Query 026998
Match_columns 229
No_of_seqs 172 out of 1821
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.9E-26 4.1E-31 164.9 16.8 144 50-212 13-156 (160)
2 KOG0027 Calmodulin and related 99.9 5.9E-25 1.3E-29 160.1 16.9 146 53-212 4-149 (151)
3 PTZ00183 centrin; Provisional 99.9 3.7E-21 8.1E-26 141.2 16.9 143 53-213 13-155 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 3.6E-21 7.9E-26 134.7 15.2 142 53-212 29-170 (172)
5 PTZ00184 calmodulin; Provision 99.9 4.9E-21 1.1E-25 139.1 16.6 141 53-211 7-147 (149)
6 KOG0031 Myosin regulatory ligh 99.9 3.1E-20 6.7E-25 129.2 16.9 137 54-212 29-165 (171)
7 KOG0030 Myosin essential light 99.9 3.3E-20 7.1E-25 126.9 14.5 143 52-211 6-150 (152)
8 KOG0037 Ca2+-binding protein, 99.8 1.3E-18 2.8E-23 128.5 15.0 133 57-214 57-190 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.7 6.3E-17 1.4E-21 119.9 13.5 139 53-213 29-176 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.7 2.6E-16 5.5E-21 116.7 15.8 137 57-212 26-175 (193)
11 KOG0036 Predicted mitochondria 99.7 2E-16 4.4E-21 126.6 14.8 140 50-213 7-147 (463)
12 KOG0037 Ca2+-binding protein, 99.7 8.7E-16 1.9E-20 113.6 14.0 139 3-173 72-217 (221)
13 KOG4223 Reticulocalbin, calume 99.6 1.1E-15 2.4E-20 119.3 9.0 188 23-224 113-317 (325)
14 COG5126 FRQ1 Ca2+-binding prot 99.5 1.6E-13 3.5E-18 98.5 11.5 119 2-121 34-156 (160)
15 KOG0044 Ca2+ sensor (EF-Hand s 99.5 5.3E-13 1.1E-17 99.2 14.6 146 23-176 29-175 (193)
16 cd05022 S-100A13 S-100A13: S-1 99.5 1.7E-13 3.7E-18 89.8 8.2 68 147-214 7-77 (89)
17 KOG0027 Calmodulin and related 99.4 8E-13 1.7E-17 96.2 9.8 119 3-121 23-149 (151)
18 KOG4223 Reticulocalbin, calume 99.4 1.3E-12 2.8E-17 102.3 10.8 158 53-215 73-231 (325)
19 PLN02964 phosphatidylserine de 99.4 2.4E-12 5.2E-17 111.7 13.5 115 53-190 139-271 (644)
20 PF13499 EF-hand_7: EF-hand do 99.4 9.4E-13 2E-17 82.0 7.6 62 149-210 1-66 (66)
21 PTZ00183 centrin; Provisional 99.4 2.2E-11 4.7E-16 89.2 14.5 125 32-176 29-154 (158)
22 cd05027 S-100B S-100B: S-100B 99.4 4.5E-12 9.7E-17 83.1 9.0 67 148-214 8-81 (88)
23 KOG0377 Protein serine/threoni 99.3 3.1E-11 6.7E-16 98.0 12.8 149 55-212 462-615 (631)
24 PTZ00184 calmodulin; Provision 99.3 1.2E-10 2.6E-15 84.2 14.1 129 27-175 18-147 (149)
25 cd05029 S-100A6 S-100A6: S-100 99.3 2.9E-11 6.2E-16 79.3 9.1 68 147-214 9-81 (88)
26 cd05026 S-100Z S-100Z: S-100Z 99.3 3.9E-11 8.5E-16 79.7 8.9 70 146-215 8-84 (93)
27 cd05031 S-100A10_like S-100A10 99.3 3.2E-11 6.9E-16 80.5 8.5 68 146-213 6-80 (94)
28 cd05022 S-100A13 S-100A13: S-1 99.3 2.4E-11 5.1E-16 79.6 7.5 69 55-123 6-77 (89)
29 cd05025 S-100A1 S-100A1: S-100 99.3 4.6E-11 9.9E-16 79.4 8.9 69 146-214 7-82 (92)
30 PF13499 EF-hand_7: EF-hand do 99.2 6.1E-11 1.3E-15 73.8 7.6 62 58-119 1-66 (66)
31 KOG0028 Ca2+-binding protein ( 99.2 1.9E-10 4.2E-15 81.2 10.8 99 23-121 72-170 (172)
32 KOG0034 Ca2+/calmodulin-depend 99.2 2.2E-10 4.8E-15 85.2 11.6 119 3-121 49-175 (187)
33 KOG2643 Ca2+ binding protein, 99.2 1.8E-10 3.8E-15 93.6 11.4 156 31-215 297-456 (489)
34 PF13833 EF-hand_8: EF-hand do 99.2 8.2E-11 1.8E-15 70.1 6.9 52 161-212 1-53 (54)
35 cd05027 S-100B S-100B: S-100B 99.2 2.3E-10 4.9E-15 75.1 8.8 68 55-122 6-80 (88)
36 KOG0031 Myosin regulatory ligh 99.2 5.9E-10 1.3E-14 78.2 10.8 118 3-120 47-164 (171)
37 cd05023 S-100A11 S-100A11: S-1 99.2 3.8E-10 8.3E-15 74.1 9.1 69 146-214 7-82 (89)
38 cd00213 S-100 S-100: S-100 dom 99.1 2.8E-10 6E-15 75.0 7.9 69 146-214 6-81 (88)
39 cd00052 EH Eps15 homology doma 99.1 2.1E-10 4.5E-15 71.5 6.9 61 151-213 2-62 (67)
40 smart00027 EH Eps15 homology d 99.1 5.7E-10 1.2E-14 74.7 8.9 64 148-213 10-73 (96)
41 KOG0038 Ca2+-binding kinase in 99.1 6.6E-10 1.4E-14 77.2 8.7 100 96-213 74-178 (189)
42 cd05029 S-100A6 S-100A6: S-100 99.0 1.8E-09 3.9E-14 70.8 8.2 69 55-123 8-81 (88)
43 smart00027 EH Eps15 homology d 99.0 2.5E-09 5.5E-14 71.6 9.0 71 53-125 6-76 (96)
44 cd05026 S-100Z S-100Z: S-100Z 99.0 2.6E-09 5.7E-14 70.9 8.7 69 55-123 8-83 (93)
45 cd05031 S-100A10_like S-100A10 99.0 2.4E-09 5.2E-14 71.4 8.4 68 55-122 6-80 (94)
46 cd05025 S-100A1 S-100A1: S-100 99.0 2.7E-09 5.8E-14 70.9 8.6 69 55-123 7-82 (92)
47 cd00051 EFh EF-hand, calcium b 99.0 1.7E-09 3.7E-14 65.7 7.0 61 150-210 2-62 (63)
48 PF14658 EF-hand_9: EF-hand do 99.0 2.2E-09 4.7E-14 65.1 7.0 62 153-214 3-66 (66)
49 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.3E-09 5.1E-14 73.7 7.7 64 146-213 46-109 (116)
50 KOG0030 Myosin essential light 99.0 5.1E-09 1.1E-13 72.3 9.1 103 17-120 41-150 (152)
51 cd00052 EH Eps15 homology doma 99.0 3.1E-09 6.7E-14 66.1 7.5 62 60-123 2-63 (67)
52 cd05030 calgranulins Calgranul 99.0 4.7E-09 1E-13 69.0 7.7 69 147-215 7-82 (88)
53 cd00213 S-100 S-100: S-100 dom 99.0 5.3E-09 1.2E-13 68.9 8.0 69 54-122 5-80 (88)
54 PLN02964 phosphatidylserine de 98.9 8.9E-09 1.9E-13 89.8 11.2 124 71-213 118-244 (644)
55 KOG0040 Ca2+-binding actin-bun 98.9 2.7E-08 5.8E-13 91.2 12.7 133 53-210 2249-2396(2399)
56 KOG0036 Predicted mitochondria 98.9 1.7E-08 3.6E-13 81.8 10.3 108 8-122 40-147 (463)
57 PF13833 EF-hand_8: EF-hand do 98.9 8E-09 1.7E-13 61.4 6.4 52 70-121 1-53 (54)
58 cd05023 S-100A11 S-100A11: S-1 98.9 1.9E-08 4.2E-13 66.0 8.5 68 55-122 7-81 (89)
59 KOG2643 Ca2+ binding protein, 98.9 6.9E-09 1.5E-13 84.5 7.7 159 37-219 213-391 (489)
60 cd00051 EFh EF-hand, calcium b 98.8 2.2E-08 4.8E-13 60.7 7.7 61 59-119 2-62 (63)
61 PF14658 EF-hand_9: EF-hand do 98.8 1.7E-08 3.7E-13 61.2 6.5 62 61-122 2-65 (66)
62 KOG0041 Predicted Ca2+-binding 98.8 4.8E-08 1E-12 71.7 8.4 67 148-214 99-165 (244)
63 KOG2562 Protein phosphatase 2 98.8 7.3E-08 1.6E-12 79.2 10.2 125 62-208 283-420 (493)
64 cd00252 SPARC_EC SPARC_EC; ext 98.7 6.3E-08 1.4E-12 66.6 7.7 63 54-120 45-107 (116)
65 cd05030 calgranulins Calgranul 98.6 2.6E-07 5.6E-12 60.7 8.1 69 55-123 6-81 (88)
66 cd05024 S-100A10 S-100A10: A s 98.6 5.8E-07 1.3E-11 58.5 8.8 66 148-214 8-78 (91)
67 PF00036 EF-hand_1: EF hand; 98.6 1.1E-07 2.4E-12 48.4 4.0 27 150-176 2-28 (29)
68 KOG0751 Mitochondrial aspartat 98.6 1.5E-06 3.3E-11 72.2 12.1 146 34-208 88-240 (694)
69 KOG4251 Calcium binding protei 98.5 2.5E-06 5.5E-11 64.8 10.4 155 56-210 100-307 (362)
70 KOG0041 Predicted Ca2+-binding 98.5 1.2E-06 2.5E-11 64.6 8.2 70 54-123 96-165 (244)
71 PF00036 EF-hand_1: EF hand; 98.4 3.6E-07 7.8E-12 46.6 3.5 28 185-212 1-28 (29)
72 cd05024 S-100A10 S-100A10: A s 98.4 3.9E-06 8.5E-11 54.7 8.7 68 55-123 6-78 (91)
73 KOG2562 Protein phosphatase 2 98.4 1E-05 2.2E-10 66.9 12.8 177 25-213 144-344 (493)
74 PF13405 EF-hand_6: EF-hand do 98.4 7.1E-07 1.5E-11 46.4 4.0 30 149-178 1-31 (31)
75 KOG4666 Predicted phosphate ac 98.3 7.3E-07 1.6E-11 70.3 5.0 157 34-213 203-360 (412)
76 KOG0751 Mitochondrial aspartat 98.3 1.5E-05 3.2E-10 66.5 11.6 136 55-214 31-177 (694)
77 KOG0038 Ca2+-binding kinase in 98.3 5.5E-06 1.2E-10 57.9 7.6 109 13-121 64-177 (189)
78 PF12763 EF-hand_4: Cytoskelet 98.2 1.5E-05 3.3E-10 53.7 8.1 62 148-212 10-71 (104)
79 PF13405 EF-hand_6: EF-hand do 98.2 3.6E-06 7.8E-11 43.7 3.8 30 58-87 1-31 (31)
80 PRK12309 transaldolase/EF-hand 98.2 5.8E-06 1.3E-10 68.7 6.7 59 144-215 330-388 (391)
81 PF12763 EF-hand_4: Cytoskelet 98.1 2E-05 4.3E-10 53.2 7.8 69 53-124 6-74 (104)
82 PF13202 EF-hand_5: EF hand; P 98.1 5.1E-06 1.1E-10 40.7 3.5 24 151-174 2-25 (25)
83 KOG0169 Phosphoinositide-speci 98.1 5.6E-05 1.2E-09 66.3 11.7 138 54-214 133-276 (746)
84 PF14788 EF-hand_10: EF hand; 98.1 2.3E-05 4.9E-10 45.0 5.9 50 164-213 1-50 (51)
85 PF14788 EF-hand_10: EF hand; 98.0 2.5E-05 5.4E-10 44.8 5.6 49 73-121 1-49 (51)
86 KOG0377 Protein serine/threoni 98.0 2.8E-05 6.2E-10 64.0 7.6 67 56-122 546-616 (631)
87 KOG1707 Predicted Ras related/ 97.9 0.00015 3.3E-09 62.1 10.9 155 54-212 192-377 (625)
88 PRK12309 transaldolase/EF-hand 97.9 9.7E-05 2.1E-09 61.6 9.3 88 23-123 299-387 (391)
89 PF10591 SPARC_Ca_bdg: Secrete 97.9 1E-05 2.2E-10 55.5 2.6 61 147-209 53-113 (113)
90 PF13202 EF-hand_5: EF hand; P 97.9 2.6E-05 5.6E-10 38.2 3.2 25 59-83 1-25 (25)
91 KOG1029 Endocytic adaptor prot 97.8 0.00067 1.4E-08 59.8 12.3 192 13-211 6-256 (1118)
92 KOG0040 Ca2+-binding actin-bun 97.7 0.00017 3.8E-09 67.4 7.7 68 146-213 2251-2325(2399)
93 PF09279 EF-hand_like: Phospho 97.5 0.00023 5.1E-09 46.0 5.3 64 150-214 2-71 (83)
94 KOG4065 Uncharacterized conser 97.3 0.00078 1.7E-08 45.3 5.8 59 151-209 70-142 (144)
95 PF10591 SPARC_Ca_bdg: Secrete 97.3 8.9E-05 1.9E-09 50.9 1.4 63 53-117 50-112 (113)
96 KOG0046 Ca2+-binding actin-bun 97.3 0.0013 2.8E-08 55.7 7.7 71 53-124 15-88 (627)
97 KOG4666 Predicted phosphate ac 97.3 0.00036 7.9E-09 55.5 4.3 101 57-177 259-360 (412)
98 KOG0046 Ca2+-binding actin-bun 97.2 0.0018 3.8E-08 54.9 8.1 65 148-213 19-86 (627)
99 KOG4251 Calcium binding protei 97.1 0.00056 1.2E-08 52.3 3.6 67 147-213 100-169 (362)
100 smart00054 EFh EF-hand, calciu 96.9 0.0019 4.2E-08 31.7 3.6 27 150-176 2-28 (29)
101 smart00054 EFh EF-hand, calciu 96.7 0.0025 5.3E-08 31.3 3.1 27 59-85 2-28 (29)
102 PF05042 Caleosin: Caleosin re 96.6 0.031 6.8E-07 40.8 9.3 104 59-175 9-165 (174)
103 KOG3555 Ca2+-binding proteogly 96.5 0.0054 1.2E-07 49.4 5.2 66 143-212 245-310 (434)
104 KOG4065 Uncharacterized conser 96.3 0.017 3.6E-07 39.1 5.9 59 60-118 70-142 (144)
105 PF09279 EF-hand_like: Phospho 96.1 0.017 3.6E-07 37.2 5.1 63 58-121 1-69 (83)
106 PF05517 p25-alpha: p25-alpha 96.1 0.064 1.4E-06 39.0 8.4 64 151-214 5-71 (154)
107 KOG0998 Synaptic vesicle prote 96.0 0.0098 2.1E-07 54.8 4.6 156 53-213 125-346 (847)
108 PF08726 EFhand_Ca_insen: Ca2+ 95.8 0.015 3.3E-07 35.9 3.4 54 148-209 6-66 (69)
109 KOG1265 Phospholipase C [Lipid 95.2 0.91 2E-05 41.6 13.6 120 68-212 159-299 (1189)
110 PLN02952 phosphoinositide phos 95.1 0.18 3.9E-06 44.6 9.2 89 106-212 13-110 (599)
111 KOG1955 Ral-GTPase effector RA 94.9 0.06 1.3E-06 45.7 5.2 77 51-129 225-301 (737)
112 KOG0042 Glycerol-3-phosphate d 94.7 0.085 1.8E-06 45.6 5.9 69 147-215 592-660 (680)
113 KOG0035 Ca2+-binding actin-bun 94.7 0.34 7.4E-06 44.5 9.9 136 54-211 744-885 (890)
114 KOG1955 Ral-GTPase effector RA 94.5 0.1 2.2E-06 44.3 5.7 63 148-212 231-293 (737)
115 PF05042 Caleosin: Caleosin re 94.3 0.21 4.5E-06 36.6 6.3 68 148-215 7-127 (174)
116 KOG2243 Ca2+ release channel ( 94.2 0.42 9E-06 45.8 9.3 60 152-212 4061-4120(5019)
117 KOG1029 Endocytic adaptor prot 94.0 0.15 3.2E-06 45.7 6.0 72 51-124 189-260 (1118)
118 KOG3555 Ca2+-binding proteogly 93.4 0.19 4.1E-06 40.8 5.1 98 58-178 212-312 (434)
119 KOG4578 Uncharacterized conser 93.2 0.072 1.6E-06 42.8 2.5 104 105-212 292-398 (421)
120 PF09069 EF-hand_3: EF-hand; 93.0 1 2.3E-05 29.4 7.3 62 148-212 3-75 (90)
121 KOG0169 Phosphoinositide-speci 92.4 1.6 3.4E-05 39.4 9.9 97 95-214 138-234 (746)
122 PF05517 p25-alpha: p25-alpha 92.0 1.2 2.5E-05 32.4 7.4 64 60-123 2-71 (154)
123 KOG4347 GTPase-activating prot 91.5 0.43 9.4E-06 42.0 5.4 59 146-205 553-611 (671)
124 KOG4347 GTPase-activating prot 90.8 0.53 1.1E-05 41.5 5.2 73 42-115 540-612 (671)
125 KOG4578 Uncharacterized conser 89.8 0.27 5.8E-06 39.7 2.4 67 55-121 331-398 (421)
126 KOG4286 Dystrophin-like protei 89.3 13 0.00028 33.9 12.4 173 17-211 376-579 (966)
127 KOG2243 Ca2+ release channel ( 89.2 0.75 1.6E-05 44.2 5.1 60 61-121 4061-4120(5019)
128 KOG0042 Glycerol-3-phosphate d 89.2 0.97 2.1E-05 39.4 5.4 72 52-123 588-659 (680)
129 PF12174 RST: RCD1-SRO-TAF4 (R 88.8 0.65 1.4E-05 28.8 3.2 49 164-215 8-56 (70)
130 KOG0035 Ca2+-binding actin-bun 88.8 1.5 3.3E-05 40.4 6.7 69 144-212 743-816 (890)
131 KOG3866 DNA-binding protein of 88.8 1.2 2.6E-05 35.8 5.4 24 188-211 300-323 (442)
132 PF08976 DUF1880: Domain of un 88.4 0.48 1E-05 32.2 2.6 32 181-212 4-35 (118)
133 KOG3866 DNA-binding protein of 86.5 0.73 1.6E-05 37.0 3.0 63 60-122 247-325 (442)
134 PLN02952 phosphoinositide phos 86.4 6.3 0.00014 35.2 8.9 53 70-123 13-67 (599)
135 PF08414 NADPH_Ox: Respiratory 86.2 4.4 9.6E-05 26.9 6.0 63 147-214 29-94 (100)
136 KOG0998 Synaptic vesicle prote 85.7 1.8 3.9E-05 40.3 5.5 154 55-213 9-191 (847)
137 PLN02222 phosphoinositide phos 85.2 2.7 5.9E-05 37.3 6.1 64 148-213 25-91 (581)
138 KOG2871 Uncharacterized conser 83.3 1.5 3.2E-05 36.2 3.4 64 147-210 308-372 (449)
139 PLN02228 Phosphoinositide phos 82.9 4.9 0.00011 35.6 6.7 65 148-214 24-94 (567)
140 PF07308 DUF1456: Protein of u 82.0 6.8 0.00015 24.1 5.3 49 165-213 14-62 (68)
141 PF11116 DUF2624: Protein of u 81.8 8.9 0.00019 24.7 5.9 52 163-214 13-64 (85)
142 KOG3449 60S acidic ribosomal p 80.8 9.1 0.0002 25.8 5.9 54 151-209 4-57 (112)
143 PLN02230 phosphoinositide phos 80.7 6.4 0.00014 35.2 6.6 64 148-212 29-102 (598)
144 PF14513 DAG_kinase_N: Diacylg 79.0 2.1 4.6E-05 30.4 2.7 55 161-217 4-65 (138)
145 PF07879 PHB_acc_N: PHB/PHA ac 78.1 5.2 0.00011 24.2 3.7 39 155-193 10-58 (64)
146 TIGR01848 PHA_reg_PhaR polyhyd 77.8 9.4 0.0002 25.7 5.2 58 155-213 10-77 (107)
147 PF08976 DUF1880: Domain of un 75.9 2.6 5.7E-05 28.8 2.3 32 90-121 4-35 (118)
148 KOG1707 Predicted Ras related/ 75.4 4.6 0.0001 35.6 4.2 65 55-125 313-381 (625)
149 PF14513 DAG_kinase_N: Diacylg 74.6 23 0.00051 25.2 6.9 34 162-195 46-80 (138)
150 KOG0033 Ca2+/calmodulin-depend 73.1 2.7 5.9E-05 33.1 2.1 31 4-34 258-294 (355)
151 PF12174 RST: RCD1-SRO-TAF4 (R 71.9 14 0.0003 22.9 4.6 62 106-192 5-66 (70)
152 PF04558 tRNA_synt_1c_R1: Glut 70.0 29 0.00063 25.5 6.8 46 147-193 84-129 (164)
153 PTZ00373 60S Acidic ribosomal 69.5 16 0.00034 25.0 4.9 52 152-208 7-58 (112)
154 KOG3449 60S acidic ribosomal p 67.8 35 0.00076 23.1 6.5 54 60-118 4-57 (112)
155 cd05833 Ribosomal_P2 Ribosomal 67.3 37 0.00079 23.1 6.6 56 153-213 6-61 (109)
156 PF09069 EF-hand_3: EF-hand; 67.2 32 0.0007 22.5 8.1 62 57-121 3-75 (90)
157 PLN02223 phosphoinositide phos 66.2 18 0.0004 31.8 5.8 64 148-212 16-92 (537)
158 cd07313 terB_like_2 tellurium 65.1 37 0.0008 22.4 6.2 51 71-121 13-65 (104)
159 KOG2871 Uncharacterized conser 63.7 6.7 0.00015 32.5 2.6 68 53-120 305-373 (449)
160 PF09068 EF-hand_2: EF hand; 63.1 49 0.0011 23.1 10.1 29 148-176 97-125 (127)
161 cd07313 terB_like_2 tellurium 63.0 11 0.00023 25.0 3.2 51 162-212 13-65 (104)
162 PLN03225 Serine/threonine-prot 62.4 14 0.00029 33.1 4.5 105 4-119 441-546 (566)
163 KOG0506 Glutaminase (contains 59.3 67 0.0015 27.9 7.7 100 60-164 89-197 (622)
164 PLN02222 phosphoinositide phos 58.4 49 0.0011 29.7 7.1 65 55-121 23-90 (581)
