiol:disulfide 99.5 2E-13 4.4E-18 130.5 10.9 95 100-195 453-558 (571)
58 cd02955 SSP411 TRX domain, SSP 99.5 6.9E-13 1.5E-17 103.1 11.3 88 108-198 6-105 (124)
59 TIGR01130 ER_PDI_fam protein d 99.5 8.5E-14 1.8E-18 128.3 7.3 87 106-195 7-97 (462)
60 cd03007 PDI_a_ERp29_N PDIa fam 99.4 2.9E-13 6.3E-18 103.8 7.8 73 106-183 7-91 (116)
61 PTZ00102 disulphide isomerase; 99.4 1.4E-13 3.1E-18 128.0 7.3 94 101-197 359-455 (477)
62 PTZ00102 disulphide isomerase; 99.4 1.6E-13 3.5E-18 127.6 6.7 90 100-195 33-126 (477)
63 PHA02125 thioredoxin-like prot 99.4 1.1E-12 2.3E-17 92.9 8.9 61 123-193 2-62 (75)
64 cd03010 TlpA_like_DsbE TlpA-li 99.4 1.6E-12 3.5E-17 100.2 10.6 78 118-197 24-124 (127)
65 cd03008 TryX_like_RdCVF Trypar 99.4 1.4E-12 3.1E-17 104.0 9.9 72 117-189 23-128 (146)
66 cd02982 PDI_b'_family Protein 99.4 8E-13 1.7E-17 98.0 7.5 66 119-184 12-80 (103)
67 KOG0190 Protein disulfide isom 99.4 3.5E-13 7.7E-18 125.1 6.6 85 108-195 374-461 (493)
68 KOG4277 Uncharacterized conser 99.4 2.5E-13 5.5E-18 118.1 5.1 85 108-194 31-120 (468)
69 cd03009 TryX_like_TryX_NRX Try 99.4 2E-12 4.3E-17 100.3 9.3 71 118-189 17-115 (131)
70 TIGR02740 TraF-like TraF-like 99.4 4.4E-12 9.4E-17 111.0 12.0 81 114-195 161-252 (271)
71 cd02964 TryX_like_family Trypa 99.4 1.5E-12 3.2E-17 101.5 8.1 76 118-194 16-120 (132)
72 PF13905 Thioredoxin_8: Thiore 99.4 3.2E-12 7E-17 93.5 8.9 67 119-186 1-95 (95)
73 TIGR00411 redox_disulf_1 small 99.4 3.5E-12 7.5E-17 90.7 8.8 57 122-178 2-59 (82)
74 cd02973 TRX_GRX_like Thioredox 99.4 2.5E-12 5.4E-17 88.5 7.4 57 122-178 2-58 (67)
75 TIGR02187 GlrX_arch Glutaredox 99.4 6.9E-12 1.5E-16 105.9 11.4 77 118-196 18-100 (215)
76 cd02966 TlpA_like_family TlpA- 99.3 9.1E-12 2E-16 92.0 9.9 74 118-192 18-116 (116)
77 PF13098 Thioredoxin_2: Thiore 99.3 3E-12 6.5E-17 96.4 7.4 79 117-196 3-105 (112)
78 TIGR02187 GlrX_arch Glutaredox 99.3 5.1E-12 1.1E-16 106.7 9.5 72 111-182 125-196 (215)
79 PRK15412 thiol:disulfide inter 99.3 1.1E-11 2.4E-16 102.3 10.8 76 118-196 67-165 (185)
80 TIGR02738 TrbB type-F conjugat 99.3 1.2E-11 2.5E-16 99.6 10.3 77 118-196 49-142 (153)
81 PRK14018 trifunctional thiored 99.3 1.3E-11 2.8E-16 116.3 10.9 80 117-197 54-163 (521)
82 COG4232 Thiol:disulfide interc 99.3 8.7E-12 1.9E-16 117.1 7.3 94 102-196 457-557 (569)
83 cd03012 TlpA_like_DipZ_like Tl 99.3 4.9E-11 1.1E-15 92.1 10.1 75 118-193 22-125 (126)
84 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 3.9E-11 8.5E-16 87.9 8.7 65 114-178 7-71 (89)
85 TIGR00385 dsbE periplasmic pro 99.2 4.7E-11 1E-15 97.5 9.8 75 118-195 62-159 (173)
86 TIGR00412 redox_disulf_2 small 99.2 3.9E-11 8.5E-16 85.2 8.1 61 123-192 2-63 (76)
87 TIGR01130 ER_PDI_fam protein d 99.2 2.2E-11 4.7E-16 112.3 8.5 75 107-184 353-431 (462)
88 KOG1672 ATP binding protein [P 99.2 1.1E-10 2.3E-15 95.8 9.7 106 93-202 60-165 (211)
89 cd02967 mauD Methylamine utili 99.2 1.2E-10 2.6E-15 87.8 9.3 70 118-188 20-110 (114)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.7E-10 3.7E-15 88.0 8.8 76 118-196 19-115 (123)
91 PRK03147 thiol-disulfide oxido 99.2 3.5E-10 7.6E-15 91.3 10.6 77 118-195 60-160 (173)
92 KOG0191 Thioredoxin/protein di 99.1 8.8E-11 1.9E-15 107.3 7.8 66 117-182 45-111 (383)
93 KOG0912 Thiol-disulfide isomer 99.1 9.6E-11 2.1E-15 102.1 7.5 73 109-183 5-83 (375)
94 PLN02919 haloacid dehalogenase 99.1 2.2E-10 4.9E-15 116.4 10.5 76 118-194 419-523 (1057)
95 PF08534 Redoxin: Redoxin; In 99.1 5.4E-10 1.2E-14 88.0 9.7 78 117-195 26-136 (146)
96 PF13899 Thioredoxin_7: Thiore 99.0 9.8E-10 2.1E-14 78.8 7.6 63 117-180 15-81 (82)
97 PRK13728 conjugal transfer pro 99.0 1.8E-09 3.9E-14 89.0 9.9 73 123-197 73-161 (181)
98 PF02114 Phosducin: Phosducin; 99.0 1.8E-09 4E-14 94.1 10.0 98 98-198 124-222 (265)
99 cd02960 AGR Anterior Gradient 99.0 1.3E-09 2.8E-14 85.2 7.9 77 117-196 21-102 (130)
100 TIGR01626 ytfJ_HI0045 conserve 99.0 1.8E-09 3.8E-14 89.3 8.7 77 118-196 58-169 (184)
101 cd02958 UAS UAS family; UAS is 99.0 6.1E-09 1.3E-13 79.2 10.2 80 117-196 15-100 (114)
102 TIGR02661 MauD methylamine deh 99.0 3.5E-09 7.5E-14 87.8 9.3 70 118-189 73-162 (189)
103 COG0526 TrxA Thiol-disulfide i 99.0 2.8E-09 6.1E-14 77.6 7.7 66 119-184 32-101 (127)
104 KOG1731 FAD-dependent sulfhydr 98.9 5.2E-10 1.1E-14 104.6 2.5 76 105-181 44-125 (606)
105 cd02969 PRX_like1 Peroxiredoxi 98.9 1.7E-08 3.8E-13 81.8 9.4 71 118-189 24-125 (171)
106 KOG0191 Thioredoxin/protein di 98.8 8.3E-09 1.8E-13 94.3 8.0 82 101-184 146-230 (383)
107 PTZ00056 glutathione peroxidas 98.8 1.6E-08 3.4E-13 84.7 9.0 42 118-159 38-81 (199)
108 PLN02399 phospholipid hydroper 98.8 1.6E-08 3.5E-13 86.8 8.7 42 118-159 98-141 (236)
109 cd01659 TRX_superfamily Thiore 98.8 2.5E-08 5.4E-13 64.7 7.7 60 123-182 1-63 (69)
110 cd00340 GSH_Peroxidase Glutath 98.8 2.9E-08 6.3E-13 79.2 8.6 41 118-159 21-63 (152)
111 PRK11509 hydrogenase-1 operon 98.8 5.5E-08 1.2E-12 76.2 9.4 85 108-196 25-113 (132)
112 PF14595 Thioredoxin_9: Thiore 98.8 4.2E-08 9E-13 76.7 8.8 86 108-194 30-118 (129)
113 KOG0914 Thioredoxin-like prote 98.8 1.4E-08 3E-13 85.0 6.3 85 99-183 124-216 (265)
114 cd03014 PRX_Atyp2cys Peroxired 98.8 8.7E-08 1.9E-12 75.1 10.6 78 118-196 25-132 (143)
115 smart00594 UAS UAS domain. 98.7 1.9E-07 4.1E-12 72.1 10.9 66 117-182 25-96 (122)
116 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 8.3E-08 1.8E-12 72.9 8.5 70 118-188 24-123 (124)
117 cd03017 PRX_BCP Peroxiredoxin 98.7 6.1E-08 1.3E-12 75.4 7.9 82 118-200 22-136 (140)
118 PRK00522 tpx lipid hydroperoxi 98.7 2.4E-07 5.2E-12 75.3 10.8 74 118-192 43-149 (167)
119 PLN02412 probable glutathione 98.7 1.3E-07 2.9E-12 76.8 9.0 42 118-159 28-71 (167)
120 TIGR02540 gpx7 putative glutat 98.6 2.2E-07 4.8E-12 74.1 8.6 41 118-158 21-63 (153)
121 PF13728 TraF: F plasmid trans 98.6 6.4E-07 1.4E-11 75.9 11.5 85 111-196 112-207 (215)
122 TIGR02200 GlrX_actino Glutared 98.6 2.2E-07 4.9E-12 64.7 6.4 54 123-182 2-60 (77)
123 cd02970 PRX_like2 Peroxiredoxi 98.5 6.7E-07 1.4E-11 69.9 9.3 43 119-161 24-68 (149)
124 TIGR02196 GlrX_YruB Glutaredox 98.5 4.1E-07 9E-12 62.3 6.9 52 123-179 2-57 (74)
125 KOG2501 Thioredoxin, nucleored 98.5 3E-07 6.5E-12 73.7 6.4 70 118-188 32-130 (157)
126 cd03018 PRX_AhpE_like Peroxire 98.5 1.5E-06 3.2E-11 68.3 9.5 74 120-194 29-134 (149)
127 PF06110 DUF953: Eukaryotic pr 98.4 1.6E-06 3.5E-11 66.8 9.1 82 105-187 3-103 (119)
128 KOG3414 Component of the U4/U6 98.4 2.1E-06 4.6E-11 66.1 9.5 91 102-192 6-97 (142)
129 cd02971 PRX_family Peroxiredox 98.4 2.7E-06 5.8E-11 66.0 9.8 77 118-195 21-131 (140)
130 cd02968 SCO SCO (an acronym fo 98.4 1.5E-06 3.3E-11 67.6 8.2 42 118-159 21-68 (142)
131 PRK09437 bcp thioredoxin-depen 98.4 9.7E-07 2.1E-11 70.2 6.9 78 118-196 29-142 (154)
132 PTZ00256 glutathione peroxidas 98.4 1.5E-06 3.2E-11 71.6 8.2 42 118-159 39-83 (183)
133 TIGR03137 AhpC peroxiredoxin. 98.4 2.2E-06 4.9E-11 70.8 9.3 74 118-192 30-137 (187)
134 cd03015 PRX_Typ2cys Peroxiredo 98.4 2.2E-06 4.8E-11 69.7 9.0 75 118-193 28-139 (173)
135 KOG0911 Glutaredoxin-related p 98.4 2.9E-07 6.3E-12 77.4 3.6 89 101-195 3-91 (227)
136 TIGR02180 GRX_euk Glutaredoxin 98.3 1.6E-06 3.4E-11 61.5 6.1 54 123-177 1-59 (84)
137 PF03190 Thioredox_DsbH: Prote 98.3 4.4E-06 9.4E-11 67.7 9.2 78 117-195 35-124 (163)
138 TIGR02739 TraF type-F conjugat 98.2 1.5E-05 3.2E-10 69.2 10.9 84 111-195 142-236 (256)
139 PRK10382 alkyl hydroperoxide r 98.2 1.9E-05 4.1E-10 65.6 10.1 74 118-192 30-137 (187)
140 PF11009 DUF2847: Protein of u 98.2 3.9E-05 8.4E-10 57.8 10.8 88 102-191 2-95 (105)
141 KOG3171 Conserved phosducin-li 98.1 1.1E-05 2.5E-10 67.5 8.1 83 100-183 139-222 (273)
142 PRK11200 grxA glutaredoxin 1; 98.1 1.1E-05 2.3E-10 58.1 6.9 59 122-182 2-66 (85)
143 COG2143 Thioredoxin-related pr 98.1 1.6E-05 3.5E-10 63.6 8.3 78 117-195 40-137 (182)
144 cd02991 UAS_ETEA UAS family, E 98.1 6.7E-05 1.4E-09 57.6 10.7 78 117-196 15-102 (116)
145 PF02966 DIM1: Mitosis protein 98.0 4.6E-05 1E-09 59.3 9.5 81 102-183 3-85 (133)
146 PRK13703 conjugal pilus assemb 98.0 5.7E-05 1.2E-09 65.3 10.6 82 114-196 138-230 (248)
147 PRK15000 peroxidase; Provision 98.0 3.8E-05 8.3E-10 64.3 9.3 75 118-193 33-144 (200)
148 KOG3425 Uncharacterized conser 98.0 3.7E-05 8.1E-10 58.8 7.8 82 105-186 10-109 (128)
149 PF13192 Thioredoxin_3: Thiore 98.0 4.2E-05 9E-10 54.0 7.5 55 124-182 3-57 (76)
150 cd02976 NrdH NrdH-redoxin (Nrd 98.0 3.4E-05 7.5E-10 52.5 6.7 51 123-178 2-56 (73)
151 PRK13190 putative peroxiredoxi 97.9 7.5E-05 1.6E-09 62.6 9.0 72 118-190 26-133 (202)
152 KOG0913 Thiol-disulfide isomer 97.8 2.8E-06 6.1E-11 71.9 -0.9 74 106-183 30-105 (248)
153 cd03016 PRX_1cys Peroxiredoxin 97.8 9.4E-05 2E-09 61.9 8.2 72 121-193 28-136 (203)
154 PRK10606 btuE putative glutath 97.8 4.2E-05 9E-10 63.3 6.0 41 118-159 24-66 (183)
155 PRK13599 putative peroxiredoxi 97.8 9.5E-05 2.1E-09 62.6 8.2 73 118-191 27-136 (215)
156 TIGR03143 AhpF_homolog putativ 97.8 9.2E-05 2E-09 71.0 9.0 70 108-178 465-535 (555)
157 PTZ00137 2-Cys peroxiredoxin; 97.8 0.00014 3E-09 63.4 9.1 72 118-190 97-204 (261)
158 TIGR02183 GRXA Glutaredoxin, G 97.8 7.9E-05 1.7E-09 53.9 6.4 55 123-177 2-62 (86)
159 PRK15317 alkyl hydroperoxide r 97.7 0.00013 2.7E-09 69.3 8.9 71 108-178 105-175 (517)
160 PTZ00253 tryparedoxin peroxida 97.7 0.00024 5.3E-09 59.2 9.4 75 118-193 35-146 (199)
161 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00011 2.4E-09 51.7 6.3 55 123-182 2-61 (82)
162 PRK13191 putative peroxiredoxi 97.7 0.00026 5.6E-09 60.0 9.0 75 118-193 32-143 (215)
163 PRK13189 peroxiredoxin; Provis 97.6 0.00032 6.9E-09 59.7 8.8 74 118-192 34-144 (222)
164 PF00462 Glutaredoxin: Glutare 97.6 0.00031 6.8E-09 46.9 6.4 51 123-178 1-55 (60)
165 PF13848 Thioredoxin_6: Thiore 97.5 0.0021 4.5E-08 51.8 12.2 99 84-185 62-164 (184)
166 KOG3170 Conserved phosducin-li 97.5 0.00044 9.5E-09 57.6 8.1 96 97-197 89-184 (240)
167 cd02066 GRX_family Glutaredoxi 97.5 0.00041 8.9E-09 46.7 6.1 50 123-177 2-55 (72)
168 TIGR02190 GlrX-dom Glutaredoxi 97.5 0.00048 1E-08 48.8 6.5 54 119-177 6-62 (79)
169 TIGR03140 AhpF alkyl hydropero 97.4 0.00061 1.3E-08 64.7 8.8 71 108-178 106-176 (515)
170 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00072 1.6E-08 46.9 6.3 50 124-178 2-54 (72)
171 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.00064 1.4E-08 56.4 6.3 61 118-182 76-181 (197)
172 TIGR03143 AhpF_homolog putativ 97.3 0.0025 5.4E-08 61.2 11.1 89 108-196 355-443 (555)
173 PHA03050 glutaredoxin; Provisi 97.2 0.0016 3.5E-08 49.3 7.5 54 123-176 15-73 (108)
174 PRK10877 protein disulfide iso 97.2 0.0016 3.5E-08 55.8 7.9 63 117-182 105-211 (232)
175 TIGR02181 GRX_bact Glutaredoxi 97.2 0.0013 2.7E-08 46.2 5.8 53 123-182 1-57 (79)
176 cd03418 GRX_GRXb_1_3_like Glut 97.2 0.0021 4.6E-08 44.4 6.9 50 123-177 2-56 (75)
177 PRK10329 glutaredoxin-like pro 97.1 0.0029 6.3E-08 45.3 7.2 51 123-178 3-56 (81)
178 PF07449 HyaE: Hydrogenase-1 e 97.1 0.0015 3.3E-08 49.4 5.9 88 100-193 10-101 (107)
179 cd03027 GRX_DEP Glutaredoxin ( 97.1 0.0031 6.7E-08 43.7 6.9 49 123-176 3-55 (73)
180 cd02972 DsbA_family DsbA famil 97.0 0.0027 5.9E-08 45.0 6.5 57 123-179 1-90 (98)
181 TIGR02189 GlrX-like_plant Glut 97.0 0.002 4.4E-08 47.8 5.8 53 123-182 10-69 (99)
182 cd03023 DsbA_Com1_like DsbA fa 96.9 0.0031 6.7E-08 49.0 6.2 40 118-157 4-43 (154)
183 TIGR00365 monothiol glutaredox 96.9 0.0081 1.7E-07 44.4 8.1 53 120-177 12-72 (97)
184 cd03029 GRX_hybridPRX5 Glutare 96.8 0.0058 1.2E-07 42.1 6.4 53 123-182 3-58 (72)
185 PRK11657 dsbG disulfide isomer 96.8 0.0062 1.3E-07 52.8 8.0 30 118-147 116-145 (251)
186 cd02981 PDI_b_family Protein D 96.6 0.021 4.6E-07 41.2 8.6 72 102-182 2-74 (97)
187 PF05768 DUF836: Glutaredoxin- 96.5 0.011 2.3E-07 42.1 6.3 54 123-178 2-55 (81)
188 cd03028 GRX_PICOT_like Glutare 96.5 0.01 2.2E-07 43.1 6.1 57 119-182 7-71 (90)
189 cd02983 P5_C P5 family, C-term 96.4 0.067 1.5E-06 41.7 10.6 82 99-183 2-92 (130)
190 COG0695 GrxC Glutaredoxin and 96.3 0.013 2.9E-07 41.7 6.0 50 123-177 3-58 (80)
191 PRK10638 glutaredoxin 3; Provi 96.2 0.017 3.7E-07 41.0 6.2 49 123-176 4-56 (83)
192 PRK10824 glutaredoxin-4; Provi 96.0 0.028 6E-07 43.1 6.7 56 120-182 15-78 (115)
193 COG1225 Bcp Peroxiredoxin [Pos 95.9 0.036 7.7E-07 44.8 7.3 80 117-197 28-143 (157)
194 KOG2603 Oligosaccharyltransfer 95.5 0.058 1.2E-06 47.9 7.4 88 99-187 40-141 (331)
195 PF01216 Calsequestrin: Calseq 95.2 0.15 3.1E-06 46.2 8.9 86 100-190 35-128 (383)
196 KOG1752 Glutaredoxin and relat 95.1 0.15 3.2E-06 38.3 7.7 54 120-177 14-72 (104)
197 PRK12759 bifunctional gluaredo 94.9 0.072 1.6E-06 49.4 6.5 51 123-178 4-66 (410)
198 PTZ00062 glutaredoxin; Provisi 94.7 0.17 3.6E-06 42.7 7.8 54 119-177 112-173 (204)
199 cd03019 DsbA_DsbA DsbA family, 94.5 0.073 1.6E-06 42.5 5.1 37 118-154 14-51 (178)
200 PF07912 ERp29_N: ERp29, N-ter 94.1 0.8 1.7E-05 35.5 9.7 78 108-189 12-100 (126)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 94.1 0.28 6E-06 37.1 7.1 63 119-181 15-86 (111)
202 PF13462 Thioredoxin_4: Thiore 94.1 0.14 3.1E-06 40.1 5.8 41 118-158 11-54 (162)
203 cd03072 PDI_b'_ERp44 PDIb' fam 93.9 0.49 1.1E-05 35.7 8.1 62 118-181 15-82 (111)
204 cd02974 AhpF_NTD_N Alkyl hydro 93.8 1.1 2.4E-05 32.9 9.7 76 108-196 8-83 (94)
205 COG1331 Highly conserved prote 92.8 0.52 1.1E-05 46.1 8.3 85 107-194 33-129 (667)
206 cd03013 PRX5_like Peroxiredoxi 92.7 0.26 5.7E-06 39.3 5.2 52 119-170 30-88 (155)
207 PRK10954 periplasmic protein d 92.4 0.2 4.4E-06 41.8 4.5 39 119-157 37-79 (207)
208 cd02978 KaiB_like KaiB-like fa 92.2 0.61 1.3E-05 32.7 5.9 57 122-178 3-61 (72)
209 cd03067 PDI_b_PDIR_N PDIb fami 91.4 1.4 3.1E-05 33.0 7.3 79 102-183 4-90 (112)
210 cd03066 PDI_b_Calsequestrin_mi 89.8 5.3 0.00011 29.2 9.5 73 101-181 2-75 (102)
211 cd03031 GRX_GRX_like Glutaredo 89.8 1.4 3E-05 35.2 6.6 43 130-177 15-65 (147)
212 cd03069 PDI_b_ERp57 PDIb famil 89.3 4 8.7E-05 30.0 8.5 71 101-181 2-73 (104)
213 KOG2640 Thioredoxin [Function 89.1 0.11 2.4E-06 46.1 -0.1 71 110-180 67-138 (319)
214 PRK09301 circadian clock prote 89.1 1.3 2.9E-05 33.2 5.6 61 118-178 4-66 (103)
215 TIGR02654 circ_KaiB circadian 89.0 1.4 3E-05 32.1 5.5 59 120-178 3-63 (87)
216 PF13848 Thioredoxin_6: Thiore 88.9 2.1 4.6E-05 34.0 7.3 51 137-191 8-59 (184)
217 cd03068 PDI_b_ERp72 PDIb famil 85.5 12 0.00027 27.7 9.3 73 101-181 2-75 (107)
218 cd02977 ArsC_family Arsenate R 85.0 1.1 2.4E-05 33.1 3.3 32 124-160 2-33 (105)
219 PHA03075 glutaredoxin-like pro 85.0 1.6 3.5E-05 33.4 4.1 30 120-149 2-31 (123)
220 PF09673 TrbC_Ftype: Type-F co 84.0 5.5 0.00012 30.1 6.8 21 161-181 60-80 (113)
221 cd03060 GST_N_Omega_like GST_N 83.5 4.2 9.1E-05 27.4 5.5 51 124-177 2-53 (71)
222 TIGR01617 arsC_related transcr 83.1 2.5 5.4E-05 31.9 4.6 34 124-162 2-35 (117)
223 TIGR03140 AhpF alkyl hydropero 82.5 12 0.00025 35.7 9.9 78 108-197 8-85 (515)
224 PF00837 T4_deiodinase: Iodoth 82.1 1.2 2.5E-05 38.4 2.6 43 117-159 100-143 (237)
225 PRK15317 alkyl hydroperoxide r 81.6 13 0.00028 35.3 9.9 77 108-197 8-84 (517)
226 cd03040 GST_N_mPGES2 GST_N fam 80.0 5.5 0.00012 27.1 5.1 61 123-187 2-62 (77)
227 cd03035 ArsC_Yffb Arsenate Red 79.3 2.6 5.7E-05 31.4 3.5 32 124-160 2-33 (105)
228 cd03036 ArsC_like Arsenate Red 79.3 3.1 6.7E-05 31.2 3.9 32 124-160 2-33 (111)
229 PF06053 DUF929: Domain of unk 78.1 8.6 0.00019 33.4 6.7 57 117-180 56-113 (249)
230 PRK01655 spxA transcriptional 77.2 4.5 9.8E-05 31.4 4.4 34 123-161 2-35 (131)
231 cd00570 GST_N_family Glutathio 76.6 2.8 6.2E-05 26.8 2.7 50 125-177 3-54 (71)
232 PF07689 KaiB: KaiB domain; I 76.6 0.95 2.1E-05 32.5 0.4 50 128-177 5-56 (82)
233 cd03051 GST_N_GTT2_like GST_N 74.9 6.7 0.00014 26.0 4.3 52 124-178 2-57 (74)
234 PF04592 SelP_N: Selenoprotein 74.5 5.7 0.00012 34.1 4.6 46 114-159 21-71 (238)
235 cd03037 GST_N_GRX2 GST_N famil 73.3 7.3 0.00016 26.0 4.2 50 125-177 3-52 (71)
236 PF02630 SCO1-SenC: SCO1/SenC; 71.4 8.6 0.00019 31.1 4.9 43 118-160 51-98 (174)
237 cd03032 ArsC_Spx Arsenate Redu 69.5 12 0.00025 28.2 4.9 33 123-160 2-34 (115)
238 PRK12559 transcriptional regul 67.8 9.3 0.0002 29.7 4.1 33 123-160 2-34 (131)
239 COG3634 AhpF Alkyl hydroperoxi 67.3 23 0.00051 32.7 7.1 73 108-182 105-177 (520)
240 TIGR02742 TrbC_Ftype type-F co 66.8 8.2 0.00018 30.1 3.6 22 161-182 60-81 (130)
241 PF13743 Thioredoxin_5: Thiore 65.8 12 0.00026 30.4 4.6 26 125-150 2-27 (176)
242 PF13743 Thioredoxin_5: Thiore 65.3 4.6 0.0001 32.8 2.1 20 161-180 136-155 (176)
243 cd03041 GST_N_2GST_N GST_N fam 64.0 32 0.00069 23.4 5.9 49 124-177 3-55 (77)
244 COG1651 DsbG Protein-disulfide 63.7 13 0.00029 31.3 4.7 37 119-155 84-120 (244)
245 cd03059 GST_N_SspA GST_N famil 63.4 20 0.00043 23.7 4.7 51 124-177 2-53 (73)
246 PF01323 DSBA: DSBA-like thior 63.0 11 0.00024 30.1 4.0 33 122-154 1-33 (193)
247 cd03045 GST_N_Delta_Epsilon GS 60.3 13 0.00029 24.7 3.4 51 124-177 2-56 (74)
248 COG3019 Predicted metal-bindin 59.9 27 0.00058 27.8 5.3 45 122-171 27-71 (149)
249 COG1999 Uncharacterized protei 59.7 46 0.00099 27.8 7.2 64 118-181 66-139 (207)
250 COG4545 Glutaredoxin-related p 59.3 22 0.00049 25.2 4.3 55 124-182 5-73 (85)
251 cd03055 GST_N_Omega GST_N fami 55.1 41 0.00088 23.7 5.4 52 123-177 19-71 (89)
252 PRK13344 spxA transcriptional 54.5 22 0.00048 27.5 4.2 33 123-160 2-34 (132)
253 cd03025 DsbA_FrnE_like DsbA fa 54.0 8.6 0.00019 30.9 1.8 22 161-182 158-179 (193)
254 PF04134 DUF393: Protein of un 53.1 21 0.00045 26.3 3.7 56 126-182 2-60 (114)
255 COG0278 Glutaredoxin-related p 50.5 97 0.0021 23.2 6.7 51 128-182 27-79 (105)
256 PRK13730 conjugal transfer pil 46.8 61 0.0013 27.4 5.7 20 161-180 151-170 (212)
257 PF01323 DSBA: DSBA-like thior 46.5 20 0.00043 28.6 2.9 21 161-183 156-176 (193)
258 cd03025 DsbA_FrnE_like DsbA fa 45.5 31 0.00068 27.5 3.9 27 123-149 3-29 (193)
259 PF13417 GST_N_3: Glutathione 44.4 86 0.0019 21.0 5.5 49 126-177 2-51 (75)
260 cd03023 DsbA_Com1_like DsbA fa 44.4 13 0.00027 28.3 1.3 18 161-178 118-135 (154)
261 PF06764 DUF1223: Protein of u 40.0 1.4E+02 0.0031 25.0 7.1 59 124-183 3-79 (202)
262 COG2077 Tpx Peroxiredoxin [Pos 38.9 1E+02 0.0022 24.9 5.6 64 118-181 43-110 (158)
263 cd03056 GST_N_4 GST_N family, 38.2 1E+02 0.0023 19.9 5.1 50 125-177 3-56 (73)
264 PRK10954 periplasmic protein d 37.7 18 0.00039 30.0 1.3 21 161-183 156-176 (207)
265 PF00255 GSHPx: Glutathione pe 37.6 81 0.0018 23.7 4.8 63 117-180 19-91 (108)
266 COG3531 Predicted protein-disu 37.6 29 0.00062 29.2 2.4 22 162-183 164-185 (212)
267 cd03019 DsbA_DsbA DsbA family, 34.9 22 0.00047 27.9 1.4 19 160-178 131-149 (178)
268 cd03022 DsbA_HCCA_Iso DsbA fam 32.6 25 0.00054 28.1 1.3 18 161-178 156-173 (192)
269 KOG2507 Ubiquitin regulatory p 30.5 3.2E+02 0.0069 25.9 8.1 77 118-195 17-99 (506)
270 KOG0855 Alkyl hydroperoxide re 29.0 2.2E+02 0.0048 23.5 6.1 30 118-148 89-124 (211)
271 PF09822 ABC_transp_aux: ABC-t 28.3 3.8E+02 0.0081 22.9 10.5 64 111-175 17-91 (271)
272 KOG2792 Putative cytochrome C 27.9 1.5E+02 0.0032 26.2 5.2 41 118-158 138-186 (280)
273 TIGR00014 arsC arsenate reduct 27.4 83 0.0018 23.5 3.4 32 124-160 2-33 (114)
274 cd03033 ArsC_15kD Arsenate Red 27.1 80 0.0017 23.7 3.2 32 123-159 2-33 (113)
275 cd03052 GST_N_GDAP1 GST_N fami 27.0 1.8E+02 0.0039 19.5 4.8 51 124-177 2-56 (73)
276 cd03034 ArsC_ArsC Arsenate Red 26.2 90 0.002 23.2 3.4 31 124-159 2-32 (112)
277 PF11287 DUF3088: Protein of u 23.9 1.2E+02 0.0026 23.1 3.6 50 130-179 23-75 (112)
278 PF14424 Toxin-deaminase: The 23.3 3.5E+02 0.0075 21.0 6.2 31 124-157 99-131 (133)
279 TIGR03439 methyl_EasF probable 21.8 4.7E+02 0.01 23.5 7.6 57 119-178 76-134 (319)
280 TIGR03765 ICE_PFL_4695 integra 20.9 1.1E+02 0.0025 22.9 2.9 38 138-178 62-99 (105)
281 PF11072 DUF2859: Protein of u 20.8 1.3E+02 0.0028 23.9 3.3 37 138-177 100-136 (142)
282 KOG1651 Glutathione peroxidase 20.8 1.8E+02 0.0039 23.8 4.2 44 116-159 31-76 (171)
283 COG1651 DsbG Protein-disulfide 20.6 54 0.0012 27.5 1.3 25 120-144 119-143 (244)
No 1
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=1.2e-21 Score=149.68 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=78.8
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCce
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~ 185 (229)
.+++.+.+..+.++++||+|||+||++|+.|.|.+++++++|++ +.|++||+|++++++++|+|.++|||++|++ |+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~--G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFR--NK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEEC--CE
Confidence 46788888766789999999999999999999999999999998 6899999999999999999999999999998 67
Q ss_pred EEEEEecccC
Q 026997 186 VCIEEVGLAE 195 (229)
Q Consensus 186 ~~~~~~G~~~ 195 (229)
.+.+..|...