165 PF01023 S_100: S-100/ICaBP ty 58.1 31 0.00066 19.1 4.5 30 148-177 6-37 (44)
166 PF12631 GTPase_Cys_C: Catalyt 57.8 26 0.00057 21.7 4.1 47 148-194 23-73 (73)
167 PF08726 EFhand_Ca_insen: Ca2+ 56.6 17 0.00037 22.5 2.9 55 56-118 5-66 (69)
168 PF07308 DUF1456: Protein of u 55.3 47 0.001 20.4 5.8 49 74-122 14-62 (68)
169 PLN02228 Phosphoinositide phos 54.9 82 0.0018 28.3 7.9 66 54-121 21-92 (567)
170 KOG4301 Beta-dystrobrevin [Cyt 54.8 35 0.00076 28.1 5.2 65 153-218 115-179 (434)
171 KOG0039 Ferric reductase, NADH 54.1 28 0.00061 31.7 5.1 65 147-212 17-89 (646)
172 KOG3077 Uncharacterized conser 53.0 1.2E+02 0.0025 24.2 11.9 147 55-204 62-212 (260)
173 PHA02335 hypothetical protein 52.9 68 0.0015 21.6 5.5 86 107-223 22-109 (118)
174 KOG1264 Phospholipase C [Lipid 52.9 96 0.0021 29.1 8.0 140 56-212 143-293 (1267)
175 PF00404 Dockerin_1: Dockerin 52.8 21 0.00046 16.4 2.2 13 195-207 2-14 (21)
176 PLN02230 phosphoinositide phos 52.7 87 0.0019 28.3 7.8 67 54-121 26-102 (598)
177 PLN00138 large subunit ribosom 52.3 46 0.001 22.8 4.8 50 154-208 7-56 (113)
178 KOG4286 Dystrophin-like protei 52.0 77 0.0017 29.3 7.2 108 59-175 472-579 (966)
179 PF11116 DUF2624: Protein of u 51.8 63 0.0014 20.9 8.5 51 72-122 13-63 (85)
180 KOG4070 Putative signal transd 51.6 20 0.00044 25.8 3.0 50 165-214 34-87 (180)
181 TIGR02675 tape_meas_nterm tape 51.4 19 0.0004 22.6 2.6 16 161-176 27-42 (75)
182 cd04411 Ribosomal_P1_P2_L12p R 50.8 59 0.0013 21.9 5.1 43 165-212 17-59 (105)
183 KOG0032 Ca2+/calmodulin-depend 50.1 9.7 0.00021 32.2 1.5 16 4-19 284-299 (382)
184 PF08414 NADPH_Ox: Respiratory 49.2 77 0.0017 21.1 5.8 60 58-122 31-93 (100)
185 PRK06402 rpl12p 50S ribosomal 48.6 66 0.0014 21.8 5.0 43 164-211 16-58 (106)
186 KOG4004 Matricellular protein 47.1 8.6 0.00019 29.0 0.7 57 153-211 192-249 (259)
187 PRK09430 djlA Dna-J like membr 46.5 1.5E+02 0.0033 23.7 10.1 101 70-192 68-174 (267)
188 PLN02508 magnesium-protoporphy 46.4 76 0.0016 26.2 5.9 138 54-217 38-186 (357)
189 PF03979 Sigma70_r1_1: Sigma-7 45.7 22 0.00048 22.6 2.4 46 148-197 7-52 (82)
190 PF13608 Potyvirid-P3: Protein 44.0 39 0.00084 29.3 4.2 31 56-87 288-318 (445)
191 COG4103 Uncharacterized protei 43.8 37 0.00081 24.2 3.4 59 152-212 34-94 (148)
192 COG5394 Uncharacterized protei 43.5 1.1E+02 0.0024 22.4 5.7 60 155-215 19-89 (193)
193 PTZ00373 60S Acidic ribosomal 43.3 94 0.002 21.3 5.2 52 61-117 7-58 (112)
194 PF06648 DUF1160: Protein of u 42.5 55 0.0012 22.8 4.0 47 147-196 36-83 (122)
195 PF02761 Cbl_N2: CBL proto-onc 42.0 95 0.0021 20.1 5.5 53 71-123 20-72 (85)
196 PF15412 Nse4-Nse3_bdg: Bindin 40.8 37 0.00081 19.9 2.6 22 198-219 23-44 (56)
197 cd07316 terB_like_DjlA N-termi 40.8 97 0.0021 20.3 5.1 12 162-173 13-24 (106)
198 PF03672 UPF0154: Uncharacteri 40.7 66 0.0014 19.5 3.7 32 71-102 29-60 (64)
199 KOG4004 Matricellular protein 40.5 8.1 0.00018 29.1 -0.3 29 146-174 220-248 (259)
200 PF12419 DUF3670: SNF2 Helicas 40.0 42 0.00092 23.9 3.3 50 160-209 79-138 (141)
201 KOG2301 Voltage-gated Ca2+ cha 39.5 27 0.00058 35.2 2.8 71 51-122 1411-1485(1592)
202 KOG1785 Tyrosine kinase negati 38.4 2.2E+02 0.0048 24.3 7.5 85 71-177 188-275 (563)
203 PF09068 EF-hand_2: EF hand; 38.1 1.4E+02 0.003 20.9 6.9 27 59-85 99-125 (127)
204 CHL00185 ycf59 magnesium-proto 38.0 98 0.0021 25.5 5.3 137 55-217 39-186 (351)
205 PF09336 Vps4_C: Vps4 C termin 37.8 52 0.0011 19.7 3.0 27 164-190 29-55 (62)
206 PF01885 PTS_2-RNA: RNA 2'-pho 37.4 73 0.0016 23.9 4.4 37 158-194 26-62 (186)
207 PRK13654 magnesium-protoporphy 37.4 1E+02 0.0022 25.5 5.3 134 55-217 43-190 (355)
208 KOG4403 Cell surface glycoprot 36.9 55 0.0012 28.0 3.9 88 105-212 40-129 (575)
209 PF07499 RuvA_C: RuvA, C-termi 36.8 70 0.0015 17.8 3.3 39 168-210 4-42 (47)
210 PF09373 PMBR: Pseudomurein-bi 36.4 44 0.00096 17.1 2.2 16 198-213 2-17 (33)
211 cd05833 Ribosomal_P2 Ribosomal 35.9 1.4E+02 0.003 20.3 5.2 56 61-121 5-60 (109)
212 PF04157 EAP30: EAP30/Vps36 fa 35.9 2E+02 0.0044 22.1 12.4 40 160-199 109-151 (223)
213 PRK00523 hypothetical protein; 35.8 87 0.0019 19.5 3.7 31 72-102 38-68 (72)
214 TIGR03573 WbuX N-acetyl sugar 35.3 73 0.0016 26.4 4.5 14 163-176 301-314 (343)
215 COG3763 Uncharacterized protei 35.2 86 0.0019 19.4 3.5 31 72-102 37-67 (71)
216 PF05099 TerB: Tellurite resis 34.6 17 0.00037 25.5 0.6 13 162-174 37-49 (140)
217 TIGR00624 tag DNA-3-methyladen 34.5 2E+02 0.0043 21.6 6.3 114 55-179 51-168 (179)
218 TIGR01639 P_fal_TIGR01639 Plas 34.5 88 0.0019 18.6 3.6 29 73-101 9-37 (61)
219 TIGR03685 L21P_arch 50S riboso 33.5 1.5E+02 0.0033 20.0 5.0 44 164-212 16-59 (105)
220 PRK09430 djlA Dna-J like membr 33.4 88 0.0019 25.0 4.5 50 161-214 68-122 (267)
221 PF04876 Tenui_NCP: Tenuivirus 33.2 1.9E+02 0.0041 20.9 7.2 77 91-194 81-162 (175)
222 PF02337 Gag_p10: Retroviral G 33.1 95 0.0021 20.3 3.8 44 168-211 12-60 (90)
223 KOG2301 Voltage-gated Ca2+ cha 32.9 41 0.00088 34.0 2.9 67 146-213 1415-1485(1592)
224 COG2058 RPP1A Ribosomal protei 32.7 1.4E+02 0.0031 20.2 4.6 52 155-212 8-59 (109)
225 cd01047 ACSF Aerobic Cyclase S 32.0 1.5E+02 0.0033 24.2 5.4 133 56-217 24-170 (323)
226 COG1460 Uncharacterized protei 32.0 87 0.0019 21.5 3.6 30 165-194 80-109 (114)
227 PF02885 Glycos_trans_3N: Glyc 31.8 85 0.0018 18.9 3.3 11 165-175 15-25 (66)
228 PRK00819 RNA 2'-phosphotransfe 31.6 1.2E+02 0.0025 22.7 4.6 37 158-194 27-63 (179)
229 COG2036 HHT1 Histones H3 and H 31.4 1.5E+02 0.0033 19.4 6.3 31 149-179 56-86 (91)
230 PLN02223 phosphoinositide phos 31.1 2.5E+02 0.0055 25.0 7.1 68 53-121 12-92 (537)
231 KOG0506 Glutaminase (contains 30.9 1.3E+02 0.0029 26.2 5.2 60 153-212 91-158 (622)
232 KOG4629 Predicted mechanosensi 30.8 1.6E+02 0.0034 27.3 6.0 62 147-215 403-464 (714)
233 PF08461 HTH_12: Ribonuclease 30.6 62 0.0014 19.6 2.6 37 161-197 10-46 (66)
234 cd00171 Sec7 Sec7 domain; Doma 29.8 2.4E+02 0.0052 21.1 9.7 39 156-194 141-181 (185)
235 cd05831 Ribosomal_P1 Ribosomal 29.6 1.1E+02 0.0025 20.5 3.9 45 161-210 14-58 (103)
236 COG4807 Uncharacterized protei 28.4 2.1E+02 0.0046 20.2 5.0 38 148-194 91-128 (155)
237 PLN02859 glutamine-tRNA ligase 28.1 3.7E+02 0.008 25.4 7.9 45 148-193 87-131 (788)
238 KOG1265 Phospholipase C [Lipid 28.1 5.5E+02 0.012 24.7 11.2 95 70-176 196-299 (1189)
239 COG2818 Tag 3-methyladenine DN 27.8 64 0.0014 24.2 2.6 45 146-190 53-97 (188)
240 KOG2760 Vacuolar sorting prote 27.5 3.8E+02 0.0082 22.9 7.2 17 161-177 323-339 (432)
241 PRK01844 hypothetical protein; 27.1 1.4E+02 0.003 18.6 3.6 30 73-102 38-67 (72)
242 cd05832 Ribosomal_L12p Ribosom 26.8 2.1E+02 0.0045 19.4 5.3 43 164-211 16-58 (106)
243 KOG4403 Cell surface glycoprot 26.4 3.5E+02 0.0077 23.4 6.9 63 56-122 67-130 (575)
244 PF06384 ICAT: Beta-catenin-in 26.3 1E+02 0.0022 19.6 2.9 24 169-192 21-44 (78)
245 PF11848 DUF3368: Domain of un 26.3 1.2E+02 0.0026 16.9 3.1 32 162-193 15-47 (48)
246 PF11020 DUF2610: Domain of un 26.3 1.1E+02 0.0024 19.4 3.1 43 172-214 36-79 (82)
247 TIGR02029 AcsF magnesium-proto 26.0 1.6E+02 0.0034 24.3 4.6 137 55-217 33-180 (337)
248 PRK14981 DNA-directed RNA poly 25.8 1.1E+02 0.0025 20.8 3.4 24 168-191 82-105 (112)
249 smart00513 SAP Putative DNA-bi 25.8 89 0.0019 16.0 2.3 18 164-181 3-20 (35)
250 PLN00138 large subunit ribosom 25.7 2.3E+02 0.0049 19.4 5.1 51 62-117 6-56 (113)
251 KOG0039 Ferric reductase, NADH 25.3 2.6E+02 0.0056 25.7 6.5 87 74-177 4-90 (646)
252 PHA02105 hypothetical protein 24.0 1.7E+02 0.0036 17.3 3.7 48 164-211 4-56 (68)
253 PF08355 EF_assoc_1: EF hand a 23.9 61 0.0013 20.4 1.7 20 193-212 11-30 (76)
254 TIGR00135 gatC glutamyl-tRNA(G 23.9 1.1E+02 0.0025 19.7 3.1 29 165-193 1-29 (93)
255 PF07862 Nif11: Nitrogen fixat 23.8 1.1E+02 0.0024 17.0 2.7 21 166-186 28-48 (49)
256 PF14069 SpoVIF: Stage VI spor 23.8 2E+02 0.0044 18.3 4.6 43 167-210 30-76 (79)
257 PF09107 SelB-wing_3: Elongati 23.7 1.3E+02 0.0028 17.2 2.8 29 162-195 8-36 (50)
258 KOG3341 RNA polymerase II tran 23.6 2.9E+02 0.0063 21.4 5.4 49 61-109 104-156 (249)
259 PF02761 Cbl_N2: CBL proto-onc 23.2 2.2E+02 0.0048 18.4 5.8 49 163-211 21-69 (85)
260 PF13623 SurA_N_2: SurA N-term 22.8 1.5E+02 0.0033 21.2 3.7 36 174-209 99-144 (145)
261 KOG1954 Endocytosis/signaling 22.2 1.8E+02 0.004 24.8 4.5 60 58-120 445-504 (532)
262 TIGR03798 ocin_TIGR03798 bacte 22.1 1.9E+02 0.0041 17.2 3.8 25 165-189 25-49 (64)
263 KOG1954 Endocytosis/signaling 22.0 1.4E+02 0.0029 25.5 3.7 58 149-209 445-502 (532)
264 PRK00034 gatC aspartyl/glutamy 21.8 1.4E+02 0.003 19.4 3.2 31 164-194 2-32 (95)
265 PF01316 Arg_repressor: Argini 21.5 2.1E+02 0.0046 17.6 3.7 32 163-194 18-49 (70)
266 PF07492 Trehalase_Ca-bi: Neut 21.1 38 0.00083 17.0 0.3 16 189-204 4-19 (30)
267 COG5069 SAC6 Ca2+-binding acti 20.9 2.9E+02 0.0062 24.4 5.4 65 57-122 485-549 (612)
268 PF07553 Lipoprotein_Ltp: Host 20.8 1.8E+02 0.0039 16.5 3.4 31 162-192 16-47 (48)
269 smart00874 B5 tRNA synthetase 20.8 2E+02 0.0044 17.2 3.7 17 178-194 16-32 (71)
270 PF09312 SurA_N: SurA N-termin 20.7 2.1E+02 0.0046 19.4 4.1 42 165-212 67-110 (118)
271 cd00076 H4 Histone H4, one of 20.7 2.5E+02 0.0054 18.1 8.1 33 149-181 50-82 (85)
272 PF07128 DUF1380: Protein of u 20.6 1.6E+02 0.0034 21.1 3.3 31 165-195 27-57 (139)
273 PF01885 PTS_2-RNA: RNA 2'-pho 20.0 2E+02 0.0043 21.6 4.0 37 67-103 26-62 (186)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=164.86 Aligned_cols=144 Identities=31% Similarity=0.495 Sum_probs=133.3
Q ss_pred CCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCc
Q 026998 50 PKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP 129 (229)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 129 (229)
....+++++|+++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +.+.|+|.+|+.++.......
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~--- 88 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG--- 88 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC---
Confidence 3446688999999999999999999999999999999999999999999999998 899999999999998765431
Q ss_pred hHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHH
Q 026998 130 TALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 209 (229)
...+.++.+|+.||+|++|+|+..+|+.+|+.+|..+++++++.+++.+|.+++|.|+|++|.+.
T Consensus 89 ---------------~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~ 153 (160)
T COG5126 89 ---------------DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKL 153 (160)
T ss_pred ---------------CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHH
Confidence 13489999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 026998 210 FTR 212 (229)
Q Consensus 210 ~~~ 212 (229)
+..
T Consensus 154 ~~~ 156 (160)
T COG5126 154 IKD 156 (160)
T ss_pred Hhc
Confidence 865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=5.9e-25 Score=160.06 Aligned_cols=146 Identities=34% Similarity=0.514 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
.....++..+|..||++++|.|+..+|..+++.+|..++..++..++..+|.+++|.|++.+|+.++...........
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-- 81 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE-- 81 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc--
Confidence 346678999999999999999999999999999999999999999999999999999999999999987643311100
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
.....++.+|+.||++++|+||..||+.+|..+|.+++.++++.+++.+|.+++|.|+|.+|++++..
T Consensus 82 ------------~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ------------ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ------------ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 13368999999999999999999999999999999999999999999999999999999999999875
No 3
>PTZ00183 centrin; Provisional
Probab=99.88 E-value=3.7e-21 Score=141.23 Aligned_cols=143 Identities=25% Similarity=0.408 Sum_probs=128.5
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
+....++..+|..+|.+++|.|+..||..++..+|..++...+..++..++.+++|.|+|.+|+.++.......
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~------ 86 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER------ 86 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC------
Confidence 45677899999999999999999999999999999888999999999999999999999999999886542110
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
...+.+..+|+.+|++++|+|+..||..++..+|..++..++..+|..+|.+++|.|+|++|..++.+
T Consensus 87 ------------~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 87 ------------DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred ------------CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 02357889999999999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q 026998 213 W 213 (229)
Q Consensus 213 ~ 213 (229)
.
T Consensus 155 ~ 155 (158)
T PTZ00183 155 T 155 (158)
T ss_pred c
Confidence 3
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.6e-21 Score=134.75 Aligned_cols=142 Identities=30% Similarity=0.441 Sum_probs=132.2
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
.++.+.++..|..||++++|+|...||..+++.+|..+..+++..++..+++++.|.|+|.+|+..+....... +
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~-d---- 103 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER-D---- 103 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc-C----
Confidence 45668899999999999999999999999999999999999999999999999999999999999988765432 1
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
+.+.+..+|+.+|.|++|.|+..+|+.+.+.+|.+++++++..++..+|.+++|-|+-++|...+++
T Consensus 104 -------------t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 -------------TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred -------------cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 4489999999999999999999999999999999999999999999999999999999999999876
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.88 E-value=4.9e-21 Score=139.10 Aligned_cols=141 Identities=27% Similarity=0.470 Sum_probs=126.5
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
.+....+...|..+|.+++|.|+.++|..++..++..++.+.+..++..++.+++|.|+|.+|+.++.......
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~------ 80 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT------ 80 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC------
Confidence 44567899999999999999999999999999999888889999999999999999999999999887543210
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
.....+..+|..+|.+++|+|+.++|..++...|..++.+++..++..+|.+++|.|+|++|..++.
T Consensus 81 ------------~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 ------------DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred ------------cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 1235788999999999999999999999999999899999999999999999999999999998875
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=3.1e-20 Score=129.16 Aligned_cols=137 Identities=21% Similarity=0.383 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHH
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 133 (229)
.++++++++|..+|.|++|.|..++|+..+.++|-.+++++++.++.. ..|.|+|.-|+.++....... +
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt-d----- 98 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT-D----- 98 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC-C-----
Confidence 388999999999999999999999999999999999999999999966 578999999999998765431 1
Q ss_pred hhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 134 AKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
.++.+..+|+.||.+++|+|..+.|+.+|...|..+++++++.+++.+..+..|.|+|..|+..+++
T Consensus 99 ------------pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 ------------PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred ------------HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 2478999999999999999999999999999999999999999999999999999999999999984
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=3.3e-20 Score=126.89 Aligned_cols=143 Identities=22% Similarity=0.342 Sum_probs=127.8
Q ss_pred CcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCC--CCCCccHHHHHHHHHHHHHccCCc
Q 026998 52 IDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDIN--KDMGMKFNEFIVLLCLVYLLKDDP 129 (229)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~~~ 129 (229)
.+++..+++++|..||..++|.|+..+...+|+.+|.+|++.++...+..+.++ .-.+|+|++|+.++..+.+.
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn---- 81 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN---- 81 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc----
Confidence 356778999999999999999999999999999999999999999999988766 34789999999999987654
Q ss_pred hHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHH
Q 026998 130 TALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 209 (229)
+...+.+.+-+.++.||++++|.|...||+.+|.++|..+++++++.++.... |++|.|+|+.|++.
T Consensus 82 ------------k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 82 ------------KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKH 148 (152)
T ss_pred ------------cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHH
Confidence 23336678888999999999999999999999999999999999999998765 88999999999987
Q ss_pred HH
Q 026998 210 FT 211 (229)
Q Consensus 210 ~~ 211 (229)
+.
T Consensus 149 i~ 150 (152)
T KOG0030|consen 149 IM 150 (152)
T ss_pred Hh
Confidence 65
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-18 Score=128.48 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=123.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhh
Q 026998 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAK 135 (229)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 135 (229)
..+...|...|.+++|.|+.+|+..+|...+ -..+.+.+..|+..+|.+.+|.|.+.||..++..+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------------- 123 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------------- 123 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------------
Confidence 4677889999999999999999999998665 44677889999999999999999999999999876
Q ss_pred hhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 136 SRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
+.++.+|+.||+|++|.|+..||+.+|..+|..++++-++.+++++|...+|.|.|++|+.++....
T Consensus 124 ------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 124 ------------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred ------------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999988899999999999998654
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.74 E-value=6.3e-17 Score=119.93 Aligned_cols=139 Identities=27% Similarity=0.414 Sum_probs=113.2
Q ss_pred cccHHHHHHHHHHhcCC-CCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCC-ccHHHHHHHHHHHHHccCCch
Q 026998 53 DDSLRNCKAIFEKFDED-SNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMG-MKFNEFIVLLCLVYLLKDDPT 130 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~-i~~~eF~~~~~~~~~~~~~~~ 130 (229)
..++..++..|.+++.+ +.|.|+.+||..+. .+..++ -..+++..++.+++|. |+|.+|+..+.......
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~---- 100 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA---- 100 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc----
Confidence 34777899999999999 99999999999988 333344 3556777777777777 99999999998764321
Q ss_pred HHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCCCc--H----HHHHHHHHhcCCCCCCceeh
Q 026998 131 ALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGST--G----RIAIKRFEEMDWDKNGMVNF 203 (229)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~--~----~~~~~~~~~~d~~~~g~I~~ 203 (229)
...++++-+|+.||.+++|+|+++|+.+++..+ |...+ + +.++..|..+|.++||+|+|
T Consensus 101 --------------~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Isf 166 (187)
T KOG0034|consen 101 --------------SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISF 166 (187)
T ss_pred --------------cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcH
Confidence 122689999999999999999999999999988 54444 3 45567888899999999999
Q ss_pred HHHHHHHHHH
Q 026998 204 KEFLFAFTRW 213 (229)
Q Consensus 204 ~eF~~~~~~~ 213 (229)
+||++.+.+.
T Consensus 167 eEf~~~v~~~ 176 (187)
T KOG0034|consen 167 EEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHcC
Confidence 9999998764
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.73 E-value=2.6e-16 Score=116.75 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCC-CCCcccHHHHHHHHHHhccc-CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHh
Q 026998 57 RNCKAIFEKFDED-SNGTIDHEELKKCFHKLEIK-FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (229)
Q Consensus 57 ~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 134 (229)
+++..+|+.|-.. .+|.++..+|+.++..+... -+...+..+|+.+|.+++|.|+|.||+..+.......
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-------- 97 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-------- 97 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc--------
Confidence 3444555555444 48999999999999998764 4456789999999999999999999999998765432
Q ss_pred hhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc----CC-------CCcHHHHHHHHHhcCCCCCCceeh
Q 026998 135 KSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----GE-------GSTGRIAIKRFEEMDWDKNGMVNF 203 (229)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~I~~ 203 (229)
..+.+..+|+.||.||+|+|++.|+..++... |. ....+.+..+|+.+|.|+||.|++
T Consensus 98 -----------~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~ 166 (193)
T KOG0044|consen 98 -----------LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTL 166 (193)
T ss_pred -----------HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccH
Confidence 34677889999999999999999999999877 31 124577889999999999999999
Q ss_pred HHHHHHHHH
Q 026998 204 KEFLFAFTR 212 (229)
Q Consensus 204 ~eF~~~~~~ 212 (229)
+||...+..
T Consensus 167 eef~~~~~~ 175 (193)
T KOG0044|consen 167 EEFIEGCKA 175 (193)
T ss_pred HHHHHHhhh
Confidence 999998764
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.72 E-value=2e-16 Score=126.65 Aligned_cols=140 Identities=24% Similarity=0.331 Sum_probs=127.9
Q ss_pred CCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhccc-CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCC
Q 026998 50 PKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK-FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDD 128 (229)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 128 (229)
...++...++..+|..+|.+++|.++..++...+..+... +..+.+..++..+|.+.+|.|+|.+|...+..
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------- 79 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------- 79 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-------
Confidence 3445677789999999999999999999999999998765 77788999999999999999999999998875
Q ss_pred chHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHH
Q 026998 129 PTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 208 (229)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 208 (229)
.+..+.++|+.+|.+.+|.|+.+|+...|+.+|.+++++.++.+|+.+|.++++.|+++||..
T Consensus 80 -----------------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 80 -----------------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred -----------------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHh
Confidence 347899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 026998 209 AFTRW 213 (229)
Q Consensus 209 ~~~~~ 213 (229)
.+.-+
T Consensus 143 ~~ll~ 147 (463)
T KOG0036|consen 143 HLLLY 147 (463)
T ss_pred hhhcC
Confidence 87643
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.70 E-value=8.7e-16 Score=113.59 Aligned_cols=139 Identities=22% Similarity=0.391 Sum_probs=117.7
Q ss_pred CCCCchhhhhh----ccCCCchhH-HHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHH
Q 026998 3 GIVGKPESATS----TWMPETKLE-AKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHE 77 (229)
Q Consensus 3 g~~s~~~~l~~----~~~~~~~~~-~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~ 77 (229)
|.+++.+.-++ .|.+....+ .-++..+.+...+..++.+|..|+. .+..|+.+|+.+|.|++|+|+..
T Consensus 72 g~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~-------~i~~Wr~vF~~~D~D~SG~I~~s 144 (221)
T KOG0037|consen 72 GRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK-------YINQWRNVFRTYDRDRSGTIDSS 144 (221)
T ss_pred ccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH-------HHHHHHHHHHhcccCCCCcccHH
Confidence 55666666666 666555544 4556666667688999999999998 68899999999999999999999
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhh
Q 026998 78 ELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFL 157 (229)
Q Consensus 78 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 157 (229)
||+++|..+|..++.+..+.+++.++..++|.|.|++|+.++..+ ..+.++|+.+
T Consensus 145 EL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------------------------~~lt~~Fr~~ 199 (221)
T KOG0037|consen 145 ELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------------------------QRLTEAFRRR 199 (221)
T ss_pred HHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------------------------HHHHHHHHHh
Confidence 999999999999999999999999998889999999999999865 6888999999
Q ss_pred cCCCCcceeH--HHHHHH
Q 026998 158 DKNKDGYVSR--SEMTQA 173 (229)
Q Consensus 158 D~~~~G~I~~--~el~~~ 173 (229)
|++.+|.|+. +++..+
T Consensus 200 D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 200 DTAQQGSITISYDDFLQM 217 (221)
T ss_pred ccccceeEEEeHHHHHHH
Confidence 9999997654 555543
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.1e-15 Score=119.26 Aligned_cols=188 Identities=21% Similarity=0.260 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhCCC----------------CcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 026998 23 AKMVEAMQRRAAEGTALKSFNSIILKFPK----------------IDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL 86 (229)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~f~~~~~~~~~----------------~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~ 86 (229)
.....++..+..+..+++.|......... ....+.+-+.-|+..|.|++|.++.+||..+|..-
T Consensus 113 ~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE 192 (325)
T KOG4223|consen 113 EEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE 192 (325)
T ss_pred HHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence 34444555455555556656555333211 01123467889999999999999999999998764
Q ss_pred c-ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcce
Q 026998 87 E-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYV 165 (229)
Q Consensus 87 ~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I 165 (229)
- ..+..-.|..-+.-+|+|+||.|+++||+.-+........+| .+....-...+..+|+|++|++
T Consensus 193 e~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep--------------eWv~~Ere~F~~~~DknkDG~L 258 (325)
T KOG4223|consen 193 EHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP--------------EWVLTEREQFFEFRDKNKDGKL 258 (325)
T ss_pred hcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc--------------ccccccHHHHHHHhhcCCCCcc
Confidence 3 334445678888899999999999999999887654321122 2222344466788999999999
Q ss_pred eHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhcCCCCCCcch
Q 026998 166 SRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGENEDEEE 224 (229)
Q Consensus 166 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~ 224 (229)
+.+|++.++...+......++..++...|.|+||++|++|.+.-.--++|+.+++.+++
T Consensus 259 ~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~FvgSqAtdyge~ 317 (325)
T KOG4223|consen 259 DGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYDVFVGSQATDYGED 317 (325)
T ss_pred CHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCcceeeeeecccchhh
Confidence 99999999998888889999999999999999999999999999999999999977664
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=98.50 Aligned_cols=119 Identities=22% Similarity=0.377 Sum_probs=98.0
Q ss_pred CCCCCchhhhhh----ccCCCchhHHHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHH
Q 026998 2 GGIVGKPESATS----TWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHE 77 (229)
Q Consensus 2 gg~~s~~~~l~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~ 77 (229)
.|.|+..+..+- +..+..+.-.+++..+.. ..+..++.+|..++..........+++..+|+.||++++|.|+..
T Consensus 34 ~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~ 112 (160)
T COG5126 34 DGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIG 112 (160)
T ss_pred CCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHH
Confidence 356666665555 333444444455555444 347889999999988877777888999999999999999999999
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 78 ELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 78 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
++..+++.+|...++++++.++..++.+++|.|+|++|+..+..
T Consensus 113 eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 113 ELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998864
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.53 E-value=5.3e-13 Score=99.16 Aligned_cols=146 Identities=21% Similarity=0.297 Sum_probs=117.8
Q ss_pred HHHHHHHHHHh-cCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHh
Q 026998 23 AKMVEAMQRRA-AEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEA 101 (229)
Q Consensus 23 ~~~~~~l~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 101 (229)
+..+..+.... .|..+..+|+.+++.+.+..+...-...+|+.+|.+++|+|+..||..++..+-.....+.+.-.|+.
T Consensus 29 ~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~l 108 (193)
T KOG0044|consen 29 QQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRL 108 (193)
T ss_pred HHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhhee
Confidence 44444443333 56788999999999887777788888999999999999999999999999887666777778888999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 026998 102 CDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE 176 (229)
Q Consensus 102 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 176 (229)
+|.+++|.|++.+++.++..++........+ ....-..+.+..+|+.+|.|++|.||.+||...+..
T Consensus 109 yD~dgdG~It~~Eml~iv~~i~~m~~~~~~~--------~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 109 YDLDGDGYITKEEMLKIVQAIYQMTGSKALP--------EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ecCCCCceEcHHHHHHHHHHHHHHcccccCC--------cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 9999999999999999999988764331110 122224578889999999999999999999998764
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.49 E-value=1.7e-13 Score=89.76 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcC-CCCcceeHHHHHHHHHh-cCCCCcH-HHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 147 FETLVDAFVFLDK-NKDGYVSRSEMTQAVTE-SGEGSTG-RIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 147 ~~~~~~~F~~~D~-~~~G~I~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
...+..+|+.||+ +++|+|+..||+.++.. +|..++. .+++.+++.+|.|+||.|+|+||+.++.+.+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3678999999999 99999999999999999 7888888 9999999999999999999999999998854
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=8e-13 Score=96.19 Aligned_cols=119 Identities=23% Similarity=0.377 Sum_probs=91.7
Q ss_pred CCCCchhhhhhccC----CCchhHHHHHHHHHHHhcCCCChHHHHHHHHhCCCCcc----cHHHHHHHHHHhcCCCCCcc
Q 026998 3 GIVGKPESATSTWM----PETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDD----SLRNCKAIFEKFDEDSNGTI 74 (229)
Q Consensus 3 g~~s~~~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~----~~~~~~~~F~~~D~~~~G~i 74 (229)
|.++..+....-+. +.......+++.+.....+.+.+.+|..++........ ..+.++++|+.||++++|.|
T Consensus 23 G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~I 102 (151)
T KOG0027|consen 23 GKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFI 102 (151)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcC
Confidence 44554444443222 33333344555554455678889999988776533322 35699999999999999999
Q ss_pred cHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 75 DHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 75 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
|..||+.++..+|...+.+++..+++..+.+++|.|+|.+|+.++..
T Consensus 103 s~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 103 SASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998863
No 18
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.3e-12 Score=102.28 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=121.2
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
.+...++..++.++|.+++|+|+..|+...+....-.....++.+-+..++.+.+|.|+|+++...+.........-...
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 44778899999999999999999999999887765555566778888899999999999999999887643210000000
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
... . .-.....+-..-|++-|.|++|.+|++||..+|-.. ...+.+-.+..-+..+|.|+||+|+++||+.-+.
T Consensus 153 e~~-~----~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 153 EDN-E----EYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred hhc-H----HHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 000 0 001111344568999999999999999999999876 4456777788888899999999999999999998
Q ss_pred HHhc
Q 026998 212 RWCG 215 (229)
Q Consensus 212 ~~~~ 215 (229)
+..+
T Consensus 228 ~~~~ 231 (325)
T KOG4223|consen 228 SHEG 231 (325)
T ss_pred hccC
Confidence 8766
No 19
>PLN02964 phosphatidylserine decarboxylase
Probab=99.44 E-value=2.4e-12 Score=111.65 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=97.5
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-ccCCHHH---HHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCC
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEE---INDLFEACDINKDMGMKFNEFIVLLCLVYLLKDD 128 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 128 (229)
..+.++++++|..+|++++|.+ +..+++.+| ..+++.+ ++.+++.+|.+++|.|++.||+.++..+...
T Consensus 139 ~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~--- 211 (644)
T PLN02964 139 TQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL--- 211 (644)
T ss_pred HHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC---
Confidence 4577899999999999999997 888899999 5888876 8999999999999999999999999864311
Q ss_pred chHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHh-------------cCCCCcH-HHHHHHH
Q 026998 129 PTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE-------------SGEGSTG-RIAIKRF 190 (229)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-------------~~~~~~~-~~~~~~~ 190 (229)
...+.+..+|+.||+|++|+|+.+||+.++.. +|..++. +++..++
T Consensus 212 ----------------~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~ii 271 (644)
T PLN02964 212 ----------------VAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMI 271 (644)
T ss_pred ----------------CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHH
Confidence 13467999999999999999999999999998 5666666 5566555
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=9.4e-13 Score=82.03 Aligned_cols=62 Identities=34% Similarity=0.588 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcH----HHHHHHHHhcCCCCCCceehHHHHHHH
Q 026998 149 TLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTG----RIAIKRFEEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 149 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~----~~~~~~~~~~d~~~~g~I~~~eF~~~~ 210 (229)
+++.+|+.+|++++|+|+.+||..++..++...+. +.+..+|+.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36789999999999999999999999999865544 555566999999999999999999875
No 21
>PTZ00183 centrin; Provisional
Probab=99.39 E-value=2.2e-11 Score=89.16 Aligned_cols=125 Identities=20% Similarity=0.199 Sum_probs=100.1
Q ss_pred HhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cccCCHHHHHHHHHhcCCCCCCCc
Q 026998 32 RAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL-EIKFTEEEINDLFEACDINKDMGM 110 (229)
Q Consensus 32 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i 110 (229)
...|..+..+|..++..+.. ......+..+|..+|.+++|.|+..+|..++... ........+..+|+.+|.+++|.|
T Consensus 29 ~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 29 DGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKI 107 (158)
T ss_pred CCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcC
Confidence 33567888888887765422 2345679999999999999999999999887654 344566789999999999999999
Q ss_pred cHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 026998 111 KFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE 176 (229)
Q Consensus 111 ~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 176 (229)
+..+|..++...... .....+..+|..+|.+++|.|+.++|..++..
T Consensus 108 ~~~e~~~~l~~~~~~-------------------l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 108 SLKNLKRVAKELGET-------------------ITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHHHhCCC-------------------CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999999754211 13367888999999999999999999998864
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.38 E-value=4.5e-12 Score=83.15 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=62.3
Q ss_pred HHHHHHHHhhc-CCCCc-ceeHHHHHHHHHh-----cCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 148 ETLVDAFVFLD-KNKDG-YVSRSEMTQAVTE-----SGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 148 ~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
..+..+|+.|| ++|+| +|+.+||+.+|+. +|...++.+++.+++.+|.|++|+|+|++|+.++...+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 67899999998 79999 6999999999999 78888999999999999999999999999999998754
No 23
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.33 E-value=3.1e-11 Score=98.01 Aligned_cols=149 Identities=17% Similarity=0.261 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHH
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL-EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 133 (229)
....+...|+.+|+.++|.|+......++..+ |+.++=..+..-+ ...+.+|.|.|.+.+..+..-... +
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~-------~ 532 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVIL-------E 532 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHH-------H
Confidence 45678899999999999999999999999875 5666543333222 334568899998877666532111 0
Q ss_pred hhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc----CCCCcHHHHHHHHHhcCCCCCCceehHHHHHH
Q 026998 134 AKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 209 (229)
....-...-+-.....+..+|..+|+|++|.|+.+||+.+++-+ ...++++++..+.+.+|.|+||+|++.||+..
T Consensus 533 ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeA 612 (631)
T KOG0377|consen 533 EAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEA 612 (631)
T ss_pred HHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHH
Confidence 00000011112233567789999999999999999999999987 44689999999999999999999999999999
Q ss_pred HHH
Q 026998 210 FTR 212 (229)
Q Consensus 210 ~~~ 212 (229)
++-
T Consensus 613 Frl 615 (631)
T KOG0377|consen 613 FRL 615 (631)
T ss_pred Hhh
Confidence 874
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.31 E-value=1.2e-10 Score=84.24 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=100.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-ccCCHHHHHHHHHhcCCC
Q 026998 27 EAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEINDLFEACDIN 105 (229)
Q Consensus 27 ~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~ 105 (229)
..+.....|.++..+|..++..+.. ......+..+|..+|.+++|.|+.++|..++.... .......+..+|..+|.+
T Consensus 18 ~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~ 96 (149)
T PTZ00184 18 SLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD 96 (149)
T ss_pred HHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC
Confidence 3333444677888889887765422 22356889999999999999999999999887642 234556789999999999
Q ss_pred CCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 026998 106 KDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVT 175 (229)
Q Consensus 106 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~ 175 (229)
++|.|+..+|..++...... .....+..+|..+|.+++|.|+.+||..++.