T Consensus 80 ~v~~~~G~~~ 89 (114)
T cd02954 80 HMKIDLGTGN 89 (114)
T ss_pred EEEEEcCCCC
Confidence 7777777554
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=146.77 Aligned_cols=83 Identities=49% Similarity=0.789 Sum_probs=73.1
Q ss_pred HHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEEE
Q 026997 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCIE 189 (229)
Q Consensus 110 ~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~ 189 (229)
+.......++++++|+|||+|||+|+.+.|.+.+|+.+|+++.|++||+|+..++++.|+|+.+|||+||++ |+.+.+
T Consensus 12 ~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~--g~~~~~ 89 (106)
T KOG0907|consen 12 LVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKG--GEEVDE 89 (106)
T ss_pred HHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEEC--CEEEEE
Confidence 333344456799999999999999999999999999999999999999999999999999999999999999 566667
Q ss_pred Eeccc
Q 026997 190 EVGLA 194 (229)
Q Consensus 190 ~~G~~ 194 (229)
.+|-.
T Consensus 90 ~vGa~ 94 (106)
T KOG0907|consen 90 VVGAN 94 (106)
T ss_pred EecCC
Confidence 76644
No 3
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=154.77 Aligned_cols=92 Identities=23% Similarity=0.407 Sum_probs=82.7
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
..+.+..+|++.+.+ ++.||||+|||+||+||+.+.|.++++..+|.+ ++|++||.|++.+++.+|+|..+||+++|+
T Consensus 45 ~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred ccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 446677889998876 789999999999999999999999999999987 999999999999999999999999999999
Q ss_pred CCCceEEEEEecccCC
Q 026997 181 GAHGRVCIEEVGLAEV 196 (229)
Q Consensus 181 ~g~g~~~~~~~G~~~~ 196 (229)
| |+.+++.+|..+.
T Consensus 124 n--Ge~~d~~vG~~~~ 137 (150)
T KOG0910|consen 124 N--GEKVDRFVGAVPK 137 (150)
T ss_pred C--CEEeeeecccCCH
Confidence 9 6677788776543
No 4
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=7.5e-21 Score=142.77 Aligned_cols=88 Identities=32% Similarity=0.517 Sum_probs=79.4
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH---HHHHHCCCCcccEEEEEECC
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~---~l~~~~~I~~~Pt~l~~~~g 182 (229)
+.++|.+.+....++++||+|||+||++|+.+.|.+++++++++++.|+.||+|++. +++++|+|.++||++||++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~- 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD- 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC-
Confidence 568899999876799999999999999999999999999999988999999999874 7999999999999999987
Q ss_pred CceEEEEEecccC
Q 026997 183 HGRVCIEEVGLAE 195 (229)
Q Consensus 183 ~g~~~~~~~G~~~ 195 (229)
|+.+.+..|...
T Consensus 81 -G~~v~~~~G~~~ 92 (103)
T cd02985 81 -GEKIHEEEGIGP 92 (103)
T ss_pred -CeEEEEEeCCCH
Confidence 677888888654
No 5
>PHA02278 thioredoxin-like protein
Probab=99.85 E-value=3.6e-21 Score=145.03 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=78.1
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC-CcEEEEEECcCc----HHHHHHCCCCcccEEEEE
Q 026997 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH----KSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 105 ~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~----~~l~~~~~I~~~Pt~l~~ 179 (229)
++.++|.+.+ ..++++||+|||+||++|+.+.|.++++++++. ++.|+.||+|++ ++++++|+|.++|||++|
T Consensus 2 ~~~~~~~~~i--~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAI--RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHH--hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 4678888888 468899999999999999999999999998754 478999999976 689999999999999999
Q ss_pred ECCCceEEEEEecccCCCC
Q 026997 180 RGAHGRVCIEEVGLAEVPP 198 (229)
Q Consensus 180 ~~g~g~~~~~~~G~~~~~~ 198 (229)
++ |+.+.+..|......
T Consensus 80 k~--G~~v~~~~G~~~~~~ 96 (103)
T PHA02278 80 KD--GQLVKKYEDQVTPMQ 96 (103)
T ss_pred EC--CEEEEEEeCCCCHHH
Confidence 98 688888888654433
No 6
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=2.7e-20 Score=142.36 Aligned_cols=100 Identities=25% Similarity=0.434 Sum_probs=90.4
Q ss_pred CCCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 98 ~~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
...+..|++.++|.+.+. .+++++|+||++||++|+.+.|.+++++++|+++.|++||++++++++++|+|..+||++
T Consensus 3 ~g~v~~i~~~~~~~~~i~--~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK--SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCCeEEeCCHHHHHHHHh--CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 356788999999999984 467999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCceEEEEEecccCCCCCCC
Q 026997 178 FYRGAHGRVCIEEVGLAEVPPPHS 201 (229)
Q Consensus 178 ~~~~g~g~~~~~~~G~~~~~~~~~ 201 (229)
+|++ |+.+.+..|..+....++
T Consensus 81 ~fk~--G~~v~~~~g~~~~~~~~~ 102 (113)
T cd02989 81 LFKN--GKTVDRIVGFEELGGKDD 102 (113)
T ss_pred EEEC--CEEEEEEECccccCCCCC
Confidence 9998 688889999877666543
No 7
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.84 E-value=3e-20 Score=141.42 Aligned_cols=86 Identities=9% Similarity=0.118 Sum_probs=78.4
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCce
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~ 185 (229)
.+++++.+.+..+++|||+|+|+||++|+.+.|.+++++++|++ +.|++||+|+.+++++.|+|...||++||++|+-.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46788888877899999999999999999999999999999999 99999999999999999999999999999998766
Q ss_pred EEEEEec
Q 026997 186 VCIEEVG 192 (229)
Q Consensus 186 ~~~~~~G 192 (229)
.++.-+|
T Consensus 82 ~~d~gt~ 88 (114)
T cd02986 82 KVDYGSP 88 (114)
T ss_pred EEecCCC
Confidence 6655444
No 8
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.82 E-value=8.4e-20 Score=144.58 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=81.8
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEE-E
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR-F 178 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l-~ 178 (229)
+.++.+.+++++.+....+++|||+|||+||++|+.+.|.++++++++++ +.|++||+|+++++++.|+|.+.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 45678999999999877899999999999999999999999999999998 788999999999999999999776666 8
Q ss_pred EECCCceEEEEEecc
Q 026997 179 YRGAHGRVCIEEVGL 193 (229)
Q Consensus 179 ~~~g~g~~~~~~~G~ 193 (229)
|++|+ ..+.+.+|.
T Consensus 85 fk~g~-~~vd~~tG~ 98 (142)
T PLN00410 85 FRNKH-IMIDLGTGN 98 (142)
T ss_pred EECCe-EEEEEeccc
Confidence 88863 277788774
No 9
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.82 E-value=1e-19 Score=138.71 Aligned_cols=96 Identities=30% Similarity=0.565 Sum_probs=84.9
Q ss_pred CCeEEeCCHhHHHHHHHccC-CCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 99 PNMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~~-~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
..+.+|++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.+++++++|+++.|++||++++ +++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 35678888 88988886532 5899999999999999999999999999999999999999999 999999999999999
Q ss_pred EEECCCceEEEEEecccCCCC
Q 026997 178 FYRGAHGRVCIEEVGLAEVPP 198 (229)
Q Consensus 178 ~~~~g~g~~~~~~~G~~~~~~ 198 (229)
+|++ |+.+.+..|..+...
T Consensus 82 ~f~~--G~~v~~~~G~~~~~~ 100 (113)
T cd02957 82 VYKN--GELIDNIVGFEELGG 100 (113)
T ss_pred EEEC--CEEEEEEecHHHhCC
Confidence 9998 688889988765433
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.81 E-value=1.3e-19 Score=135.68 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=77.7
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcCcHHHHHHCCCCcccEEEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~ 179 (229)
.+|.+.++|.+.+ ..+++++|+|||+||++|+.+.|.+.++++++++ +.|+.+|+| +.+++++|+|+++||+++|
T Consensus 2 ~~i~~~~~~~~~i--~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 2 VEINNQEEWEELL--SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred eEccCHHHHHHHH--ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 3578889999977 4688999999999999999999999999999874 789999999 7889999999999999999
Q ss_pred ECCCceEEEEEecc
Q 026997 180 RGAHGRVCIEEVGL 193 (229)
Q Consensus 180 ~~g~g~~~~~~~G~ 193 (229)
++ |+.+.+..|.
T Consensus 79 ~~--g~~~~~~~G~ 90 (102)
T cd02948 79 KN--GELVAVIRGA 90 (102)
T ss_pred EC--CEEEEEEecC
Confidence 87 6788888884
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=6.1e-19 Score=131.72 Aligned_cols=92 Identities=25% Similarity=0.474 Sum_probs=78.3
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
++.++ +.++|.+.+.. .+++++|+|||+||++|+.+.|.++++++++.+ +.|+.||++++++++++|+|.++||+++
T Consensus 2 ~v~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 34455 45678887764 567999999999999999999999999999865 8999999999999999999999999999
Q ss_pred EECCCceEEEEEeccc
Q 026997 179 YRGAHGRVCIEEVGLA 194 (229)
Q Consensus 179 ~~~g~g~~~~~~~G~~ 194 (229)
|++| ++...+..|..
T Consensus 80 ~~~g-~~~~~~~~G~~ 94 (104)
T cd03004 80 YPGN-ASKYHSYNGWH 94 (104)
T ss_pred EcCC-CCCceEccCCC
Confidence 9886 45667777754
No 12
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=4.3e-19 Score=132.74 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=73.5
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc-CcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 109 ~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d-~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
.+.+.+...++++++|+|||+||++|+.+.|.+++++++++++.|+.||.+ ++++++++|+|.++||+++|++| ..
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g---~~ 84 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST---PR 84 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC---ce
Confidence 455566667899999999999999999999999999999999999999998 79999999999999999999875 45
Q ss_pred EEEecccC
Q 026997 188 IEEVGLAE 195 (229)
Q Consensus 188 ~~~~G~~~ 195 (229)
.+..|..+
T Consensus 85 ~~~~G~~~ 92 (100)
T cd02999 85 VRYNGTRT 92 (100)
T ss_pred eEecCCCC
Confidence 66666543
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=6.2e-19 Score=131.22 Aligned_cols=89 Identities=19% Similarity=0.363 Sum_probs=75.5
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
++.+++ .++|.+.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|+.||+++++.++++|+|.++||+++
T Consensus 2 ~~~~l~-~~~f~~~v--~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLD-RGDFDAAV--NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcC-HhhHHHHh--cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 455664 56788777 3568999999999999999999999999999976 8999999999999999999999999999
Q ss_pred EECCCceEEEEEecc
Q 026997 179 YRGAHGRVCIEEVGL 193 (229)
Q Consensus 179 ~~~g~g~~~~~~~G~ 193 (229)
|++| +...+..|.
T Consensus 79 ~~~g--~~~~~~~G~ 91 (101)
T cd03003 79 FPSG--MNPEKYYGD 91 (101)
T ss_pred EcCC--CCcccCCCC
Confidence 9875 334455553
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=8.6e-19 Score=128.94 Aligned_cols=85 Identities=24% Similarity=0.339 Sum_probs=74.9
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 109 ~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+|.+.+.+..++++||+||++||++|+.+.|.++++++.+++ +.|+.||++++++++++|+|.++||+++|++ |+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--g~~~ 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA--GQPV 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeC--CEEe
Confidence 466777666688999999999999999999999999999875 8899999999999999999999999999986 6677
Q ss_pred EEEecccC
Q 026997 188 IEEVGLAE 195 (229)
Q Consensus 188 ~~~~G~~~ 195 (229)
.+..|..+
T Consensus 80 ~~~~g~~~ 87 (96)
T cd02956 80 DGFQGAQP 87 (96)
T ss_pred eeecCCCC
Confidence 77777543
No 15
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.79 E-value=1.3e-18 Score=133.16 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHH-HHCCCCcccE
Q 026997 99 PNMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMC-YSLNVHVLPF 175 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~-~~~~I~~~Pt 175 (229)
+++.++++ +.|.+.+. ...++++||+|||+||++|+.+.|.++++++++++ +.|++||++++.+++ ++|+|.++||
T Consensus 9 ~~v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 35566655 44665522 35789999999999999999999999999999986 899999999999999 5899999999
Q ss_pred EEEEECCCceEEEEEeccc
Q 026997 176 FRFYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~~ 194 (229)
|++|++|+ ...+..|..
T Consensus 88 l~lf~~g~--~~~~y~G~~ 104 (113)
T cd03006 88 IHLYYRSR--GPIEYKGPM 104 (113)
T ss_pred EEEEECCc--cceEEeCCC
Confidence 99999864 334455543
No 16
>PTZ00051 thioredoxin; Provisional
Probab=99.79 E-value=1.5e-18 Score=128.05 Aligned_cols=90 Identities=24% Similarity=0.503 Sum_probs=82.0
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
+.++++.+++.+.+ ..+++++|+||++||++|+.+.|.+.+++++++++.|+.+|++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~--~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHH--hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 56789999998877 4678999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEEeccc
Q 026997 181 GAHGRVCIEEVGLA 194 (229)
Q Consensus 181 ~g~g~~~~~~~G~~ 194 (229)
+ |+.+.+..|..
T Consensus 80 ~--g~~~~~~~G~~ 91 (98)
T PTZ00051 80 N--GSVVDTLLGAN 91 (98)
T ss_pred C--CeEEEEEeCCC
Confidence 7 67888888853
No 17
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=3e-18 Score=140.67 Aligned_cols=97 Identities=25% Similarity=0.424 Sum_probs=86.9
Q ss_pred CCCeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEE
Q 026997 98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (229)
Q Consensus 98 ~~~~~~i~s~e~~~~~l~~~-~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~ 176 (229)
...+.+|++.++|.+.+... .+.+|||+||++||++|+.+.|.+.+++++|+++.|++||++++ .++.+|+|.++|||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 45788999988899888643 34699999999999999999999999999999999999999988 89999999999999
Q ss_pred EEEECCCceEEEEEecccCCC
Q 026997 177 RFYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 177 l~~~~g~g~~~~~~~G~~~~~ 197 (229)
++|++ |+.+.+.+|+....
T Consensus 140 llyk~--G~~v~~~vG~~~~~ 158 (175)
T cd02987 140 LVYKG--GELIGNFVRVTEDL 158 (175)
T ss_pred EEEEC--CEEEEEEechHHhc
Confidence 99998 78899999987633
No 18
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.77 E-value=2.1e-18 Score=126.82 Aligned_cols=87 Identities=28% Similarity=0.489 Sum_probs=77.8
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHh-CCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCc
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~-~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g 184 (229)
+.+++.+.+....+++++|+||++||++|+.+.|.+++++++ ++++.|+.+|.+++++++++|+|.++||+++|++ |
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~--g 78 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN--G 78 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEEC--C
Confidence 357788888765579999999999999999999999999999 6679999999999999999999999999999986 6
Q ss_pred eEEEEEeccc
Q 026997 185 RVCIEEVGLA 194 (229)
Q Consensus 185 ~~~~~~~G~~ 194 (229)
+.+.+..|..
T Consensus 79 ~~~~~~~g~~ 88 (97)
T cd02984 79 TIVDRVSGAD 88 (97)
T ss_pred EEEEEEeCCC
Confidence 7788888864
No 19
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.7e-19 Score=150.38 Aligned_cols=99 Identities=31% Similarity=0.464 Sum_probs=87.9
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEE
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~ 179 (229)
.++.|.++++|...+..++.+.++|+|+|+|||||+.+.|.+..|+.+|++..|++||+|+++..+..+||..+|||++|
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 36789999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEEecccCCCCCC
Q 026997 180 RGAHGRVCIEEVGLAEVPPPH 200 (229)
Q Consensus 180 ~~g~g~~~~~~~G~~~~~~~~ 200 (229)
++| .-++...|-....+..
T Consensus 82 ~ng--~kid~~qGAd~~gLe~ 100 (288)
T KOG0908|consen 82 RNG--VKIDQIQGADASGLEE 100 (288)
T ss_pred ecC--eEeeeecCCCHHHHHH
Confidence 994 5556666654433333
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=7.3e-18 Score=124.36 Aligned_cols=87 Identities=29% Similarity=0.545 Sum_probs=76.9
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcHHHHHHCCCCcccEEEEEECCC
Q 026997 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 105 ~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
.+.++|.+.+.+ .++++||+||++||++|+.+.|.+.+++++++ ++.|+.||+++++.++++|+|.++||+++|++
T Consensus 4 lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~-- 80 (103)
T PF00085_consen 4 LTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN-- 80 (103)
T ss_dssp ESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET--
T ss_pred CCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC--
Confidence 345778888854 58999999999999999999999999999998 79999999999999999999999999999998
Q ss_pred ceEEEEEeccc
Q 026997 184 GRVCIEEVGLA 194 (229)
Q Consensus 184 g~~~~~~~G~~ 194 (229)
|+...+..|..
T Consensus 81 g~~~~~~~g~~ 91 (103)
T PF00085_consen 81 GKEVKRYNGPR 91 (103)
T ss_dssp TEEEEEEESSS
T ss_pred CcEEEEEECCC
Confidence 55555777653
No 21
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.76 E-value=1.1e-17 Score=134.27 Aligned_cols=94 Identities=16% Similarity=0.308 Sum_probs=81.7
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcCcHHHHHHCCCCc----
Q 026997 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV---- 172 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~I~~---- 172 (229)
..+.+++. ++|.+.+....++++||+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|..
T Consensus 28 ~~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 28 EHIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 45666664 678888866667899999999999999999999999999986 49999999999999999999998
Q ss_pred --ccEEEEEECCCceEEEEEecccC
Q 026997 173 --LPFFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 173 --~Pt~l~~~~g~g~~~~~~~G~~~ 195 (229)
+||+++|++ |+.+.+..|...
T Consensus 107 ~~~PT~ilf~~--Gk~v~r~~G~~~ 129 (152)
T cd02962 107 KQLPTIILFQG--GKEVARRPYYND 129 (152)
T ss_pred CCCCEEEEEEC--CEEEEEEecccc
Confidence 999999987 788888887443
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.75 E-value=9.9e-18 Score=127.46 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=75.8
Q ss_pred CHhHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 106 SAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 106 s~e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
+.++|.+.+. ...+++++|+|||+||++|+.+.|.+++++++++ ++.|+.||+++++.++++|+|.++||+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~- 88 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN- 88 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC-
Confidence 4566766554 3468999999999999999999999999999986 48999999999999999999999999999987
Q ss_pred CceEEEEEecccC
Q 026997 183 HGRVCIEEVGLAE 195 (229)
Q Consensus 183 ~g~~~~~~~G~~~ 195 (229)
|+.+.+..|..+
T Consensus 89 -g~~~~~~~G~~~ 100 (111)
T cd02963 89 -GQVTFYHDSSFT 100 (111)
T ss_pred -CEEEEEecCCCC
Confidence 567777777553
No 23
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.1e-18 Score=147.25 Aligned_cols=94 Identities=22% Similarity=0.427 Sum_probs=82.3
Q ss_pred CeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
.+.++++.+ |.+.+. .+..+||||+||+|||++|+.+.|.+++++.+|.+ +.+++||||+++.++.+|+|+++||++
T Consensus 24 ~I~dvT~an-fe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDVTEAN-FEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceechHhH-HHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 466777654 555555 55667999999999999999999999999999987 999999999999999999999999999
Q ss_pred EEECCCceEEEEEecccCC
Q 026997 178 FYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 178 ~~~~g~g~~~~~~~G~~~~ 196 (229)
.|++ |++++.+.|....
T Consensus 103 af~d--GqpVdgF~G~qPe 119 (304)
T COG3118 103 AFKD--GQPVDGFQGAQPE 119 (304)
T ss_pred EeeC--CcCccccCCCCcH
Confidence 9999 7888888887765
No 24
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.74 E-value=1.5e-17 Score=126.41 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=74.9
Q ss_pred hHHHHHHHccCCCeEEEEEECCC--ChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCc
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~W--C~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g 184 (229)
.+|++.+ ..+.++||+||++| |++|+.+.|.+++++++|++ +.|++||++++++++.+|+|.++||+++|++ |
T Consensus 18 ~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkd--G 93 (111)
T cd02965 18 ATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRD--G 93 (111)
T ss_pred ccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEEC--C
Confidence 5566555 46778999999997 99999999999999999988 7899999999999999999999999999998 6
Q ss_pred eEEEEEecccC
Q 026997 185 RVCIEEVGLAE 195 (229)
Q Consensus 185 ~~~~~~~G~~~ 195 (229)
+.+.+..|...
T Consensus 94 k~v~~~~G~~~ 104 (111)
T cd02965 94 RYVGVLAGIRD 104 (111)
T ss_pred EEEEEEeCccC
Confidence 78888888543
No 25
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.74 E-value=1.7e-17 Score=128.19 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=77.3
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChh--Hh--hhHHHHHHHHHhC--C-CcEEEEEECcCcHHHHHHCCCCc
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGG--CK--ALHPKICQLAEMN--P-DVQFLQVNYEEHKSMCYSLNVHV 172 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~--Ck--~~~p~l~~la~~~--~-~v~f~~Vd~d~~~~l~~~~~I~~ 172 (229)
.+..++ .++|.+.+.+ .+.++|++||++||++ |+ .+.|.+.+++.++ + ++.|++||+|++++++++|+|.+
T Consensus 10 ~v~~lt-~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLN-EKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeCC-hhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 455555 4778887765 6789999999999987 99 8999999999987 4 59999999999999999999999
Q ss_pred ccEEEEEECCCceEEEEEecccC
Q 026997 173 LPFFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 173 ~Pt~l~~~~g~g~~~~~~~G~~~ 195 (229)
+||+++|++| +.+. ..|..+
T Consensus 88 iPTl~lfk~G--~~v~-~~G~~~ 107 (120)
T cd03065 88 EDSIYVFKDD--EVIE-YDGEFA 107 (120)
T ss_pred ccEEEEEECC--EEEE-eeCCCC
Confidence 9999999995 4565 767554
No 26
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=4.6e-17 Score=122.61 Aligned_cols=92 Identities=17% Similarity=0.436 Sum_probs=79.2
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
..+.+++. ++|.+.+.. .+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++.++.++++|+|.++||++
T Consensus 3 ~~v~~~~~-~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTD-DSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeCh-hhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45677755 677776653 678999999999999999999999999999965 899999999999999999999999999
Q ss_pred EEECCCceEEEEEeccc
Q 026997 178 FYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 178 ~~~~g~g~~~~~~~G~~ 194 (229)
+|++ |+...+..|..
T Consensus 81 ~~~~--G~~~~~~~G~~ 95 (109)
T PRK09381 81 LFKN--GEVAATKVGAL 95 (109)
T ss_pred EEeC--CeEEEEecCCC
Confidence 9986 66777777754
No 27
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.73 E-value=2.7e-17 Score=123.91 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=72.6
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhC----C---CcEEEEEECcCcHHHHHHCCCCcc
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----P---DVQFLQVNYEEHKSMCYSLNVHVL 173 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~----~---~v~f~~Vd~d~~~~l~~~~~I~~~ 173 (229)
+.+++ .++|.+.+ ..+++++|+|||+||++|+.+.|.++++++.+ + .+.|+.||++++.+++++|+|+++
T Consensus 3 v~~l~-~~~f~~~i--~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 79 (108)
T cd02996 3 IVSLT-SGNIDDIL--QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79 (108)
T ss_pred eEEcC-HhhHHHHH--hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence 45554 56788876 45789999999999999999999999998763 2 389999999999999999999999
Q ss_pred cEEEEEECCCceEEEEEecc
Q 026997 174 PFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 174 Pt~l~~~~g~g~~~~~~~G~ 193 (229)
||+++|++|+. ......|.
T Consensus 80 Ptl~~~~~g~~-~~~~~~g~ 98 (108)
T cd02996 80 PTLKLFRNGMM-MKREYRGQ 98 (108)
T ss_pred CEEEEEeCCcC-cceecCCC
Confidence 99999998642 23444443
No 28
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.72 E-value=4.1e-17 Score=122.41 Aligned_cols=79 Identities=25% Similarity=0.553 Sum_probs=69.6
Q ss_pred EeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcC--cHHHHHHCCCCcccEEEEE
Q 026997 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 103 ~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~--~~~l~~~~~I~~~Pt~l~~ 179 (229)
+++ .++|.+.+.+ .+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|+++ +.+++++|+|.++||+++|
T Consensus 4 ~l~-~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 4 ELT-PKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred Ecc-hhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 444 4567777764 678899999999999999999999999999875 8899999998 8999999999999999999
Q ss_pred ECCC
Q 026997 180 RGAH 183 (229)
Q Consensus 180 ~~g~ 183 (229)
++|+
T Consensus 82 ~~~~ 85 (109)
T cd03002 82 RPPK 85 (109)
T ss_pred eCCC
Confidence 8875
No 29
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.71 E-value=1.3e-16 Score=118.42 Aligned_cols=86 Identities=16% Similarity=0.336 Sum_probs=70.8
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
+.+++ .++|.+.+ .++ ++|+|||+||++|+.+.|.++++++.++ ++.|+.||+++++.++++|+|.++||+++
T Consensus 3 v~~l~-~~~f~~~~---~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 3 VVELT-DSNWTLVL---EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred eEEcC-hhhHHHHh---CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 45564 56787765 233 7899999999999999999999998865 48999999999999999999999999999
Q ss_pred EECCCceEEEEEeccc
Q 026997 179 YRGAHGRVCIEEVGLA 194 (229)
Q Consensus 179 ~~~g~g~~~~~~~G~~ 194 (229)
|++| ++ ....|..
T Consensus 78 ~~~g--~~-~~~~G~~ 90 (101)
T cd02994 78 AKDG--VF-RRYQGPR 90 (101)
T ss_pred eCCC--CE-EEecCCC
Confidence 9875 33 4555543
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=1.1e-16 Score=118.46 Aligned_cols=85 Identities=24% Similarity=0.452 Sum_probs=72.3
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcCcHHHHHHCCCCcccEEEEEEC
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~ 181 (229)
+.++|.+.+. .+ +++|+||++||++|+.+.|.+.++++++. ++.|+.||++++..++++|+|.++||+++|++
T Consensus 6 ~~~~f~~~~~--~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 6 TEDNFDHHIA--EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred CHHHHHHHhh--cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence 3467888773 23 59999999999999999999999999875 48999999999999999999999999999987
Q ss_pred CCceEEEEEecccC
Q 026997 182 AHGRVCIEEVGLAE 195 (229)
Q Consensus 182 g~g~~~~~~~G~~~ 195 (229)
| +.+.+..|..+
T Consensus 83 g--~~~~~~~G~~~ 94 (102)
T cd03005 83 G--EKVDKYKGTRD 94 (102)
T ss_pred C--CeeeEeeCCCC
Confidence 5 46667777554
No 31
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.70 E-value=4.3e-17 Score=121.90 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=73.2
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHH---HHHHHhCC-CcEEEEEECcC----cHHHHHHCCCCcccEEEEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE----HKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~f~~Vd~d~----~~~l~~~~~I~~~Pt~l~~ 179 (229)
++|.+.+ ..++++||+||++||++|+.+.+.+ .++++.+. ++.++.||+++ ..+++++|+|.++||++||
T Consensus 2 ~~~~~~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQAL--AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHH--HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 4566666 4678999999999999999999988 57887777 69999999987 5789999999999999999
Q ss_pred ECCCceEEEEEecccCC
Q 026997 180 RGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 180 ~~g~g~~~~~~~G~~~~ 196 (229)
++|+|+...+..|+.+.
T Consensus 80 ~~~~g~~~~~~~G~~~~ 96 (104)
T cd02953 80 GPGGEPEPLRLPGFLTA 96 (104)
T ss_pred CCCCCCCCcccccccCH
Confidence 76568887777776653
No 32
>PRK10996 thioredoxin 2; Provisional
Probab=99.70 E-value=1.8e-16 Score=125.33 Aligned_cols=86 Identities=26% Similarity=0.515 Sum_probs=75.5
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCc
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g 184 (229)
+.+++.+.+ ..+++++|+||++||++|+.+.|.+.++++++. ++.|+.+|++++++++++|+|.++||+++|++ |
T Consensus 41 ~~~~~~~~i--~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~--G 116 (139)
T PRK10996 41 TGETLDKLL--QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKN--G 116 (139)
T ss_pred CHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC--C
Confidence 456777766 358999999999999999999999999999876 49999999999999999999999999999986 6
Q ss_pred eEEEEEecccC
Q 026997 185 RVCIEEVGLAE 195 (229)
Q Consensus 185 ~~~~~~~G~~~ 195 (229)
+.+....|...
T Consensus 117 ~~v~~~~G~~~ 127 (139)
T PRK10996 117 QVVDMLNGAVP 127 (139)
T ss_pred EEEEEEcCCCC
Confidence 77888777543
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.70 E-value=1.8e-16 Score=117.49 Aligned_cols=81 Identities=22% Similarity=0.466 Sum_probs=70.2
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~ 179 (229)
+.++ +.+++.+.+.. .+++++|+||++||++|+.+.|.+.++++++++ +.|+.+|++++++++++|+|.++|++++|
T Consensus 2 v~~l-~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVEL-TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEc-CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 3444 44677777754 567899999999999999999999999998864 89999999999999999999999999999
Q ss_pred ECCC
Q 026997 180 RGAH 183 (229)
Q Consensus 180 ~~g~ 183 (229)
++|+
T Consensus 80 ~~~~ 83 (103)
T cd03001 80 GAGK 83 (103)
T ss_pred CCCC
Confidence 8763
No 34
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.69 E-value=2.4e-16 Score=131.22 Aligned_cols=95 Identities=25% Similarity=0.394 Sum_probs=81.1
Q ss_pred CCCCeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccE
Q 026997 97 LQPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175 (229)
Q Consensus 97 ~~~~~~~i~s~e~~~~~l~~~-~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt 175 (229)
....+.+|+. ++|.+.+..+ .+.+|||+||++||++|+.+.|.+.+++++|++++|++||+++. ..+|+|.++||
T Consensus 80 ~~G~v~eis~-~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISK-PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCH-HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCE
Confidence 3467888855 6677766543 35699999999999999999999999999999999999999864 58999999999
Q ss_pred EEEEECCCceEEEEEecccCCC
Q 026997 176 FRFYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~~~~~ 197 (229)
+++|++ |..+.+.+|+....
T Consensus 156 lliyk~--G~~v~~ivG~~~~g 175 (192)
T cd02988 156 ILVYRN--GDIVKQFIGLLEFG 175 (192)
T ss_pred EEEEEC--CEEEEEEeCchhhC
Confidence 999999 78999999987643
No 35
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=2.1e-16 Score=125.49 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=72.5
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCc--HHHHHHCCCCcccEEEEEECCCc
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH--KSMCYSLNVHVLPFFRFYRGAHG 184 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~--~~l~~~~~I~~~Pt~l~~~~g~g 184 (229)
.++.+.+ ..++++||+|||+||++|+.+.|.+.+++++|.+ +.|+.||+|.. ..++++|+|.++||++||+ .+|
T Consensus 11 ~~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~-~~G 87 (142)
T cd02950 11 TPPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLD-REG 87 (142)
T ss_pred CCHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEEC-CCC
Confidence 4455555 4688999999999999999999999999999865 78888888864 5889999999999999994 348
Q ss_pred eEEEEEecccCC
Q 026997 185 RVCIEEVGLAEV 196 (229)
Q Consensus 185 ~~~~~~~G~~~~ 196 (229)
+++.+..|....
T Consensus 88 ~~v~~~~G~~~~ 99 (142)
T cd02950 88 NEEGQSIGLQPK 99 (142)
T ss_pred CEEEEEeCCCCH
Confidence 899999887643
No 36
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.68 E-value=5.2e-16 Score=115.03 Aligned_cols=89 Identities=22% Similarity=0.431 Sum_probs=73.4
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC---CcEEEEEECcC--cHHHHHHCCCCcccE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE--HKSMCYSLNVHVLPF 175 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~--~~~l~~~~~I~~~Pt 175 (229)
+.++++ +++.+.+. .+++++|+||++||++|+.+.|.++++++.++ .+.++.+|+++ +..++++|+|+++||
T Consensus 2 ~~~l~~-~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt 78 (104)
T cd02997 2 VVHLTD-EDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT 78 (104)
T ss_pred eEEech-HhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence 445543 46777763 45699999999999999999999999998775 38899999998 999999999999999
Q ss_pred EEEEECCCceEEEEEeccc
Q 026997 176 FRFYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~~ 194 (229)
+++|++| +......|..
T Consensus 79 ~~~~~~g--~~~~~~~g~~ 95 (104)
T cd02997 79 FKYFENG--KFVEKYEGER 95 (104)
T ss_pred EEEEeCC--CeeEEeCCCC
Confidence 9999874 4556666644
No 37
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.68 E-value=3.7e-16 Score=119.39 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=70.4
Q ss_pred HHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEEE
Q 026997 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCIE 189 (229)
Q Consensus 110 ~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~ 189 (229)
+.+.+ ..+..++|+||++||++|+.+.|.++++++.++.+.|..+|.+++++++++|+|.++||+++|++|+.....+
T Consensus 15 ~~~~l--~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEM--KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHh--CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 55555 3567799999999999999999999999999877999999999999999999999999999998763222225
Q ss_pred EecccCC
Q 026997 190 EVGLAEV 196 (229)
Q Consensus 190 ~~G~~~~ 196 (229)
..|....
T Consensus 93 ~~G~~~~ 99 (113)
T cd02975 93 YYGLPAG 99 (113)
T ss_pred EEecCch
Confidence 6665443
No 38
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.67 E-value=3.3e-16 Score=120.77 Aligned_cols=85 Identities=14% Similarity=0.298 Sum_probs=74.3
Q ss_pred EeCCHhHHHHHHHccCCCeEEEEEEC-------CCChhHhhhHHHHHHHHHhCC-CcEEEEEECcC-------cHHHHHH
Q 026997 103 EVASAQDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS 167 (229)
Q Consensus 103 ~i~s~e~~~~~l~~~~~k~vlV~F~a-------~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~-------~~~l~~~ 167 (229)
.+.+.++|.+.+...++++++|+||| +||++|+.+.|.+++++++++ ++.|++||+++ +.++..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 46778899999976668999999999 999999999999999999999 69999999976 4689999
Q ss_pred CCCC-cccEEEEEECCCceEEE
Q 026997 168 LNVH-VLPFFRFYRGAHGRVCI 188 (229)
Q Consensus 168 ~~I~-~~Pt~l~~~~g~g~~~~ 188 (229)
|+|. ++||+++|++| ++++.
T Consensus 85 ~~I~~~iPT~~~~~~~-~~l~~ 105 (119)
T cd02952 85 PKLTTGVPTLLRWKTP-QRLVE 105 (119)
T ss_pred cCcccCCCEEEEEcCC-ceecc
Confidence 9999 99999999765 44433
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=1.2e-15 Score=111.87 Aligned_cols=86 Identities=27% Similarity=0.558 Sum_probs=74.0
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCce
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~ 185 (229)
.+++.+.+.. .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|+++++.++++|+|..+|++++|++ |+
T Consensus 3 ~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~--g~ 79 (101)
T TIGR01068 3 DANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN--GK 79 (101)
T ss_pred HHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC--Cc
Confidence 4677777754 56799999999999999999999999998887 49999999999999999999999999999977 45
Q ss_pred EEEEEecccC
Q 026997 186 VCIEEVGLAE 195 (229)
Q Consensus 186 ~~~~~~G~~~ 195 (229)
......|..+
T Consensus 80 ~~~~~~g~~~ 89 (101)
T TIGR01068 80 EVDRSVGALP 89 (101)
T ss_pred EeeeecCCCC
Confidence 5666666543
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=1.5e-15 Score=112.35 Aligned_cols=84 Identities=21% Similarity=0.482 Sum_probs=73.6
Q ss_pred HHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEE
Q 026997 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCI 188 (229)
Q Consensus 110 ~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~ 188 (229)
+...+.+ .+++++|+||++||+.|+.+.|.++++++++++ +.++.+|++++++++++++|.++||+++|++ |+.+.
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~--g~~v~ 81 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKD--KELVK 81 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEEC--CeEEE
Confidence 3444544 788999999999999999999999999999874 8999999999999999999999999999976 67888
Q ss_pred EEecccCC
Q 026997 189 EEVGLAEV 196 (229)
Q Consensus 189 ~~~G~~~~ 196 (229)
+..|....
T Consensus 82 ~~~g~~~~ 89 (97)
T cd02949 82 EISGVKMK 89 (97)
T ss_pred EEeCCccH
Confidence 88886643
No 41
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.66 E-value=7.7e-16 Score=130.92 Aligned_cols=93 Identities=14% Similarity=0.259 Sum_probs=78.6
Q ss_pred CeEEeCCHhHHHHHHHcc---CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccE
Q 026997 100 NMREVASAQDLVESLWHA---GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF 175 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~---~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt 175 (229)
.+.+++ .++|++.+... .+++++|+|||+||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||
T Consensus 31 ~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 31 ALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 455564 56788876532 368999999999999999999999999999986 8999999999999999999999999
Q ss_pred EEEEECCCceEEEEEecccC
Q 026997 176 FRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~~~ 195 (229)
+++|++ |+...+..|..+
T Consensus 110 l~~f~~--G~~v~~~~G~~s 127 (224)
T PTZ00443 110 LLLFDK--GKMYQYEGGDRS 127 (224)
T ss_pred EEEEEC--CEEEEeeCCCCC
Confidence 999987 566766666443
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.66 E-value=8.3e-16 Score=116.26 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=68.7
Q ss_pred eEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcC-cHHHHH-HCCCCcccE
Q 026997 101 MREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE-HKSMCY-SLNVHVLPF 175 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~-~~~l~~-~~~I~~~Pt 175 (229)
+.+++. ++|...+. ...+++++|+||++||++|+.+.|.+.++++.+.+ +.++.||++. +..+++ .|+|.++||
T Consensus 3 v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 444544 46776664 24678999999999999999999999999998864 8999999997 677886 599999999
Q ss_pred EEEEECCCc
Q 026997 176 FRFYRGAHG 184 (229)
Q Consensus 176 ~l~~~~g~g 184 (229)
+++|.+|..
T Consensus 82 i~~f~~~~~ 90 (109)
T cd02993 82 ILFFPKNSR 90 (109)
T ss_pred EEEEcCCCC
Confidence 999987643
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.64 E-value=1.8e-15 Score=111.96 Aligned_cols=89 Identities=27% Similarity=0.408 Sum_probs=71.1
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC---cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
.+++ .++|.+.+.. .+++++|+||++||++|+.+.|.+.++++.+++ +.|+.+|++++ +++..+++.++||+++
T Consensus 3 ~~l~-~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 3 KVVV-GKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEc-hhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 3444 3567776654 468999999999999999999999999998765 89999999987 6888999999999999
Q ss_pred EECCCceEEEEEecc
Q 026997 179 YRGAHGRVCIEEVGL 193 (229)
Q Consensus 179 ~~~g~g~~~~~~~G~ 193 (229)
|.+|+.....+..|.
T Consensus 80 ~~~~~~~~~~~~~g~ 94 (104)
T cd02995 80 FPAGDKSNPIKYEGD 94 (104)
T ss_pred EcCCCcCCceEccCC
Confidence 988652233344443
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=1.2e-15 Score=112.90 Aligned_cols=80 Identities=28% Similarity=0.519 Sum_probs=68.7
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC---CcEEEEEECcC-cHHHHHHCCCCcccEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~-~~~l~~~~~I~~~Pt~l 177 (229)
.++++ +++.+.+. ..+++++|+||++||++|+.+.|.+.++++.++ ++.++.+|+++ +++++++|+|.++|+++
T Consensus 3 ~~l~~-~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 3 VELTD-SNFDKVVG-DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEcch-hcHHHHhc-CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 44544 56777553 356799999999999999999999999999875 48999999999 99999999999999999
Q ss_pred EEECCC
Q 026997 178 FYRGAH 183 (229)
Q Consensus 178 ~~~~g~ 183 (229)
+|++|.
T Consensus 81 ~~~~~~ 86 (105)
T cd02998 81 FFPKGS 86 (105)
T ss_pred EEeCCC
Confidence 998763
No 45
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.63 E-value=3e-15 Score=110.26 Aligned_cols=83 Identities=24% Similarity=0.463 Sum_probs=71.4
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC---cEEEEEECcCcHHHHHHCCCCcccEEEEEECCC
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
.++|.+.+. ++++++|+||++||++|+.+.+.++++++.+.+ +.++.+|+++++.++++|+|.++|++++|++|+
T Consensus 3 ~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 3 ASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred hhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 466777763 788999999999999999999999999998874 999999999999999999999999999998863
Q ss_pred ceEEEEEecc
Q 026997 184 GRVCIEEVGL 193 (229)
Q Consensus 184 g~~~~~~~G~ 193 (229)
. .....|.
T Consensus 81 ~--~~~~~g~ 88 (102)
T TIGR01126 81 K--PVDYEGG 88 (102)
T ss_pred c--ceeecCC
Confidence 3 4455553
No 46
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.63 E-value=1.9e-15 Score=115.57 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=67.3
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC---C-cEEEEEECc--CcHHHHHHCCCCcccE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---D-VQFLQVNYE--EHKSMCYSLNVHVLPF 175 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~---~-v~f~~Vd~d--~~~~l~~~~~I~~~Pt 175 (229)
.++ +.++|.+.+.+ .+++++|+||++||++|+.+.|.+++++++++ + +.|+.+|++ ++++++++|+|+++||
T Consensus 4 ~~l-~~~~f~~~i~~-~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 4 IVL-DAASFNSALLG-SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred EEC-CHHhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 344 45678877765 45899999999999999999999999998764 2 889999975 4778999999999999
Q ss_pred EEEEECCC
Q 026997 176 FRFYRGAH 183 (229)
Q Consensus 176 ~l~~~~g~ 183 (229)
+++|++|+
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99998763
No 47
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.62 E-value=1.7e-15 Score=113.33 Aligned_cols=72 Identities=21% Similarity=0.456 Sum_probs=62.7
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
++|.+ + .++++++|+||++||++|+.+.|.++++++++. ++.++.+|++++++++++|+|.++||+++|++|
T Consensus 7 ~~~~~-~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKD-V--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhh-h--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 45554 3 246799999999999999999999999999873 388999999999999999999999999999653
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=4e-15 Score=108.28 Aligned_cols=84 Identities=25% Similarity=0.463 Sum_probs=70.5
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhC---CCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCC
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~---~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
.++|.+.+. ++++++|+||++||++|+.+.|.+.++++.+ .++.|+.+|++++..++++|+|.++||+++|+++
T Consensus 5 ~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~- 81 (101)
T cd02961 5 DDNFDELVK--DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG- 81 (101)
T ss_pred HHHHHHHHh--CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC-
Confidence 467777774 3459999999999999999999999999988 4599999999999999999999999999999775
Q ss_pred ceEEEEEecc
Q 026997 184 GRVCIEEVGL 193 (229)
Q Consensus 184 g~~~~~~~G~ 193 (229)
++...+..|.
T Consensus 82 ~~~~~~~~g~ 91 (101)
T cd02961 82 SKEPVKYEGP 91 (101)
T ss_pred CcccccCCCC
Confidence 2444444443
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=4.2e-15 Score=114.74 Aligned_cols=87 Identities=21% Similarity=0.312 Sum_probs=70.1
Q ss_pred HhHHHHHHHccCC-CeEEEEEECCCChhHhhhHHHHH---HHHHhCC-CcEEEEEECcCc-------------HHHHHHC
Q 026997 107 AQDLVESLWHAGD-KLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEH-------------KSMCYSL 168 (229)
Q Consensus 107 ~e~~~~~l~~~~~-k~vlV~F~a~WC~~Ck~~~p~l~---~la~~~~-~v~f~~Vd~d~~-------------~~l~~~~ 168 (229)
.+++.+.+ ..+ ++++|+||++||++|+.+.|.+. ++.+.+. ++.++.||++++ .+++.+|
T Consensus 3 ~~~~~~a~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 3 YEDLAEAA--ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHH--HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 35566666 356 89999999999999999999885 5555554 488999998864 7899999
Q ss_pred CCCcccEEEEEECCCceEEEEEecccC
Q 026997 169 NVHVLPFFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 169 ~I~~~Pt~l~~~~g~g~~~~~~~G~~~ 195 (229)
+|.++||++||.++.|+++.+..|...
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~ 107 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLP 107 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCC
Confidence 999999999996533788888888754
No 50
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.59 E-value=1.4e-14 Score=112.21 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=67.1
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH-----------HHHHHCC----C
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------SMCYSLN----V 170 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----------~l~~~~~----I 170 (229)
+.+++.+.+ ..++.++|+||++||++|+.+.|.+.+++++ .++.|+.||+|.+. ++.++|+ |
T Consensus 12 t~~~~~~~i--~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i 88 (122)
T TIGR01295 12 TVVRALEAL--DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF 88 (122)
T ss_pred CHHHHHHHH--HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC
Confidence 446788878 4577899999999999999999999999998 45788999988543 4556665 5
Q ss_pred CcccEEEEEECCCceEEEEEecc
Q 026997 171 HVLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 171 ~~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
.++||+++|++ |+.+.+..|.
T Consensus 89 ~~~PT~v~~k~--Gk~v~~~~G~ 109 (122)
T TIGR01295 89 MGTPTFVHITD--GKQVSVRCGS 109 (122)
T ss_pred CCCCEEEEEeC--CeEEEEEeCC
Confidence 56999999999 6677777774
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=141.76 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=93.5
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcCcHHHHHHCCCCccc
Q 026997 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLP 174 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~I~~~P 174 (229)
..+.++++ +.|.+.| ..+..++|.||||||++|+.+.|.+++.+.... .+.+++||++++.++|.+|+|.++|
T Consensus 25 ~~Vl~Lt~-dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 25 EDVLVLTK-DNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cceEEEec-ccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 35555555 6688888 578899999999999999999999998887653 4899999999999999999999999
Q ss_pred EEEEEECCCceEEEEEecccCCCCCCCCCCCCCCCCCCccccccc
Q 026997 175 FFRFYRGAHGRVCIEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEI 219 (229)
Q Consensus 175 t~l~~~~g~g~~~~~~~G~~~~~~~~~l~~~~~p~p~~~~~~~e~ 219 (229)
|+.+|++|.- ...+..+.........+++...|.+....+..+.
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a 145 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEA 145 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHH
Confidence 9999999643 3445555555556666788888888777755543
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.58 E-value=2.7e-14 Score=101.85 Aligned_cols=83 Identities=35% Similarity=0.650 Sum_probs=71.3
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEE
Q 026997 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCI 188 (229)
Q Consensus 109 ~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~ 188 (229)
+|.+.+. .+++++|+||++||+.|+.+.+.+.++++.++++.|+.+|++++.+++++|++.++|++++|++ |+...
T Consensus 2 ~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~--g~~~~ 77 (93)
T cd02947 2 EFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKN--GKEVD 77 (93)
T ss_pred chHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEEC--CEEEE
Confidence 3555563 3489999999999999999999999999988889999999999999999999999999999987 45666
Q ss_pred EEecccC
Q 026997 189 EEVGLAE 195 (229)
Q Consensus 189 ~~~G~~~ 195 (229)
...|...
T Consensus 78 ~~~g~~~ 84 (93)
T cd02947 78 RVVGADP 84 (93)
T ss_pred EEecCCC
Confidence 6666543
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.56 E-value=2e-14 Score=133.46 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=73.1
Q ss_pred CCeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcCcH-HHH-HHCCCCcc
Q 026997 99 PNMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-SMC-YSLNVHVL 173 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~-~l~-~~~~I~~~ 173 (229)
+.+.+++. ++|.+.+. ...++++||+|||+||++|+.+.|.|++++++|.+ +.|+.||+|.+. .++ ++|+|.++
T Consensus 351 ~~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 351 NNVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 35666555 56888775 46789999999999999999999999999999864 899999999753 454 78999999
Q ss_pred cEEEEEECCCceEEE
Q 026997 174 PFFRFYRGAHGRVCI 188 (229)
Q Consensus 174 Pt~l~~~~g~g~~~~ 188 (229)
|||+||++|+.+.+.
T Consensus 430 PTii~Fk~g~~~~~~ 444 (463)
T TIGR00424 430 PTILFFPKHSSRPIK 444 (463)
T ss_pred ceEEEEECCCCCcee
Confidence 999999998544433
No 54
>PTZ00062 glutaredoxin; Provisional
Probab=99.56 E-value=2.2e-14 Score=120.36 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=76.1
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCc
Q 026997 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (229)
Q Consensus 105 ~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g 184 (229)
.+.+++.+.+.. ....+|++|||+||++|+.+.|.+.+++++|+++.|+.||.+ |+|.++|||+||++ |
T Consensus 4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~--g 72 (204)
T PTZ00062 4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQN--S 72 (204)
T ss_pred CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEEC--C
Confidence 466888888753 336799999999999999999999999999999999999977 99999999999998 6
Q ss_pred eEEEEEecccCCCCCCCCCCCCC
Q 026997 185 RVCIEEVGLAEVPPPHSIPNLPL 207 (229)
Q Consensus 185 ~~~~~~~G~~~~~~~~~l~~~~~ 207 (229)
+.+.+..|.........+.+..-
T Consensus 73 ~~i~r~~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 73 QLINSLEGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred EEEeeeeCCCHHHHHHHHHHHcC
Confidence 67888887665555555544433
No 55
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.53 E-value=3.9e-14 Score=108.94 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=64.2
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcH-HHHHHCCCCc--ccEEEEEECCCceEEEEEec
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-SMCYSLNVHV--LPFFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~-~l~~~~~I~~--~Pt~l~~~~g~g~~~~~~~G 192 (229)
.+++++||+|||+||++|+.+.|.+.+..+.+. +..|+.||++.+. ...+.|++.+ +||++|| +.+|++..+.++
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~-~~~Gk~~~~~~~ 95 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL-DPSGDVHPEIIN 95 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEE-CCCCCCchhhcc
Confidence 468999999999999999999999998766442 3567777777654 4567899987 9999999 444777776666
Q ss_pred ccCCCCCCCC
Q 026997 193 LAEVPPPHSI 202 (229)
Q Consensus 193 ~~~~~~~~~l 202 (229)
.........+
T Consensus 96 ~~~~~~~~~f 105 (117)
T cd02959 96 KKGNPNYKYF 105 (117)
T ss_pred CCCCcccccc
Confidence 5555444444
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.53 E-value=6.8e-14 Score=129.86 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECc-CcHHHHH-HCCCCcc
Q 026997 99 PNMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-EHKSMCY-SLNVHVL 173 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d-~~~~l~~-~~~I~~~ 173 (229)
+.+.+++. ++|.+.+. ...++++||+|||+||++|+.|.|.+.+++++|.+ +.|++||++ .+.++++ +|+|.++
T Consensus 345 ~~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 345 QNVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 35555555 56777764 45789999999999999999999999999999864 999999999 7888886 6999999
Q ss_pred cEEEEEECCCceEEEE
Q 026997 174 PFFRFYRGAHGRVCIE 189 (229)
Q Consensus 174 Pt~l~~~~g~g~~~~~ 189 (229)
|||+||++|..+.+.+
T Consensus 424 PTil~f~~g~~~~v~Y 439 (457)
T PLN02309 424 PTILLFPKNSSRPIKY 439 (457)
T ss_pred eEEEEEeCCCCCeeec
Confidence 9999999876554443
No 57
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.47 E-value=2e-13 Score=130.50 Aligned_cols=95 Identities=21% Similarity=0.363 Sum_probs=78.4
Q ss_pred CeEEeCCHhHHHHHHHc--cCCCeEEEEEECCCChhHhhhHHHH---HHHHHhCCCcEEEEEECcC----cHHHHHHCCC
Q 026997 100 NMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYEE----HKSMCYSLNV 170 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~--~~~k~vlV~F~a~WC~~Ck~~~p~l---~~la~~~~~v~f~~Vd~d~----~~~l~~~~~I 170 (229)
..+++.+.+++++.+.+ .++|+|+|+|||+||++|+.+++.+ .++.++++++.++++|+++ +.+++++|+|
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 56788899999988864 3578999999999999999999976 6788888889999999985 4688999999
Q ss_pred CcccEEEEEECCCceE--EEEEecccC
Q 026997 171 HVLPFFRFYRGAHGRV--CIEEVGLAE 195 (229)
Q Consensus 171 ~~~Pt~l~~~~g~g~~--~~~~~G~~~ 195 (229)
.++||+++|+. +|+. ..+..|..+
T Consensus 533 ~g~Pt~~~~~~-~G~~i~~~r~~G~~~ 558 (571)
T PRK00293 533 LGLPTILFFDA-QGQEIPDARVTGFMD 558 (571)
T ss_pred CCCCEEEEECC-CCCCcccccccCCCC
Confidence 99999999952 3444 456677554
No 58
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.47 E-value=6.9e-13 Score=103.10 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=68.6
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHH---HHHHHh-CCCcEEEEEECcCcHHHHH--------HCCCCcccE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEM-NPDVQFLQVNYEEHKSMCY--------SLNVHVLPF 175 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l---~~la~~-~~~v~f~~Vd~d~~~~l~~--------~~~I~~~Pt 175 (229)
+.+.... ..+|+|+|+|+++||+.|+.|.+.+ .++++. +.++.++.+|.++++++++ .|++.++||
T Consensus 6 eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 6 EAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 4444434 5789999999999999999998743 255555 4578999999998887765 358999999
Q ss_pred EEEEECCCceEEEEEecccCCCC
Q 026997 176 FRFYRGAHGRVCIEEVGLAEVPP 198 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~~~~~~ 198 (229)
++|+ +.+|+++...+++.....