T Consensus 97 ~~g~i~~~e~~~~l~~~~~~-------------------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 97 GNGFISAAELRHVMTNLGEK-------------------LTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCCeEeHHHHHHHHHHHCCC-------------------CCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 99999999999888754211 1236788899999999999999999998764
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.30 E-value=2.9e-11 Score=79.32 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcC-CC-CcceeHHHHHHHHHh---cCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 147 FETLVDAFVFLDK-NK-DGYVSRSEMTQAVTE---SGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 147 ~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
...+..+|..||. +| +|+|+.+||+.++.. +|.+++++++..+++.+|.|++|+|+|++|+.++...+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3567889999998 77 899999999999974 58899999999999999999999999999999998754
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.28 E-value=3.9e-11 Score=79.74 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhc-CCCCc-ceeHHHHHHHHHhc-----CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 146 TFETLVDAFVFLD-KNKDG-YVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 146 ~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
.-..+..+|..|| +||+| +|+..||+.++... +...++.++..+++.+|.|++|.|+|+||+.++..++.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 3467888999999 78998 59999999999773 23347789999999999999999999999999988653
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.27 E-value=3.2e-11 Score=80.51 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhhcC-CC-CcceeHHHHHHHHHh-----cCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 146 TFETLVDAFVFLDK-NK-DGYVSRSEMTQAVTE-----SGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 146 ~~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
....++.+|..||. ++ +|+|+.+||+.+|.. +|..++.+++..+++.+|.+++|.|+|.+|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44789999999997 97 699999999999986 4667899999999999999999999999999998864
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=2.4e-11 Score=79.63 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hcccCCH-HHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDE-DSNGTIDHEELKKCFHK-LEIKFTE-EEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 55 ~~~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+..+..+|+.||+ +++|+|+..||+.+++. +|..++. .+++.+++.+|.+++|.|+|.||+.++..+.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45678999999999 99999999999999999 8877777 8999999999999999999999999998764
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.27 E-value=4.6e-11 Score=79.43 Aligned_cols=69 Identities=23% Similarity=0.371 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhc-CCCCc-ceeHHHHHHHHHh-cCC----CCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 146 TFETLVDAFVFLD-KNKDG-YVSRSEMTQAVTE-SGE----GSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 146 ~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-~~~----~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
..+.++++|..|| ++++| +|+..||+.+|.. +|. ..+.++++.++..+|.+++|.|+|++|+.++...+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 4478999999997 99999 5999999999986 443 45889999999999999999999999999998764
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.23 E-value=6.1e-11 Score=73.77 Aligned_cols=62 Identities=32% Similarity=0.652 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCH----HHHHHHHHhcCCCCCCCccHHHHHHHH
Q 026998 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTE----EEINDLFEACDINKDMGMKFNEFIVLL 119 (229)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~----~~~~~l~~~~d~~~~g~i~~~eF~~~~ 119 (229)
+++.+|+.+|.+++|.|+.+||..++..++...+. +.++.+++.+|.+++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 37889999999999999999999999999866544 456666999999999999999999865
No 31
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=1.9e-10 Score=81.18 Aligned_cols=99 Identities=22% Similarity=0.382 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhc
Q 026998 23 AKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (229)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (229)
.+++..+.+...+.+++.+|...+.......+...++..+|+.+|-+++|.|+..+|+.+...+|.+++++++..++...
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEA 151 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEA 151 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHh
Confidence 45666666666789999999999777777777999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHH
Q 026998 103 DINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 103 d~~~~g~i~~~eF~~~~~~ 121 (229)
+.+++|.|+-++|...+..
T Consensus 152 d~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 152 DRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cccccccccHHHHHHHHhc
Confidence 9999999999999998763
No 32
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.23 E-value=2.2e-10 Score=85.19 Aligned_cols=119 Identities=19% Similarity=0.321 Sum_probs=102.7
Q ss_pred CCCCchhhhhhccCCCchhHHHHHHHHHHHhcCC-CChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHH
Q 026998 3 GIVGKPESATSTWMPETKLEAKMVEAMQRRAAEG-TALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKK 81 (229)
Q Consensus 3 g~~s~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~ 81 (229)
|-++..+....|-...+++...++..+.....+. .++.+|..++..+.........++-+|+.||.+++|.|+.+|+..
T Consensus 49 g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~ 128 (187)
T KOG0034|consen 49 GYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQ 128 (187)
T ss_pred CccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 6688899999998899999999999988777666 999999999998877777778999999999999999999999999
Q ss_pred HHHHh-cccCC--HH----HHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 82 CFHKL-EIKFT--EE----EINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 82 ~l~~~-~~~~~--~~----~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
++..+ +...+ .+ .++.++..+|.++||.|+|+||+.++..
T Consensus 129 iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 129 ILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 99886 33333 32 3678888999999999999999999974
No 33
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.8e-10 Score=93.60 Aligned_cols=156 Identities=16% Similarity=0.259 Sum_probs=123.4
Q ss_pred HHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-ccCCH--HHHHHHHHhcCCCCC
Q 026998 31 RRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTE--EEINDLFEACDINKD 107 (229)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~--~~~~~l~~~~d~~~~ 107 (229)
+.++++.+..+|.++...+ +.+-+.--|..+|+..+|.|+..+|..++-... .+... ..++++-+.++.. +
T Consensus 297 ~rg~~kLs~deF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~ 370 (489)
T KOG2643|consen 297 KRGNGKLSIDEFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-G 370 (489)
T ss_pred cCCCccccHHHHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-C
Confidence 3446778899999887754 666778889999999999999999999776653 22222 2466676777554 6
Q ss_pred CCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCCCcHHHH
Q 026998 108 MGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIA 186 (229)
Q Consensus 108 g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~~ 186 (229)
..|+++||.+++...... ..+..|...|-. -.+.|+..+|+++.... |..+++..+
T Consensus 371 ~gISl~Ef~~Ff~Fl~~l----------------------~dfd~Al~fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVv 427 (489)
T KOG2643|consen 371 KGISLQEFKAFFRFLNNL----------------------NDFDIALRFYHM-AGASIDEKTFQRAAKVVTGVELSDHVV 427 (489)
T ss_pred CCcCHHHHHHHHHHHhhh----------------------hHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCccccccee
Confidence 679999999999877544 455556665533 45789999999999877 999999999
Q ss_pred HHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 187 IKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 187 ~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
+-+|.-||.|+||.++++||+.++++.+.
T Consensus 428 dvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 428 DVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred eeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 99999999999999999999999998653
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.20 E-value=8.2e-11 Score=70.11 Aligned_cols=52 Identities=31% Similarity=0.532 Sum_probs=49.3
Q ss_pred CCcceeHHHHHHHHHhcCCC-CcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 161 KDGYVSRSEMTQAVTESGEG-STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
.+|.|+.++|+.+|..+|.. ++++++..+|..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999999875
No 35
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.18 E-value=2.3e-10 Score=75.06 Aligned_cols=68 Identities=21% Similarity=0.431 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFD-EDSNG-TIDHEELKKCFHK-----LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 55 ~~~~~~~~F~~~D-~~~~G-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
.+..+..+|+.|| ++++| .|+..||+.+++. +|..+++.+++.+++.+|.+++|.|+|.+|+.++...
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567999999998 79999 6999999999999 8888899999999999999999999999999988764
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.17 E-value=5.9e-10 Score=78.22 Aligned_cols=118 Identities=18% Similarity=0.333 Sum_probs=103.3
Q ss_pred CCCCchhhhhhccCCCchhHHHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 026998 3 GIVGKPESATSTWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKC 82 (229)
Q Consensus 3 g~~s~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~ 82 (229)
|++..+++..-.-..++..+.+.+..|.+..++.+++-.|..++.......++...+..+|..||++++|.|....|+.+
T Consensus 47 G~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~ 126 (171)
T KOG0031|consen 47 GFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLREL 126 (171)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 45555555554444566677788888888889999999999998887777888999999999999999999999999999
Q ss_pred HHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 026998 83 FHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (229)
Q Consensus 83 l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 120 (229)
|...|-..+.++++.+++.+..+..|.++|..|+..+.
T Consensus 127 Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 127 LTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999998886
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=3.8e-10 Score=74.12 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=60.2
Q ss_pred hHHHHHHHHHh-hcCCCCc-ceeHHHHHHHHHhc-----CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 146 TFETLVDAFVF-LDKNKDG-YVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 146 ~~~~~~~~F~~-~D~~~~G-~I~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
....+..+|+. +|++|+| +|+.+||+.++... +...++.++..+++.+|.|++|.|+|+||+.++...+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 34678899998 7788876 99999999999886 3456789999999999999999999999999998764
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=2.8e-10 Score=75.03 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhcC--CCCcceeHHHHHHHHHh-cCCC----CcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 146 TFETLVDAFVFLDK--NKDGYVSRSEMTQAVTE-SGEG----STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 146 ~~~~~~~~F~~~D~--~~~G~I~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
....++.+|..||+ +++|+|+.++|+.++.. +|.. .+..++..++..+|.+++|.|+|++|+.++...+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34678999999999 89999999999999986 4543 3589999999999999999999999999998764
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=2.1e-10 Score=71.47 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 151 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 151 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
+.+|..+|++++|.|+.+|++.++...| ++..++..++..+|.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999999887 588999999999999999999999999988764
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=5.7e-10 Score=74.75 Aligned_cols=64 Identities=27% Similarity=0.364 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
..+..+|..+|++++|.|+.++++.++...| ++.+++..++..+|.+++|.|+|++|+.++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 6789999999999999999999999999876 789999999999999999999999999998764
No 41
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.11 E-value=6.6e-10 Score=77.22 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=81.2
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 026998 96 NDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVT 175 (229)
Q Consensus 96 ~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~ 175 (229)
+++...+..++.|.++|++|+.++..+.... +..-.+..+|+.||-|++++|...+|...+.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~A------------------PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMA------------------PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhC------------------hHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 4556667789999999999999998775331 1113567799999999999999999999999
Q ss_pred hc-CCCCcHHHHH----HHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 176 ES-GEGSTGRIAI----KRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 176 ~~-~~~~~~~~~~----~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
++ ...++++++. .++..+|.++||++++.+|..++.+.
T Consensus 136 ~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 136 SLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 88 4458887665 56777899999999999999998763
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.04 E-value=1.8e-09 Score=70.78 Aligned_cols=69 Identities=30% Similarity=0.513 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDE-DS-NGTIDHEELKKCFHK---LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 55 ~~~~~~~~F~~~D~-~~-~G~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+..+-.+|.+|+. ++ +|+|+..||+.+++. +|..++.+++..+++.+|.+++|.|+|.+|+.++..+.
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 45568899999997 67 899999999999974 68889999999999999999999999999999887653
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.03 E-value=2.5e-09 Score=71.58 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHc
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLL 125 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 125 (229)
.++...+..+|..+|++++|.|+..++..+++..+ ++.+++..++..++.+++|.|+|++|+.++....+.
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999865 678899999999999999999999999999887654
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.02 E-value=2.6e-09 Score=70.94 Aligned_cols=69 Identities=22% Similarity=0.422 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHh-----cccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFD-EDSNG-TIDHEELKKCFHKL-----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 55 ~~~~~~~~F~~~D-~~~~G-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+..+..+|..|| ++++| +|+..||+.++... ....+..++..++..+|.+++|.|+|.+|+.++..+.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4556888999999 78998 69999999999763 3345778999999999999999999999999998653
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.02 E-value=2.4e-09 Score=71.40 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----hcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDE-DS-NGTIDHEELKKCFHK-----LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 55 ~~~~~~~~F~~~D~-~~-~G~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
....+..+|..||. ++ +|.|+..||..++.. +|..++.++++.++..++.+++|.|+|.+|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34568999999997 87 799999999999986 4667899999999999999999999999999988754
No 46
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.02 E-value=2.7e-09 Score=70.88 Aligned_cols=69 Identities=19% Similarity=0.418 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-hc----ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFD-EDSNG-TIDHEELKKCFHK-LE----IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 55 ~~~~~~~~F~~~D-~~~~G-~i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+..+.++|..|| .+++| .|+..||+.+++. +| ..++.++++.++..+|.+++|.|+|.+|+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 4567999999997 99999 5999999999986 44 346888999999999999999999999999887653
No 47
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.01 E-value=1.7e-09 Score=65.75 Aligned_cols=61 Identities=34% Similarity=0.546 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHH
Q 026998 150 LVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 150 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 210 (229)
+..+|..+|.+++|.|+.+++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999999999999998765
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=99.01 E-value=2.2e-09 Score=65.14 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=58.4
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHhcCC-CCcHHHHHHHHHhcCCCCC-CceehHHHHHHHHHHh
Q 026998 153 AFVFLDKNKDGYVSRSEMTQAVTESGE-GSTGRIAIKRFEEMDWDKN-GMVNFKEFLFAFTRWC 214 (229)
Q Consensus 153 ~F~~~D~~~~G~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~I~~~eF~~~~~~~~ 214 (229)
+|.+||+++.|.|...+++.+|+.++. ..++.+++.+...+|+++. |.|+++.|+..|+.|.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 799999999999999999999999977 7899999999999999888 9999999999999863
No 49
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.99 E-value=2.3e-09 Score=73.69 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 146 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 146 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
....+..+|..+|+|++|+|+.+||..++ .......+..+|..+|.|+||.||++||+.++...
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 34678899999999999999999999876 22456788999999999999999999999999543
No 50
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.99 E-value=5.1e-09 Score=72.32 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=83.5
Q ss_pred CCchhHHHHHHHHHHHhcC-----CCChHHHHHHHHhC--CCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhccc
Q 026998 17 PETKLEAKMVEAMQRRAAE-----GTALKSFNSIILKF--PKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK 89 (229)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~-----~~~~~~f~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 89 (229)
-.+|...++.+.+.+..+. ..+|..|.-++..+ .+.....+.+.+..+.||+.++|.|...||+.+|..+|..
T Consensus 41 G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGek 120 (152)
T KOG0030|consen 41 GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK 120 (152)
T ss_pred cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhh
Confidence 4455666677776655543 46677777776665 3345567899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 026998 90 FTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (229)
Q Consensus 90 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 120 (229)
+++++++.+++.. -+.+|.|+|+.|+..+.
T Consensus 121 l~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 121 LTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 9999999999876 57789999999998764
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.99 E-value=3.1e-09 Score=66.11 Aligned_cols=62 Identities=23% Similarity=0.447 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 60 KAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
+.+|..+|++++|.|+..|+..++...|. +.+++..++..++.+++|.|+|.+|+.++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999998874 788899999999999999999999999987653
No 52
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.95 E-value=4.7e-09 Score=68.99 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcCC--CCcceeHHHHHHHHH-hcCCCCc----HHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 147 FETLVDAFVFLDKN--KDGYVSRSEMTQAVT-ESGEGST----GRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 147 ~~~~~~~F~~~D~~--~~G~I~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
...+..+|..|+.. ++|+|+.+||+.++. .+|..++ +.+++.+|..+|.+++|.|+|++|+.++...+.
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 36778899999865 479999999999997 4566666 899999999999999999999999999987643
No 53
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.95 E-value=5.3e-09 Score=68.85 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-hccc----CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 54 DSLRNCKAIFEKFDE--DSNGTIDHEELKKCFHK-LEIK----FTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~--~~~G~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
..++.+..+|..+|+ +++|.|+..+|..+++. +|.. ++..++..++..++.+++|.|+|.+|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456779999999999 89999999999999986 4533 358899999999999999999999999998754
No 54
>PLN02964 phosphatidylserine decarboxylase
Probab=98.94 E-value=8.9e-09 Score=89.79 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=90.8
Q ss_pred CCcccHHHHHHHHHH--hc-ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhH
Q 026998 71 NGTIDHEELKKCFHK--LE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATF 147 (229)
Q Consensus 71 ~G~i~~~e~~~~l~~--~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (229)
...++.+++...... .. .....+++.+.|..+|.+++|.+ +..++..+... .|. ....
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~--~pt-------------e~e~ 178 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIE--DPV-------------ETER 178 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCC--CCC-------------HHHH
Confidence 345677776654432 11 11223567888999999999997 33333332100 110 0011
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
..+..+|..+|.+++|.|+.+||..++..++...+++++..+|+.+|.+++|.|+++||...+..+
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 237899999999999999999999999998877899999999999999999999999999999885
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.89 E-value=2.7e-08 Score=91.24 Aligned_cols=133 Identities=23% Similarity=0.440 Sum_probs=107.0
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCC-------HHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHc
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFT-------EEEINDLFEACDINKDMGMKFNEFIVLLCLVYLL 125 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-------~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 125 (229)
.+...+|.-+|..||++.+|.++..+|..+|+.+|+.++ +.+++.++...|++.+|.|+..+|+++|......
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 445678899999999999999999999999999997762 3479999999999999999999999999864321
Q ss_pred cCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCC-------
Q 026998 126 KDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKN------- 198 (229)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~------- 198 (229)
++. ....|..+|+.+|. +.-||+.+++.+. +|+.+++.++..+.+..+
T Consensus 2329 ----------------NI~-s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~ 2383 (2399)
T KOG0040|consen 2329 ----------------NIL-SSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSD 2383 (2399)
T ss_pred ----------------ccc-chHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCc
Confidence 111 23589999999998 8899999998764 678888887777654332
Q ss_pred -CceehHHHHHHH
Q 026998 199 -GMVNFKEFLFAF 210 (229)
Q Consensus 199 -g~I~~~eF~~~~ 210 (229)
+.+.|.+|.+.+
T Consensus 2384 q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2384 QVALDYKDFVNSL 2396 (2399)
T ss_pred cccccHHHHHHHH
Confidence 357888887765
No 56
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.7e-08 Score=81.81 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=96.5
Q ss_pred hhhhhhccCCCchhHHHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc
Q 026998 8 PESATSTWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE 87 (229)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 87 (229)
..++.|| .+....-+.++..+.....+..++.+|...+.. ...++..+|..+|.+.+|.|.++|+...++.+|
T Consensus 40 ~~~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g 112 (463)
T KOG0036|consen 40 LEKLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG 112 (463)
T ss_pred HHhcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhC
Confidence 3566777 566667788888888888899999999998874 788999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 88 IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 88 ~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
..++.++++.++...|+++++.|++++|..++...
T Consensus 113 i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 113 IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred CccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 99999999999999999999999999999988754
No 57
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.89 E-value=8e-09 Score=61.41 Aligned_cols=52 Identities=37% Similarity=0.659 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHHhccc-CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 70 SNGTIDHEELKKCFHKLEIK-FTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 70 ~~G~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
.+|.|+.++|+.++..+|.. ++.+++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999998863
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.88 E-value=1.9e-08 Score=66.03 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=58.6
Q ss_pred cHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHhc-----ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEK-FDEDSNG-TIDHEELKKCFHKLE-----IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 55 ~~~~~~~~F~~-~D~~~~G-~i~~~e~~~~l~~~~-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
.+..+..+|.. +|++++| +|+..||+.++.... ...++.+++.+++.+|.+++|.|+|++|+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 55678999999 6788876 999999999998862 34567889999999999999999999999998865
No 59
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.88 E-value=6.9e-09 Score=84.50 Aligned_cols=159 Identities=22% Similarity=0.272 Sum_probs=111.9
Q ss_pred CChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh------ccc--------CC-HHHHH--HHH
Q 026998 37 TALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL------EIK--------FT-EEEIN--DLF 99 (229)
Q Consensus 37 ~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~------~~~--------~~-~~~~~--~l~ 99 (229)
.+...|.+.+--+....-..+.+.-+|+.||.|++|.|+.+||..+.+-+ |.. .+ ..++. ...
T Consensus 213 ~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~ 292 (489)
T KOG2643|consen 213 SGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLT 292 (489)
T ss_pred CCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHH
Confidence 44455555443333444567789999999999999999999998877432 210 00 11121 122
Q ss_pred HhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-C
Q 026998 100 EACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-G 178 (229)
Q Consensus 100 ~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~ 178 (229)
.-+..++++.+++++|+.++..+. .+.+.--|..+|+..+|.|+..+|..++-.. +
T Consensus 293 yFFG~rg~~kLs~deF~~F~e~Lq-----------------------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~ 349 (489)
T KOG2643|consen 293 YFFGKRGNGKLSIDEFLKFQENLQ-----------------------EEILELEFERFDKGDSGAISEVDFAELLLAYAG 349 (489)
T ss_pred HhhccCCCccccHHHHHHHHHHHH-----------------------HHHHHHHHHHhCcccccccCHHHHHHHHHHHcc
Confidence 346788999999999999998763 3567778999999999999999999998776 3
Q ss_pred CCCcH--HHHHHHHHhcCCCCCCceehHHHHHHHHHHhcCCCC
Q 026998 179 EGSTG--RIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGEN 219 (229)
Q Consensus 179 ~~~~~--~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~ 219 (229)
.+... ..++.+-+.++.. +..|+++||.+++.-..++++.
T Consensus 350 ~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~df 391 (489)
T KOG2643|consen 350 VNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDF 391 (489)
T ss_pred cchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHH
Confidence 33222 2455666666654 6789999999998866655543
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.85 E-value=2.2e-08 Score=60.69 Aligned_cols=61 Identities=34% Similarity=0.628 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 026998 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLL 119 (229)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 119 (229)
+..+|..+|.+++|.|+.+++..++..++...+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=98.84 E-value=1.7e-08 Score=61.23 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcc-cCCHHHHHHHHHhcCCCCC-CCccHHHHHHHHHHH
Q 026998 61 AIFEKFDEDSNGTIDHEELKKCFHKLEI-KFTEEEINDLFEACDINKD-MGMKFNEFIVLLCLV 122 (229)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~eF~~~~~~~ 122 (229)
.+|..||.++.|.|...++..+|+..+. .+++.+++.+.+.+|+++. |.|+++.|+..|..+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3699999999999999999999999987 8999999999999999988 999999999999753
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.78 E-value=4.8e-08 Score=71.72 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
+.+..+|+.||.+.+|+|+..||+.+|.++|.+-|---++.+++.+|.|.+|+|+|.+|+-.++..+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 5677899999999999999999999999999998988999999999999999999999999988754
No 63
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.77 E-value=7.3e-08 Score=79.25 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=97.8
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhc----CCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhh
Q 026998 62 IFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEAC----DINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSR 137 (229)
Q Consensus 62 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 137 (229)
-|-.+|++++|.|+.++|...-.. .++.--++++|... -.-.+|+++|++|+.++.......