T Consensus 84 ~vfl-~~~G~~~~~~~~~~~~~~ 105 (124)
T cd02955 84 NVFL-TPDLKPFFGGTYFPPEDR 105 (124)
T ss_pred EEEE-CCCCCEEeeeeecCCCCc
Confidence 9999 556999998888765543
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.46 E-value=8.5e-14 Score=128.30 Aligned_cols=87 Identities=21% Similarity=0.468 Sum_probs=72.2
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcCcHHHHHHCCCCcccEEEEEEC
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~ 181 (229)
+.+++.+.+ ..+++++|+|||+||++|+.+.|.+.++++.+. ++.|+.||+++++++|++|+|.++||+++|++
T Consensus 7 ~~~~~~~~i--~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 7 TKDNFDDFI--KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred CHHHHHHHH--hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence 456787777 357799999999999999999999999887653 38999999999999999999999999999988
Q ss_pred CCceEEEEEecccC
Q 026997 182 AHGRVCIEEVGLAE 195 (229)
Q Consensus 182 g~g~~~~~~~G~~~ 195 (229)
|+.. .....|..+
T Consensus 85 g~~~-~~~~~g~~~ 97 (462)
T TIGR01130 85 GEDS-VSDYNGPRD 97 (462)
T ss_pred Cccc-eeEecCCCC
Confidence 6432 445555443
No 60
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.45 E-value=2.9e-13 Score=103.82 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=61.3
Q ss_pred CHhHHHHHHHccCCCeEEEEEEC--CCCh---hHhhhHHHHHHHHHhCCCcEEEEEEC-----cCcHHHHHHCCCC--cc
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFS--PGCG---GCKALHPKICQLAEMNPDVQFLQVNY-----EEHKSMCYSLNVH--VL 173 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a--~WC~---~Ck~~~p~l~~la~~~~~v~f~~Vd~-----d~~~~l~~~~~I~--~~ 173 (229)
+.++|++.+ ..++.+||.||| |||+ +|+.+.|.+.+-+. ++.+++||+ .++.+||++|+|. ++
T Consensus 7 ~~~nF~~~v--~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 7 DTVTFYKVI--PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred ChhhHHHHH--hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 456788877 467889999999 9999 88888887766544 389999999 4678999999999 99
Q ss_pred cEEEEEECCC
Q 026997 174 PFFRFYRGAH 183 (229)
Q Consensus 174 Pt~l~~~~g~ 183 (229)
||+++|++|+
T Consensus 82 PTl~lF~~g~ 91 (116)
T cd03007 82 PVIYLFHGGD 91 (116)
T ss_pred CEEEEEeCCC
Confidence 9999999874
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.44 E-value=1.4e-13 Score=127.99 Aligned_cols=94 Identities=23% Similarity=0.394 Sum_probs=76.2
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC---cEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
+..+. .++|.+.+. ..+++++|+|||+||++|+.+.|.++++++.+.+ +.++.+|++++...+++|+|.++||++
T Consensus 359 v~~l~-~~~f~~~v~-~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 359 VKVVV-GNTFEEIVF-KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred eEEec-ccchHHHHh-cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 44444 466777654 4678999999999999999999999999988754 889999999999999999999999999
Q ss_pred EEECCCceEEEEEecccCCC
Q 026997 178 FYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 178 ~~~~g~g~~~~~~~G~~~~~ 197 (229)
+|++| ++......|..+..
T Consensus 437 ~~~~~-~~~~~~~~G~~~~~ 455 (477)
T PTZ00102 437 FVKAG-ERTPIPYEGERTVE 455 (477)
T ss_pred EEECC-CcceeEecCcCCHH
Confidence 99886 44444566655443
No 62
>PTZ00102 disulphide isomerase; Provisional
Probab=99.43 E-value=1.6e-13 Score=127.64 Aligned_cols=90 Identities=20% Similarity=0.432 Sum_probs=72.9
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhC----CCcEEEEEECcCcHHHHHHCCCCcccE
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPF 175 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~----~~v~f~~Vd~d~~~~l~~~~~I~~~Pt 175 (229)
.+..+ +.++|.+.+ ..+++++|+|||+||++|+.+.|.+.++++.+ .++.|+.||++++.+++++|+|.++||
T Consensus 33 ~v~~l-~~~~f~~~i--~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 33 HVTVL-TDSTFDKFI--TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT 109 (477)
T ss_pred CcEEc-chhhHHHHH--hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccE
Confidence 34444 456777777 35679999999999999999999999888654 359999999999999999999999999
Q ss_pred EEEEECCCceEEEEEecccC
Q 026997 176 FRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~~~ 195 (229)
+++|++|+ .. +..|..+
T Consensus 110 ~~~~~~g~--~~-~y~g~~~ 126 (477)
T PTZ00102 110 IKFFNKGN--PV-NYSGGRT 126 (477)
T ss_pred EEEEECCc--eE-EecCCCC
Confidence 99999863 33 5555443
No 63
>PHA02125 thioredoxin-like protein
Probab=99.42 E-value=1.1e-12 Score=92.91 Aligned_cols=61 Identities=16% Similarity=0.336 Sum_probs=53.1
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEEEEecc
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
+++||++||++|+.+.|.++++. +.++.||.+++.+++++|+|.++||++ + |+.+.+..|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~--g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---N--TSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---C--CEEEEEEeCC
Confidence 78999999999999999998763 468999999999999999999999997 3 5666677775
No 64
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.42 E-value=1.6e-12 Score=100.24 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=64.8
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEE-----------------------CcCcHHHHHHCCCCccc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-----------------------YEEHKSMCYSLNVHVLP 174 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd-----------------------~d~~~~l~~~~~I~~~P 174 (229)
.+++++|+||++||++|+.+.|.++++.+++ ++.++.|+ +|.+..+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 5789999999999999999999999999887 46666665 34566788899999999
Q ss_pred EEEEEECCCceEEEEEecccCCC
Q 026997 175 FFRFYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 175 t~l~~~~g~g~~~~~~~G~~~~~ 197 (229)
+.+++ +.+|+++....|..+..
T Consensus 103 ~~~~l-d~~G~v~~~~~G~~~~~ 124 (127)
T cd03010 103 ETFLI-DGDGIIRYKHVGPLTPE 124 (127)
T ss_pred eEEEE-CCCceEEEEEeccCChH
Confidence 88777 55689999999876643
No 65
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.41 E-value=1.4e-12 Score=104.03 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=58.7
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC---------CcEEEEEECcCc-------------------------H
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEH-------------------------K 162 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~---------~v~f~~Vd~d~~-------------------------~ 162 (229)
.++++++|+|||+||++|+.+.|.+.++.+++. ++.++.|+.|++ .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 368999999999999999999999999876432 478888887632 2
Q ss_pred HHHHHCCCCcccEEEEEECCCceEEEE
Q 026997 163 SMCYSLNVHVLPFFRFYRGAHGRVCIE 189 (229)
Q Consensus 163 ~l~~~~~I~~~Pt~l~~~~g~g~~~~~ 189 (229)
.+++.|+|.++||.+++ +.+|+++..
T Consensus 103 ~l~~~y~v~~iPt~vlI-d~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVL-KPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEE-CCCCcEEee
Confidence 46778999999999999 556888765
No 66
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.40 E-value=8e-13 Score=97.96 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCC--cccEEEEEECCCc
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVH--VLPFFRFYRGAHG 184 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~--~~Pt~l~~~~g~g 184 (229)
++++++.||++||++|+.+.|.+.+++++|.+ +.|+.||+++++.+++.|+|. ++|+++++++.+|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc
Confidence 68999999999999999999999999999976 999999999999999999999 9999999988544
No 67
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.5e-13 Score=125.10 Aligned_cols=85 Identities=28% Similarity=0.428 Sum_probs=67.1
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC---cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCc
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g 184 (229)
++|++.+. ..+|-|||.|||||||||+.+.|.+++|++.|++ +.++++|.+.|. .....|.++|||++|..|..
T Consensus 374 knfd~iv~-de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k 450 (493)
T KOG0190|consen 374 KNFDDIVL-DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHK 450 (493)
T ss_pred cCHHHHhh-ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCCCC
Confidence 44656554 5788999999999999999999999999999874 999999998775 23457888999999988765
Q ss_pred eEEEEEecccC
Q 026997 185 RVCIEEVGLAE 195 (229)
Q Consensus 185 ~~~~~~~G~~~ 195 (229)
+....+.|...
T Consensus 451 ~~pv~y~g~R~ 461 (493)
T KOG0190|consen 451 SNPVIYNGDRT 461 (493)
T ss_pred CCCcccCCCcc
Confidence 54444444443
No 68
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.40 E-value=2.5e-13 Score=118.11 Aligned_cols=85 Identities=20% Similarity=0.423 Sum_probs=69.4
Q ss_pred hHHHHHHH-ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC----cEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 108 QDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 108 e~~~~~l~-~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
+++.+..+ ...+..++|+||||||++|+.++|.++++.-+.++ +++.++|++..+.++.+|+|+++||+.||+++
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC
Confidence 33444444 45678999999999999999999999999877765 88999999999999999999999999999884
Q ss_pred CceEEEEEeccc
Q 026997 183 HGRVCIEEVGLA 194 (229)
Q Consensus 183 ~g~~~~~~~G~~ 194 (229)
....+..|..
T Consensus 111 --~a~dYRG~R~ 120 (468)
T KOG4277|consen 111 --HAIDYRGGRE 120 (468)
T ss_pred --eeeecCCCcc
Confidence 4444444443
No 69
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.39 E-value=2e-12 Score=100.33 Aligned_cols=71 Identities=18% Similarity=0.391 Sum_probs=57.8
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcCc------------------------HHHHHHCC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH------------------------KSMCYSLN 169 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~------------------------~~l~~~~~ 169 (229)
.++++||+||++||++|+.+.|.+.++.+++. ++.++.|++|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 67899999999999999999999998877653 567777777643 35788999
Q ss_pred CCcccEEEEEECCCceEEEE
Q 026997 170 VHVLPFFRFYRGAHGRVCIE 189 (229)
Q Consensus 170 I~~~Pt~l~~~~g~g~~~~~ 189 (229)
|.++|+++++ +.+|+++.+
T Consensus 97 v~~~P~~~li-d~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIIL-DADGEVVTT 115 (131)
T ss_pred CCCCCEEEEE-CCCCCEEcc
Confidence 9999999999 445776654
No 70
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.38 E-value=4.4e-12 Score=110.95 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=65.4
Q ss_pred HHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC-----------cHHHHHHCCCCcccEEEEEECC
Q 026997 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 114 l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-----------~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
+....++++||+||++||++|+.+.|.+.+++++|+ +.++.|++|. +..++++|+|.++||+++++++
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 334468899999999999999999999999999985 6677777664 3578999999999999999764
Q ss_pred CceEEEEEecccC
Q 026997 183 HGRVCIEEVGLAE 195 (229)
Q Consensus 183 ~g~~~~~~~G~~~ 195 (229)
.|++.....|..+
T Consensus 240 ~~~v~~v~~G~~s 252 (271)
T TIGR02740 240 PNQFTPIGFGVMS 252 (271)
T ss_pred CCEEEEEEeCCCC
Confidence 4666555556543
No 71
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.38 E-value=1.5e-12 Score=101.51 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=60.8
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcCc-------------------------HHHHHHC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH-------------------------KSMCYSL 168 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~-------------------------~~l~~~~ 168 (229)
.++++||+||++||++|+.+.|.++++.+++. ++.++.|++|+. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 67999999999999999999999999887654 467777777653 2456779
Q ss_pred CCCcccEEEEEECCCceEEEEEeccc
Q 026997 169 NVHVLPFFRFYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 169 ~I~~~Pt~l~~~~g~g~~~~~~~G~~ 194 (229)
+|.++|+++++ +.+|+++.+.....
T Consensus 96 ~v~~iPt~~li-d~~G~iv~~~~~~~ 120 (132)
T cd02964 96 KVEGIPTLVVL-KPDGDVVTTNARDE 120 (132)
T ss_pred CCCCCCEEEEE-CCCCCEEchhHHHH
Confidence 99999999999 44577776655443
No 72
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.37 E-value=3.2e-12 Score=93.54 Aligned_cols=67 Identities=24% Similarity=0.470 Sum_probs=54.8
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCC---CcEEEEEECcCc-------------------------HHHHHHCCC
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH-------------------------KSMCYSLNV 170 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~~-------------------------~~l~~~~~I 170 (229)
+|+++|+||++||++|+...|.+.++.++|+ ++.|+.|+.|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 599998887743 247889999
Q ss_pred CcccEEEEEECCCceE
Q 026997 171 HVLPFFRFYRGAHGRV 186 (229)
Q Consensus 171 ~~~Pt~l~~~~g~g~~ 186 (229)
.++|++++++ .+|++
T Consensus 81 ~~iP~~~lld-~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLD-PDGKI 95 (95)
T ss_dssp TSSSEEEEEE-TTSBE
T ss_pred CcCCEEEEEC-CCCCC
Confidence 9999999995 34553
No 73
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.37 E-value=3.5e-12 Score=90.66 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 122 VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 122 vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
.+..||++||++|+.+.|.+++++++++. +.++.||++++++++++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 46779999999999999999999998864 8999999999999999999999999975
No 74
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.36 E-value=2.5e-12 Score=88.46 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=53.2
Q ss_pred EEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 122 vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
-++.||++||++|+.+.+.++++++.++++.|..+|++++++++++|+|.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999999988889999999999999999999999999864
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.36 E-value=6.9e-12 Score=105.91 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=63.0
Q ss_pred CCCeEEEEEEC---CCChhHhhhHHHHHHHHHhCCCcE--EEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE-EEEe
Q 026997 118 GDKLVVVDFFS---PGCGGCKALHPKICQLAEMNPDVQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC-IEEV 191 (229)
Q Consensus 118 ~~k~vlV~F~a---~WC~~Ck~~~p~l~~la~~~~~v~--f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~-~~~~ 191 (229)
.+...++.|++ +||++|+.+.|.+++++++|+++. ++.+|.+++++++++|+|.++||+++|++| +.. .+..
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g--~~~~~~~~ 95 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG--KDGGIRYT 95 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC--eeeEEEEe
Confidence 34455666888 999999999999999999998754 666666699999999999999999999885 344 4777
Q ss_pred cccCC
Q 026997 192 GLAEV 196 (229)
Q Consensus 192 G~~~~ 196 (229)
|....
T Consensus 96 G~~~~ 100 (215)
T TIGR02187 96 GIPAG 100 (215)
T ss_pred ecCCH
Confidence 76654
No 76
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.34 E-value=9.1e-12 Score=92.01 Aligned_cols=74 Identities=27% Similarity=0.467 Sum_probs=65.8
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhC--CCcEEEEEECcCc-----------------------HHHHHHCCCCc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEH-----------------------KSMCYSLNVHV 172 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~--~~v~f~~Vd~d~~-----------------------~~l~~~~~I~~ 172 (229)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+++.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999998 5699999999886 78899999999
Q ss_pred ccEEEEEECCCceEEEEEec
Q 026997 173 LPFFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 173 ~Pt~l~~~~g~g~~~~~~~G 192 (229)
+|+++++ |.+|+++....|
T Consensus 98 ~P~~~l~-d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLI-DRDGRIRARHVG 116 (116)
T ss_pred cceEEEE-CCCCcEEEEecC
Confidence 9999988 556888877655
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.34 E-value=3e-12 Score=96.39 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=59.9
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHH---HHhCC-CcEEEEEECcCc--------------------HHHHHHCCCCc
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQL---AEMNP-DVQFLQVNYEEH--------------------KSMCYSLNVHV 172 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~l---a~~~~-~v~f~~Vd~d~~--------------------~~l~~~~~I~~ 172 (229)
.+++++|++||++||++|+.+.+.+.+. ...+. ++.++.++++.. .+++++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4789999999999999999999999854 44443 488888888753 35899999999
Q ss_pred ccEEEEEECCCceEEEEEecccCC
Q 026997 173 LPFFRFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 173 ~Pt~l~~~~g~g~~~~~~~G~~~~ 196 (229)
+||++++ +++|+++....|+.+.
T Consensus 83 tPt~~~~-d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 83 TPTIVFL-DKDGKIVYRIPGYLSP 105 (112)
T ss_dssp SSEEEEC-TTTSCEEEEEESS--H
T ss_pred cCEEEEE-cCCCCEEEEecCCCCH
Confidence 9999998 5678999889998753
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.34 E-value=5.1e-12 Score=106.73 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=62.0
Q ss_pred HHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 111 ~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
.+.+....+..+++.||++||++|+.+.+.+++++.+++++.+..+|.+++++++++|+|.++||++++++|
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC
Confidence 444444344556666999999999999999999999988899999999999999999999999999998664
No 79
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.33 E-value=1.1e-11 Score=102.33 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=62.3
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH-----------------------HHHHHCCCCccc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------------------SMCYSLNVHVLP 174 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----------------------~l~~~~~I~~~P 174 (229)
.+++++|+||++||++|+.+.|.+.++.++ ++.++.|+.++.. .+++.|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999999764 6888888865432 245578999999
Q ss_pred EEEEEECCCceEEEEEecccCC
Q 026997 175 FFRFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 175 t~l~~~~g~g~~~~~~~G~~~~ 196 (229)
+.+++ |.+|++.....|..+.
T Consensus 145 ~t~vi-d~~G~i~~~~~G~~~~ 165 (185)
T PRK15412 145 ETFLI-DGNGIIRYRHAGDLNP 165 (185)
T ss_pred eEEEE-CCCceEEEEEecCCCH
Confidence 98888 5569999999886643
No 80
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.33 E-value=1.2e-11 Score=99.58 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc------------HHHH-HHC---CCCcccEEEEEEC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH------------KSMC-YSL---NVHVLPFFRFYRG 181 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~------------~~l~-~~~---~I~~~Pt~l~~~~ 181 (229)
.++..||+|||+||++|+.+.|.+++++++| ++.++.|++|+. .+.. ..| ++.++||+++++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 3566799999999999999999999999998 466767776642 2333 345 8899999999954
Q ss_pred CCce-EEEEEecccCC
Q 026997 182 AHGR-VCIEEVGLAEV 196 (229)
Q Consensus 182 g~g~-~~~~~~G~~~~ 196 (229)
+|+ +.....|..+.
T Consensus 128 -~G~~i~~~~~G~~s~ 142 (153)
T TIGR02738 128 -NTRKAYPVLQGAVDE 142 (153)
T ss_pred -CCCEEEEEeecccCH
Confidence 444 45566776543
No 81
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=116.26 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=66.9
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEE----------------------------CcCcHHHHH
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVN----------------------------YEEHKSMCY 166 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd----------------------------~d~~~~l~~ 166 (229)
+++++|||+|||+||++|+.+.|.+++++++++ ++.|+.|. +|.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 378999999999999999999999999999886 56665543 345677899
Q ss_pred HCCCCcccEEEEEECCCceEEEEEecccCCC
Q 026997 167 SLNVHVLPFFRFYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 167 ~~~I~~~Pt~l~~~~g~g~~~~~~~G~~~~~ 197 (229)
.|+|.++||++++ +.+|+++....|.....
T Consensus 134 ~fgV~giPTt~II-DkdGkIV~~~~G~~~~e 163 (521)
T PRK14018 134 SLNISVYPSWAII-GKDGDVQRIVKGSISEA 163 (521)
T ss_pred HcCCCCcCeEEEE-cCCCeEEEEEeCCCCHH
Confidence 9999999999888 44589999999977543
No 82
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.26 E-value=8.7e-12 Score=117.11 Aligned_cols=94 Identities=22% Similarity=0.330 Sum_probs=75.9
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHH---HHHHhCCCcEEEEEECcC----cHHHHHHCCCCccc
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLP 174 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~---~la~~~~~v~f~~Vd~d~----~~~l~~~~~I~~~P 174 (229)
+.+.+..++++.+.++++|||+|||||+||..||.+++..- +.+.+.+|++.+++|+++ +.++.++|++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 66777779999998878889999999999999999999875 566678899999999986 45678999999999
Q ss_pred EEEEEECCCceEEEEEecccCC
Q 026997 175 FFRFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 175 t~l~~~~g~g~~~~~~~G~~~~ 196 (229)
++++|. ++|......+|+.+.
T Consensus 537 ~~~ff~-~~g~e~~~l~gf~~a 557 (569)
T COG4232 537 TYLFFG-PQGSEPEILTGFLTA 557 (569)
T ss_pred EEEEEC-CCCCcCcCCcceecH
Confidence 999995 223333336665543
No 83
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.26 E-value=4.9e-11 Score=92.12 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=62.5
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECc---------------------------CcHHHHHHC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE---------------------------EHKSMCYSL 168 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d---------------------------~~~~l~~~~ 168 (229)
+++++||+||++||++|+...|.++++.++|++ +.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999874 777777531 223567789
Q ss_pred CCCcccEEEEEECCCceEEEEEecc
Q 026997 169 NVHVLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 169 ~I~~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
++.++|+++++ |.+|+++....|.
T Consensus 102 ~v~~~P~~~vi-d~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLI-DPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEE-CCCCcEEEEEecC
Confidence 99999999998 5569999888774
No 84
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.25 E-value=3.9e-11 Score=87.93 Aligned_cols=65 Identities=11% Similarity=0.242 Sum_probs=58.8
Q ss_pred HHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 114 l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
+..-.+..-+..|+++||++|....+.++++++.++++.+..+|.++.++++++|+|.++||+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE
Confidence 33335667888899999999999999999999999999999999999999999999999999964
No 85
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.24 E-value=4.7e-11 Score=97.48 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=60.4
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEEC-----------------------cCcHHHHHHCCCCccc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP 174 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~-----------------------d~~~~l~~~~~I~~~P 174 (229)
.+++++|+||++||++|+.+.|.++++.++ ++.++.|+. |.+..+++.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 578999999999999999999999999765 466666654 3344567889999999
Q ss_pred EEEEEECCCceEEEEEecccC
Q 026997 175 FFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 175 t~l~~~~g~g~~~~~~~G~~~ 195 (229)
+.+++ +.+|++.....|...
T Consensus 140 ~~~~i-d~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 140 ETFLV-DGNGVILYRHAGPLN 159 (173)
T ss_pred eEEEE-cCCceEEEEEeccCC
Confidence 88888 445899999888654
No 86
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.24 E-value=3.9e-11 Score=85.20 Aligned_cols=61 Identities=16% Similarity=0.325 Sum_probs=50.1
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEEEEec
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~~~G 192 (229)
.|+||++||++|+.+.|.+++++++++. +.|+.|| +.+.+.+|+|.++||+++ | |+.+ ..|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~--G~~~--~~G 63 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--D--GELV--IMG 63 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--C--CEEE--EEe
Confidence 3889999999999999999999999875 7887777 244478899999999998 5 4444 444
No 87
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.24 E-value=2.2e-11 Score=112.33 Aligned_cols=75 Identities=27% Similarity=0.463 Sum_probs=63.4
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC----cEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
.++|.+.+.. .+++++|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.+. +.. ++|.++||+++|++|
T Consensus 353 ~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 353 GKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred CcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCC
Confidence 4567666654 688999999999999999999999999998764 889999999764 444 999999999999876
Q ss_pred Cc
Q 026997 183 HG 184 (229)
Q Consensus 183 ~g 184 (229)
+.
T Consensus 430 ~~ 431 (462)
T TIGR01130 430 KK 431 (462)
T ss_pred CC
Confidence 43
No 88
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.20 E-value=1.1e-10 Score=95.84 Aligned_cols=106 Identities=25% Similarity=0.439 Sum_probs=97.1
Q ss_pred HhhcCCCCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCc
Q 026997 93 WEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172 (229)
Q Consensus 93 ~~~~~~~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~ 172 (229)
|.......+.+|.++.+|.+... ...-||++||-+--..|+.|...++.|++.|.+.+|++||++..|-++.+++|..
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 55667889999999999999884 4556999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEECCCceEEEEEecccCCCCCCCC
Q 026997 173 LPFFRFYRGAHGRVCIEEVGLAEVPPPHSI 202 (229)
Q Consensus 173 ~Pt~l~~~~g~g~~~~~~~G~~~~~~~~~l 202 (229)
+|++.+|++ |..+.+.+|+.+..+.+.+
T Consensus 138 LP~v~l~k~--g~~~D~iVGF~dLGnkDdF 165 (211)
T KOG1672|consen 138 LPTVALFKN--GKTVDYVVGFTDLGNKDDF 165 (211)
T ss_pred eeeEEEEEc--CEEEEEEeeHhhcCCCCcC
Confidence 999999999 7899999999987776655
No 89
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.20 E-value=1.2e-10 Score=87.79 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=49.5
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEE---CcCc-----------------HHHHHHCCCCcccEE
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVN---YEEH-----------------KSMCYSLNVHVLPFF 176 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd---~d~~-----------------~~l~~~~~I~~~Pt~ 176 (229)
.++++||+||++||++|+.+.|.++++.+++.+ +.++.+. .++. .++.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 378999999999999999999999999888754 6666552 1112 234556666677777
Q ss_pred EEEECCCceEEE
Q 026997 177 RFYRGAHGRVCI 188 (229)
Q Consensus 177 l~~~~g~g~~~~ 188 (229)
+++ |.+|++..
T Consensus 100 ~vi-d~~G~v~~ 110 (114)
T cd02967 100 VLL-DEAGVIAA 110 (114)
T ss_pred EEE-CCCCeEEe
Confidence 666 34455543
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.16 E-value=1.7e-10 Score=88.05 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=59.4
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEE---------------------CcCcHHHHHHCCCCcccEE
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------YEEHKSMCYSLNVHVLPFF 176 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd---------------------~d~~~~l~~~~~I~~~Pt~ 176 (229)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+.+++++|+|.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 46899999999999999999999999988743 2222222 1355679999999999999
Q ss_pred EEEECCCceEEEEEecccCC
Q 026997 177 RFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 177 l~~~~g~g~~~~~~~G~~~~ 196 (229)
++++++ | +.....|..+.
T Consensus 98 ~vid~~-g-i~~~~~g~~~~ 115 (123)
T cd03011 98 VIVDPG-G-IVFVTTGVTSE 115 (123)
T ss_pred EEEcCC-C-eEEEEeccCCH
Confidence 999664 5 88888887654
No 91
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.15 E-value=3.5e-10 Score=91.33 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=65.6
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcC----------------------cHHHHHHCCCCcc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL 173 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~----------------------~~~l~~~~~I~~~ 173 (229)
.+++++|+||++||++|+...+.+.++.+++++ +.++.|+++. +..+++.|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999998864 8888888753 4567899999999
Q ss_pred cEEEEEECCCceEEEEEecccC
Q 026997 174 PFFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 174 Pt~l~~~~g~g~~~~~~~G~~~ 195 (229)
|+++++ +.+|+++....|...
T Consensus 140 P~~~li-d~~g~i~~~~~g~~~ 160 (173)
T PRK03147 140 PTTFLI-DKDGKVVKVITGEMT 160 (173)
T ss_pred CeEEEE-CCCCcEEEEEeCCCC
Confidence 999988 445888888777654
No 92
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.8e-11 Score=107.26 Aligned_cols=66 Identities=30% Similarity=0.627 Sum_probs=62.7
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
..+++++|+||++||++|+.+.|.+.+++..+.+ +.+..||++++.++|++|+|.++||+.+|.+|
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC
Confidence 4678999999999999999999999999999887 89999999999999999999999999999886
No 93
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.15 E-value=9.6e-11 Score=102.13 Aligned_cols=73 Identities=19% Similarity=0.414 Sum_probs=63.5
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHH----hCCC--cEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAE----MNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 109 ~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~----~~~~--v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
++...+ ....+|+|.|||+||+..+.++|.+++.++ ++|+ +.+..|||+.+..|+.+|.|..+||+-+|++|
T Consensus 5 N~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 5 NIDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred cHHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence 344444 357899999999999999999999997766 4664 99999999999999999999999999999997
Q ss_pred C
Q 026997 183 H 183 (229)
Q Consensus 183 ~ 183 (229)
.
T Consensus 83 ~ 83 (375)
T KOG0912|consen 83 E 83 (375)
T ss_pred c
Confidence 4
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=2.2e-10 Score=116.44 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=63.7
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEEC---------------------------cCcHHHHHHC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNY---------------------------EEHKSMCYSL 168 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~---------------------------d~~~~l~~~~ 168 (229)
.+|++||+|||+||++|+.+.|.+++++++|++ +.++.|.. |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 689999999999999999999999999999975 67776631 2244677899
Q ss_pred CCCcccEEEEEECCCceEEEEEeccc
Q 026997 169 NVHVLPFFRFYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 169 ~I~~~Pt~l~~~~g~g~~~~~~~G~~ 194 (229)
+|.++|++++| +.+|+++.+..|..
T Consensus 499 ~V~~iPt~ili-d~~G~iv~~~~G~~ 523 (1057)
T PLN02919 499 GVSSWPTFAVV-SPNGKLIAQLSGEG 523 (1057)
T ss_pred CCCccceEEEE-CCCCeEEEEEeccc
Confidence 99999999999 44588988888854
No 95
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.11 E-value=5.4e-10 Score=87.96 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=65.7
Q ss_pred cCCCeEEEEEECC-CChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------cHHHHHHCCCC-
Q 026997 117 AGDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH- 171 (229)
Q Consensus 117 ~~~k~vlV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~~~l~~~~~I~- 171 (229)
..++++||+||++ ||++|+...|.+.++.+.|. ++.++.|..+. ...+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3789999999999 99999999999999988754 48887776543 34688899988
Q ss_pred --------cccEEEEEECCCceEEEEEecccC
Q 026997 172 --------VLPFFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 172 --------~~Pt~l~~~~g~g~~~~~~~G~~~ 195 (229)
++|+++++ +.+|+++....|...
T Consensus 106 ~~~~~~~~~~P~~~lI-d~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLI-DKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEE-ETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEE-ECCCEEEEEEeCCCC
Confidence 99999998 446999999999876
No 96
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.04 E-value=9.8e-10 Score=78.82 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=48.3
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHH---HHHHH-hCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEE
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l---~~la~-~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
+.+|+++|+|+++||+.|+.+...+ .++.+ ...++.++.||.++.....+. ...++|+++|+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 4689999999999999999999877 34444 235699999999875543322 227799999985
No 97
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.03 E-value=1.8e-09 Score=88.97 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=57.9
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc-------------HHHHHHCCC--CcccEEEEEECCCceEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------------KSMCYSLNV--HVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-------------~~l~~~~~I--~~~Pt~l~~~~g~g~~~ 187 (229)
||+||++||++|+.+.|.+.+++++| ++.++.|++|+. ..+.+.|++ .++|+.+++ |.+|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLI-d~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLV-NVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEE-eCCCcEE
Confidence 77799999999999999999999998 577777776632 236678985 699999999 5568875
Q ss_pred -EEEecccCCC
Q 026997 188 -IEEVGLAEVP 197 (229)
Q Consensus 188 -~~~~G~~~~~ 197 (229)
....|..+..
T Consensus 151 ~~~~~G~~~~~ 161 (181)
T PRK13728 151 LPLLQGATDAA 161 (181)
T ss_pred EEEEECCCCHH
Confidence 4678876543
No 98
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.02 E-value=1.8e-09 Score=94.07 Aligned_cols=98 Identities=20% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCCeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEE
Q 026997 98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (229)
Q Consensus 98 ~~~~~~i~s~e~~~~~l~~~-~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~ 176 (229)
...+.+|.+.++|.+.+... .+..|||+||-+.+..|..|...|..|+.+|+.++|++|..+..+ +..+|.+.++||+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence 34788899999999988642 356899999999999999999999999999999999999988765 7789999999999
Q ss_pred EEEECCCceEEEEEecccCCCC
Q 026997 177 RFYRGAHGRVCIEEVGLAEVPP 198 (229)
Q Consensus 177 l~~~~g~g~~~~~~~G~~~~~~ 198 (229)
++|++ |.++..++|+.+...
T Consensus 203 lvYk~--G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 203 LVYKN--GDLIGNFVGLTDLLG 222 (265)
T ss_dssp EEEET--TEEEEEECTGGGCT-
T ss_pred EEEEC--CEEEEeEEehHHhcC
Confidence 99998 789999999886544
No 99
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.01 E-value=1.3e-09 Score=85.24 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=53.8
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHH---HHHHhC-CCcEEEEEECcCc-HHHHHHCCCCcccEEEEEECCCceEEEEEe
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEEH-KSMCYSLNVHVLPFFRFYRGAHGRVCIEEV 191 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~---~la~~~-~~v~f~~Vd~d~~-~~l~~~~~I~~~Pt~l~~~~g~g~~~~~~~ 191 (229)
..+|+++|+|+++||++|+.|...+. ++.+.. .++..+.++.|.. .... ..+ .++||++|+ +.+|+++.+..
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFl-d~~g~vi~~i~ 97 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFV-DPSLTVRADIT 97 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEE-CCCCCCccccc
Confidence 47899999999999999999998653 333333 2455556665421 1111 233 689999999 55688888888
Q ss_pred cccCC
Q 026997 192 GLAEV 196 (229)
Q Consensus 192 G~~~~ 196 (229)
|..+.
T Consensus 98 Gy~~~ 102 (130)
T cd02960 98 GRYSN 102 (130)
T ss_pred ccccC
Confidence 87653
No 100
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.00 E-value=1.8e-09 Score=89.30 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=60.9
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEE------EEEECcC-----------------------------cH
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF------LQVNYEE-----------------------------HK 162 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f------~~Vd~d~-----------------------------~~ 162 (229)
.+|+.||+|||+||++|+..+|.++++.++ ++.+ +.||.|+ +.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 599999999999999999999999999764 2333 4455442 33
Q ss_pred HHHHHCCCCcccEEEEEECCCceEEEEEecccCC
Q 026997 163 SMCYSLNVHVLPFFRFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 163 ~l~~~~~I~~~Pt~l~~~~g~g~~~~~~~G~~~~ 196 (229)
.++..|++.++|+.+|+-|.+|+++....|..+.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 4677899999999855558899999999997543
No 101
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.97 E-value=6.1e-09 Score=79.16 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=63.4
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHH---HHHHHhCC-CcEEEEEECc--CcHHHHHHCCCCcccEEEEEECCCceEEEEE
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCIEE 190 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~f~~Vd~d--~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~~ 190 (229)
+++|+++|+|+++||.+|+.+...+ .++.+... +..++.+|.+ +..+++..|++.++|+++|+....|+++.+.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 4689999999999999999997643 23444333 4778888887 4667899999999999999965368999999
Q ss_pred ecccCC
Q 026997 191 VGLAEV 196 (229)
Q Consensus 191 ~G~~~~ 196 (229)
.|..+.
T Consensus 95 ~G~~~~ 100 (114)
T cd02958 95 SGNITP 100 (114)
T ss_pred cCCCCH
Confidence 888643
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.96 E-value=3.5e-09 Score=87.80 Aligned_cols=70 Identities=16% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc--------------------CcHHHHHHCCCCcccEEE
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------EHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d--------------------~~~~l~~~~~I~~~Pt~l 177 (229)
.+++++|+||++||++|+.+.|.+.++.+++ ++.++.|+.+ ...++++.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 6789999999999999999999999998765 3444444321 134678899999999998
Q ss_pred EEECCCceEEEE
Q 026997 178 FYRGAHGRVCIE 189 (229)
Q Consensus 178 ~~~~g~g~~~~~ 189 (229)
++ |.+|++...
T Consensus 152 lI-D~~G~I~~~ 162 (189)
T TIGR02661 152 LL-DQDGKIRAK 162 (189)
T ss_pred EE-CCCCeEEEc
Confidence 87 556877764
No 103
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.96 E-value=2.8e-09 Score=77.58 Aligned_cols=66 Identities=29% Similarity=0.547 Sum_probs=60.7
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECc-CcHHHHHHCC--CCcccEEEEEECCCc
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-EHKSMCYSLN--VHVLPFFRFYRGAHG 184 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d-~~~~l~~~~~--I~~~Pt~l~~~~g~g 184 (229)
+++++++||++||++|+.+.|.+.++++++.+ +.++.+|.. .++.+...|+ +..+|+++++.+++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 78999999999999999999999999999985 999999997 7899999999 999999998888643
No 104
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=5.2e-10 Score=104.57 Aligned_cols=76 Identities=21% Similarity=0.490 Sum_probs=64.5
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC----cEEEEEECc--CcHHHHHHCCCCcccEEEE
Q 026997 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYE--EHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 105 ~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~f~~Vd~d--~~~~l~~~~~I~~~Pt~l~ 178 (229)
.+.+.|...+.. +.+-.+|.||++|||+|+.+.|.+.+++++..+ +.++.|||- +|..+|++|+|.++|++.+
T Consensus 44 Ld~~tf~~~v~~-~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 44 LDVDTFNAAVFG-SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred eehhhhHHHhcc-cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 445667777765 346789999999999999999999999998654 788899985 5889999999999999999
Q ss_pred EEC
Q 026997 179 YRG 181 (229)
Q Consensus 179 ~~~ 181 (229)
|..
T Consensus 123 f~~ 125 (606)
T KOG1731|consen 123 FPP 125 (606)
T ss_pred cCC
Confidence 954
No 105
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.85 E-value=1.7e-08 Score=81.80 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=59.4
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC-----------------------------cHHHHH
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------------HKSMCY 166 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~-----------------------------~~~l~~ 166 (229)
.++++||+||++||+.|....+.+.++.++|+ ++.|+.|+.|. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67899999999999999999999999999987 58888887653 224677
Q ss_pred HCCCCcccEEEEEECCCceEEEE
Q 026997 167 SLNVHVLPFFRFYRGAHGRVCIE 189 (229)
Q Consensus 167 ~~~I~~~Pt~l~~~~g~g~~~~~ 189 (229)
.|+|..+|+++++ |++|+++..
T Consensus 104 ~~~v~~~P~~~li-d~~G~v~~~ 125 (171)
T cd02969 104 AYGAACTPDFFLF-DPDGKLVYR 125 (171)
T ss_pred HcCCCcCCcEEEE-CCCCeEEEe
Confidence 8999999999888 556887754
No 106
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=8.3e-09 Score=94.29 Aligned_cols=82 Identities=26% Similarity=0.487 Sum_probs=67.7
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC---CcEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
+.+++. .++..... ..+..++|.||+|||++|+.+.|.+.+++..+. .+.+..+|++.+..++.+++|.++||+.
T Consensus 146 v~~l~~-~~~~~~~~-~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 146 VFELTK-DNFDETVK-DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred eEEccc-cchhhhhh-ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 444444 33444333 467789999999999999999999999998764 4899999999999999999999999999
Q ss_pred EEECCCc
Q 026997 178 FYRGAHG 184 (229)
Q Consensus 178 ~~~~g~g 184 (229)
+|.+|..
T Consensus 224 ~f~~~~~ 230 (383)
T KOG0191|consen 224 LFPPGEE 230 (383)
T ss_pred EecCCCc
Confidence 9987654
No 107
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.84 E-value=1.6e-08 Score=84.66 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=38.0
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (229)
.++++||+|||+||++|+...|.++++.++|. ++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 57899999999999999999999999999986 4889999863
No 108
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.83 E-value=1.6e-08 Score=86.80 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (229)
.++++||+||++||++|+...|.++++.++|. ++.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 57999999999999999999999999999986 4889988864
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.82 E-value=2.5e-08 Score=64.73 Aligned_cols=60 Identities=28% Similarity=0.505 Sum_probs=52.1
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHH---HCCCCcccEEEEEECC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGA 182 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~---~~~I~~~Pt~l~~~~g 182 (229)
|+.||++||++|+.+.+.+.++.....++.+..+|++......+ .+++..+|+++++.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999995556679999999998776654 8999999999999765
No 110
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.79 E-value=2.9e-08 Score=79.16 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (229)
.+|++||+||++||+ |+...|.++++.++|. ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 579999999999999 9999999999999986 4888888753
No 111
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.77 E-value=5.5e-08 Score=76.20 Aligned_cols=85 Identities=18% Similarity=0.044 Sum_probs=66.9
Q ss_pred hHHHHHHHccCCCeEEEEEEC--CCChhHhhhHHHHHHHHHhCC-C-cEEEEEECcCcHHHHHHCCCCcccEEEEEECCC
Q 026997 108 QDLVESLWHAGDKLVVVDFFS--PGCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a--~WC~~Ck~~~p~l~~la~~~~-~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
.++.+.+. .....+|.|-. --++.+-...=.+.+++++|+ + +.|++||+|++++++.+|+|.++||++||+|
T Consensus 25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd-- 100 (132)
T PRK11509 25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG-- 100 (132)
T ss_pred ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC--
Confidence 44555553 33345554543 346777788889999999998 3 8999999999999999999999999999999
Q ss_pred ceEEEEEecccCC
Q 026997 184 GRVCIEEVGLAEV 196 (229)
Q Consensus 184 g~~~~~~~G~~~~ 196 (229)
|+.+....|..+-
T Consensus 101 Gk~v~~i~G~~~k 113 (132)
T PRK11509 101 GNYRGVLNGIHPW 113 (132)
T ss_pred CEEEEEEeCcCCH
Confidence 7888888887654
No 112
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.77 E-value=4.2e-08 Score=76.75 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=58.5
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHC---CCCcccEEEEEECCCc
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHG 184 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~---~I~~~Pt~l~~~~g~g 184 (229)
++..+.+.....+.-++-|..+|||.|...-|.+.++++..+++.+-.+..|+++++.++| +...+|+|+|+++. |
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~-~ 108 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD-G 108 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC-C
Confidence 4445566655677888899999999999999999999999999888888888888887654 67889999999654 7
Q ss_pred eEEEEEeccc
Q 026997 185 RVCIEEVGLA 194 (229)
Q Consensus 185 ~~~~~~~G~~ 194 (229)
+...+....+
T Consensus 109 ~~lg~wgerP 118 (129)
T PF14595_consen 109 KELGRWGERP 118 (129)
T ss_dssp -EEEEEESS-
T ss_pred CEeEEEcCCC
Confidence 7776665543
No 113
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.4e-08 Score=85.02 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=76.2
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcCcHHHHHHCCCC-----
Q 026997 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH----- 171 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~I~----- 171 (229)
+.+...++.+.+++.+..+..+.++|.|||.|.+.|....|.+.+++.+|.. +.|.+||+...++.+++|+|.
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence 3566777888888888888889999999999999999999999999999864 999999999999999999886
Q ss_pred -cccEEEEEECCC
Q 026997 172 -VLPFFRFYRGAH 183 (229)
Q Consensus 172 -~~Pt~l~~~~g~ 183 (229)
.+||+++|++|+
T Consensus 204 rQLPT~ilFq~gk 216 (265)
T KOG0914|consen 204 RQLPTYILFQKGK 216 (265)
T ss_pred ccCCeEEEEccch
Confidence 599999999864
No 114
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.77 E-value=8.7e-08 Score=75.15 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCCeEEEEEECCC-ChhHhhhHHHHHHHHHhCCCcEEEEEECcCc-----------------------HHHHHHCCCCc-
Q 026997 118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------------------KSMCYSLNVHV- 172 (229)
Q Consensus 118 ~~k~vlV~F~a~W-C~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-----------------------~~l~~~~~I~~- 172 (229)
.++++||+||++| |++|+...|.+.++.++++++.++.|+.|.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 5789999999999 6999999999999999998999999887521 34566777753
Q ss_pred -----ccEEEEEECCCceEEEEEecccCC
Q 026997 173 -----LPFFRFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 173 -----~Pt~l~~~~g~g~~~~~~~G~~~~ 196 (229)
.|+.+++ +.+|++.....|....
T Consensus 105 ~~~~~~~~~~ii-d~~G~I~~~~~~~~~~ 132 (143)
T cd03014 105 DLGLLARAVFVI-DENGKVIYVELVPEIT 132 (143)
T ss_pred cCCccceEEEEE-cCCCeEEEEEECCCcc
Confidence 5777777 6668888888876543
No 115
>smart00594 UAS UAS domain.
Probab=98.72 E-value=1.9e-07 Score=72.06 Aligned_cols=66 Identities=11% Similarity=0.219 Sum_probs=51.5
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHH---HHHHhCC-CcEEEEEECc--CcHHHHHHCCCCcccEEEEEECC
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~---~la~~~~-~v~f~~Vd~d--~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
..+|+++|+|+++||..|+.+...+- ++.+... ++.+..+|++ +..+++..|++.++|++.++...
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 46889999999999999999986542 3333332 4777778876 45678999999999999999543
No 116
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.71 E-value=8.3e-08 Score=72.90 Aligned_cols=70 Identities=20% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCeEEEEEECC-CChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------cHHHHHHCCCC--
Q 026997 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH-- 171 (229)
Q Consensus 118 ~~k~vlV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~~~l~~~~~I~-- 171 (229)
.++++||.||++ ||+.|+...+.+.++.++|+ ++.++.|+.|. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 99999999999999998876 68999988763 33578889998
Q ss_pred ----cccEEEEEECCCceEEE
Q 026997 172 ----VLPFFRFYRGAHGRVCI 188 (229)
Q Consensus 172 ----~~Pt~l~~~~g~g~~~~ 188 (229)
.+|+++++. .+|+++.
T Consensus 104 ~~~~~~p~~~lid-~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLID-PDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEE-TTSBEEE
T ss_pred cCCceEeEEEEEC-CCCEEEe
Confidence 899999984 4577654
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.71 E-value=6.1e-08 Score=75.39 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc---------------------CcHHHHHHCCCCcc
Q 026997 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHVL 173 (229)
Q Consensus 118 ~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d---------------------~~~~l~~~~~I~~~ 173 (229)
.++++||+|| +.||+.|....+.+.++.+++. ++.++.|..| ....+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 6899999999999999888764 4777777654 23457788999888
Q ss_pred ---------cEEEEEECCCceEEEEEecccCCCCCC
Q 026997 174 ---------PFFRFYRGAHGRVCIEEVGLAEVPPPH 200 (229)
Q Consensus 174 ---------Pt~l~~~~g~g~~~~~~~G~~~~~~~~ 200 (229)
|+++++ |.+|++.....|.......+
T Consensus 102 ~~~~~~~~~p~~~li-d~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 102 KKKKYMGIERSTFLI-DPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred cccccCCcceeEEEE-CCCCEEEEEEecCCccchHH
Confidence 888777 66699999999988665544
No 118
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.68 E-value=2.4e-07 Score=75.26 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=56.1
Q ss_pred CCCeEEEEEECCC-ChhHhhhHHHHHHHHHhCCCcEEEEEECcC-----------------------cHHHHHHCCCCcc
Q 026997 118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVL 173 (229)
Q Consensus 118 ~~k~vlV~F~a~W-C~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-----------------------~~~l~~~~~I~~~ 173 (229)
.++++||+||++| |++|....|.+.++.+++.++.++.|+.|. ...+++.|++...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 5789999999999 999999999999999998788888887663 1245666776665
Q ss_pred c---------EEEEEECCCceEEEEEec
Q 026997 174 P---------FFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 174 P---------t~l~~~~g~g~~~~~~~G 192 (229)
| +.+++ |.+|++.....+
T Consensus 123 ~~~~~g~~~r~tfvI-d~~G~I~~~~~~ 149 (167)
T PRK00522 123 EGPLKGLLARAVFVL-DENNKVVYSELV 149 (167)
T ss_pred ccccCCceeeEEEEE-CCCCeEEEEEEC
Confidence 5 55555 555676666654
No 119
>PLN02412 probable glutathione peroxidase
Probab=98.66 E-value=1.3e-07 Score=76.78 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=37.9
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (229)
.++++||+||++||++|+...|.+.++.++|.+ +.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 579999999999999999999999999999874 888888864
No 120
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.61 E-value=2.2e-07 Score=74.09 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEEC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNY 158 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~ 158 (229)
.+|++||.|||+||++|+...|.+.++.++|+ ++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 57899999999999999999999999999986 488998885
No 121
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.59 E-value=6.4e-07 Score=75.92 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=69.2
Q ss_pred HHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc-----------CcHHHHHHCCCCcccEEEEE
Q 026997 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------EHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 111 ~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d-----------~~~~l~~~~~I~~~Pt~l~~ 179 (229)
.+.|....++.-|++||.+.|+.|+.+.|.+..++++| ++.++.|++| .+..++++++|..+|+++++
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv 190 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLV 190 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEE
Confidence 33444446788999999999999999999999999999 7777777777 35789999999999999999
Q ss_pred ECCCceEEEEEecccCC
Q 026997 180 RGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 180 ~~g~g~~~~~~~G~~~~ 196 (229)
..+.++..--..|+.+.
T Consensus 191 ~~~~~~~~pv~~G~~s~ 207 (215)
T PF13728_consen 191 NPNTKKWYPVSQGFMSL 207 (215)
T ss_pred ECCCCeEEEEeeecCCH
Confidence 77666666666666543
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.55 E-value=2.2e-07 Score=64.73 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=42.0
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHH-----CCCCcccEEEEEECC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-----LNVHVLPFFRFYRGA 182 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~-----~~I~~~Pt~l~~~~g 182 (229)
++.||++||++|+.+++.+.++ ++.+-.+|++++....+. +++..+|++ ++.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC
Confidence 5679999999999999998766 345567888877666555 489999997 46554
No 123
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.53 E-value=6.7e-07 Score=69.94 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcCc
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEH 161 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~ 161 (229)
++.+|+.||++||++|+...|.+.++.+++. ++.++.|+.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3455555569999999999999999999874 588888887643
No 124
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.52 E-value=4.1e-07 Score=62.30 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=43.1
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHH----HHHHCCCCcccEEEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFY 179 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~----l~~~~~I~~~Pt~l~~ 179 (229)
+..|+++||++|+.+.+.+.+ .++.+..+|+++++. +.+.+++.++|++++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 567999999999999988865 368889999987654 4567999999999874
No 125
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.49 E-value=3e-07 Score=73.68 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC----CcEEEEEECcC-------------------------cHHHHHHC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEE-------------------------HKSMCYSL 168 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~-------------------------~~~l~~~~ 168 (229)
.+|.|.+||.|.||++||.+-|.+.++.++.. .+.++-|+-|. ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 57999999999999999999999887776533 34444454432 13578899
Q ss_pred CCCcccEEEEEECCCceEEE
Q 026997 169 NVHVLPFFRFYRGAHGRVCI 188 (229)
Q Consensus 169 ~I~~~Pt~l~~~~g~g~~~~ 188 (229)
.|.++|++.+.+. +|..+.
T Consensus 112 ~v~~iP~l~i~~~-dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKP-DGTVVT 130 (157)
T ss_pred ccCcCceeEEecC-CCCEeh
Confidence 9999999998843 354443
No 126
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.45 E-value=1.5e-06 Score=68.32 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=56.0
Q ss_pred CeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------c--HHHHHHCCCCc-
Q 026997 120 KLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------H--KSMCYSLNVHV- 172 (229)
Q Consensus 120 k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~--~~l~~~~~I~~- 172 (229)
++++|.|| ++||+.|....|.+.++.+++. ++.++.|+.+. . ..+++.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 9999999999999999988875 47787776542 2 45677778773
Q ss_pred ---cc--EEEEEECCCceEEEEEeccc
Q 026997 173 ---LP--FFRFYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 173 ---~P--t~l~~~~g~g~~~~~~~G~~ 194 (229)
+| +++++ +.+|++.....|..
T Consensus 109 ~~~~~~~~~~li-d~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVI-DRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEE-CCCCEEEEEEecCC
Confidence 33 66666 55688888877765
No 127
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.44 E-value=1.6e-06 Score=66.81 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCHhHHHHHHHc--cCCCeEEEEEECC-------CChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcH-------HHHH-
Q 026997 105 ASAQDLVESLWH--AGDKLVVVDFFSP-------GCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-------SMCY- 166 (229)
Q Consensus 105 ~s~e~~~~~l~~--~~~k~vlV~F~a~-------WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~-------~l~~- 166 (229)
...++|.+.+.. ..+++++|.|+++ ||+.|....|.+.+.-...+ +..|+.|.+...+ ..-+
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 455777777764 5678999999854 99999999999998777665 5888888774321 2333
Q ss_pred -HCCCCcccEEEEEECCCceEE
Q 026997 167 -SLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 167 -~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+++++++||++-|.++ +|+.
T Consensus 83 p~~~l~~IPTLi~~~~~-~rL~ 103 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG-ERLV 103 (119)
T ss_dssp -CC---SSSEEEECTSS--EEE
T ss_pred ceeeeeecceEEEECCC-Cccc
Confidence 5999999999999654 4433
No 128
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=2.1e-06 Score=66.06 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=79.6
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccEEEEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
..+++..+.++.+....++++|+-|.-+|-+.|..|...+.++++...+ ..++-+|+++.+++.+-|++...||++||-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 3467888899999988999999999999999999999999999999888 788899999999999999999999999887
Q ss_pred CCCceEEEEEec
Q 026997 181 GAHGRVCIEEVG 192 (229)
Q Consensus 181 ~g~g~~~~~~~G 192 (229)
+++-.-++.-+|
T Consensus 86 n~kHmkiD~gtg 97 (142)
T KOG3414|consen 86 NNKHMKIDLGTG 97 (142)
T ss_pred cCceEEEeeCCC
Confidence 876544444333
No 129
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.41 E-value=2.7e-06 Score=65.97 Aligned_cols=77 Identities=18% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCCeEEEEEE-CCCChhHhhhHHHHHHHHHhC--CCcEEEEEECcC----------------------cHHHHHHCCCCc
Q 026997 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------HKSMCYSLNVHV 172 (229)
Q Consensus 118 ~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~--~~v~f~~Vd~d~----------------------~~~l~~~~~I~~ 172 (229)
.+++++|+|| +.||+.|....|.+.++.+++ +++.|+.|..+. ...+++.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5789999999 789999999999999998876 357888777642 234667777776
Q ss_pred cc---------EEEEEECCCceEEEEEecccC
Q 026997 173 LP---------FFRFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 173 ~P---------t~l~~~~g~g~~~~~~~G~~~ 195 (229)
.| +++++ |.+|+++....|...
T Consensus 101 ~~~~~~~~~~p~~~li-d~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFII-DPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEE-CCCCcEEEEEecCCC
Confidence 65 55555 556888888877665
No 130
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.39 E-value=1.5e-06 Score=67.61 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCCeEEEEEECCCChh-HhhhHHHHHHHHHhCCC-----cEEEEEECc
Q 026997 118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNPD-----VQFLQVNYE 159 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~-Ck~~~p~l~~la~~~~~-----v~f~~Vd~d 159 (229)
.++++||.||++||++ |....+.+.++.+++.+ +.++.|+.|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999997 99999999999887753 888888765
No 131
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.38 E-value=9.7e-07 Score=70.16 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCCeEEEEEECC-CChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------cHHHHHHCCCCcc
Q 026997 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL 173 (229)
Q Consensus 118 ~~k~vlV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~~~l~~~~~I~~~ 173 (229)
.++++||+||+. ||+.|....+.+.++.+++. ++.++.|+.|. ...+++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999986 68889999999998888764 48888887653 2346677777654
Q ss_pred ------------cEEEEEECCCceEEEEEecccCC
Q 026997 174 ------------PFFRFYRGAHGRVCIEEVGLAEV 196 (229)
Q Consensus 174 ------------Pt~l~~~~g~g~~~~~~~G~~~~ 196 (229)
|+.+++ |.+|+++....|+...