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~----------- 348 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD----------- 348 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC-----------
Confidence 388899999999999999875433 34566788999832 344689999999999999875332
Q ss_pred cCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-------CC-C-CcHHHHHHHHHhcCCCCCCceehHHHHH
Q 026998 138 MGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-------GE-G-STGRIAIKRFEEMDWDKNGMVNFKEFLF 208 (229)
Q Consensus 138 ~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-------~~-~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 208 (229)
+...+...|+.+|.+++|.|+..|++-+.... |. . .-...+..+++.+.+...++|+.++|+.
T Consensus 349 --------t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 --------TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred --------CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 22578889999999999999999999887654 21 1 2356677888888888899999999987
No 64
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.74 E-value=6.3e-08 Score=66.63 Aligned_cols=63 Identities=24% Similarity=0.446 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 120 (229)
.....+.-.|..+|.|++|.|+..||..+. ..+....+..++..+|.+++|.|++.||+.++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 466789999999999999999999999876 445677789999999999999999999999993
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.64 E-value=2.6e-07 Score=60.69 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHhcCC--CCCcccHHHHHHHHH-HhcccCC----HHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDED--SNGTIDHEELKKCFH-KLEIKFT----EEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+..+...|..++.. .+|.|+..||+.++. .++..++ .++++.++..+|.+++|.|+|++|+.++..+.
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 345688899999955 589999999999997 4555555 88999999999999999999999999887653
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.60 E-value=5.8e-07 Score=58.55 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhc-----CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
..+..+|..|.. +.++++..||+.++.+. ...-++..++.+|+..|.|+||.|+|.||+.++....
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 567789999974 45799999999999765 3345789999999999999999999999999998753
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.58 E-value=1.1e-07 Score=48.44 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=19.0
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHh
Q 026998 150 LVDAFVFLDKNKDGYVSRSEMTQAVTE 176 (229)
Q Consensus 150 ~~~~F~~~D~~~~G~I~~~el~~~l~~ 176 (229)
+..+|+.||+|++|+|+.+||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456777777777777777777777654
No 68
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.56 E-value=1.5e-06 Score=72.18 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=103.8
Q ss_pred cCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcc------cCCHHHHHHHHHhcCCCCC
Q 026998 34 AEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI------KFTEEEINDLFEACDINKD 107 (229)
Q Consensus 34 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~------~~~~~~~~~l~~~~d~~~~ 107 (229)
.+-+++.+|+.+- ...+.+-..+..+|..||+.++|.+|.+++..++....+ +.+.+.|...| .....
T Consensus 88 Dglisf~eF~afe---~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~ 161 (694)
T KOG0751|consen 88 DGLISFQEFRAFE---SVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRK 161 (694)
T ss_pred cccccHHHHHHHH---hhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHH
Confidence 3445555555442 233445677899999999999999999999999987643 34445555543 33455
Q ss_pred CCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCC-CcHHHH
Q 026998 108 MGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEG-STGRIA 186 (229)
Q Consensus 108 g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~ 186 (229)
..++|.+|..++..+. .+....+|+..|+.++|.||.-++..++-..... +++..=
T Consensus 162 r~~ny~~f~Q~lh~~~-----------------------~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~ 218 (694)
T KOG0751|consen 162 RHLNYAEFTQFLHEFQ-----------------------LEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVE 218 (694)
T ss_pred HhccHHHHHHHHHHHH-----------------------HHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHh
Confidence 6799999999998763 2567889999999999999999999998887433 455444
Q ss_pred HHHHHhcCCCCCCceehHHHHH
Q 026998 187 IKRFEEMDWDKNGMVNFKEFLF 208 (229)
Q Consensus 187 ~~~~~~~d~~~~g~I~~~eF~~ 208 (229)
..+......+...++++..|..
T Consensus 219 ~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 219 ENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred hhhhhhcCCCCccccchHHHHH
Confidence 4444445555566777766654
No 69
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.47 E-value=2.5e-06 Score=64.82 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-c--ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCch--
Q 026998 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKL-E--IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPT-- 130 (229)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~-- 130 (229)
.+.+..+|.+.|.|.+|+|+..|++..+..- . +.-..++.+..|+..|.++||.|++++|...+...........
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 4678999999999999999999998866542 1 2223345667788899999999999999887776543211100
Q ss_pred -------------HHHhh----hhcCCcc-----hHhh-----------------HHHHHHHHHhhcCCCCcceeHHHHH
Q 026998 131 -------------ALRAK----SRMGMPK-----LEAT-----------------FETLVDAFVFLDKNKDGYVSRSEMT 171 (229)
Q Consensus 131 -------------~~~~~----~~~~~~~-----~~~~-----------------~~~~~~~F~~~D~~~~G~I~~~el~ 171 (229)
...-. -++++.. +-.+ ..-+..+.+.+|++|+..++..+|.
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 00000 0010000 0000 1123456677788888777777765
Q ss_pred H-----HHHhcCCCCcHHHHH----HHHHhcCCCCCCceehHHHHHHH
Q 026998 172 Q-----AVTESGEGSTGRIAI----KRFEEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 172 ~-----~l~~~~~~~~~~~~~----~~~~~~d~~~~g~I~~~eF~~~~ 210 (229)
. +=...|.++.+...+ .+=..+|.|.||.++++|...++
T Consensus 260 slpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 260 SLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 3 222235555543333 34445677788888877776664
No 70
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.47 E-value=1.2e-06 Score=64.57 Aligned_cols=70 Identities=26% Similarity=0.499 Sum_probs=64.3
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+++.+..+|..||.+.+|+|+..||+.++.++|..-+.--+..+++..|-|.+|+|+|.+|+-++....
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 4788899999999999999999999999999999887777889999999999999999999998887653
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.43 E-value=3.6e-07 Score=46.56 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 185 IAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 185 ~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
+++.+|+.+|.|++|.|+++||+.++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999876
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.40 E-value=3.9e-06 Score=54.70 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-----cccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL-----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.+..+..+|..|. .+.++++..||+.++..- +....+..++.+++.+|.++||.|+|.||+.++..+.
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3456788999998 446799999999998652 2334577899999999999999999999999998763
No 73
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.39 E-value=1e-05 Score=66.90 Aligned_cols=177 Identities=13% Similarity=0.198 Sum_probs=115.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCC-------------
Q 026998 25 MVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFT------------- 91 (229)
Q Consensus 25 ~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~------------- 91 (229)
+..++.....++.+...|...+.. ........+.++++.++..+.|.+...+|...|+.+-...+
T Consensus 144 ~f~k~~~d~~g~it~~~Fi~~~~~--~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~ 221 (493)
T KOG2562|consen 144 TFRKIDGDDTGHITRDKFINYWMR--GLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQER 221 (493)
T ss_pred hhhhhccCcCCceeHHHHHHHHHh--hhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHH
Confidence 334444444556666666665542 22334566777888899999999998888888776521111
Q ss_pred --HHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH--ccCCchHHHhhhhcCCcchHhhHHHHHHH---HHhhcCCCCcc
Q 026998 92 --EEEINDLFEACDINKDMGMKFNEFIVLLCLVYL--LKDDPTALRAKSRMGMPKLEATFETLVDA---FVFLDKNKDGY 164 (229)
Q Consensus 92 --~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---F~~~D~~~~G~ 164 (229)
...++++|-.++..+.|+|+..+.+.....-.. ......+......+ ..+....+ |..+|+|++|.
T Consensus 222 Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~F-------S~e~f~viy~kFweLD~Dhd~l 294 (493)
T KOG2562|consen 222 YAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYF-------SYEHFYVIYCKFWELDTDHDGL 294 (493)
T ss_pred HHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhhe-------eHHHHHHHHHHHhhhccccccc
Confidence 112677887889999999999987655443221 11111111111111 22333444 88899999999
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHHHHhc----CCCCCCceehHHHHHHHHHH
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKRFEEM----DWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~I~~~eF~~~~~~~ 213 (229)
|+.++|...... .++.--++.+|.++ -...+|+++|++|+.++...
T Consensus 295 idk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 295 IDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred cCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 999999987643 36788899999943 34679999999999998764
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=7.1e-07 Score=46.38 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHH-hcC
Q 026998 149 TLVDAFVFLDKNKDGYVSRSEMTQAVT-ESG 178 (229)
Q Consensus 149 ~~~~~F~~~D~~~~G~I~~~el~~~l~-~~~ 178 (229)
+++.+|+.||++++|+|+.+||+.+|. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367799999999999999999999998 454
No 75
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.34 E-value=7.3e-07 Score=70.31 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=109.3
Q ss_pred cCCCChHHHHHHHHhCCCC-cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccH
Q 026998 34 AEGTALKSFNSIILKFPKI-DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKF 112 (229)
Q Consensus 34 ~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~ 112 (229)
+-..++.+|..+...+... ..-+..+...-......+.+.|...||..-++ ...+ ..+..+|..+|.+++|.++|
T Consensus 203 pm~a~l~eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~ 278 (412)
T KOG4666|consen 203 PMSASLPEFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDY 278 (412)
T ss_pred ccccchHHHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccH
Confidence 3345566666554443221 22223333333333345566777777664332 1222 34677899999999999999
Q ss_pred HHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHh
Q 026998 113 NEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEE 192 (229)
Q Consensus 113 ~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 192 (229)
.+.+..+..++... .+...+..+|+.|+.+-||.++.++|-.+|+.. ..+..-.+-.+|..
T Consensus 279 re~v~~lavlc~p~------------------~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~ 339 (412)
T KOG4666|consen 279 RETVKTLAVLCGPP------------------VTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPS 339 (412)
T ss_pred HHHhhhheeeeCCC------------------CcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchh
Confidence 99988887665321 133678899999999999999999999999876 23566677789999
Q ss_pred cCCCCCCceehHHHHHHHHHH
Q 026998 193 MDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 193 ~d~~~~g~I~~~eF~~~~~~~ 213 (229)
++...+|+|+|.+|.+++...
T Consensus 340 i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 340 IEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhcccCcceeHHHHHHHHHhC
Confidence 999999999999999988653
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.29 E-value=1.5e-05 Score=66.52 Aligned_cols=136 Identities=15% Similarity=0.230 Sum_probs=91.5
Q ss_pred cHHHHHHHHHH---hcCCCCCcccHHHHHHHHHH-hccc-CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCc
Q 026998 55 SLRNCKAIFEK---FDEDSNGTIDHEELKKCFHK-LEIK-FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP 129 (229)
Q Consensus 55 ~~~~~~~~F~~---~D~~~~G~i~~~e~~~~l~~-~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 129 (229)
...+++.+|.. .++++.-.++.++|....-. ++.. ..++.+..+-...|..+||-|+|.||+++-..++..+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD--- 107 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD--- 107 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch---
Confidence 44556666654 45788889999999764433 3433 3444444444556778899999999999877765432
Q ss_pred hHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCC------CCcHHHHHHHHHhcCCCCCCceeh
Q 026998 130 TALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGE------GSTGRIAIKRFEEMDWDKNGMVNF 203 (229)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~~~g~I~~ 203 (229)
.....+|..||+.++|.+|.+++..++..... +.+.+-+... +..+..-.++|
T Consensus 108 ------------------al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~---Fg~~~~r~~ny 166 (694)
T KOG0751|consen 108 ------------------ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH---FGDIRKRHLNY 166 (694)
T ss_pred ------------------HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHH---hhhHHHHhccH
Confidence 56778999999999999999999999987722 2233333332 23334456777
Q ss_pred HHHHHHHHHHh
Q 026998 204 KEFLFAFTRWC 214 (229)
Q Consensus 204 ~eF~~~~~~~~ 214 (229)
.+|.+++..+.
T Consensus 167 ~~f~Q~lh~~~ 177 (694)
T KOG0751|consen 167 AEFTQFLHEFQ 177 (694)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 77
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.28 E-value=5.5e-06 Score=57.94 Aligned_cols=109 Identities=19% Similarity=0.349 Sum_probs=86.8
Q ss_pred hccCCCchhHHHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-ccCC
Q 026998 13 STWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFT 91 (229)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~ 91 (229)
-|-...+|..+.+.+.+-..+.|..++..|..++..+.-.....-.+.-+|+.+|-|+++.|...++...+..+. -.++
T Consensus 64 MPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 64 MPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred ChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 344466677777777777777889999999988777644445555677889999999999999999999998874 3466
Q ss_pred HHH----HHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 92 EEE----INDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 92 ~~~----~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
.++ ++.++...|.++||.+++.+|-.++..
T Consensus 144 ~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 144 DEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 665 456777889999999999999988764
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.18 E-value=1.5e-05 Score=53.72 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
+.+..+|..+|. ++|.|+.++.+.+|...| ++.+.+..++...|.+++|.++++||+-+|.-
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 678889999985 689999999999999887 89999999999999999999999999988764
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.17 E-value=3.6e-06 Score=43.69 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-Hhc
Q 026998 58 NCKAIFEKFDEDSNGTIDHEELKKCFH-KLE 87 (229)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~-~~~ 87 (229)
+++.+|+.+|.+++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 564
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.15 E-value=5.8e-06 Score=68.74 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=51.3
Q ss_pred HhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 144 EATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 144 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
.+....++.+|+.+|.+++|+|+.+||.. +..+|+.+|.|++|.|+++||...+.....
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 34557788999999999999999999942 578999999999999999999999987543
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.13 E-value=2e-05 Score=53.17 Aligned_cols=69 Identities=20% Similarity=0.478 Sum_probs=59.9
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 124 (229)
++..+.+..+|..+++ ++|.|+..+...++...+ ++.+.+..+|...|.+.+|.+++.||+.+|..+..
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 4567789999999986 589999999999998875 77788999999999999999999999999987643
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.11 E-value=5.1e-06 Score=40.72 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=17.7
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHH
Q 026998 151 VDAFVFLDKNKDGYVSRSEMTQAV 174 (229)
Q Consensus 151 ~~~F~~~D~~~~G~I~~~el~~~l 174 (229)
..+|+.+|+|++|.|+.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457777888888888888877653
No 83
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.09 E-value=5.6e-05 Score=66.32 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=116.2
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHH
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 133 (229)
.....+..+|...|++++|.++..+...++..++..+....+..+|+.++..+++.+...+|+.+.......
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-------- 204 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-------- 204 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--------
Confidence 345678999999999999999999999999999999999999999999988899999999999988765422
Q ss_pred hhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc--CCCCcHHHHHHHHHhcCCC----CCCceehHHHH
Q 026998 134 AKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWD----KNGMVNFKEFL 207 (229)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~----~~g~I~~~eF~ 207 (229)
..+..+|..+-. +.++++.++|..+|... ...++.+.++.+++.+... ..+.++++.|.
T Consensus 205 --------------pev~~~f~~~s~-~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~ 269 (746)
T KOG0169|consen 205 --------------PEVYFLFVQYSH-GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFT 269 (746)
T ss_pred --------------chHHHHHHHHhC-CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHH
Confidence 367778887754 48999999999999988 2358889999999988643 45679999999
Q ss_pred HHHHHHh
Q 026998 208 FAFTRWC 214 (229)
Q Consensus 208 ~~~~~~~ 214 (229)
.++.+-.
T Consensus 270 ~yL~S~~ 276 (746)
T KOG0169|consen 270 RYLFSPD 276 (746)
T ss_pred HHhcCcc
Confidence 9998743
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.06 E-value=2.3e-05 Score=44.95 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=41.5
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
.++..|++.+|+.+++.+++.-+..+|+.+|.+++|.+.-+||..++...
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999998763
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.03 E-value=2.5e-05 Score=44.77 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 73 TIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 73 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
.++..|++.+|+.+++.+++..+..+|+.+|.+++|.+..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999998764
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.99 E-value=2.8e-05 Score=64.02 Aligned_cols=67 Identities=30% Similarity=0.509 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh----cccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKL----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
...+..+|+.+|.|++|.|+..||+.+..-+ +...+..++..+...+|.++||.|++.||+.++...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 3568899999999999999999999987765 456788899999999999999999999999998765
No 87
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.92 E-value=0.00015 Score=62.08 Aligned_cols=155 Identities=19% Similarity=0.326 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hcccCCHHHHHHHH---HhcCCCC--CCCccHHHHHHHHHHHHHccC
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHK-LEIKFTEEEINDLF---EACDINK--DMGMKFNEFIVLLCLVYLLKD 127 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~---~~~d~~~--~g~i~~~eF~~~~~~~~~~~~ 127 (229)
.....|.++|...|.|.+|.++-.|+..+-.. ++..+...++..+- ...-+++ ++.++..-|+.+...+....+
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr 271 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGR 271 (625)
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcc
Confidence 35678999999999999999999999887654 45566665544443 3332322 456777889888888887777
Q ss_pred CchHHHhhhhcCCcch-----------------------HhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCC-CCcH
Q 026998 128 DPTALRAKSRMGMPKL-----------------------EATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGE-GSTG 183 (229)
Q Consensus 128 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~-~~~~ 183 (229)
+...+..+++++.... ..-.+-+..+|..||.|+||-++..||..++..++. +.+.
T Consensus 272 ~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~ 351 (625)
T KOG1707|consen 272 HETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTS 351 (625)
T ss_pred ccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCC
Confidence 7777777777765331 112345678999999999999999999999998832 2111
Q ss_pred HHHHHHHH-hcCCCCCCceehHHHHHHHHH
Q 026998 184 RIAIKRFE-EMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 184 ~~~~~~~~-~~d~~~~g~I~~~eF~~~~~~ 212 (229)
..+. ....+..|.++|+.|++.|.-
T Consensus 352 ----~~~~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 352 ----SPYKDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred ----CcccccceecccceeehhhHHHHHHH
Confidence 0000 112347899999999998863
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.90 E-value=9.7e-05 Score=61.58 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHH-HHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHh
Q 026998 23 AKMVEAMQRRAAEGTALKSFNS-IILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEA 101 (229)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 101 (229)
.++-+-++.+......+..+.. .+............+..+|+.+|.+++|.|+..||.. +..+|..
T Consensus 299 ekl~egi~~F~~d~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~ 365 (391)
T PRK12309 299 EKLDEGIKGFSKALETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDA 365 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHH
Confidence 3344444444433333333322 2332344555677899999999999999999999942 5779999
Q ss_pred cCCCCCCCccHHHHHHHHHHHH
Q 026998 102 CDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 102 ~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
+|.+++|.|+++||...+....
T Consensus 366 ~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 366 LDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998654
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.86 E-value=1e-05 Score=55.54 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHH
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 209 (229)
...+...|..+|.|++|.|+..|+..+...+ .-....+..+++..|.|+||.||+.|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3577788999999999999999999886644 235557899999999999999999999753
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.85 E-value=2.6e-05 Score=38.17 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 026998 59 CKAIFEKFDEDSNGTIDHEELKKCF 83 (229)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l 83 (229)
++.+|+.+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888999999999999888753
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00067 Score=59.76 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=115.4
Q ss_pred hccCCCchhHHHHHHHHHHHhc--CCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccC
Q 026998 13 STWMPETKLEAKMVEAMQRRAA--EGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKF 90 (229)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 90 (229)
.+|........+.-..+....+ +..+-...+.++.+ ..-....+..+|..-|-|+||.++..||.-+++-+.+.+
T Consensus 6 n~WavT~~Er~K~~~qF~~Lkp~~gfitg~qArnfflq---S~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 6 NPWAVTDEERQKHDAQFGQLKPGQGFITGDQARNFFLQ---SGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CccccchHHHHHHHHHHhccCCCCCccchHhhhhhHHh---cCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 3677776666676666655543 34555555555544 222345678889999999999999999988887654433
Q ss_pred CHHH----HH-HHHHhcCCC--------CCCCccHHHHHHHHHHHHH----------------ccCCchHHH--------
Q 026998 91 TEEE----IN-DLFEACDIN--------KDMGMKFNEFIVLLCLVYL----------------LKDDPTALR-------- 133 (229)
Q Consensus 91 ~~~~----~~-~l~~~~d~~--------~~g~i~~~eF~~~~~~~~~----------------~~~~~~~~~-------- 133 (229)
.--. +- .++.....+ +-|.|++.+=+.-...... ...++..+.
T Consensus 83 qG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~ 162 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSN 162 (1118)
T ss_pred cCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Confidence 2211 11 133322111 1233333221111000000 000000000
Q ss_pred --------------------hhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhc
Q 026998 134 --------------------AKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM 193 (229)
Q Consensus 134 --------------------~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 193 (229)
....|..+. ...-.++.+|..+|+...|+||-..-+.+|...+ +....+..+...-
T Consensus 163 spl~~~ss~se~~~~~~s~~q~~eWAVp~--~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~Ls 238 (1118)
T KOG1029|consen 163 SPLPHDSSVSEGRPSIESVNQLEEWAVPQ--HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLS 238 (1118)
T ss_pred CCCCCCcchhhcCccchhhhhhhhccccc--hhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeee
Confidence 011111111 1233577899999999999999999999998776 7888999999999
Q ss_pred CCCCCCceehHHHHHHHH
Q 026998 194 DWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 194 d~~~~g~I~~~eF~~~~~ 211 (229)
|.|+||+++-+||+-.|.