T Consensus 109 ~~~~~~~~~~~~~~~~li-d~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLI-DADGKIEHVFDKFKTS 142 (154)
T ss_pred cccccccccCcceEEEEE-CCCCEEEEEEcCCCcc
Confidence 454444 6668888888776543
No 132
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.38 E-value=1.5e-06 Score=71.63 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCCeE-EEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc
Q 026997 118 GDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (229)
Q Consensus 118 ~~k~v-lV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (229)
.++++ |+.+||+||++|+...|.++++.++|. ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 56654 456699999999999999999999886 4888888753
No 133
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.38 E-value=2.2e-06 Score=70.83 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=57.5
Q ss_pred CCCeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC-------------------------cHHHHHHCC
Q 026997 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 169 (229)
Q Consensus 118 ~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~-------------------------~~~l~~~~~ 169 (229)
.++++||+|| ++||++|....+.+.++.+++. ++.++.|..|. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999998888764 57777766552 235677888
Q ss_pred CC------cccEEEEEECCCceEEEEEec
Q 026997 170 VH------VLPFFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 170 I~------~~Pt~l~~~~g~g~~~~~~~G 192 (229)
+. ..|+.+++ |.+|++.....+
T Consensus 110 v~~~~~g~~~p~tfiI-D~~G~I~~~~~~ 137 (187)
T TIGR03137 110 VLIEEAGLADRGTFVI-DPEGVIQAVEIT 137 (187)
T ss_pred CcccCCCceeeEEEEE-CCCCEEEEEEEe
Confidence 86 45888777 556888877654
No 134
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.37 E-value=2.2e-06 Score=69.69 Aligned_cols=75 Identities=17% Similarity=0.059 Sum_probs=57.8
Q ss_pred CCCeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC----------------------------cHHHHH
Q 026997 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (229)
Q Consensus 118 ~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~----------------------------~~~l~~ 166 (229)
.++++||+|| ++||++|....+.+.++++++. ++.++.|.+|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 8999999999999999988874 47777776543 224566
Q ss_pred HCCCC------cccEEEEEECCCceEEEEEecc
Q 026997 167 SLNVH------VLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 167 ~~~I~------~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
.|++. .+|+.+++ |.+|++.....+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lI-D~~G~I~~~~~~~ 139 (173)
T cd03015 108 DYGVLDEEEGVALRGTFII-DPEGIIRHITVND 139 (173)
T ss_pred HhCCccccCCceeeEEEEE-CCCCeEEEEEecC
Confidence 77876 56788777 5568888887654
No 135
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.9e-07 Score=77.41 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=75.4
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
+..|...++| +.. .++.++++||++||.+|+.+...++.+++..+++.|++++.++.++++..+.+...|++.++.
T Consensus 3 v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 3 VQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred ceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 4567777888 333 789999999999999999999999999999889999999999999999999999999999997
Q ss_pred CCCceEEEEEecccC
Q 026997 181 GAHGRVCIEEVGLAE 195 (229)
Q Consensus 181 ~g~g~~~~~~~G~~~ 195 (229)
.| ..+.+..|...
T Consensus 79 ~~--~~v~~l~~~~~ 91 (227)
T KOG0911|consen 79 LG--EKVDRLSGADP 91 (227)
T ss_pred cc--hhhhhhhccCc
Confidence 74 44444444443
No 136
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.32 E-value=1.6e-06 Score=61.47 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=42.3
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH-----HHHHHCCCCcccEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFR 177 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----~l~~~~~I~~~Pt~l 177 (229)
|+.|+++||++|+.+.+.+.++.-. +.+.++.||.+++. .+.+.+++..+|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 4679999999999999999988621 23788888876543 266778999999983
No 137
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.32 E-value=4.4e-06 Score=67.73 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=50.2
Q ss_pred cCCCeEEEEEECCCChhHhhhHHH-HH--HHHHhCC-CcEEEEEECcCcHHHHHHC--------CCCcccEEEEEECCCc
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMNP-DVQFLQVNYEEHKSMCYSL--------NVHVLPFFRFYRGAHG 184 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~-l~--~la~~~~-~v~f~~Vd~d~~~~l~~~~--------~I~~~Pt~l~~~~g~g 184 (229)
+.+|+++|+++.+||.-|+.|... +. ++++.+. +..-++||.++.+++...| +..|+|+.+|. ..+|
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfl-tPdg 113 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFL-TPDG 113 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE--TTS
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEE-CCCC
Confidence 468999999999999999999853 22 3444332 4777889999999998887 78999999988 5578
Q ss_pred eEEEEEecccC
Q 026997 185 RVCIEEVGLAE 195 (229)
Q Consensus 185 ~~~~~~~G~~~ 195 (229)
++....+.+..
T Consensus 114 ~p~~~~tY~P~ 124 (163)
T PF03190_consen 114 KPFFGGTYFPP 124 (163)
T ss_dssp -EEEEESS--S
T ss_pred CeeeeeeecCC
Confidence 88877655543
No 138
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.21 E-value=1.5e-05 Score=69.20 Aligned_cols=84 Identities=10% Similarity=0.151 Sum_probs=65.9
Q ss_pred HHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc-----------HHHHHHCCCCcccEEEEE
Q 026997 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 111 ~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-----------~~l~~~~~I~~~Pt~l~~ 179 (229)
.+.|....++.-|++||.+-|+.|+.+.|.+..++++|+ +.++.|++|.. ..++++++|..+|++++.
T Consensus 142 ~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv 220 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLV 220 (256)
T ss_pred HHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence 344444456789999999999999999999999999984 66767776643 558999999999999999
Q ss_pred ECCCceEEEEEecccC
Q 026997 180 RGAHGRVCIEEVGLAE 195 (229)
Q Consensus 180 ~~g~g~~~~~~~G~~~ 195 (229)
....++..---.|+.+
T Consensus 221 ~~~t~~~~pv~~G~iS 236 (256)
T TIGR02739 221 NPKSQKMSPLAYGFIS 236 (256)
T ss_pred ECCCCcEEEEeeccCC
Confidence 7765666555556554
No 139
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.16 E-value=1.9e-05 Score=65.55 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=57.9
Q ss_pred CCCeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC-------------------------cHHHHHHCC
Q 026997 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 169 (229)
Q Consensus 118 ~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~-------------------------~~~l~~~~~ 169 (229)
.++++||+|| ++||+.|....+.+.++.+++. ++.++.|+.|. +.++++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5679999999 9999999999999999988874 46677666542 346788899
Q ss_pred C----Ccc--cEEEEEECCCceEEEEEec
Q 026997 170 V----HVL--PFFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 170 I----~~~--Pt~l~~~~g~g~~~~~~~G 192 (229)
+ .++ |+.+++ |.+|++......
T Consensus 110 v~~~~~g~~~r~tfII-D~~G~I~~~~~~ 137 (187)
T PRK10382 110 NMREDEGLADRATFVV-DPQGIIQAIEVT 137 (187)
T ss_pred CCcccCCceeeEEEEE-CCCCEEEEEEEe
Confidence 8 356 888888 666888777654
No 140
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.16 E-value=3.9e-05 Score=57.80 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=64.6
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHH----HHHHCCCCc-ccE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKS----MCYSLNVHV-LPF 175 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~----l~~~~~I~~-~Pt 175 (229)
..|++.+++++.+..+.+++++|+=.++.|+........+++.....++ +.++.+|+-+++. ++++|||.. -|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 5789999999999888899999999999999999999999999998877 9999999988665 688999875 799
Q ss_pred EEEEECCCceEEEEEe
Q 026997 176 FRFYRGAHGRVCIEEV 191 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~ 191 (229)
++++++ |+.+....
T Consensus 82 ~ili~~--g~~v~~aS 95 (105)
T PF11009_consen 82 VILIKN--GKVVWHAS 95 (105)
T ss_dssp EEEEET--TEEEEEEE
T ss_pred EEEEEC--CEEEEECc
Confidence 999999 55555443
No 141
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.13 E-value=1.1e-05 Score=67.52 Aligned_cols=83 Identities=22% Similarity=0.471 Sum_probs=74.3
Q ss_pred CeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 100 NMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~-~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
.+.++++.++|.+.+... ..-.++|++|-+.-..|..+...+.-|+.+||-++|++|- ..+.....+|...++||++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckik-ss~~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIK-SSNTGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEee-eccccchhhhcccCCceEEE
Confidence 678899999999999754 5667899999999999999999999999999999999998 44566789999999999999
Q ss_pred EECCC
Q 026997 179 YRGAH 183 (229)
Q Consensus 179 ~~~g~ 183 (229)
|++|+
T Consensus 218 YkgGe 222 (273)
T KOG3171|consen 218 YKGGE 222 (273)
T ss_pred eeCCc
Confidence 99964
No 142
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.12 E-value=1.1e-05 Score=58.07 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=47.4
Q ss_pred EEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH----HHHHHCC--CCcccEEEEEECC
Q 026997 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGA 182 (229)
Q Consensus 122 vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~----~l~~~~~--I~~~Pt~l~~~~g 182 (229)
-|+.|+.+||+.|+.....++++..++.++.+..+|+++++ ++.+..+ +..+|+++ .+|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g 66 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQ 66 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECC
Confidence 36779999999999999999999988888999999988643 4555444 57899975 364
No 143
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.6e-05 Score=63.62 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=62.0
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHH---HHHHhCC-CcEEEEEECcC----------------cHHHHHHCCCCcccEE
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEE----------------HKSMCYSLNVHVLPFF 176 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~---~la~~~~-~v~f~~Vd~d~----------------~~~l~~~~~I~~~Pt~ 176 (229)
..++..++.|-.+.|..|..++..+. ++.+-.. ++.++.+|++. ..+|++.|+|+++|||
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 46899999999999999999998775 4454443 36777777541 3589999999999999
Q ss_pred EEEECCCceEEEEEecccC
Q 026997 177 RFYRGAHGRVCIEEVGLAE 195 (229)
Q Consensus 177 l~~~~g~g~~~~~~~G~~~ 195 (229)
+|| |++|+...+.-|+..
T Consensus 120 vFf-dk~Gk~Il~lPGY~p 137 (182)
T COG2143 120 VFF-DKTGKTILELPGYMP 137 (182)
T ss_pred EEE-cCCCCEEEecCCCCC
Confidence 999 667888888877764
No 144
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.06 E-value=6.7e-05 Score=57.57 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=61.3
Q ss_pred cCCCeEEEEEECC----CChhHhhhH--HHHHHHHHhCCCcEEEEEECcC--cHHHHHHCCCCcccEEEEEE--CCCceE
Q 026997 117 AGDKLVVVDFFSP----GCGGCKALH--PKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR--GAHGRV 186 (229)
Q Consensus 117 ~~~k~vlV~F~a~----WC~~Ck~~~--p~l~~la~~~~~v~f~~Vd~d~--~~~l~~~~~I~~~Pt~l~~~--~g~g~~ 186 (229)
...|+++|+||++ ||..|+... |.+.++..+ ++.+...|++. ..+++..+++.++|++.++. +++..+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 4789999999999 999998774 556565543 57777888874 56789999999999999883 555677
Q ss_pred EEEEecccCC
Q 026997 187 CIEEVGLAEV 196 (229)
Q Consensus 187 ~~~~~G~~~~ 196 (229)
+.+..|..+.
T Consensus 93 v~~i~G~~~~ 102 (116)
T cd02991 93 VGRLEGLIQP 102 (116)
T ss_pred EEEEeCCCCH
Confidence 8888887653
No 145
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.05 E-value=4.6e-05 Score=59.28 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=67.8
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccE-EEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF-FRFY 179 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt-~l~~ 179 (229)
..+++.-+.++.+....++++++-|.-+|-+.|..+...+.+++++.++ ..++.+|+++-+++.+.|.+. .|. ++||
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4677888999999988999999999999999999999999999999888 789999999999999999999 665 5555
Q ss_pred ECCC
Q 026997 180 RGAH 183 (229)
Q Consensus 180 ~~g~ 183 (229)
-+++
T Consensus 82 ~rnk 85 (133)
T PF02966_consen 82 FRNK 85 (133)
T ss_dssp ETTE
T ss_pred ecCe
Confidence 4654
No 146
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.02 E-value=5.7e-05 Score=65.31 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=62.6
Q ss_pred HHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC-----------cHHHHHHCCCCcccEEEEEECC
Q 026997 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 114 l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-----------~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
|..-.++.-|++||.+-|+.|+.+.|.+..++++| ++.++-|++|- +...+++++|..+|++++....
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 43334668899999999999999999999999998 45555555542 3346789999999999999776
Q ss_pred CceEEEEEecccCC
Q 026997 183 HGRVCIEEVGLAEV 196 (229)
Q Consensus 183 ~g~~~~~~~G~~~~ 196 (229)
.++..---.|..+.
T Consensus 217 t~~~~pv~~G~iS~ 230 (248)
T PRK13703 217 SGSVRPLSYGFITQ 230 (248)
T ss_pred CCcEEEEeeccCCH
Confidence 66666656665543
No 147
>PRK15000 peroxidase; Provisional
Probab=98.02 E-value=3.8e-05 Score=64.30 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=58.8
Q ss_pred CCCeEEEEEEC-CCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC----------------------------cHHHHH
Q 026997 118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (229)
Q Consensus 118 ~~k~vlV~F~a-~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~----------------------------~~~l~~ 166 (229)
+++++||+||+ +||+.|....+.+.++.+++. ++.++.|.+|. ..++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 599999999999999988875 47777776652 224667
Q ss_pred HCCCC------cccEEEEEECCCceEEEEEecc
Q 026997 167 SLNVH------VLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 167 ~~~I~------~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
.|++. .+|+.+++ |.+|++.....+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiI-D~~G~I~~~~~~~ 144 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLI-DANGIVRHQVVND 144 (200)
T ss_pred HcCCccCCCCcEEeEEEEE-CCCCEEEEEEecC
Confidence 78887 68888888 5568888877663
No 148
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=3.7e-05 Score=58.79 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=59.7
Q ss_pred CCHhHHHHHHHcc-CCCeEEEEEEC--------CCChhHhhhHHHHHHHHHhCC-CcEEEEEECcC-------cHHHHHH
Q 026997 105 ASAQDLVESLWHA-GDKLVVVDFFS--------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS 167 (229)
Q Consensus 105 ~s~e~~~~~l~~~-~~k~vlV~F~a--------~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~-------~~~l~~~ 167 (229)
.-.++|.+.+.+. +++.++|+|++ +||+.|....|.+.+.-+..+ ++.|+.|++-+ +...-..
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 3345666666532 45559999985 699999999999998888665 59999999754 3334556
Q ss_pred CCC-CcccEEEEEECCCceE
Q 026997 168 LNV-HVLPFFRFYRGAHGRV 186 (229)
Q Consensus 168 ~~I-~~~Pt~l~~~~g~g~~ 186 (229)
.++ .++||++=|+++.++.
T Consensus 90 ~~~lt~vPTLlrw~~~~~rL 109 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKRQPQRL 109 (128)
T ss_pred CCceeecceeeEEcCccccc
Confidence 666 9999999997543433
No 149
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.97 E-value=4.2e-05 Score=53.99 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=45.1
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
|.+++++|+.|..+...++++...++ +.+-.+|.++.+++ .+|+|.++|+++ + ||
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalv-I-ng 57 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALV-I-NG 57 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEE-E-TT
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEE-E-CC
Confidence 34478889999999999999999984 77777888777777 999999999994 3 64
No 150
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.96 E-value=3.4e-05 Score=52.50 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=39.5
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHC----CCCcccEEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL----NVHVLPFFRF 178 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~----~I~~~Pt~l~ 178 (229)
++.|+++||++|+.+...+.+ .++.+..+|++.+....+.+ ++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 577999999999999888865 35677788888766554443 6889999975
No 151
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.90 E-value=7.5e-05 Score=62.55 Aligned_cols=72 Identities=11% Similarity=0.005 Sum_probs=52.9
Q ss_pred CCCeEEE-EEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc---------------------------CcHHHHHH
Q 026997 118 GDKLVVV-DFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------------EHKSMCYS 167 (229)
Q Consensus 118 ~~k~vlV-~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d---------------------------~~~~l~~~ 167 (229)
.++.+|| .||++||+.|....+.+.++.+++. ++.++.|++| .+.++++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4565555 6899999999999999998887764 4666666554 23467788
Q ss_pred CCCC------cccEEEEEECCCceEEEEE
Q 026997 168 LNVH------VLPFFRFYRGAHGRVCIEE 190 (229)
Q Consensus 168 ~~I~------~~Pt~l~~~~g~g~~~~~~ 190 (229)
|++. .+|+.+++ |.+|++....
T Consensus 106 ygv~~~~~g~~~p~~fiI-d~~G~I~~~~ 133 (202)
T PRK13190 106 YNLIDENSGATVRGVFII-DPNQIVRWMI 133 (202)
T ss_pred cCCccccCCcEEeEEEEE-CCCCEEEEEE
Confidence 8884 58999888 5567777655
No 152
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.82 E-value=2.8e-06 Score=71.95 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=62.6
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcCcHHHHHHCCCCcccEEEEEECCC
Q 026997 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 106 s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
+.+.+...+. .-.++.|+|+||+.|+...|.+++++.--.| +.+..||++.++.|.-+|-|..+|||.=.++|.
T Consensus 30 ~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 30 DEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE 105 (248)
T ss_pred cccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc
Confidence 3355666552 2389999999999999999999999875444 899999999999999999999999999888873
No 153
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.81 E-value=9.4e-05 Score=61.93 Aligned_cols=72 Identities=7% Similarity=-0.007 Sum_probs=53.7
Q ss_pred eEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------------cHHHHHHCCCC
Q 026997 121 LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYSLNVH 171 (229)
Q Consensus 121 ~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------------~~~l~~~~~I~ 171 (229)
.+|+.||++||+.|....+.+.++.+++. ++.++.|++|. +..+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999988875 47888777663 23567888876
Q ss_pred ----cc----cEEEEEECCCceEEEEEecc
Q 026997 172 ----VL----PFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 172 ----~~----Pt~l~~~~g~g~~~~~~~G~ 193 (229)
+. |+.+++ |.+|++.....+.
T Consensus 108 ~~~~~~~~~~r~~fiI-D~~G~I~~~~~~~ 136 (203)
T cd03016 108 DPDAGSTLTVRAVFII-DPDKKIRLILYYP 136 (203)
T ss_pred cccCCCCceeeEEEEE-CCCCeEEEEEecC
Confidence 23 345556 6678888776653
No 154
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.81 E-value=4.2e-05 Score=63.31 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (229)
.+|++||.|||+||+.|+. .|.++++.++|. ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 6799999999999999974 889999999986 4889998874
No 155
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.81 E-value=9.5e-05 Score=62.64 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=55.1
Q ss_pred CCCe-EEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------------cHHHHHH
Q 026997 118 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 167 (229)
Q Consensus 118 ~~k~-vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------------~~~l~~~ 167 (229)
.++. ||+.||++||+.|....+.+.++.+++. ++.++.|++|. +.++++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4555 5789999999999999999999998874 57777777663 2346777
Q ss_pred CCCC-------cccEEEEEECCCceEEEEEe
Q 026997 168 LNVH-------VLPFFRFYRGAHGRVCIEEV 191 (229)
Q Consensus 168 ~~I~-------~~Pt~l~~~~g~g~~~~~~~ 191 (229)
|++. .+|+.+++ |.+|++.....
T Consensus 107 yg~~~~~~~~~~~R~tfII-D~dG~Ir~~~~ 136 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIV-DDKGTIRLIMY 136 (215)
T ss_pred cCCCccCCCCceeeEEEEE-CCCCEEEEEEE
Confidence 8873 57888888 55677776653
No 156
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.80 E-value=9.2e-05 Score=70.95 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=58.4
Q ss_pred hHHHHHHHccCCCeE-EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 108 QDLVESLWHAGDKLV-VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 108 e~~~~~l~~~~~k~v-lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
++..+.|.. -++++ +--|.+++|+.|......+++++.+++++..-.||.++.++++++|+|.++|++++
T Consensus 465 ~~~~~~i~~-~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 465 EELLEKIKK-ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred HHHHHHHHh-cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE
Confidence 334445543 24555 44557999999999999999999999999999999999999999999999999974
No 157
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.79 E-value=0.00014 Score=63.41 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=54.7
Q ss_pred CCCeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC----------------------------cHHHHH
Q 026997 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (229)
Q Consensus 118 ~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~----------------------------~~~l~~ 166 (229)
.++++|+.|| ++||+.|....+.+.++.+++. ++.++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667888887 8999999999999998888774 46666666553 245778
Q ss_pred HCCCC-----cccEEEEEECCCceEEEEE
Q 026997 167 SLNVH-----VLPFFRFYRGAHGRVCIEE 190 (229)
Q Consensus 167 ~~~I~-----~~Pt~l~~~~g~g~~~~~~ 190 (229)
.|++. ..|+.+++ |.+|++....
T Consensus 177 ayGv~~~~g~a~R~tFII-D~dG~I~~~~ 204 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLV-DKAGVVKHVA 204 (261)
T ss_pred HcCCCCcCCceecEEEEE-CCCCEEEEEE
Confidence 88885 47888888 5557877765
No 158
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.79 E-value=7.9e-05 Score=53.87 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=44.4
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc----HHHHHHCCC--CcccEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV--HVLPFFR 177 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~----~~l~~~~~I--~~~Pt~l 177 (229)
++.|..+||++|+..+..++++..+++++.+..+|++.. .++.+.++- ..+|+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if 62 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF 62 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE
Confidence 567899999999999999999988777888888888753 246666664 7899984
No 159
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.75 E-value=0.00013 Score=69.34 Aligned_cols=71 Identities=14% Similarity=0.294 Sum_probs=61.0
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
++..+.+..-.++.-+.-|+++.|++|......+++++..+++|.+-.||..++++++++|+|.++|++++
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence 44455555434455588899999999999999999999999999999999999999999999999999964
No 160
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.73 E-value=0.00024 Score=59.18 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=57.3
Q ss_pred CCCeEEEEEEC-CCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC----------------------------cHHHHH
Q 026997 118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (229)
Q Consensus 118 ~~k~vlV~F~a-~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~----------------------------~~~l~~ 166 (229)
.++++||+||+ +||+.|....+.+.++.+++. ++.++.|++|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999994 889999999999999988876 57788777662 234677
Q ss_pred HCCCC------cccEEEEEECCCceEEEEEecc
Q 026997 167 SLNVH------VLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 167 ~~~I~------~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
.|++. .+|+.+++ |.+|++.....+.
T Consensus 115 ~ygv~~~~~g~~~r~~fiI-D~~G~i~~~~~~~ 146 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFII-DPKGMLRQITVND 146 (199)
T ss_pred HcCCcccCCCceEEEEEEE-CCCCEEEEEEecC
Confidence 88885 35787777 6568888776653
No 161
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.72 E-value=0.00011 Score=51.70 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=41.9
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc-H----HHHHHCCCCcccEEEEEECC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-K----SMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-~----~l~~~~~I~~~Pt~l~~~~g 182 (229)
|+.|+++||+.|+.+...+.++.. ++.++.+|.+++ . .+.+..++..+|++ |.+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECC
Confidence 467899999999999999998765 457777777654 2 34566788999996 3454
No 162
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.69 E-value=0.00026 Score=59.98 Aligned_cols=75 Identities=8% Similarity=0.006 Sum_probs=54.7
Q ss_pred CCCeEE-EEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------------cHHHHHH
Q 026997 118 GDKLVV-VDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 167 (229)
Q Consensus 118 ~~k~vl-V~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------------~~~l~~~ 167 (229)
.++++| +.||++||+.|....+.+.++++++. ++.++.|++|. +.++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 455555 58899999999999999999988874 57777777663 2356677
Q ss_pred CCCC-------cccEEEEEECCCceEEEEEecc
Q 026997 168 LNVH-------VLPFFRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 168 ~~I~-------~~Pt~l~~~~g~g~~~~~~~G~ 193 (229)
|++. .+|+.+++ |.+|++.....+.
T Consensus 112 ygv~~~~~~~~~~r~tfII-D~~G~Ir~~~~~~ 143 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIV-DDKGTVRLILYYP 143 (215)
T ss_pred cCCcccccCCceeEEEEEE-CCCCEEEEEEecC
Confidence 7863 36777777 6668888865443
No 163
>PRK13189 peroxiredoxin; Provisional
Probab=97.63 E-value=0.00032 Score=59.70 Aligned_cols=74 Identities=7% Similarity=0.023 Sum_probs=53.4
Q ss_pred CCC-eEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC---------------------------cHHHHHH
Q 026997 118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 167 (229)
Q Consensus 118 ~~k-~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------------~~~l~~~ 167 (229)
.++ .+|+.||++||+.|....+.+.++++++. ++.++.|.+|. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 55567889999999999999999888774 47777776552 2346777
Q ss_pred CCCC-------cccEEEEEECCCceEEEEEec
Q 026997 168 LNVH-------VLPFFRFYRGAHGRVCIEEVG 192 (229)
Q Consensus 168 ~~I~-------~~Pt~l~~~~g~g~~~~~~~G 192 (229)
|++. .+|+.+++ |.+|++.....+
T Consensus 114 ygv~~~~~~~~~~r~tfII-D~~G~Ir~~~~~ 144 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFII-DPKGIIRAILYY 144 (222)
T ss_pred hCCCccccCCCceeEEEEE-CCCCeEEEEEec
Confidence 8875 45777777 556887766543
No 164
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.57 E-value=0.00031 Score=46.88 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=39.8
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHH----HHCCCCcccEEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRF 178 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~I~~~Pt~l~ 178 (229)
++.|..+||+.|+..+..|++. ++.+-.+|++++++.. +..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5679999999999999998433 5778888888765443 3349999999874
No 165
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.55 E-value=0.0021 Score=51.76 Aligned_cols=99 Identities=13% Similarity=0.269 Sum_probs=80.1
Q ss_pred cccchhhHhHhhcCCCCeEEeCCHhHHHHHHHccCCCe-EEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcCc
Q 026997 84 LRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKL-VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH 161 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~s~e~~~~~l~~~~~k~-vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~ 161 (229)
........|......|.+.+++.. .+.... ..+++ +++.|...-......+...+..+++++.+ +.|+.+|++..
T Consensus 62 ~~~~~l~~fI~~~~~P~v~~~t~~-n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~ 138 (184)
T PF13848_consen 62 FTPEELKKFIKKNSFPLVPELTPE-NFEKLF--SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF 138 (184)
T ss_dssp TSHHHHHHHHHHHSSTSCEEESTT-HHHHHH--STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT
T ss_pred CCHHHHHHHHHHhccccccccchh-hHHHHh--cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh
Confidence 345567788888888999999864 455544 34544 88888877788889999999999999887 99999999999
Q ss_pred HHHHHHCCCC--cccEEEEEECCCce
Q 026997 162 KSMCYSLNVH--VLPFFRFYRGAHGR 185 (229)
Q Consensus 162 ~~l~~~~~I~--~~Pt~l~~~~g~g~ 185 (229)
+++++.+++. .+|+++++....++
T Consensus 139 ~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 9999999999 89999999754444
No 166
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.00044 Score=57.58 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=75.8
Q ss_pred CCCCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEE
Q 026997 97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (229)
Q Consensus 97 ~~~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~ 176 (229)
.-..|.+|+..+-..+....+.+-.|||+.|...-+-|+.+...+++++..|+.++|++|-.+..- ..|--..+||+
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl 165 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTL 165 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeE
Confidence 345788898877665555566788899999999999999999999999999999999998766432 45666789999
Q ss_pred EEEECCCceEEEEEecccCCC
Q 026997 177 RFYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 177 l~~~~g~g~~~~~~~G~~~~~ 197 (229)
++|.. |.+....+|+.+..
T Consensus 166 ~VY~~--G~lk~q~igll~lg 184 (240)
T KOG3170|consen 166 LVYHH--GALKKQMIGLLELG 184 (240)
T ss_pred EEeec--chHHhheehhhhhc
Confidence 99977 55555666655433
No 167
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.48 E-value=0.00041 Score=46.73 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=37.9
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHH----HHHCCCCcccEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFR 177 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~I~~~Pt~l 177 (229)
++.|+++||+.|+.+...+.+.. +.+..+|++++.++ .+..+...+|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 45688999999999999998664 66778888776543 3345777888773
No 168
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.46 E-value=0.00048 Score=48.78 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=40.6
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc---HHHHHHCCCCcccEEE
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFR 177 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~---~~l~~~~~I~~~Pt~l 177 (229)
++.-|+.|..+||+.|+..+..+.+. ++.+-.+|++++ ..+.+..+...+|.++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 33446779999999999999999743 566667777754 3455567889999984
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.43 E-value=0.00061 Score=64.70 Aligned_cols=71 Identities=14% Similarity=0.317 Sum_probs=60.7
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
++..+.+..-.++.-+--|.++.|++|......+++++..+++|..-.+|..+.++++++|+|.++|++++
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence 33445554434555688899999999999999999999999999999999999999999999999999964
No 170
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.36 E-value=0.00072 Score=46.89 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=39.5
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHC---CCCcccEEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRF 178 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~---~I~~~Pt~l~ 178 (229)
..|..++|+.|+..+..|++ .++.|-.+|+++++...+.+ +...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 45788999999999999975 36778888988877665544 8889999743
No 171
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.29 E-value=0.00064 Score=56.36 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcE---------------------------------------------
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ--------------------------------------------- 152 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~--------------------------------------------- 152 (229)
..++.++.|..+.|++|+.+++.+.+. ..++.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 467899999999999999999988751 11111
Q ss_pred EEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 153 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 153 f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
....+++++..++++++|.++|+|+ |.+|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G 181 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADG 181 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCC
Confidence 1222333466789999999999997 7675
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.28 E-value=0.0025 Score=61.19 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=70.2
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+++.+.+..-.+.+.|+.|+.+-|..|..+...++++++.-+.+.+...|..++.+++++|+|...|+|.+++++....-
T Consensus 355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~ 434 (555)
T TIGR03143 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTG 434 (555)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccc
Confidence 44666665545666788888889999999999999999877778888889888999999999999999999964323344
Q ss_pred EEEecccCC
Q 026997 188 IEEVGLAEV 196 (229)
Q Consensus 188 ~~~~G~~~~ 196 (229)
.++.|.+.+
T Consensus 435 i~f~g~P~G 443 (555)
T TIGR03143 435 LKFHGVPSG 443 (555)
T ss_pred eEEEecCcc
Confidence 566776654
No 173
>PHA03050 glutaredoxin; Provisional
Probab=97.24 E-value=0.0016 Score=49.26 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=38.4
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc-Cc----HHHHHHCCCCcccEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EH----KSMCYSLNVHVLPFF 176 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d-~~----~~l~~~~~I~~~Pt~ 176 (229)
|+.|..+||++|+..+..+++..-+++++..+.||-. .. ..+.+.-+...+|++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 5669999999999999999887655545455444421 12 235566788899998
No 174
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.20 E-value=0.0016 Score=55.79 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=46.7
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEE-----------------------------------------
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQ----------------------------------------- 155 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~----------------------------------------- 155 (229)
..++.+|+.|.-+-|++|+.+++.+.++.+. ++.+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3567889999999999999999998877542 222211
Q ss_pred ---EECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 156 ---VNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 156 ---Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
.+++++.+++++++|.++|||+ |.||
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G 211 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG 211 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC
Confidence 1223466789999999999998 5575
No 175
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.16 E-value=0.0013 Score=46.24 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=38.2
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHH----HHHCCCCcccEEEEEECC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~I~~~Pt~l~~~~g 182 (229)
|+.|+.+||+.|+..+..+++. ++.+-.+|++.+++. .+..+...+|++ ++ +|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i-~i-~g 57 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI-FI-GD 57 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE-EE-CC
Confidence 3568899999999999999764 455666677766544 344578889997 34 54
No 176
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.15 E-value=0.0021 Score=44.39 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=37.5
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHH----HHCCCC-cccEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVH-VLPFFR 177 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~I~-~~Pt~l 177 (229)
++.|..+||+.|+..+..+++. ++.|-.+|++++++.. +..+.. .+|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 4568899999999999998763 5777788888765543 335666 899773
No 177
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.09 E-value=0.0029 Score=45.26 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=40.0
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHH---HHCCCCcccEEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRF 178 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~---~~~~I~~~Pt~l~ 178 (229)
+..|..+||+.|+..+..|.+ .++.|-.+|++++++.. +..+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 556889999999999998854 46888899998877643 3457788999954
No 178
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.08 E-value=0.0015 Score=49.36 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=58.7
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHH---HHHHHHHhCCC-cEEEEEECcCcHHHHHHCCCCcccE
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHP---KICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF 175 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p---~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt 175 (229)
.+..++ .+++++.+.. +... |.|++.-|..+.+... .+-++.+.+++ +..+.++-+....|..+|++..+|+
T Consensus 10 g~~~vd-~~~ld~~l~~--~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVD-ADTLDAFLAA--PGDA-VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE--CCCHHHHHHC--CSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeec-hhhHHHHHhC--CCcE-EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCe
Confidence 344555 3556666643 3344 4466666666555544 67788888987 5666777667889999999999999
Q ss_pred EEEEECCCceEEEEEecc
Q 026997 176 FRFYRGAHGRVCIEEVGL 193 (229)
Q Consensus 176 ~l~~~~g~g~~~~~~~G~ 193 (229)
++||++ |+......|.
T Consensus 86 Lvf~R~--g~~lG~i~gi 101 (107)
T PF07449_consen 86 LVFFRD--GRYLGAIEGI 101 (107)
T ss_dssp EEEEET--TEEEEEEESS
T ss_pred EEEEEC--CEEEEEecCe
Confidence 999999 5555555554
No 179
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.06 E-value=0.0031 Score=43.70 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=38.2
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHH----HHHHCCCCcccEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFF 176 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~----l~~~~~I~~~Pt~ 176 (229)
++.|..+||+.|+.....+++. ++.+-.+|++++++ +.+..+-..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 4568899999999999999863 57777888887654 4555577888988
No 180
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.01 E-value=0.0027 Score=44.95 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=42.3
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEEC--cC------------------------------cHHHHHHCC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY--EE------------------------------HKSMCYSLN 169 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~--d~------------------------------~~~l~~~~~ 169 (229)
|+.|+.+.|+.|..+.+.+.++.+.+++ +.+....+ .. +..++.+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999998755543 55444432 21 124567899
Q ss_pred CCcccEEEEE
Q 026997 170 VHVLPFFRFY 179 (229)
Q Consensus 170 I~~~Pt~l~~ 179 (229)
+.++||+++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999876
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.99 E-value=0.002 Score=47.85 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=35.9
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHH-------HHHHCCCCcccEEEEEECC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-------MCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~-------l~~~~~I~~~Pt~l~~~~g 182 (229)
|+-|..+||+.|+..+..+.+. ++.|-.+|+|+.++ +.+..+...+|.+ |+ +|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi-~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FV-GG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EE-CC
Confidence 5558899999999999988765 34444556554322 3344467899997 34 64
No 182
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.86 E-value=0.0031 Score=49.01 Aligned_cols=40 Identities=33% Similarity=0.712 Sum_probs=33.7
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEE
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN 157 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd 157 (229)
..+++|+.|+.++|++|+.+.|.+.++..+++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 4678999999999999999999999988888776555444
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.86 E-value=0.0081 Score=44.41 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=37.8
Q ss_pred CeEEEEEE----CCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHH----HHHCCCCcccEEE
Q 026997 120 KLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFR 177 (229)
Q Consensus 120 k~vlV~F~----a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~I~~~Pt~l 177 (229)
.+|+|+-. .+||++|+.....+.+. ++.|..+|+++++++ .+..+...+|.++
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 45666554 38999999999999775 456777888766544 3445677888873
No 184
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.79 E-value=0.0058 Score=42.13 Aligned_cols=53 Identities=15% Similarity=0.316 Sum_probs=38.9
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHH---HHHHCCCCcccEEEEEECC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~---l~~~~~I~~~Pt~l~~~~g 182 (229)
++.|..+||+.|...+..+.+. ++.+..+|++++.. +.+..+...+|.+ |+ +|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i-fi-~g 58 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV-FI-DG 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE-EE-CC
Confidence 5668899999999999888753 56677777776542 3344688899997 34 54
No 185
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.79 E-value=0.0062 Score=52.79 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHh
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEM 147 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~ 147 (229)
..+.+|+.|.-+-|++|+.+++.+.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 567789999999999999999988766543
No 186
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.60 E-value=0.021 Score=41.23 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=55.5
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcHHHHHHCCCCcccEEEEEE
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
.+|++.+++.+.+ ..+++++|-|+.++|+ .....+.+++..+. ++.|+.++ +.++++.+++.. |++++|+
T Consensus 2 ~~i~s~~~l~~~~--~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFL--DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHh--ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence 4677888887755 4677889999999998 46677888888885 58887766 467788887754 8999997
Q ss_pred CC
Q 026997 181 GA 182 (229)
Q Consensus 181 ~g 182 (229)
+.
T Consensus 73 ~~ 74 (97)
T cd02981 73 PF 74 (97)
T ss_pred Cc
Confidence 64
No 187
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.51 E-value=0.011 Score=42.14 Aligned_cols=54 Identities=15% Similarity=0.335 Sum_probs=46.0
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
|+.|..+.|.-|......+.++.... .+.+-.||+++++++..+|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence 67899999999999999999876654 389999999999999999995 7998653
No 188
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.47 E-value=0.01 Score=43.13 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=39.5
Q ss_pred CCeEEEEEEC----CCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHH----HHHCCCCcccEEEEEECC
Q 026997 119 DKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 119 ~k~vlV~F~a----~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~I~~~Pt~l~~~~g 182 (229)
+.+|+|+-.. +||+.|+..+..+.+. ++.|..+|+++++++ .+..+...+|.+ |+ +|
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi-~g 71 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YV-NG 71 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EE-CC
Confidence 3456665443 7999999999998776 356777777766554 344577889997 33 64
No 189
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.36 E-value=0.067 Score=41.67 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=60.7
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCC---Chh-H-hhhHHHHHHHHHhCCC--cEEEEEECcCcHHHHHHCCCC
Q 026997 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPG---CGG-C-KALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH 171 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~W---C~~-C-k~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~I~ 171 (229)
+++.++++.+.+.+.... ++.=+|-| -+. |.. + ..+...+.+++++|.+ +.|+.+|.+++..+.+.|++.
T Consensus 2 ~~~~~l~~~~~~~~~C~~--~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEE--KQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccC--CCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence 578899998887776632 44444545 332 222 3 3557788899999975 899999999999999999995
Q ss_pred --cccEEEEEECCC
Q 026997 172 --VLPFFRFYRGAH 183 (229)
Q Consensus 172 --~~Pt~l~~~~g~ 183 (229)
++|+++++...+
T Consensus 79 ~~~~P~v~i~~~~~ 92 (130)
T cd02983 79 GFGYPAMVAINFRK 92 (130)
T ss_pred ccCCCEEEEEeccc
Confidence 499999996643
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.013 Score=41.71 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=36.5
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH-----HHHHHC-CCCcccEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSL-NVHVLPFFR 177 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----~l~~~~-~I~~~Pt~l 177 (229)
++.|..++|++|+..+..+++. ++.|..+|++.+. +..++. +...+|.++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~ 58 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF 58 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE
Confidence 5668899999999999998733 5666666666543 344555 789999985
No 191
>PRK10638 glutaredoxin 3; Provisional
Probab=96.24 E-value=0.017 Score=41.01 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=36.7
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHH----HHHHCCCCcccEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFF 176 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~----l~~~~~I~~~Pt~ 176 (229)
++.|..+||+.|+.....+++. ++.+..+|++++.+ +.+..+...+|++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 5567789999999999998764 46666778876654 3445577789987
No 192
>PRK10824 glutaredoxin-4; Provisional
Probab=96.03 E-value=0.028 Score=43.08 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=35.0
Q ss_pred CeEEEEEEC----CCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHH----HHCCCCcccEEEEEECC
Q 026997 120 KLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 120 k~vlV~F~a----~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~I~~~Pt~l~~~~g 182 (229)
.+|+|+--+ |||++|+.....|.++. +.+..+|++++.++. +.-+...+|.+ |-+|
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G 78 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDG 78 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECC
Confidence 456665443 69999999999998763 444456666655543 33355566665 3464
No 193
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.036 Score=44.78 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=55.4
Q ss_pred cCCCeEEEEEE-CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECc---------------------CcHHHHHHCCCCc
Q 026997 117 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHV 172 (229)
Q Consensus 117 ~~~k~vlV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d---------------------~~~~l~~~~~I~~ 172 (229)
..+++||++|| ..+++.|-...-.+.+...++. ++.++.|..| .+..+++.|++-.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 46779999999 7899999988888887776655 4777777654 3456788888744
Q ss_pred ------------ccEEEEEECCCceEEEEEecccCCC
Q 026997 173 ------------LPFFRFYRGAHGRVCIEEVGLAEVP 197 (229)
Q Consensus 173 ------------~Pt~l~~~~g~g~~~~~~~G~~~~~ 197 (229)
.++.+++ |.+|++......+....
T Consensus 108 ~k~~~gk~~~~~~R~TfvI-d~dG~I~~~~~~v~~~~ 143 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVI-DPDGKIRYVWRKVKVKG 143 (157)
T ss_pred ccccCccccccccceEEEE-CCCCeEEEEecCCCCcc
Confidence 2444444 55677777774444433
No 194
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.058 Score=47.95 Aligned_cols=88 Identities=17% Similarity=0.293 Sum_probs=65.1
Q ss_pred CCeEEeCCHhHHHHHHHcc-CCCeEEEEEECC----CChhHhhhHHHHHHHHHhC----C-----CcEEEEEECcCcHHH
Q 026997 99 PNMREVASAQDLVESLWHA-GDKLVVVDFFSP----GCGGCKALHPKICQLAEMN----P-----DVQFLQVNYEEHKSM 164 (229)
Q Consensus 99 ~~~~~i~s~e~~~~~l~~~-~~k~vlV~F~a~----WC~~Ck~~~p~l~~la~~~----~-----~v~f~~Vd~d~~~~l 164 (229)
..+..++++ .+...+... .+-.++|.|.|. .|.-|+.....+.-++..+ + .+-|..||.|+.+++
T Consensus 40 ~~VI~~n~d-~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 40 SGVIRMNDD-KFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCeEEecCc-chhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 345555553 355555422 344567777754 6999999999998888753 1 167999999999999
Q ss_pred HHHCCCCcccEEEEEECCCceEE
Q 026997 165 CYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 165 ~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
.++++++.+|++.+|...+|...
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccc
Confidence 99999999999999976655544
No 195
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=95.17 E-value=0.15 Score=46.17 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=55.4
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhH-----HHHHHHHHh---CCCcEEEEEECcCcHHHHHHCCCC
Q 026997 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALH-----PKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVH 171 (229)
Q Consensus 100 ~~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~-----p~l~~la~~---~~~v~f~~Vd~d~~~~l~~~~~I~ 171 (229)
.+..++. .+|.+.+. +.+.++|+||.+--..--..+ ..+-+|+.+ ..++.|+.||..+...+++++++.
T Consensus 35 RVi~Lne-KNfk~~lK--kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 35 RVIDLNE-KNFKRALK--KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp -CEEE-T-TTHHHHHH--H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred ceEEcch-hHHHHHHH--hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 5566665 55777673 467889999988743332222 222344443 357999999999999999999999
Q ss_pred cccEEEEEECCCceEEEEE
Q 026997 172 VLPFFRFYRGAHGRVCIEE 190 (229)
Q Consensus 172 ~~Pt~l~~~~g~g~~~~~~ 190 (229)
..+++.+|++ |+++...
T Consensus 112 E~~SiyVfkd--~~~IEyd 128 (383)
T PF01216_consen 112 EEGSIYVFKD--GEVIEYD 128 (383)
T ss_dssp STTEEEEEET--TEEEEE-
T ss_pred ccCcEEEEEC--CcEEEec
Confidence 9999999999 5555544
No 196
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.15 Score=38.35 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=34.8
Q ss_pred CeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH-HH----HHHCCCCcccEEE
Q 026997 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SM----CYSLNVHVLPFFR 177 (229)
Q Consensus 120 k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-~l----~~~~~I~~~Pt~l 177 (229)
.+|| -|.-+||+.|+.++..+.+ .-....++.+|-+++. ++ .+--+...+|.++
T Consensus 14 ~~VV-ifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF 72 (104)
T KOG1752|consen 14 NPVV-IFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF 72 (104)
T ss_pred CCEE-EEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE
Confidence 3444 4899999999998887776 1223567777765433 33 3233456788864
No 197
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.87 E-value=0.072 Score=49.40 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=38.7
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHH---HH---------CCCCcccEEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YS---------LNVHVLPFFRF 178 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~---~~---------~~I~~~Pt~l~ 178 (229)
|+-|..+||++|+..+..+.+. ++.|-.+|+++.+... ++ .+...+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6678999999999999988764 6778888888766322 22 36788999854
No 198
>PTZ00062 glutaredoxin; Provisional
Probab=94.73 E-value=0.17 Score=42.66 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCeEEEEEE----CCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHH----HHCCCCcccEEE
Q 026997 119 DKLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFR 177 (229)
Q Consensus 119 ~k~vlV~F~----a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~I~~~Pt~l 177 (229)
..+|+|+-- .|||+.|+.+...|.+. ++.|..+|++++.++. +.-+...+|.++
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 345555443 37999999999888754 5667778887766543 333555677664
No 199
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.53 E-value=0.073 Score=42.53 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=31.6
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEE
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFL 154 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~ 154 (229)
..++.|+.|+...|++|+.+++.+.++.+++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 467899999999999999999999999988764 4443
No 200
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=94.14 E-value=0.8 Score=35.46 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=52.1
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHH-H---hCCCcEEEEEECc-----CcHHHHHHCCC--CcccEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-E---MNPDVQFLQVNYE-----EHKSMCYSLNV--HVLPFF 176 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la-~---~~~~v~f~~Vd~d-----~~~~l~~~~~I--~~~Pt~ 176 (229)
=.|+..+ .+.+.+||.|=... |-=.-+..+.+++ + .-+++.++.|.+. +|.+|+++|+| +.+|.+
T Consensus 12 ~tFdKvi--~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 12 LTFDKVI--PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp THHHHHG--GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred eehhhee--ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 3466666 45689999994322 3334455666666 3 3456889988875 48999999999 568999
Q ss_pred EEEECCCceEEEE
Q 026997 177 RFYRGAHGRVCIE 189 (229)
Q Consensus 177 l~~~~g~g~~~~~ 189 (229)
.+|.++...++..
T Consensus 88 ~LF~~~~~~pv~~ 100 (126)
T PF07912_consen 88 YLFVGDKEEPVRY 100 (126)
T ss_dssp EEEESSTTSEEEE
T ss_pred EEecCCCCCCccC
Confidence 9998766666654
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.11 E-value=0.28 Score=37.14 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCeEEEEEECC---CChhHhhhHHHHHHHHHhCC-C-cEEEEEECcCcHHHHHHCCCCc----ccEEEEEEC
Q 026997 119 DKLVVVDFFSP---GCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRG 181 (229)
Q Consensus 119 ~k~vlV~F~a~---WC~~Ck~~~p~l~~la~~~~-~-v~f~~Vd~d~~~~l~~~~~I~~----~Pt~l~~~~ 181 (229)
.+++++++-.+ --..-..+...+.+++++++ + +.|+.+|.++...+.+.||+.. .|++.++..
T Consensus 15 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 15 KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC
Confidence 33455543232 33445678889999999998 4 9999999998878899999985 999998853
No 202
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.11 E-value=0.14 Score=40.11 Aligned_cols=41 Identities=24% Similarity=0.516 Sum_probs=33.7
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhC--C-CcEEEEEEC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--P-DVQFLQVNY 158 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~--~-~v~f~~Vd~ 158 (229)
..+++|+.|+..-|++|+.+.+.+.++.+++ + .+.|...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4678999999999999999999999998887 4 377777654
No 203
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=93.87 E-value=0.49 Score=35.67 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=48.5
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHh---CCC-cEEEEEECcCcHHHHHHCCCCc--ccEEEEEEC
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPD-VQFLQVNYEEHKSMCYSLNVHV--LPFFRFYRG 181 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~---~~~-v~f~~Vd~d~~~~l~~~~~I~~--~Pt~l~~~~ 181 (229)
.+.+..+.|+ --..-..+...+.+++++ +.+ +.|+.+|.++.....+.||+.. +|.+.+...
T Consensus 15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcc
Confidence 4445555566 222346788899999999 876 9999999998877999999998 899988854
No 204
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=93.82 E-value=1.1 Score=32.91 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=48.9
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+++...+..-.+.+.++.|..+. ..|..+...++++++.-+.+.+-..+.++ ..|+|.+..+| ....
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~-~~~g 74 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG-EDTG 74 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC-Cccc
Confidence 45555555434555555555555 99999999999999987766664433221 37999998775 2334
Q ss_pred EEEecccCC
Q 026997 188 IEEVGLAEV 196 (229)
Q Consensus 188 ~~~~G~~~~ 196 (229)
-++.|.+.+
T Consensus 75 IrF~GiP~G 83 (94)
T cd02974 75 IRFAGIPMG 83 (94)
T ss_pred EEEEecCCc
Confidence 566666543
No 205
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.52 Score=46.11 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=59.7
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhHhhhHHH-H--HHHHHh-CCCcEEEEEECcCcHHHHHHCC--------CCccc
Q 026997 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-I--CQLAEM-NPDVQFLQVNYEEHKSMCYSLN--------VHVLP 174 (229)
Q Consensus 107 ~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~-l--~~la~~-~~~v~f~~Vd~d~~~~l~~~~~--------I~~~P 174 (229)
.+.|...- ..+|||+|.+..+||-=|+.|... + .++++. +.+.+-++||-++-|++-+.|. --++|
T Consensus 33 ~eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 33 EEAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred HHHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 35565544 479999999999999999999742 2 134443 2347888999998887766554 66899
Q ss_pred EEEEEECCCceEEEEEeccc
Q 026997 175 FFRFYRGAHGRVCIEEVGLA 194 (229)
Q Consensus 175 t~l~~~~g~g~~~~~~~G~~ 194 (229)
-.+|... +|++..-.+=++
T Consensus 111 LtVfLTP-d~kPFfagTY~P 129 (667)
T COG1331 111 LTVFLTP-DGKPFFAGTYFP 129 (667)
T ss_pred eeEEECC-CCceeeeeeecC
Confidence 9988844 577666544443
No 206
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.68 E-value=0.26 Score=39.30 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCeEEEEEECCCChhHhhh-HHHHHHHHHhCC--Cc-EEEEEECcC---cHHHHHHCCC
Q 026997 119 DKLVVVDFFSPGCGGCKAL-HPKICQLAEMNP--DV-QFLQVNYEE---HKSMCYSLNV 170 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~-~p~l~~la~~~~--~v-~f~~Vd~d~---~~~l~~~~~I 170 (229)
+..+|+.|.+.||+.|... .+.+.+..+++. ++ .++.|..|. +.+.++++++
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 3444555559999999998 888888877764 46 577777764 3334555554
No 207
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.42 E-value=0.2 Score=41.81 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCeEEEEEECCCChhHhhhHHHH---HHHHHhCC-CcEEEEEE
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVN 157 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~f~~Vd 157 (229)
+++.||+|+.-.|++|..+++.+ ..+.+.++ ++.|..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 46789999999999999999976 78888887 46665544
No 208
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.16 E-value=0.61 Score=32.69 Aligned_cols=57 Identities=5% Similarity=-0.005 Sum_probs=44.9
Q ss_pred EEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 122 VVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 122 vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
.+..|-+.--+..+.....+.++.+++.+ +.+=.||+.+++++++.++|-.+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 34445455557888888888888777643 7888899999999999999999999863
No 209
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=91.35 E-value=1.4 Score=33.02 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=53.8
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECcC--cHHHHHHCCCC----ccc
Q 026997 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVH----VLP 174 (229)
Q Consensus 102 ~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~--~~~l~~~~~I~----~~P 174 (229)
..|++..+|...+.. ..-|+|.|..+- ..-......+.++++...+ -.++.|||.+ ...||+.+.|. --|
T Consensus 4 e~i~d~KdfKKLLRT--r~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLLRT--RNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHHhh--cCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 457888899888843 334666555443 3333344467777877766 6888899986 78899999998 566
Q ss_pred EE-EEEECCC
Q 026997 175 FF-RFYRGAH 183 (229)
Q Consensus 175 t~-l~~~~g~ 183 (229)
.. .-|+||+
T Consensus 81 ~~LkHYKdG~ 90 (112)
T cd03067 81 VELKHYKDGD 90 (112)
T ss_pred chhhcccCCC
Confidence 54 4567764
No 210
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=89.83 E-value=5.3 Score=29.22 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=50.2
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhC-CCcEEEEEECcCcHHHHHHCCCCcccEEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~ 179 (229)
+..|++.+++.+.+.. .+..++|-|+.+--. .....+.+++..+ .++.|+... +.++.+.+++. .|.+++|
T Consensus 2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 4678888888887731 355666666665444 3556677888887 568886543 45677778765 6999999
Q ss_pred EC
Q 026997 180 RG 181 (229)
Q Consensus 180 ~~ 181 (229)
++
T Consensus 74 ~~ 75 (102)
T cd03066 74 EP 75 (102)
T ss_pred CC
Confidence 66
No 211
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.76 E-value=1.4 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=30.9
Q ss_pred CChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHH----HHHCCC----CcccEEE
Q 026997 130 GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNV----HVLPFFR 177 (229)
Q Consensus 130 WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~I----~~~Pt~l 177 (229)
+|+.|+.++..|+.+ +|.|-.+|++.+++. .+.++. ..+|.++
T Consensus 15 t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF 65 (147)
T cd03031 15 TFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF 65 (147)
T ss_pred cChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE
Confidence 899999999998765 477888888776543 344443 5677664
No 212
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=89.32 E-value=4 Score=30.04 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=50.1
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhC-CCcEEEEEECcCcHHHHHHCCCCcccEEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~ 179 (229)
+.+|++.+++.+.+. .+++++|-|+.+--. .....+.+++..+ .++.|+... +..+.+.+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence 356788888887773 566777777766444 4566777888887 568886544 3567788888 7888888
Q ss_pred EC
Q 026997 180 RG 181 (229)
Q Consensus 180 ~~ 181 (229)
+.
T Consensus 72 ~p 73 (104)
T cd03069 72 RP 73 (104)
T ss_pred ec
Confidence 54
No 213
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=89.14 E-value=0.11 Score=46.13 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=53.8
Q ss_pred HHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEE-CcCcHHHHHHCCCCcccEEEEEE
Q 026997 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 110 ~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd-~d~~~~l~~~~~I~~~Pt~l~~~ 180 (229)
..+.+-.++..++-+.||++||+.-+..+|.++-....|+.+....++ ...-+++..+|++++.|++++..
T Consensus 67 l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 67 LLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred HHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec
Confidence 344443344678999999999999999999999888888865544443 12356778899999999998863
No 214
>PRK09301 circadian clock protein KaiB; Provisional
Probab=89.13 E-value=1.3 Score=33.17 Aligned_cols=61 Identities=3% Similarity=0.023 Sum_probs=49.9
Q ss_pred CCCeEEEEEECCCChhHhhhHHHHHHHHHhC-CC-cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~-~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
....++=.|.+.--+..+..-..+.++.+++ ++ +.+=.||+.+++++++.++|-.+||++=
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhh
Confidence 3456777778888888888888888887754 33 7777899999999999999999999763
No 215
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.03 E-value=1.4 Score=32.10 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=47.4
Q ss_pred CeEEEEEECCCChhHhhhHHHHHHHHHhC-CC-cEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 120 KLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 120 k~vlV~F~a~WC~~Ck~~~p~l~~la~~~-~~-v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
..++=.|.|.--+..+..-..+.++.+++ ++ +.+=-||+.+++++++.++|-.+||++=
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSK 63 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhh
Confidence 34555667888888888888888887654 33 7777899999999999999999999863
No 216
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=88.87 E-value=2.1 Score=33.97 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhCC-CcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEEEEEe
Q 026997 137 LHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCIEEV 191 (229)
Q Consensus 137 ~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~~~ 191 (229)
....+.++++.+. ++.|+.++ +.++++.+++.. |++++|++++++......