T Consensus 239 Dvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 239 DVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 999999999999987764
No 92
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.66 E-value=0.00017 Score=67.38 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCc-------HHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 146 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGST-------GRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 146 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
....+..+|+.||++.+|.++..+|+.+|+.+|..++ +..++.++...|++.+|.|+.++|+++|.+.
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 3456778999999999999999999999999988762 2379999999999999999999999999874
No 93
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.54 E-value=0.00023 Score=46.03 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=54.0
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHhc-CC-CCcHHHHHHHHHhcCCC----CCCceehHHHHHHHHHHh
Q 026998 150 LVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFEEMDWD----KNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 150 ~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~~~~~~ 214 (229)
+..+|..|.. +.+.||.++|..+|... +. .++.+.+..++..+..+ ..+.+++++|.+++.+-.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 6678999955 78999999999999876 54 57999999999998654 479999999999998743
No 94
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00078 Score=45.34 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=46.8
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHhc------CC---C-CcHHHHHHHHHh----cCCCCCCceehHHHHHH
Q 026998 151 VDAFVFLDKNKDGYVSRSEMTQAVTES------GE---G-STGRIAIKRFEE----MDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 151 ~~~F~~~D~~~~G~I~~~el~~~l~~~------~~---~-~~~~~~~~~~~~----~d~~~~g~I~~~eF~~~ 209 (229)
...|.+.|-|++|+|+--|+.+++.-. |. + .++.++..+++. -|.|+||.|+|-||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 357899999999999999999988765 22 2 355666666655 47899999999999875
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.34 E-value=8.9e-05 Score=50.91 Aligned_cols=63 Identities=27% Similarity=0.437 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIV 117 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 117 (229)
......+.=.|..+|.|++|.|+..|+..+...+ .+.+.=+..++..+|.++|+.|++.|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456677788999999999999999999876544 44555578899999999999999999875
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.28 E-value=0.0013 Score=55.66 Aligned_cols=71 Identities=28% Similarity=0.521 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhccc---CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK---FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 124 (229)
.+....+.+.|...| +++|.++..++..++...+.. ...++++.++...+.+.+|.|+|++|+..+..+..
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 346678999999999 999999999999999987643 35788999999999999999999999998876654
No 97
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.27 E-value=0.00036 Score=55.47 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhh
Q 026998 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKL-EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAK 135 (229)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 135 (229)
..+...|..||.+++|.+++.|....+.-+ +...+...|+-.|+.++...||.+.-.+|--++......
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv---------- 328 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV---------- 328 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc----------
Confidence 568899999999999999999988777655 566778889999999999999999987776666543322
Q ss_pred hhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc
Q 026998 136 SRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES 177 (229)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 177 (229)
..-.+...|+.++...+|+|+.++|+++....
T Consensus 329 ----------~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 329 ----------EVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred ----------ceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 11245668999999999999999999988765
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.24 E-value=0.0018 Score=54.86 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCC---CcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEG---STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
..+...|..+| +++|+|+..++..++.+.+.. ...++++.++...+.|.+|+|+|++|+..+...
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 46788999999 999999999999999988553 357899999999999999999999999977653
No 99
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.10 E-value=0.00056 Score=52.33 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhc---CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTES---GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
...+..+|...|.+.+|+||..|+++....- ...-+.++-+..|+..|+|+||.|+++||.--+...
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 3678899999999999999999999987654 222244566778999999999999999998766543
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.90 E-value=0.0019 Score=31.66 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=18.3
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHh
Q 026998 150 LVDAFVFLDKNKDGYVSRSEMTQAVTE 176 (229)
Q Consensus 150 ~~~~F~~~D~~~~G~I~~~el~~~l~~ 176 (229)
++.+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 345677777777777777777776653
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.72 E-value=0.0025 Score=31.26 Aligned_cols=27 Identities=41% Similarity=0.683 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 026998 59 CKAIFEKFDEDSNGTIDHEELKKCFHK 85 (229)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~ 85 (229)
+..+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 556778888888888888888777654
No 102
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.65 E-value=0.031 Score=40.85 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcccC------------------------------------------------
Q 026998 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEIKF------------------------------------------------ 90 (229)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~------------------------------------------------ 90 (229)
+.+-..-||.|++|.|.+-|-...++.+|..+
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 44445568999999999999888887776532
Q ss_pred -----CHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcce
Q 026998 91 -----TEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYV 165 (229)
Q Consensus 91 -----~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I 165 (229)
.++.++.+|..++....+.+++.|...++..-... .+|...- ...-+...+|... ++.+|.+
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~-~D~~GW~-----------a~~~EW~~~y~L~-~d~dG~l 155 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNA-NDPFGWF-----------AAFFEWGALYILA-KDKDGFL 155 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcccc-CCcchhh-----------hhhhHHHHHHHHH-cCcCCcE
Confidence 33448899999988888899999998888764322 1221110 0112333444443 6779999
Q ss_pred eHHHHHHHHH
Q 026998 166 SRSEMTQAVT 175 (229)
Q Consensus 166 ~~~el~~~l~ 175 (229)
.+++++.+..
T Consensus 156 ~Ke~iR~vYD 165 (174)
T PF05042_consen 156 SKEDIRGVYD 165 (174)
T ss_pred eHHHHhhhcc
Confidence 9999998764
No 103
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.53 E-value=0.0054 Score=49.36 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=57.7
Q ss_pred hHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 143 LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 143 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
.......+..+|..+|.+.+|.|+..||+.+- ..-++.-++.+|...|...||.|+-.|++..+..
T Consensus 245 ~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 245 LPICKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred CcchhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 33456788899999999999999999999874 4457889999999999999999999999998865
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.017 Score=39.06 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHh------cc----cCCHHHH----HHHHHhcCCCCCCCccHHHHHHH
Q 026998 60 KAIFEKFDEDSNGTIDHEELKKCFHKL------EI----KFTEEEI----NDLFEACDINKDMGMKFNEFIVL 118 (229)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~------~~----~~~~~~~----~~l~~~~d~~~~g~i~~~eF~~~ 118 (229)
-..|+..|-|++|.|+--|+..++... |. .+++.++ +.+++--|.++||.|+|.||+..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 467999999999999999999988754 21 2344444 45555668899999999999864
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.12 E-value=0.017 Score=37.24 Aligned_cols=63 Identities=17% Similarity=0.378 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcc--cCCHHHHHHHHHhcCCC----CCCCccHHHHHHHHHH
Q 026998 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDIN----KDMGMKFNEFIVLLCL 121 (229)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~~~~ 121 (229)
++..+|..+.. +.+.||.++|..+|..-.. ..+...+..++..+..+ ..+.+++..|...+..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36788999966 7899999999999987643 46888999999888554 3689999999999975
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.07 E-value=0.064 Score=38.99 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=49.8
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHhcCC---CCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 151 VDAFVFLDKNKDGYVSRSEMTQAVTESGE---GSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 151 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
...|-.|-+.+...++-..|.++|+.+++ .++..+++.+|..+-..+..+|+|++|+.+|..++
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 34444455666778999999999999943 58999999999998767777899999999998754
No 107
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.0098 Score=54.76 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=117.4
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccC--Cch
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKD--DPT 130 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~--~~~ 130 (229)
.+....+..+|+.+.+. .|.++....+.++..- .++...+-.++..+|.+.+|.+++.+|...+........ -..
T Consensus 125 ~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p 201 (847)
T KOG0998|consen 125 PQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEP 201 (847)
T ss_pred HHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCC
Confidence 33456777888888877 7888888888877554 355556778899999999999999999999988776644 111
Q ss_pred HHHhhhhcC----------------------------------------------------------------CcchHhh
Q 026998 131 ALRAKSRMG----------------------------------------------------------------MPKLEAT 146 (229)
Q Consensus 131 ~~~~~~~~~----------------------------------------------------------------~~~~~~~ 146 (229)
.+....... .......
T Consensus 202 ~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d 281 (847)
T KOG0998|consen 202 VPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSD 281 (847)
T ss_pred CCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHH
Confidence 111000000 0122334
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
...+..+|...|++++|+|+-.+.+.++...| ++...+..+....|..+.|.+++.+|+-.+...
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 55677799999999999999999999998866 899999999999999999999999887776543
No 108
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.76 E-value=0.015 Score=35.90 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCC-------CCceehHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDK-------NGMVNFKEFLFA 209 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~I~~~eF~~~ 209 (229)
+.+..+|+.+ .+++++||.++|++.| +++.++.+...+.... .|..+|..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 6889999999 7889999999999875 4445577777776433 377999988753
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.21 E-value=0.91 Score=41.65 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCC--CCCC-----ccHHHHHHHHHHHHHccCCchHHHhhhhcCC
Q 026998 68 EDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDIN--KDMG-----MKFNEFIVLLCLVYLLKDDPTALRAKSRMGM 140 (229)
Q Consensus 68 ~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~-----i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (229)
.+..|.|....+...+.+- -.+..++..+..+... .... .++..|..++.+++..
T Consensus 159 vn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR--------------- 220 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR--------------- 220 (1189)
T ss_pred ccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc---------------
Confidence 4667777777766655432 2234455555554332 2222 5566667777666533
Q ss_pred cchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc----------CCCCcHHHHHHHHHhcCCCC----CCceehHHH
Q 026998 141 PKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEMDWDK----NGMVNFKEF 206 (229)
Q Consensus 141 ~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~I~~~eF 206 (229)
.++..+|..+..++.-++|.++|..++..- -..+++..+..++..+..|. +|.++-+.|
T Consensus 221 -------~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf 293 (1189)
T KOG1265|consen 221 -------PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGF 293 (1189)
T ss_pred -------hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhh
Confidence 588999999998888999999999999765 22468899999999998764 789999999
Q ss_pred HHHHHH
Q 026998 207 LFAFTR 212 (229)
Q Consensus 207 ~~~~~~ 212 (229)
++++.+
T Consensus 294 ~ryl~g 299 (1189)
T KOG1265|consen 294 VRYLMG 299 (1189)
T ss_pred HHHhhC
Confidence 999876
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=95.14 E-value=0.18 Score=44.59 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CC-CCcH
Q 026998 106 KDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTG 183 (229)
Q Consensus 106 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~-~~~~ 183 (229)
..|.++|.+|..++..+...... ...++..+|..|-. +.+.++.++|..+|... +. ..+.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~-----------------~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~ 74 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAE-----------------PPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTL 74 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCC-----------------ChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCH
Confidence 35799999998877755321000 12688999999965 44789999999999987 43 3677
Q ss_pred HHHHHHHHhcC-------CCCCCceehHHHHHHHHH
Q 026998 184 RIAIKRFEEMD-------WDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 184 ~~~~~~~~~~d-------~~~~g~I~~~eF~~~~~~ 212 (229)
+.+..++..+- ....+.++++.|..++.+
T Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 75 AEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 77777765431 123456899999999975
No 111
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.06 Score=45.67 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=63.7
Q ss_pred CCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCc
Q 026998 51 KIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP 129 (229)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 129 (229)
.-+++-+.+..-|+.+-+|-+|+|+-.--++++.+.. ++-.++..||..+|.+.||.+++.|||+.+..+...++..
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgy 301 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGY 301 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCC
Confidence 3355666778889999999999999999999988764 5666899999999999999999999999998776554333
No 112
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.72 E-value=0.085 Score=45.62 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
....+.-|..+|.++.|+++..+..++|+..+.+++...+..+...++.+..|.+...+|.+.+....+
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 445667899999999999999999999999988899999999999999999999999999999987543
No 113
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.72 E-value=0.34 Score=44.46 Aligned_cols=136 Identities=19% Similarity=0.053 Sum_probs=89.9
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCH-----HHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCC
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTE-----EEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDD 128 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 128 (229)
....++..+|+.+++...|.++++++..+|-.+|.+.-. .++..++...+...-|.|++.+|...|..-...
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~--- 820 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED--- 820 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh---
Confidence 356789999999999999999999999999999987764 234445555555556889999999999865432
Q ss_pred chHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhc-CCCCCCceehHHHH
Q 026998 129 PTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM-DWDKNGMVNFKEFL 207 (229)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~-d~~~~g~I~~~eF~ 207 (229)
......+..+|+.+-++.. +|..+||..-... .+-+.++..+...- +..-.|.++|..|.
T Consensus 821 ---------------l~~~~r~i~s~~d~~ktk~-~lL~eEL~~~~d~---lv~d~~~~e~~~~~~~~~~~r~Ld~~~~s 881 (890)
T KOG0035|consen 821 ---------------LDTELRAILAFEDWAKTKA-YLLLEELVRERDE---LVRDLDIQEMAAYDEDERLPRGLDQVKFS 881 (890)
T ss_pred ---------------hcHHHHHHHHHHHHHcchh-HHHHHHHHhhccH---hhHHHHHHhhcccccCCcccccchHHHHH
Confidence 1134577778888866655 8999999872111 12222222222211 12224457777776
Q ss_pred HHHH
Q 026998 208 FAFT 211 (229)
Q Consensus 208 ~~~~ 211 (229)
..+.
T Consensus 882 ~~~~ 885 (890)
T KOG0035|consen 882 SSLY 885 (890)
T ss_pred HHhh
Confidence 6543
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.1 Score=44.30 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
+.+-..|+.+-.|-.|+|+-.--+.++.+.. +...++..|+...|.+.||.+++.||++.|.-
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 5667789999999999999999999888654 88899999999999999999999999999864
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.29 E-value=0.21 Score=36.62 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCC----------------------------------------------
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGS---------------------------------------------- 181 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~---------------------------------------------- 181 (229)
..+......||.|+||.|.+-|-..-+..+|.++
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3466677889999999999999888887775542
Q ss_pred -------cHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 182 -------TGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 182 -------~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
.++.++.+|..++....+.+++.|..+++.....
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 2788999999999888899999999999887443
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.23 E-value=0.42 Score=45.84 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=53.1
Q ss_pred HHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 152 DAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 152 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
..|+.||+||.|.|+..+|.+++.. ....|..+++-++.....+.+...+|++|..-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4789999999999999999999875 34578999999999999999999999999987754
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=0.15 Score=45.69 Aligned_cols=72 Identities=13% Similarity=0.357 Sum_probs=60.3
Q ss_pred CCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 026998 51 KIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (229)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 124 (229)
........+..+|+.+|+..+|.||-..-+.+|-..+ ++...+..++..-|.|+||.++.+||+-.|.....
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHHHH
Confidence 3344556789999999999999999999999887765 56667888999999999999999999988876543
No 118
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.41 E-value=0.19 Score=40.82 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhc---ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHh
Q 026998 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLE---IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (229)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 134 (229)
+|...|..+-.+.++......+..+-..+. +.+-..++--||..+|.+.|+.++..|+..+-...
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------------ 279 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK------------ 279 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC------------
Confidence 577788888777777777666665543332 22334578888889999999999988877765532
Q ss_pred hhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcC
Q 026998 135 KSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESG 178 (229)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~ 178 (229)
.+..++..|...|...+|.|+..|.-..+...+
T Consensus 280 -----------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 280 -----------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred -----------chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 346888888888888899999888777766554
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.18 E-value=0.072 Score=42.83 Aligned_cols=104 Identities=19% Similarity=0.105 Sum_probs=64.8
Q ss_pred CCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCc-chHhhHH-HHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCCC
Q 026998 105 NKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMP-KLEATFE-TLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGS 181 (229)
Q Consensus 105 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~ 181 (229)
++-..-...+|+..+...... .+..+...-... .....++ .+..-|..+|+|.++.|.+.|++-+=.-+ ...-
T Consensus 292 ~gC~e~KKteFL~~Ll~aL~T----dmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~ 367 (421)
T KOG4578|consen 292 NGCPEKKKTEFLTSLLDALKT----DMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK 367 (421)
T ss_pred CCCCcchhhHHHHHHHHHHhh----hhhhhcccccCCcccCCChhheeeeeeeeecccccCccchhhcchHHHHHHhhcc
Confidence 333445567787777655432 111111111111 1112223 45567999999999999998866543222 1112
Q ss_pred cHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 182 TGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 182 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
...-...+++..|.|+|.+|++.|++..+..
T Consensus 368 ~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 368 PRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred HHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4467778999999999999999999999875
No 120
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.04 E-value=1 Score=29.40 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhc-------CCC----CcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-------GEG----STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-------~~~----~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
++++.+|+.+ .|.+|.++...|..+|..+ |+. -.+.-+..+|... .....|+.+.|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 6788899999 7889999999998888765 221 2567777888876 35678999999999875
No 121
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.44 E-value=1.6 Score=39.39 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=77.8
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 026998 95 INDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAV 174 (229)
Q Consensus 95 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 174 (229)
+..+|...|.+++|.+++.+-..++..+.... ....++..|+..+..+++.+...++..+.
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-------------------~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-------------------SESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhh-------------------hHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 67889999999999999999888887664322 34577788888899999999999999998
Q ss_pred HhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 175 TESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
.... ..+ ++..+|..+..+ .+.++..+++.++....
T Consensus 199 ~~~~--~rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 199 KELT--KRP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred Hhhc--cCc-hHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 8775 233 888888888755 78888888888887753
No 122
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.04 E-value=1.2 Score=32.43 Aligned_cols=64 Identities=17% Similarity=0.365 Sum_probs=48.0
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHHhc---ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 60 KAIFEKF---DEDSNGTIDHEELKKCFHKLE---IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 60 ~~~F~~~---D~~~~G~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
+.+|..| -..+...|+...|..+++..+ -.++...++.+|..+...+...|+|++|+.++..+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3445444 456677899999999999875 357888999999998776777899999999987543
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.52 E-value=0.43 Score=42.01 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHH
Q 026998 146 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKE 205 (229)
Q Consensus 146 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~e 205 (229)
+..-+.++|..+|.+++|.|+..+|...|..+...-.-+-+..+|+.++.+.+ ..+.++
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 33567789999999999999999999988887444455677788888888777 555544
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.81 E-value=0.53 Score=41.50 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=55.3
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHH
Q 026998 42 FNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEF 115 (229)
Q Consensus 42 f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF 115 (229)
|.++...+.......--+..+|+.+|.+.+|.|+..+|...|..+...-..+.+..+++.++.+++ ..+.++-
T Consensus 540 f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 540 FLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 333333333333334456899999999999999999999999888666666778899999999888 7777765
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.81 E-value=0.27 Score=39.69 Aligned_cols=67 Identities=25% Similarity=0.352 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
..+.+.=.|..+|+|.++.|...|++.+-.-+. -.....=...+++.+|.++|..|++.|++..+..
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 344566679999999999999999665433321 1233444678999999999999999999998864
No 126
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=89.32 E-value=13 Score=33.87 Aligned_cols=173 Identities=9% Similarity=0.053 Sum_probs=104.8
Q ss_pred CCchhHHHHHHHHHHHhcCC-CChHH---HHHHHHhCCCCcccHHHHHHHHHHhcCC-CCCcccHHHHHHHHHHh-----
Q 026998 17 PETKLEAKMVEAMQRRAAEG-TALKS---FNSIILKFPKIDDSLRNCKAIFEKFDED-SNGTIDHEELKKCFHKL----- 86 (229)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~-~~~~~---f~~~~~~~~~~~~~~~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~----- 86 (229)
++.++..++++.+..+.+-+ ..|.. |..+-..+-..--...-+.++|..++-. +...+.+.+...+|...
T Consensus 376 wdhp~~tel~q~lad~nnvKfsaYRtAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~ 455 (966)
T KOG4286|consen 376 WDHPKMTELYQSLADLNNVKFSAYRTAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLE 455 (966)
T ss_pred ccchHHHHHHHHHHHhcCeeehhHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHH
Confidence 56677777777766554322 11222 2222222222223445667888888854 55677777776666432
Q ss_pred ---cc--cCC---HHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhc
Q 026998 87 ---EI--KFT---EEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLD 158 (229)
Q Consensus 87 ---~~--~~~---~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D 158 (229)
|. +++ +--+.-++..||...+|.|...+|...+..++..- .++.++.+|+...
T Consensus 456 e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~-------------------leek~~ylF~~vA 516 (966)
T KOG4286|consen 456 QEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAH-------------------LEDKYRYLFKQVA 516 (966)
T ss_pred HHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhcch-------------------hHHHHHHHHHHHc
Confidence 21 111 12257788999999999999999988887776542 4578889999887
Q ss_pred CCCCccee------HHHHHHHHHhc-------CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 159 KNKDGYVS------RSEMTQAVTES-------GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 159 ~~~~G~I~------~~el~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
..+.-.+. ..++.++...+ |.++.+ -+..+|. ..++-..|++..|+..+.
T Consensus 517 ~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGgsNvep-svrsCF~--~v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 517 SSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SVRSCFQ--FVNNKPEIEAALFLDWMR 579 (966)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HHHHHHH--hcCCCCcchHHHHHHHhc
Confidence 66655431 12444444443 334444 4566776 345667899999987764
No 127
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=89.24 E-value=0.75 Score=44.25 Aligned_cols=60 Identities=18% Similarity=0.441 Sum_probs=51.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 61 AIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
.-|+.+|+++.|.|+..+|..++..- -..+..+++.++.....+.+...+|.+|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 34788999999999999999988653 4567788999998888899999999999987754
No 128
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.15 E-value=0.97 Score=39.43 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=64.7
Q ss_pred CcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 52 IDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.++....++.-|..+|.++.|.++......+++..+...+...+.+++...+.+.+|.+...+|..++....
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 355667888999999999999999999999999998889999999999999888899999999999988764
No 129
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.82 E-value=0.65 Score=28.81 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=37.8
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
.++..-|..++... +.+..+..+...|+.-..++|+.++|++.++.++|
T Consensus 8 ~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 8 WMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred cccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35555555555543 78888888888888778899999999999998877
No 130
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=88.81 E-value=1.5 Score=40.42 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=56.2
Q ss_pred HhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcH-----HHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 144 EATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTG-----RIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 144 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
+.....++..|..+++...|.++.+++..+|..+|...-. +++..++...|.+.-|.++|.+|...|.+
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 3455789999999999999999999999999999887653 34445555556666799999999999876
No 131
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.80 E-value=1.2 Score=35.77 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=15.3
Q ss_pred HHHHhcCCCCCCceehHHHHHHHH
Q 026998 188 KRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 188 ~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
.+++.+|.|.|..|+.++|++.-.
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhhhh
Confidence 456666666666777777666543
No 132
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=88.41 E-value=0.48 Score=32.24 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 181 STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 181 ~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
||++.++.+...+-.|..|++.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 79999999999999999999999999998874
No 133
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=86.49 E-value=0.73 Score=36.99 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhc---ccCCHH--H-----------HHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 60 KAIFEKFDEDSNGTIDHEELKKCFHKLE---IKFTEE--E-----------INDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~---~~~~~~--~-----------~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
+..|...|.|++|+++-.|+..++..-- +++..+ + -..+++.+|.+.|..|+.++|+......
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 4568888999999999999988775421 222111 1 3456788899999999999999987654
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=86.37 E-value=6.3 Score=35.23 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHHHhcc--cCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 70 SNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 70 ~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
+.|.+++.+|..+.+.+.. ..++.++..+|..+.. +.+.++.++|..++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhC
Confidence 4578888888877776642 2367788888888854 346788888888887654
No 135
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=86.23 E-value=4.4 Score=26.86 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCC---CCCCceehHHHHHHHHHHh
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDW---DKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~I~~~eF~~~~~~~~ 214 (229)
+..+..-|..+-+ +|+|+++.|-++. |++=+.+-+..+|..+.. -....|+.+|...+|.++.
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 3567778888876 8999999999887 776566666777776642 1257899999999998864
No 136
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=1.8 Score=40.35 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=111.6
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCc--hHH
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP--TAL 132 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~--~~~ 132 (229)
....+..+|+.+|..++|.|+..+-..++...| +....+-.++...+..+.|..+...|.+.++......... ...
T Consensus 9 ~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~ 86 (847)
T KOG0998|consen 9 GQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAK 86 (847)
T ss_pred ccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcc
Confidence 335688899999999999999999988887655 5666677788888888889999999988887755432111 000
Q ss_pred HhhhhcC--------------------------Ccc-hHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHH
Q 026998 133 RAKSRMG--------------------------MPK-LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRI 185 (229)
Q Consensus 133 ~~~~~~~--------------------------~~~-~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~ 185 (229)
..++... ... .......+..+|+.+.+. .|+++....+-+|...+ +..+.
T Consensus 87 ~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~ 163 (847)
T KOG0998|consen 87 KVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDV 163 (847)
T ss_pred ccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhh
Confidence 0000000 000 011123455678888775 89999999998887655 77888
Q ss_pred HHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 186 AIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 186 ~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
+..+....|.+.+|.++..+|.-.+...
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred hccccccccccccCCCChhhhhhhhhHH
Confidence 8899999999999999999999888764
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.16 E-value=2.7 Score=37.29 Aligned_cols=64 Identities=8% Similarity=0.056 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CC-CCcHHHHHHHHHhcCC-CCCCceehHHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFEEMDW-DKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~-~~~g~I~~~eF~~~~~~~ 213 (229)
..+..+|..|.. ++.++.++|..+|... +. ..+.+.+..++..+.. ...+.++++.|..++.+.
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 588899998864 4799999999999987 43 3577888899988642 346779999999999874
No 138
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.28 E-value=1.5 Score=36.25 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHH-HhcCCCCCCceehHHHHHHH
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRF-EEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~-~~~d~~~~g~I~~~eF~~~~ 210 (229)
.+.++++|+.+|+.++|+|+-+-+..++...+..+++...-.++ ..+|+..-|.|-..+|+.-+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 57899999999999999999999999999887555554444444 34677777788777776554
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=82.90 E-value=4.9 Score=35.65 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CC-CCcHHHHHHHHHhcCCC----CCCceehHHHHHHHHHHh
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFEEMDWD----KNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~~~~~~ 214 (229)
.++..+|..+-. ++.++.++|..+|... +. ..+.+.+..++..+... ..|.++++.|..++.+..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~ 94 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDT 94 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcc
Confidence 688899998864 3689999999999887 43 34567788899888643 356899999999998753
No 140
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=82.02 E-value=6.8 Score=24.12 Aligned_cols=49 Identities=6% Similarity=-0.075 Sum_probs=32.8
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
++.+++..+++..|..+|++++..+++.-+..+--..+-..+..++..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 3445788888888888888888888887665444455555555555543
No 141
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=81.85 E-value=8.9 Score=24.72 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=40.2
Q ss_pred cceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 163 GYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 163 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
..||.+||.+..+..|.++|+..++.++..+-.+.-...+-++=.+.+....
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999988666555555555555555443
No 142
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=80.83 E-value=9.1 Score=25.81 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=43.9
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHH
Q 026998 151 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 151 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 209 (229)
..+|-.++.-++-..+..+++.+|...|..+.++.+..++..+. |+ +.+|.+..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 44677777888888999999999999999999999999999886 33 55555543
No 143
>PLN02230 phosphoinositide phospholipase C 4
Probab=80.68 E-value=6.4 Score=35.16 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcC-C--CCcHHHHHHHHHhcC-------CCCCCceehHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESG-E--GSTGRIAIKRFEEMD-------WDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~-~--~~~~~~~~~~~~~~d-------~~~~g~I~~~eF~~~~~~ 212 (229)
..+..+|..|..++ +.++.++|..+|.... . ..+.+.+..++..+- .-..+.++++.|..++.+
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 68999999996444 8999999999999873 2 346677777776542 223456999999999987
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=79.01 E-value=2.1 Score=30.42 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=30.6
Q ss_pred CCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcC-------CCCCCceehHHHHHHHHHHhcCC
Q 026998 161 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD-------WDKNGMVNFKEFLFAFTRWCGVG 217 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~g~I~~~eF~~~~~~~~~~~ 217 (229)
.-+.||+.||.++=+-.. -+...++.+++.|. .+..+.|+|+.|..+|..+....
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d 65 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD 65 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC
Confidence 357788888887543221 13335666666663 23466899999999999987543
No 145
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=78.07 E-value=5.2 Score=24.15 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=30.2
Q ss_pred HhhcCCCCcceeHHHHHHHHHhc----------CCCCcHHHHHHHHHhc
Q 026998 155 VFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEM 193 (229)
Q Consensus 155 ~~~D~~~~G~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~~ 193 (229)
+.||+..+.+||.+++.++...- |..+|...+-+++-.-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 46899999999999999998753 6667777666665543
No 146
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=77.79 E-value=9.4 Score=25.67 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=41.5
Q ss_pred HhhcCCCCcceeHHHHHHHHHhc----------CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 155 VFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 155 ~~~D~~~~G~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
+.||+..+.+||.+++.++...- |..+|...+-.++-.....+.+.++- +|++.+.++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~-~~L~qlIr~ 77 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLST-DFLTQIIRF 77 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHH
Confidence 46899999999999999988753 67788888888877776555555543 444444443
No 147
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=75.95 E-value=2.6 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 90 FTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 90 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
+++++++.++..+..+..|.+.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67889999999999999999999999987763
No 148
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=75.44 E-value=4.6 Score=35.59 Aligned_cols=65 Identities=29% Similarity=0.378 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccC----CHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHc
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKF----TEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLL 125 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 125 (229)
-.+.+..+|..+|.+++|.++..|+..+++..+..+ ...+.- -....|++++.-|+..+..+...
T Consensus 313 ~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHHHHhhc
Confidence 457889999999999999999999999998875333 111111 12367899999998888766543
No 149
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.65 E-value=23 Score=25.17 Aligned_cols=34 Identities=3% Similarity=-0.046 Sum_probs=25.1
Q ss_pred CcceeHHHHHHHHHhc-CCCCcHHHHHHHHHhcCC
Q 026998 162 DGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDW 195 (229)
Q Consensus 162 ~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~ 195 (229)
.+.|+.+-|+.+|+.. ...++.+-+..+|..|-.
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 3589999999999998 777899999999999864
No 150
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=73.15 E-value=2.7 Score=33.15 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=22.0
Q ss_pred CCCchhhhhhccCCC------chhHHHHHHHHHHHhc
Q 026998 4 IVGKPESATSTWMPE------TKLEAKMVEAMQRRAA 34 (229)
Q Consensus 4 ~~s~~~~l~~~~~~~------~~~~~~~~~~l~~~~~ 34 (229)
.+|+.++|+|||+.. ....++++..+.++..
T Consensus 258 RIta~EAL~HpWi~~r~~~As~~H~~dtvd~lrkfNa 294 (355)
T KOG0033|consen 258 RITADEALKHPWICNRERVASAIHRQDTVDCLKKFNA 294 (355)
T ss_pred hccHHHHhCCchhcchHHHHHHhhhHHHHHHHHHhhH
Confidence 489999999999943 3344566677766653
No 151
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=71.94 E-value=14 Score=22.94 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=38.4
Q ss_pred CCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHH
Q 026998 106 KDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRI 185 (229)
Q Consensus 106 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~ 185 (229)
.+..|+|......+...... .....+...|+.=..+.|++++|.+.++.. +.+..
T Consensus 5 ~sp~~~F~~L~~~l~~~l~~----------------------~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I---VGD~l 59 (70)
T PF12174_consen 5 TSPWMPFPMLFSALSKHLPP----------------------SKMDLLQKHYEEFKKKKISREEFVRKLRQI---VGDQL 59 (70)
T ss_pred CCCcccHHHHHHHHHHHCCH----------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHH
Confidence 35567777766666654321 334444444544467899999999999877 33555
Q ss_pred HHHHHHh
Q 026998 186 AIKRFEE 192 (229)
Q Consensus 186 ~~~~~~~ 192 (229)
+..++..
T Consensus 60 L~s~I~~ 66 (70)
T PF12174_consen 60 LRSAIKS 66 (70)
T ss_pred HHHHHHH
Confidence 5555443
No 152
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=70.05 E-value=29 Score=25.49 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhc
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM 193 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 193 (229)
...+..+++.+-..+...++..+|-+.|.- |..+|++++...+..+
T Consensus 84 ~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV-GV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 84 NLQLDAALKYLKSNPSEPIDVAEFEKACGV-GVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHHGG-G--HHHHHHTTTT-T----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHcCC-CeEECHHHHHHHHHHH
Confidence 367788888886666667999998877643 7778999999887765
No 153
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=69.48 E-value=16 Score=25.00 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHH
Q 026998 152 DAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 208 (229)
Q Consensus 152 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 208 (229)
.+|-..-.-|+..+|.+++.++|...|..+.+..+..+++.+.. .++++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34555556677789999999999999999999999999999862 45666665
No 154
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=67.79 E-value=35 Score=23.09 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHH
Q 026998 60 KAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVL 118 (229)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 118 (229)
...|..+...++-..+..++..+|..+|.....+.++.++..+. |+ +.++.++.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 34567777788889999999999999999999999999998872 33 56665543
No 155
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=67.26 E-value=37 Score=23.10 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 153 AFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 153 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
+|-.....|+..+|.+++..+|+..|..+.+..+..+++.+.. .++++.+..-..-
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~k 61 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKEK 61 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHhh
Confidence 4555556677789999999999999999999999999998862 5677777765553
No 156
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.17 E-value=32 Score=22.46 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh-------cc----cCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKL-------EI----KFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-------~~----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
+.++-+|+.+ .|++|.++...|..+|+.+ |. ...+..+...|... .....|+..+|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4577889888 5889999999998888653 22 22556677777664 35677999999999874
No 157
>PLN02223 phosphoinositide phospholipase C
Probab=66.18 E-value=18 Score=31.84 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHH---Hhc-C-CCCcHHHHHHHHHhcCCC--------CCCceehHHHHHHHHH
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAV---TES-G-EGSTGRIAIKRFEEMDWD--------KNGMVNFKEFLFAFTR 212 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~I~~~eF~~~~~~ 212 (229)
+.++.+|..|- .+.|.++.+.|.++| ... | ...+.++++.++..+-.. ..+.++.+.|..++.+
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 67889999994 678999999999999 444 3 357778888888765322 2356999999999987
No 158
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=65.06 E-value=37 Score=22.35 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHHhc--ccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 71 NGTIDHEELKKCFHKLE--IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 71 ~G~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
||.++..|...+-.-+. +.++..+...++..+........++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 78899888766554432 3567777788877776666677888888887764
No 159
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.74 E-value=6.7 Score=32.54 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCH-HHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTE-EEINDLFEACDINKDMGMKFNEFIVLLC 120 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 120 (229)
......+++.|..+|+.++|+|+.+-+..++...+...++ ..+..+-..+++..-|.|-..+|+..+.
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 3446789999999999999999999999999998855554 4455554556666666666666655543
No 160
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=63.08 E-value=49 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTE 176 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 176 (229)
-.+...+..||++++|.|+.-+++.++..
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 35566788999999999999999988764
No 161
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=63.05 E-value=11 Score=25.01 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=29.8
Q ss_pred CcceeHHHHHHHHHhc--CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 162 DGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 162 ~G~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
||.++..|...+-.-+ ...+++.+...++..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5667776665554432 12466666676666665554555666666666554
No 162
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=62.35 E-value=14 Score=33.08 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=57.1
Q ss_pred CCCchhhhhhccCCCchhH-HHHHHHHHHHhcCCCChHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 026998 4 IVGKPESATSTWMPETKLE-AKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKC 82 (229)
Q Consensus 4 ~~s~~~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~ 82 (229)
.+|+.++++|||+...... ....+.+.... .........+ ..+.+......-....+|-.+..+++.+
T Consensus 441 R~ta~e~L~Hpff~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 509 (566)
T PLN03225 441 RISAKAALAHPYFDREGLLGLSVMQNLRLQL-FRATQQDYGE----------AAAWVVFLMAKSGTEKEGGFTEAQLQEL 509 (566)
T ss_pred CCCHHHHhCCcCcCCCCcccccccccccccc-chhhHHHHHH----------HHHHHHHHHHhcCCCCCCCccHHHHHHh
Confidence 4789999999999665442 11111110000 0000001111 1223445555666778888999999887
Q ss_pred HHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 026998 83 FHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLL 119 (229)
Q Consensus 83 l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 119 (229)
...-........-..+....+....|..++.+++.-.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (566)
T PLN03225 510 REKEPKKKGSAQRNALASALRLQRKGVKTVARTVDEI 546 (566)
T ss_pred hhhcCcchhhhhhhhHHHHHhhhhhhhhhhhhhhhcc
Confidence 6653111111222246677777788888888877643
No 163
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=59.33 E-value=67 Score=27.95 Aligned_cols=100 Identities=13% Similarity=0.216 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhc---CC-----CCCCCccHHHHHHHHHHHHHccCCchH
Q 026998 60 KAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEAC---DI-----NKDMGMKFNEFIVLLCLVYLLKDDPTA 131 (229)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~g~i~~~eF~~~~~~~~~~~~~~~~ 131 (229)
.-+|..+....++.+++--|..+|+..|+.-++..+..++..+ +. ...+.++.+.|..++...... .
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~l-----v 163 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVL-----V 163 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhH-----H
Confidence 3467777766689999999999999999988887777777554 22 123568888888877643322 1
Q ss_pred HHh-hhhcCCcchHhhHHHHHHHHHhhcCCCCcc
Q 026998 132 LRA-KSRMGMPKLEATFETLVDAFVFLDKNKDGY 164 (229)
Q Consensus 132 ~~~-~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~ 164 (229)
... ...+-++.....-..+..+|...-.-+-|.
T Consensus 164 SqALrkqmVIPdw~~Fts~I~tIFEscke~seG~ 197 (622)
T KOG0506|consen 164 SQALRKQMVIPDWEEFTSHIDTIFESCKESSEGK 197 (622)
T ss_pred HHHHhcCccCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 111 112223444444566777777665544443
No 164
>PLN02222 phosphoinositide phospholipase C 2
Probab=58.40 E-value=49 Score=29.69 Aligned_cols=65 Identities=25% Similarity=0.443 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcc--cCCHHHHHHHHHhcCC-CCCCCccHHHHHHHHHH
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDI-NKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~~~~ 121 (229)
...++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|...+..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44588999999864 479999999999988753 3466778888877532 23567999999998875
No 165
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=58.10 E-value=31 Score=19.11 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=22.0
Q ss_pred HHHHHHHHhhc-C-CCCcceeHHHHHHHHHhc
Q 026998 148 ETLVDAFVFLD-K-NKDGYVSRSEMTQAVTES 177 (229)
Q Consensus 148 ~~~~~~F~~~D-~-~~~G~I~~~el~~~l~~~ 177 (229)
..+..+|..|. + ....+++..||+.++...
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 46677888775 2 335689999999998764
No 166
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=57.84 E-value=26 Score=21.68 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhc----CCCCcHHHHHHHHHhcC
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES----GEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~----~~~~~~~~~~~~~~~~d 194 (229)
..+..+...++..-.--+-..+|+.++..+ |...+++.+..+|..|.
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~FC 73 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNFC 73 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhC
Confidence 566667766665444456667888888777 87888999999998763
No 167
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=56.58 E-value=17 Score=22.46 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCC-------CCCCccHHHHHHH
Q 026998 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDIN-------KDMGMKFNEFIVL 118 (229)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~g~i~~~eF~~~ 118 (229)
.+++...|+.+ .++.+.||..+|+..|.. +.++-+...+..- ..|..+|..|+..
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 45688999999 677899999999986532 1223344333221 1266888887653
No 168
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=55.27 E-value=47 Score=20.41 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=33.2
Q ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 74 IDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 74 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
++..++..++...|..++..++..+++.-+..+--.++-..+..++..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 4456788888888888898888888877554444445555555555443
No 169
>PLN02228 Phosphoinositide phospholipase C
Probab=54.88 E-value=82 Score=28.26 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcc--cCCHHHHHHHHHhcCCC----CCCCccHHHHHHHHHH
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDIN----KDMGMKFNEFIVLLCL 121 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~~~~ 121 (229)
+...++..+|..+-.+ +.++.++|..+|..... ..+.+.+..++..+... ..+.++.+.|...+..
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 3567788999888643 58999999999988752 24566778888877543 2467999999998865
No 170
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=54.84 E-value=35 Score=28.15 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=50.0
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhcCCC
Q 026998 153 AFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGE 218 (229)
Q Consensus 153 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 218 (229)
...++|+.+.|.++.--.+-+|..+.-.--.+.+..+|..+. +.+|.+.+..|.+++...+....
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT 179 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPT 179 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCc
Confidence 446899999999999999888887732223457778888776 77898888888888887765544
No 171
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.06 E-value=28 Score=31.70 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhc--------CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTES--------GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~--------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
.+.++..|..+|. ++|.++.+++..++... ....+.+....++...+.+..|.+.+.++...+..
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 3788889999998 89999999999998766 12345566677888888888888888877777664
No 172
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.01 E-value=1.2e+02 Score=24.24 Aligned_cols=147 Identities=13% Similarity=0.071 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHH
Q 026998 55 SLRNCKAIFEKF-DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (229)
Q Consensus 55 ~~~~~~~~F~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 133 (229)
....+..+|..+ |++.+..|-+.-+..+...+|..+..-.+--+.=.+....-+..+..+|+..+..+.... .....