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~ 59 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDG 59 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceeccc
Confidence 4567788888887 58999887 677999999999 999999987665554443
No 217
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=85.54 E-value=12 Score=27.72 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=49.5
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhC-CCcEEEEEECcCcHHHHHHCCCCcccEEEEE
Q 026997 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (229)
Q Consensus 101 ~~~i~s~e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~ 179 (229)
+.+|.+.+++.+.+.. .++.+||-|+..--+ .....+.+++..+ .++.|+... +..+.+.+++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence 4678888888887743 325666666665433 4566777888888 568886544 35777888876 5667777
Q ss_pred EC
Q 026997 180 RG 181 (229)
Q Consensus 180 ~~ 181 (229)
+.
T Consensus 74 rp 75 (107)
T cd03068 74 QP 75 (107)
T ss_pred Cc
Confidence 44
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.04 E-value=1.1 Score=33.05 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=23.9
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
..|+.++|+.|+.....+++. ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 468899999999998887663 45566666654
No 219
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.96 E-value=1.6 Score=33.44 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.7
Q ss_pred CeEEEEEECCCChhHhhhHHHHHHHHHhCC
Q 026997 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNP 149 (229)
Q Consensus 120 k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~ 149 (229)
|.+++.|.-|-|+.|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999988888764
No 220
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=84.04 E-value=5.5 Score=30.13 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.9
Q ss_pred cHHHHHHCCCCcccEEEEEEC
Q 026997 161 HKSMCYSLNVHVLPFFRFYRG 181 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~~ 181 (229)
+|.+.++|+|+.+|++++-++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 389999999999999998866
No 221
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=83.52 E-value=4.2 Score=27.37 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=33.9
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC-cHHHHHHCCCCcccEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~I~~~Pt~l 177 (229)
+.|+.+||+.|+...-.+.+..- ++.+..+|... ..++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 34678999999988777654432 24555666543 34565656677899985
No 222
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=83.13 E-value=2.5 Score=31.93 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=26.1
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~ 162 (229)
..|+.++|+.|+.....+++ .++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 35789999999999988876 35667777776543
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.49 E-value=12 Score=35.67 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=51.0
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+++.+.+.. -.++|-+.++.+-|..|..+...++++++.-+.+.+...+.++ ...|+|.++.+|+ ..-
T Consensus 8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~-~~~ 75 (515)
T TIGR03140 8 AQLKSYLAS-LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGA-DTG 75 (515)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCc-ccc
Confidence 455555554 3445555555557999999999999999987777664433221 3469999886654 244
Q ss_pred EEEecccCCC
Q 026997 188 IEEVGLAEVP 197 (229)
Q Consensus 188 ~~~~G~~~~~ 197 (229)
-++.|.+.+.
T Consensus 76 i~f~g~P~g~ 85 (515)
T TIGR03140 76 IRFAGIPGGH 85 (515)
T ss_pred eEEEecCCcH
Confidence 5666666543
No 224
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.05 E-value=1.2 Score=38.40 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=38.0
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC-cEEEEEECc
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE 159 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d 159 (229)
++++|+||+|.+--|++=+.-.+.+++++++|.+ +.|+.|-+.
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 5799999999999999999999999999999998 567776554
No 225
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.61 E-value=13 Score=35.33 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=50.8
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+++...+.. -.++|-+.++.+-|..|..+...++++++.-+.+.+-..+.+ ...|+|.+.++|+ ...
T Consensus 8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~-~~~ 74 (517)
T PRK15317 8 TQLKQYLEL-LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGE-DTG 74 (517)
T ss_pred HHHHHHHHh-CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCc-cce
Confidence 445555543 344555656666899999999999999998777666432211 3479999987653 244
Q ss_pred EEEecccCCC
Q 026997 188 IEEVGLAEVP 197 (229)
Q Consensus 188 ~~~~G~~~~~ 197 (229)
.++.|.+.+.
T Consensus 75 i~f~g~P~g~ 84 (517)
T PRK15317 75 VRFAGIPMGH 84 (517)
T ss_pred EEEEecCccH
Confidence 5666766543
No 226
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=80.04 E-value=5.5 Score=27.10 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=33.4
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECCCceEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g~g~~~ 187 (229)
+..|+.+.|+.|+..+-.+....-. +.+..+|.....++ +.-+...+|++..=.+|+|...
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l 62 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL 62 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE
Confidence 3457779999999998666544222 23333333222333 3345567998864322234443
No 227
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=79.29 E-value=2.6 Score=31.40 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=23.5
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 468899999999988877654 45555666554
No 228
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.27 E-value=3.1 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=24.5
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccC
Confidence 357899999999999887653 56677777654
No 229
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=78.11 E-value=8.6 Score=33.41 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=39.8
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCC-CCcccEEEEEE
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFRFYR 180 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~-I~~~Pt~l~~~ 180 (229)
..+|+.+++..+.||+.|...+=.+-..-.+|.++.+ .-+.... .+ --.+||++|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l-~~~~S~~------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSL-EYHYSDP------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeee-EEeecCc------ccCCCCCCeEEEec
Confidence 5789999999999999999998666655567777622 2222211 22 25789998773
No 230
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=77.16 E-value=4.5 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=24.4
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~ 161 (229)
+..|+.++|+.|+.....+++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 4567899999999988777543 555666666543
No 231
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=76.59 E-value=2.8 Score=26.84 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=31.5
Q ss_pred EEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH--HHHHHCCCCcccEEE
Q 026997 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK--SMCYSLNVHVLPFFR 177 (229)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~--~l~~~~~I~~~Pt~l 177 (229)
.|+.++|+.|+...-.+....-. +....++.++.. ++.+...-..+|++.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 54 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLE 54 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEE
Confidence 46788999999888777655322 344445443322 244556677889775
No 232
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=76.55 E-value=0.95 Score=32.53 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=39.8
Q ss_pred CCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 128 SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 128 a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
+.--+..+.....+..+.+.+- .+.+-.||+.+++++++.++|-.+||++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 4444556677777888877643 3888899999999999999999999975
No 233
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=74.86 E-value=6.7 Score=26.00 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=33.5
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc----CcHHHHHHCCCCcccEEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d----~~~~l~~~~~I~~~Pt~l~ 178 (229)
..|+.++|+.|+..+-.+....-. +....+|.. ...++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 356788999999998887665333 334445432 2345555556667899864
No 234
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=74.51 E-value=5.7 Score=34.14 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred HHccCCCeEEEEEECCCChhHhhhHHHHHHHHHh-----CCCcEEEEEECc
Q 026997 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-----NPDVQFLQVNYE 159 (229)
Q Consensus 114 l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~-----~~~v~f~~Vd~d 159 (229)
+.+..++++||-+-..+|..|..-...|+.|..+ +++|.|+.||-.
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4456789999999999999999999999888743 567999999954
No 235
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=73.27 E-value=7.3 Score=26.03 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=28.6
Q ss_pred EEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
.++.++|+.|+..+-.+....-. +....++.++.....+...-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 46688999999887776544222 233334433333333344445688874
No 236
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=71.44 E-value=8.6 Score=31.13 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCCeEEEEEECCCC-hhHhhhHHHHHHHHHh----CCCcEEEEEECcC
Q 026997 118 GDKLVVVDFFSPGC-GGCKALHPKICQLAEM----NPDVQFLQVNYEE 160 (229)
Q Consensus 118 ~~k~vlV~F~a~WC-~~Ck~~~p~l~~la~~----~~~v~f~~Vd~d~ 160 (229)
.+|++||+|.=+.| ..|-.+...+.++.+. ..++.++.|.+|.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 68999999988888 6798887777766553 3358888887773
No 237
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.49 E-value=12 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=24.1
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
+..|+.++|+.|+.....+++. ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCC
Confidence 3457789999999988888663 55566666654
No 238
>PRK12559 transcriptional regulator Spx; Provisional
Probab=67.77 E-value=9.3 Score=29.66 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=23.2
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
+..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 4568899999999988776543 45555555543
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.34 E-value=23 Score=32.69 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=58.8
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEEEECC
Q 026997 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 108 e~~~~~l~~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
+++.+.+..-.+..-+=-|++--|..|-..-..++-++-.+|++....||.--.++=.+.-+|..+||++ .||
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnG 177 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNG 177 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEE--Ecc
Confidence 5666667665666777778899999999999999999999999999999976655555667999999975 355
No 240
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=66.83 E-value=8.2 Score=30.13 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=19.8
Q ss_pred cHHHHHHCCCCcccEEEEEECC
Q 026997 161 HKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
+|.+.++|+|+.+|+|++.+++
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCC
Confidence 4899999999999999999764
No 241
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=65.84 E-value=12 Score=30.44 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.7
Q ss_pred EEECCCChhHhhhHHHHHHHHHhCCC
Q 026997 125 DFFSPGCGGCKALHPKICQLAEMNPD 150 (229)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~ 150 (229)
+|.-|.|+.|-.+.|.+.++..+|++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999986
No 242
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=65.33 E-value=4.6 Score=32.84 Aligned_cols=20 Identities=5% Similarity=0.340 Sum_probs=16.4
Q ss_pred cHHHHHHCCCCcccEEEEEE
Q 026997 161 HKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~ 180 (229)
...++++++|+++||++||.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHHcCCCCCCEEEEEe
Confidence 46789999999999999997
No 243
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.96 E-value=32 Score=23.42 Aligned_cols=49 Identities=8% Similarity=0.138 Sum_probs=29.9
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc----HHHHHHCCCCcccEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFR 177 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~----~~l~~~~~I~~~Pt~l 177 (229)
..++.++|+.|+..+-.+.+. ++.|-.++++.. .++.+.-.-..+|+++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~ 55 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLV 55 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEE
Confidence 456678999999887777554 343433454432 2343434556789874
No 244
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=13 Score=31.27 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=29.4
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEE
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQ 155 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~ 155 (229)
.+.+++.|.-.-|++|+...|.+.+....++++.+..
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 4789999999999999999999988766666654333
No 245
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=63.40 E-value=20 Score=23.74 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=31.5
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC-cHHHHHHCCCCcccEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~I~~~Pt~l 177 (229)
..|+.++|+.|+...-.+....-. +....+|.+. .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457789999999998777544322 3333444433 34455555566789774
No 246
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.03 E-value=11 Score=30.11 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=28.0
Q ss_pred EEEEEECCCChhHhhhHHHHHHHHHhCCCcEEE
Q 026997 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFL 154 (229)
Q Consensus 122 vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~ 154 (229)
.|.+|+-.-|+.|-...+.+.++.+.++++.+-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 367889999999999999999999999664443
No 247
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=60.32 E-value=13 Score=24.73 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=33.2
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC----cHHHHHHCCCCcccEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~----~~~l~~~~~I~~~Pt~l 177 (229)
..|+.++|+.|+..+-.+....-. +....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 357889999999887777655332 4444555432 35565555566799995
No 248
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=59.87 E-value=27 Score=27.79 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=34.6
Q ss_pred EEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCC
Q 026997 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171 (229)
Q Consensus 122 vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~ 171 (229)
-++.|+.|-||-|......++ -.++.+-.+..++-..+-++++|.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-----~~Gf~Vk~~~~~d~~alK~~~gIp 71 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-----ANGFEVKVVETDDFLALKRRLGIP 71 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-----hCCcEEEEeecCcHHHHHHhcCCC
Confidence 477799999999998877775 236777777777777777777765
No 249
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=59.71 E-value=46 Score=27.84 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=43.0
Q ss_pred CCCeEEEEEECCCC-hhHhhhHHHHHHHHHhCC-----CcEEEEEECc---CcHHHHHHCCC-CcccEEEEEEC
Q 026997 118 GDKLVVVDFFSPGC-GGCKALHPKICQLAEMNP-----DVQFLQVNYE---EHKSMCYSLNV-HVLPFFRFYRG 181 (229)
Q Consensus 118 ~~k~vlV~F~a~WC-~~Ck~~~p~l~~la~~~~-----~v~f~~Vd~d---~~~~l~~~~~I-~~~Pt~l~~~~ 181 (229)
.+++++|+|.=+.| ..|-.+...+.++.++.. +++++.|.+| +.+++.++|.. ...|.+....+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeC
Confidence 78999999987777 578888887777666543 3555555554 34666777776 55565655533
No 250
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.28 E-value=22 Score=25.22 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=33.9
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEEC------------cCcHHH--HHHCCCCcccEEEEEECC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY------------EEHKSM--CYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~------------d~~~~l--~~~~~I~~~Pt~l~~~~g 182 (229)
+.|++.-|+.|.....+++++.-.| .++.|-- |..++. .+..+--|+|.++.= ||
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y---d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~ 73 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY---DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DG 73 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc---eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CC
Confidence 5699999999987777776663333 2322211 122222 456677889998753 64
No 251
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=55.13 E-value=41 Score=23.68 Aligned_cols=52 Identities=6% Similarity=0.017 Sum_probs=32.7
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc-HHHHHHCCCCcccEEE
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFR 177 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-~~l~~~~~I~~~Pt~l 177 (229)
+..|+.+.|+.|+...-.+....- ++.+..+|.... .++.+......+|++.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~ 71 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALE 71 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEE
Confidence 444668889999988766654422 245555655433 3455555567889986
No 252
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.52 E-value=22 Score=27.55 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=22.8
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
+..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 3457789999999988766542 45566666543
No 253
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.04 E-value=8.6 Score=30.87 Aligned_cols=22 Identities=9% Similarity=0.233 Sum_probs=18.2
Q ss_pred cHHHHHHCCCCcccEEEEEECC
Q 026997 161 HKSMCYSLNVHVLPFFRFYRGA 182 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~~g 182 (229)
+.+.+.+++|.++|||++..++
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCC
Confidence 4566788999999999999664
No 254
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.11 E-value=21 Score=26.33 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=36.0
Q ss_pred EECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCC--cccEEEEE-ECC
Q 026997 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH--VLPFFRFY-RGA 182 (229)
Q Consensus 126 F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~--~~Pt~l~~-~~g 182 (229)
||-.+|+-|......+.+. .....+.|+.+.-++..++.+.+++. ..-+.+.. .+|
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 60 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG 60 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC
Confidence 7889999999999988877 22344777666434445555666665 34444443 343
No 255
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=97 Score=23.24 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred CCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCcHHHHHHCC-CCcccEE-EEEECC
Q 026997 128 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFF-RFYRGA 182 (229)
Q Consensus 128 a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~-I~~~Pt~-l~~~~g 182 (229)
.|-||........+... .-+.|..+|+=+++++-+.+. ...+||| -+|-+|
T Consensus 27 ~P~CGFS~~~vqiL~~~----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 27 FPQCGFSAQAVQILSAC----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred CCCCCccHHHHHHHHHc----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 56677766655554333 227899999988888876543 3468888 467775
No 256
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=46.82 E-value=61 Score=27.41 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=18.0
Q ss_pred cHHHHHHCCCCcccEEEEEE
Q 026997 161 HKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~ 180 (229)
+|.+.++|+|..+|+|++.-
T Consensus 151 DP~lF~~F~I~~VPafVv~C 170 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC 170 (212)
T ss_pred CHHHHHhcCCccccEEEEEc
Confidence 48999999999999999873
No 257
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.53 E-value=20 Score=28.61 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.1
Q ss_pred cHHHHHHCCCCcccEEEEEECCC
Q 026997 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
+...+.+++|.++|||++ +|+
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g~ 176 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NGK 176 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TTT
T ss_pred HHHHHHHcCCcccCEEEE--CCE
Confidence 456688999999999998 643
No 258
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=45.48 E-value=31 Score=27.54 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.8
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCC
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNP 149 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~ 149 (229)
|.+|+-+.|+.|-...+.+.++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668899999999999999999999984
No 259
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=44.41 E-value=86 Score=21.02 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=34.3
Q ss_pred EECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC-cHHHHHHCCCCcccEEE
Q 026997 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 126 F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~I~~~Pt~l 177 (229)
++.++|+.|+...=.+....- ++.+..++..+ ..++.+...-..+|++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~ 51 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV 51 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE
Confidence 678999999998776654422 25566666555 35666667777899996
No 260
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=44.36 E-value=13 Score=28.29 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.1
Q ss_pred cHHHHHHCCCCcccEEEE
Q 026997 161 HKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~ 178 (229)
+..++.+++|.++||+++
T Consensus 118 ~~~~~~~~gi~gtPt~~v 135 (154)
T cd03023 118 NRQLARALGITGTPAFII 135 (154)
T ss_pred HHHHHHHcCCCcCCeEEE
Confidence 456788999999999875
No 261
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=40.03 E-value=1.4e+02 Score=24.99 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=35.3
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEE--EECcC----------------cHHHHHHCCCCcccEEEEEECCC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQ--VNYEE----------------HKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~--Vd~d~----------------~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
=.|.+..|..|=.....|.+|+.+ ++|..+. ||+.+ +...++.++...+-|=-++-||.
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 357789999999999999999998 4765554 44432 23467778777754444445765
No 262
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.92 E-value=1e+02 Score=24.90 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=48.7
Q ss_pred CCCeEEEE-EECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC---cHHHHHHCCCCcccEEEEEEC
Q 026997 118 GDKLVVVD-FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE---HKSMCYSLNVHVLPFFRFYRG 181 (229)
Q Consensus 118 ~~k~vlV~-F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~---~~~l~~~~~I~~~Pt~l~~~~ 181 (229)
.+|..++. |=+=--+.|...-..|++.+.++.++.++.|.+|- +.++|...||+.+=++--|++
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~ 110 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRD 110 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhh
Confidence 45555555 44666799999999999999999999999999884 677788888887555555544
No 263
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.23 E-value=1e+02 Score=19.93 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=30.7
Q ss_pred EEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC----cHHHHHHCCCCcccEEE
Q 026997 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~----~~~l~~~~~I~~~Pt~l 177 (229)
.|+.+.|+.|+..+-.+....-. +....+|... ..++.+...-..+|++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLE 56 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEE
Confidence 46788999999887776554322 4444555422 23444444456789886
No 264
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=37.69 E-value=18 Score=29.97 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=16.5
Q ss_pred cHHHHHHCCCCcccEEEEEECCC
Q 026997 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
..+.+++++|+++|||++ ||+
T Consensus 156 ~~~~a~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 156 QEKAAADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHHHHHcCCCCCCEEEE--CCE
Confidence 345678999999999986 643
No 265
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=37.58 E-value=81 Score=23.66 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=43.6
Q ss_pred cCCCeEEEEEECCCChhHhhhHHHHHHHHHhCC--CcEEEEEECcC--------cHHHHHHCCCCcccEEEEEE
Q 026997 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE--------HKSMCYSLNVHVLPFFRFYR 180 (229)
Q Consensus 117 ~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~--------~~~l~~~~~I~~~Pt~l~~~ 180 (229)
-+++++||.=-|+-|+.-. ....+++|.++|. ++.++..=+++ +.++.+-..-..-++|-+|.
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ 91 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFE 91 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceE
Confidence 4789999999999999999 7778999999987 57777776653 33443332222345556663
No 266
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.57 E-value=29 Score=29.25 Aligned_cols=22 Identities=14% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHHCCCCcccEEEEEECCC
Q 026997 162 KSMCYSLNVHVLPFFRFYRGAH 183 (229)
Q Consensus 162 ~~l~~~~~I~~~Pt~l~~~~g~ 183 (229)
..+++++++.++||+++-++|+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~ 185 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT 185 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc
Confidence 4578999999999999999864
No 267
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=34.86 E-value=22 Score=27.94 Aligned_cols=19 Identities=11% Similarity=0.273 Sum_probs=15.9
Q ss_pred CcHHHHHHCCCCcccEEEE
Q 026997 160 EHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 160 ~~~~l~~~~~I~~~Pt~l~ 178 (229)
++..++.+++|.++||+++
T Consensus 131 ~~~~~~~~~gi~gTPt~iI 149 (178)
T cd03019 131 KAEKLAKKYKITGVPAFVV 149 (178)
T ss_pred HHHHHHHHcCCCCCCeEEE
Confidence 3456788999999999987
No 268
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=32.57 E-value=25 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.0
Q ss_pred cHHHHHHCCCCcccEEEE
Q 026997 161 HKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 161 ~~~l~~~~~I~~~Pt~l~ 178 (229)
+...+.++||.++|||++
T Consensus 156 ~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHcCCCcCCeEEE
Confidence 445678899999999986
No 269
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=30.48 E-value=3.2e+02 Score=25.90 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCCeEEEEEECCCChhHhhhHH--HHHHHHHh--CCCcEEEEEECcC--cHHHHHHCCCCcccEEEEEECCCceEEEEEe
Q 026997 118 GDKLVVVDFFSPGCGGCKALHP--KICQLAEM--NPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYRGAHGRVCIEEV 191 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~~Ck~~~p--~l~~la~~--~~~v~f~~Vd~d~--~~~l~~~~~I~~~Pt~l~~~~g~g~~~~~~~ 191 (229)
.++.++|.|-+.-......|.. ........ ...++-++|+... ...++.-|-+..+|.++|+ +-.|..+...+
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffI-g~sGtpLevit 95 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFI-GFSGTPLEVIT 95 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeee-cCCCceeEEee
Confidence 4555666565655555555552 22222211 1235555666543 4567788999999999888 44599999999
Q ss_pred cccC
Q 026997 192 GLAE 195 (229)
Q Consensus 192 G~~~ 195 (229)
|+..
T Consensus 96 g~v~ 99 (506)
T KOG2507|consen 96 GFVT 99 (506)
T ss_pred cccc
Confidence 9886
No 270
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=2.2e+02 Score=23.54 Aligned_cols=30 Identities=30% Similarity=0.750 Sum_probs=18.9
Q ss_pred CCCeEEEEEE----CCCCh--hHhhhHHHHHHHHHhC
Q 026997 118 GDKLVVVDFF----SPGCG--GCKALHPKICQLAEMN 148 (229)
Q Consensus 118 ~~k~vlV~F~----a~WC~--~Ck~~~p~l~~la~~~ 148 (229)
.+++||++|| +|.|- .| .++..++++.+.+
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka~ 124 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKAG 124 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccc-cccccHHHHhhcC
Confidence 5668999998 45552 23 3456667776654
No 271
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=28.30 E-value=3.8e+02 Score=22.86 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHHccCCCeEEEEEECCC------ChhHhhhHHHHHHHHHhCC-CcEEEEEECcCcHHHHHH----CCCCcccE
Q 026997 111 VESLWHAGDKLVVVDFFSPG------CGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS----LNVHVLPF 175 (229)
Q Consensus 111 ~~~l~~~~~k~vlV~F~a~W------C~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~----~~I~~~Pt 175 (229)
.+.+.+ -+++|-|.+|.+- -..=+.+...+++++..-+ ++.+-.||.+.+++.+++ +||...+.
T Consensus 17 ~~~L~~-L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 17 KKVLKS-LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred HHHHHh-CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 344443 3456666666554 3333444445555555556 588889998777666555 88887554
No 272
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=27.91 E-value=1.5e+02 Score=26.18 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=26.7
Q ss_pred CCCeEEEEEECCCCh-hHhhhHHHHHHHHHhC---CCc----EEEEEEC
Q 026997 118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMN---PDV----QFLQVNY 158 (229)
Q Consensus 118 ~~k~vlV~F~a~WC~-~Ck~~~p~l~~la~~~---~~v----~f~~Vd~ 158 (229)
.+|-+|+||.=+.|+ .|=.....+.+..++. +++ .|+.+|-
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 688999999999996 4766555554443322 222 5777774
No 273
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=27.42 E-value=83 Score=23.50 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=23.2
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcC
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (229)
..|+.+-|..|+.....+++- ++.|-.+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 457899999999988887653 45555566543
No 274
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=27.08 E-value=80 Score=23.71 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=21.9
Q ss_pred EEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc
Q 026997 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (229)
Q Consensus 123 lV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d 159 (229)
+..|+.+.|..|+.....+++- ++.|-.+|+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehh
Confidence 3457899999999888766543 4445555554
No 275
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=27.05 E-value=1.8e+02 Score=19.46 Aligned_cols=51 Identities=8% Similarity=-0.029 Sum_probs=31.6
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc----CcHHHHHHCCCCcccEEE
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d----~~~~l~~~~~I~~~Pt~l 177 (229)
..|+.+.|+.|+..+-.+.+... ++.+..+|.. ..+++.+--.-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 35778889999887754443322 3556666653 234465555566789985
No 276
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=26.23 E-value=90 Score=23.17 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=21.6
Q ss_pred EEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECc
Q 026997 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (229)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d 159 (229)
..|+.+-|..|+.....+++- ++.|-.+|+-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 457899999999987766543 4445556654
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.94 E-value=1.2e+02 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.360 Sum_probs=33.1
Q ss_pred CChhHhhhHHHHHHHHHhCCCcEEEEEECcCcH-HHHHHCC--CCcccEEEEE
Q 026997 130 GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCYSLN--VHVLPFFRFY 179 (229)
Q Consensus 130 WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-~l~~~~~--I~~~Pt~l~~ 179 (229)
.|++|..++..+.-.-..-..+.+..|+..... .+.+..| =++.|++++=
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 399999998877654444445788889877533 3333333 3689998765
No 278
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=23.26 E-value=3.5e+02 Score=21.01 Aligned_cols=31 Identities=29% Similarity=0.579 Sum_probs=22.7
Q ss_pred EEEE--CCCChhHhhhHHHHHHHHHhCCCcEEEEEE
Q 026997 124 VDFF--SPGCGGCKALHPKICQLAEMNPDVQFLQVN 157 (229)
Q Consensus 124 V~F~--a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd 157 (229)
|+.| -+-|..|.. .++++.++||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 4444 455888875 788889999998776554
No 279
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=21.81 E-value=4.7e+02 Score=23.46 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCeEEEEEECCCChhHhhhHHHHHHHHHhCCCcEEEEEECcCc--HHHHHHCCCCcccEEEE
Q 026997 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH--KSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 119 ~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~--~~l~~~~~I~~~Pt~l~ 178 (229)
...+||++ .||.|++....++.+......+.++-||+... ...++++.-..+|.+-+
T Consensus 76 ~~~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v 134 (319)
T TIGR03439 76 SGSMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRC 134 (319)
T ss_pred CCCEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEE
Confidence 34478888 68899999999999986656689999999852 22334443345666555
No 280
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.85 E-value=1.1e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEEE
Q 026997 138 HPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (229)
Q Consensus 138 ~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l~ 178 (229)
...++++.+.-+++.+.-++.| ++++++++..||.++.
T Consensus 62 ~~~l~~Lr~lapgl~l~P~sgd---dLa~rL~l~hYPvLit 99 (105)
T TIGR03765 62 AAALQRLRALAPGLPLLPVSGD---DLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHHHcCCCcccCCCHH---HHHHHhCCCcccEEEe
Confidence 4567777777788888777654 7899999999998863
No 281
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.83 E-value=1.3e+02 Score=23.92 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCcEEEEEECcCcHHHHHHCCCCcccEEE
Q 026997 138 HPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (229)
Q Consensus 138 ~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~I~~~Pt~l 177 (229)
...++++.+.-+++.+.-++.| +|+++++++.||.++
T Consensus 100 ~~~L~~Lr~lapgl~l~P~sgd---dLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 100 EAALQRLRQLAPGLPLLPVSGD---DLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHHHHHcCCCeecCCCHH---HHHHHhCCCcccEEe
Confidence 4667777777788888877754 789999999999886
No 282
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=1.8e+02 Score=23.80 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.9
Q ss_pred ccCCCeEEEEEECCCChhHhhhHHHHHHHHHhCCC--cEEEEEECc
Q 026997 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (229)
Q Consensus 116 ~~~~k~vlV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (229)
.-+++++||-=-|+-|+.-..-...++.|.++|.+ +.++..-|.
T Consensus 31 ~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 31 QYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred HhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 34788888888899999999788899999988864 666665554
No 283
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=54 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=18.3
Q ss_pred CeEEEEEECCCChhHhhhHHHHHHH
Q 026997 120 KLVVVDFFSPGCGGCKALHPKICQL 144 (229)
Q Consensus 120 k~vlV~F~a~WC~~Ck~~~p~l~~l 144 (229)
....+-|..+.|++|+.....+...
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~ 143 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCA 143 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHh
Confidence 3455667899999999888665543
Done!