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS--~d~lq 139 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDS--IDKLQ 139 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCc--HHHHH
Confidence 445667777666 666667899999999999999777653322222233344456788888888666543221 00000
Q ss_pred hhhhcC---CcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehH
Q 026998 134 AKSRMG---MPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFK 204 (229)
Q Consensus 134 ~~~~~~---~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ 204 (229)
..-... -.......+..+.+|..-+--+-..|+.+.-+.+++.++ .-+...+...++..-..+...|+.+
T Consensus 140 ~~l~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~-~~~~pll~~w~~FL~~~~~~~~~KD 212 (260)
T KOG3077|consen 140 QRLDFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF-GQTPPLLDQWIQFLKDSPNRAISKD 212 (260)
T ss_pred HHHHHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh-CCCCchHHHHHHHHHhCcCcccCcc
Confidence 000000 012222334455566654444556788888888887774 3344455555444443444444433
No 173
>PHA02335 hypothetical protein
Probab=52.92 E-value=68 Score=21.58 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCc--ceeHHHHHHHHHhcCCCCcHH
Q 026998 107 DMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDG--YVSRSEMTQAVTESGEGSTGR 184 (229)
Q Consensus 107 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G--~I~~~el~~~l~~~~~~~~~~ 184 (229)
-..|++++|..-+..+ ..+.+.|+.|...|+- .+=...+..++..+|.-.+
T Consensus 22 p~sVt~ddf~~DlkRi-------------------------~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~eAa~-- 74 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF-------------------------KYIKRLFKRYLNTGELKTHLILNHIIILYNVFGEAAT-- 74 (118)
T ss_pred cccccHHHHHHHHHHH-------------------------HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhhhhh--
Confidence 4569999999888765 5677888888765543 2334455555555442222
Q ss_pred HHHHHHHhcCCCCCCceehHHHHHHHHHHhcCCCCCCcc
Q 026998 185 IAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGENEDEE 223 (229)
Q Consensus 185 ~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 223 (229)
--+|-..+ ..-.=-...|+-++..|..+...|.++
T Consensus 75 --plLfyKte--~~~wp~iKafllfLn~~p~~~n~e~D~ 109 (118)
T PHA02335 75 --PLLFYKLE--AEYWPAIKSFLLFLNRLPIFPNEEVDQ 109 (118)
T ss_pred --hhhHHhhh--HHHHHHHHHHHHHHHhcCCCCCCCccH
Confidence 22222222 222223345666666665544444443
No 174
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=52.91 E-value=96 Score=29.14 Aligned_cols=140 Identities=12% Similarity=0.167 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHH-HHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHh
Q 026998 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEE-INDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (229)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 134 (229)
...++..+..+|...-..|+..+++.+|......++... +..-+-.. .-..+-++|.+|-.+........
T Consensus 143 ~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~-------- 213 (1267)
T KOG1264|consen 143 ERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQ-------- 213 (1267)
T ss_pred HHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhcc--------
Confidence 345677788888777778999999999988877766533 22333332 23456799999987776543221
Q ss_pred hhhcCCcchHhhHHHHHHHHH--hhcCCCCcceeHHHHHHHHHhcCCCC---cHHHHHHHHHhcC-----CCCCCceehH
Q 026998 135 KSRMGMPKLEATFETLVDAFV--FLDKNKDGYVSRSEMTQAVTESGEGS---TGRIAIKRFEEMD-----WDKNGMVNFK 204 (229)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~F~--~~D~~~~G~I~~~el~~~l~~~~~~~---~~~~~~~~~~~~d-----~~~~g~I~~~ 204 (229)
...........|- .-+...--.++..+|.++|....... ...-++.++..|- ......+.+.
T Consensus 214 --------~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~ 285 (1267)
T KOG1264|consen 214 --------QKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVD 285 (1267)
T ss_pred --------chhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHH
Confidence 0000011111121 11222224689999999997652111 1223444444442 2345688999
Q ss_pred HHHHHHHH
Q 026998 205 EFLFAFTR 212 (229)
Q Consensus 205 eF~~~~~~ 212 (229)
||+.++-+
T Consensus 286 EFv~fLFS 293 (1267)
T KOG1264|consen 286 EFVTFLFS 293 (1267)
T ss_pred HHHHHHhh
Confidence 99998854
No 175
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=52.75 E-value=21 Score=16.37 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=6.1
Q ss_pred CCCCCceehHHHH
Q 026998 195 WDKNGMVNFKEFL 207 (229)
Q Consensus 195 ~~~~g~I~~~eF~ 207 (229)
.|+||.|+--++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3445555544443
No 176
>PLN02230 phosphoinositide phospholipase C 4
Probab=52.67 E-value=87 Score=28.27 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcc---cCCHHHHHHHHHhcCC-------CCCCCccHHHHHHHHHH
Q 026998 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI---KFTEEEINDLFEACDI-------NKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~-------~~~g~i~~~eF~~~~~~ 121 (229)
+...++..+|..+..++ +.++.++|..+|..... ..+...+..++..+-. -+.+.++++.|...+..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35568999999996554 79999999999998752 2355666666654311 12356999999998865
No 177
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=52.30 E-value=46 Score=22.78 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHH
Q 026998 154 FVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 208 (229)
Q Consensus 154 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 208 (229)
|-..-.-++-.+|.+++.++|...|..+....+..+++.+.. .++++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 333334566779999999999999999999999999998862 45666664
No 178
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=51.99 E-value=77 Score=29.30 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhc
Q 026998 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRM 138 (229)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~ 138 (229)
+.-+++.||+.++|.|..-+|+..+-.+.-....+....+|+....++...+ -..|..++...... |.......-+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqi---pr~lGE~aAf 547 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQI---PRQLGEVAAF 547 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHH---HHHHhHHHhh
Confidence 4557899999999999999999888777544555556689988865554443 55666666655443 2222222333
Q ss_pred CCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 026998 139 GMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVT 175 (229)
Q Consensus 139 ~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~ 175 (229)
+..++ +..++..|.. .++.-.|+...|..++.
T Consensus 548 GgsNv---epsvrsCF~~--v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 548 GGSNI---EPSVRSCFQF--VNNKPEIEAALFLDWMR 579 (966)
T ss_pred cCCCC---ChHHHHHHHh--cCCCCcchHHHHHHHhc
Confidence 33332 2456777772 34555677777776653
No 179
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=51.82 E-value=63 Score=20.87 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 72 GTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 72 G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
..||..||...-+..+..++.+.+..++..+....-.-.+-.+=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999888765544444444444444433
No 180
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=51.64 E-value=20 Score=25.76 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=39.4
Q ss_pred eeHHHHHHHHHhc----CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 165 VSRSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 165 I~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
++-..+-.+|+.+ |..+|..+....|..+-.-.-+.|+|++|...+..+.
T Consensus 34 m~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 34 MNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred cccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 6667788888888 5567888888888888777778999999977776544
No 181
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=51.38 E-value=19 Score=22.58 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.4
Q ss_pred CCcceeHHHHHHHHHh
Q 026998 161 KDGYVSRSEMTQAVTE 176 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~ 176 (229)
..|+++.+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5789999999998865
No 182
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=50.80 E-value=59 Score=21.94 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=36.5
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
||.+++.++|...|..++...+..+++.+. ..++++.+.....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999999999999975 2466777766654
No 183
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=50.14 E-value=9.7 Score=32.16 Aligned_cols=16 Identities=6% Similarity=0.322 Sum_probs=13.7
Q ss_pred CCCchhhhhhccCCCc
Q 026998 4 IVGKPESATSTWMPET 19 (229)
Q Consensus 4 ~~s~~~~l~~~~~~~~ 19 (229)
.+++.++++|||+...
T Consensus 284 R~ta~~~L~HpWi~~~ 299 (382)
T KOG0032|consen 284 RLTAAQALQHPWIKSI 299 (382)
T ss_pred CCCHHHHhcCccccCC
Confidence 5899999999999654
No 184
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=49.23 E-value=77 Score=21.12 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCC---CCCCCccHHHHHHHHHHH
Q 026998 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDI---NKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~g~i~~~eF~~~~~~~ 122 (229)
.+..-|..+-. +|.|+...|..++ |+.-+.+.+.++|..+.. -....|+.+|+..++..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 35556666665 8999999999875 666677777777765522 224679999988887755
No 185
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=48.64 E-value=66 Score=21.76 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=36.2
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
.||.+.+..+|...|..+.+..+..+++.+. .++.++.+....
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~~a~ 58 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIKKAA 58 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHhcc
Confidence 7999999999999999999999999999875 356677765443
No 186
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=47.10 E-value=8.6 Score=29.02 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=40.5
Q ss_pred HHHhhcC-CCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 153 AFVFLDK-NKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 153 ~F~~~D~-~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
.|-.+|+ --+|++|..||.-+-..+ ---+.-+..+|...|.|+||.|+++|+...+.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3555664 467999998887543322 11235667899999999999999999877653
No 187
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=46.53 E-value=1.5e+02 Score=23.69 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=56.3
Q ss_pred CCCcccHHHHHHHHHHhc--ccCCHHH---HHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchH
Q 026998 70 SNGTIDHEELKKCFHKLE--IKFTEEE---INDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLE 144 (229)
Q Consensus 70 ~~G~i~~~e~~~~l~~~~--~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (229)
-||.++..|+. +.+.+- +.++.+. +..+|..- .....++.+|+..+...+.. ...
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~----------------r~~ 127 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGG----------------RFD 127 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcc----------------cHH
Confidence 48999999988 334431 3455555 55555543 34458899998888765421 111
Q ss_pred hhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCCCcHHHHHHHHHh
Q 026998 145 ATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEE 192 (229)
Q Consensus 145 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~ 192 (229)
....-+...|..-= -||.++..|-.-+..-. ...++..++..+...
T Consensus 128 l~~~lL~~l~~vA~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 128 LLRMFLEIQIQAAF--ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11111233344322 35778887744433322 334788777777665
No 188
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=46.43 E-value=76 Score=26.16 Aligned_cols=138 Identities=11% Similarity=0.122 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchH
Q 026998 54 DSLRNCKAIFEKF--DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTA 131 (229)
Q Consensus 54 ~~~~~~~~~F~~~--D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 131 (229)
...++|..+...+ |.|+.-.+--++|......+....-..-++-+.+.|-..-+|.+=|.|...-+...
T Consensus 38 ~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~--------- 108 (357)
T PLN02508 38 LDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT--------- 108 (357)
T ss_pred hhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC---------
Confidence 3445566666554 77888889999998766554333334456777777777788999888866544321
Q ss_pred HHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHH-----HHHH----hcCCCCCCcee
Q 026998 132 LRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAI-----KRFE----EMDWDKNGMVN 202 (229)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~-----~~~~----~~d~~~~g~I~ 202 (229)
-..+.++|..+..|....-. =+-++|..+|..++-.-+. .+|+ .+.+.-+-+|.
T Consensus 109 ---------------nP~lae~F~lMaRDEARHAG--FlNkam~Df~l~lDLgfLtk~rkYTfF~PkfIfYAtYLSEKIG 171 (357)
T PLN02508 109 ---------------NPVVAEIFTLMSRDEARHAG--FLNKALSDFNLALDLGFLTKNRKYTFFKPKFIFYATYLSEKIG 171 (357)
T ss_pred ---------------ChHHHHHHHHhCchhHHHHh--HHHHHHHHcCccccchhhcccCceeeeCcceeehhhHhhhhhh
Confidence 14677788877665432211 1344566665443211111 1111 12233345666
Q ss_pred hHHHHHHHHHHhcCC
Q 026998 203 FKEFLFAFTRWCGVG 217 (229)
Q Consensus 203 ~~eF~~~~~~~~~~~ 217 (229)
|--|+...++.-..+
T Consensus 172 YwRYItIyRHLe~~P 186 (357)
T PLN02508 172 YWRYITIYRHLQANP 186 (357)
T ss_pred hhhHhHHHHHHHhCc
Confidence 666666666654333
No 189
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=45.73 E-value=22 Score=22.60 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCC
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDK 197 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 197 (229)
..++.+...- + ..|+||.+++..+|... .+++..+..++..+...+
T Consensus 7 ~~i~~Li~~g-K-~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 7 EAIKKLIEKG-K-KKGYLTYDEINDALPED--DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHHHHHHHHH-H-HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH-h-hcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHHHCC
Confidence 3444444433 2 47899999999999854 388999999999876443
No 190
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=44.03 E-value=39 Score=29.27 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc
Q 026998 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE 87 (229)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 87 (229)
...+..+| .+-....+.-|.+||...+....
T Consensus 288 ~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 288 EDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 34556666 55555567788888888877654
No 191
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.79 E-value=37 Score=24.22 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHhhcCCCCcceeHHHHHHHHHhc--CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 152 DAFVFLDKNKDGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 152 ~~F~~~D~~~~G~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
-.|..... ||.++..|...+..-+ ...++.+.+..++.....-+.-.|+|-.|...+.+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57888765 5678887765544433 45689999999998877666777888888887774
No 192
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.51 E-value=1.1e+02 Score=22.44 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=38.1
Q ss_pred HhhcCCCCcceeHHHHHHHHHhc----------CCCCcHHHHHHHHHh-cCCCCCCceehHHHHHHHHHHhc
Q 026998 155 VFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEE-MDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 155 ~~~D~~~~G~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~-~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
+.|++--+-+||.+++..++++- |..+|...+-.++=. -.+.+...+. -.|++.+.++.|
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~llp-i~fLrQlI~fYG 89 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQIIFEEENKGGQNLLP-ISFLRQLISFYG 89 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHHHHHHhccCCCcccc-HHHHHHHHHHHh
Confidence 45788888899999999999763 555666655554433 3333333222 357777766655
No 193
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=43.30 E-value=94 Score=21.25 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q 026998 61 AIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIV 117 (229)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 117 (229)
..|..+-..++..+|..++..+|...|..+....+..+++.+. ..+..+.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 4455555667778999999999999999999988888888873 256666655
No 194
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=42.47 E-value=55 Score=22.77 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCCCcHHHHHHHHHhcCCC
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDWD 196 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~ 196 (229)
.+.+..+|++|- ++.|+.+.+..++... |..+|...+.-+...+=.|
T Consensus 36 ~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 36 LDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 367778888886 4679999999988877 6789999888888776433
No 195
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=41.99 E-value=95 Score=20.07 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 026998 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (229)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 123 (229)
.-.|.-.+|...|..........+...+-..+|.-.++.|+--||-.+.+..+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 35799999999999886555556667777888999999999999998887654
No 196
>PF15412 Nse4-Nse3_bdg: Binding domain of Nse4/EID3 to Nse3-MAGE
Probab=40.81 E-value=37 Score=19.87 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.0
Q ss_pred CCceehHHHHHHHHHHhcCCCC
Q 026998 198 NGMVNFKEFLFAFTRWCGVGEN 219 (229)
Q Consensus 198 ~g~I~~~eF~~~~~~~~~~~~~ 219 (229)
.+.++-++|+..+..+++...-
T Consensus 23 ~~~fd~deFv~~l~~fm~~~~~ 44 (56)
T PF15412_consen 23 GSGFDVDEFVSKLKTFMGGNRF 44 (56)
T ss_pred CCccCHHHHHHHHHHHhCcccC
Confidence 6678999999999999887443
No 197
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=40.78 E-value=97 Score=20.27 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=6.2
Q ss_pred CcceeHHHHHHH
Q 026998 162 DGYVSRSEMTQA 173 (229)
Q Consensus 162 ~G~I~~~el~~~ 173 (229)
||.++..|...+
T Consensus 13 DG~v~~~E~~~i 24 (106)
T cd07316 13 DGRVSEAEIQAA 24 (106)
T ss_pred cCCcCHHHHHHH
Confidence 455665554443
No 198
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=40.69 E-value=66 Score=19.53 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHhcccCCHHHHHHHHHhc
Q 026998 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (229)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (229)
+=.|+.+.++..+...|..+++..++.+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 33688999999999999999999999888765
No 199
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=40.47 E-value=8.1 Score=29.14 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 026998 146 TFETLVDAFVFLDKNKDGYVSRSEMTQAV 174 (229)
Q Consensus 146 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l 174 (229)
.+..+...|...|.|++|+|+.+|....+
T Consensus 220 me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 220 MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 44788889999999999999988877654
No 200
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=40.00 E-value=42 Score=23.85 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCcceeHHHHHHHHHhc---------CCCCcHHHHHHHHHhcCCCCCC-ceehHHHHHH
Q 026998 160 NKDGYVSRSEMTQAVTES---------GEGSTGRIAIKRFEEMDWDKNG-MVNFKEFLFA 209 (229)
Q Consensus 160 ~~~G~I~~~el~~~l~~~---------~~~~~~~~~~~~~~~~d~~~~g-~I~~~eF~~~ 209 (229)
=|+-.||.+||.+++..- -+.++++++..+.+.+.....+ .+++.|-++.
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 377889999999998765 2246899999999999876655 4888887764
No 201
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.51 E-value=27 Score=35.23 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCcccHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhccc----CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 51 KIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK----FTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~----~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
......+++.++|..+|++..|.|....+...++.+... ..... +.+--.+....++.|++.+-+-++.+.
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 446678899999999999999999999999999987422 22222 223333445578899999877777654
No 202
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=38.39 E-value=2.2e+02 Score=24.27 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHH
Q 026998 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETL 150 (229)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (229)
.-.+....|.++|.......+--++..+-..+|...++.|+.-||-.+.+.+. .+..+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq----------------------Pw~tl 245 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ----------------------PWKTL 245 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc----------------------cHHHH
Confidence 44778888999888875444444566677778888899999888877776553 12344
Q ss_pred HHHHHhhcCCCCcc---eeHHHHHHHHHhc
Q 026998 151 VDAFVFLDKNKDGY---VSRSEMTQAVTES 177 (229)
Q Consensus 151 ~~~F~~~D~~~~G~---I~~~el~~~l~~~ 177 (229)
.+-++.+..-+-|+ +|.+|+++-|.++
T Consensus 246 lkNWq~LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 246 LKNWQTLAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred HHhhhhhhccCCceeEEeeHHHHHHHHHHH
Confidence 44555566666664 6777887777665
No 203
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=38.11 E-value=1.4e+02 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 026998 59 CKAIFEKFDEDSNGTIDHEELKKCFHK 85 (229)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~ 85 (229)
+.=++..||++++|.|+.-.++.++..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 344566677777777777777766543
No 204
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=38.00 E-value=98 Score=25.52 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 55 SLRNCKAIFEKF--DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 55 ~~~~~~~~F~~~--D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
..++|..+...+ |.|+.-.+--+||......+....-..-++-+.+.|-.+=+|.+=|.|...-+... .
T Consensus 39 ~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~-----n---- 109 (351)
T CHL00185 39 NIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK-----N---- 109 (351)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC-----C----
Confidence 445566666554 77888899999998866555333344456667777777778888888765544321 1
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHH-----HHHH----hcCCCCCCceeh
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAI-----KRFE----EMDWDKNGMVNF 203 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~-----~~~~----~~d~~~~g~I~~ 203 (229)
..+.++|..+..|....-. =+-++|..+|..++-.-+. .+|+ .+.+.-+-+|.|
T Consensus 110 ---------------P~lae~F~lMaRDEARHAG--FlNkam~df~l~lDLgfLtk~rkYTfF~PkfI~YAtYLSEKIGY 172 (351)
T CHL00185 110 ---------------PLLAEGFLLMSRDEARHAG--FLNKAMSDFNLSLDLGFLTKSRKYTFFSPKFIFYATYLSEKIGY 172 (351)
T ss_pred ---------------cHHHHHHHHHhhhhHHHhh--hHHHHHHHcCccccchhhccCCceeeecccceehhhHHHhhhhh
Confidence 3567778777655332111 1334566665443211111 0110 122333456666
Q ss_pred HHHHHHHHHHhcCC
Q 026998 204 KEFLFAFTRWCGVG 217 (229)
Q Consensus 204 ~eF~~~~~~~~~~~ 217 (229)
--|+...++.-..+
T Consensus 173 wRYItIyRHLe~~P 186 (351)
T CHL00185 173 WRYITIYRHLEKNP 186 (351)
T ss_pred hHHhHHHHHHHhCc
Confidence 66666666654333
No 205
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=37.83 E-value=52 Score=19.73 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=21.0
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHH
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRF 190 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~ 190 (229)
.|+.++|..+|+.....++.+++..+-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 588899999999887778888887653
No 206
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=37.37 E-value=73 Score=23.93 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=25.1
Q ss_pred cCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcC
Q 026998 158 DKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 158 D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 194 (229)
..+.+|++..++|.+.+..-+..+|.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4577899999999999988777789999999998744
No 207
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=37.35 E-value=1e+02 Score=25.53 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 55 SLRNCKAIFEKF--DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 55 ~~~~~~~~F~~~--D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
..++|..+...+ |.|+.-++--++|......+....-...++-+.+.|-..=+|.+=|.|...-+... .
T Consensus 43 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----n---- 113 (355)
T PRK13654 43 NREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR-----N---- 113 (355)
T ss_pred hHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-----C----
Confidence 445666666555 77888899999998866555444444456777777777778888888765544321 1
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCC---cceeHHHHHHHHHhcCCCCcHHHHH-----HHHH----hcCCCCCCc
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKD---GYVSRSEMTQAVTESGEGSTGRIAI-----KRFE----EMDWDKNGM 200 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~---G~I~~~el~~~l~~~~~~~~~~~~~-----~~~~----~~d~~~~g~ 200 (229)
..+.++|..+..|.. |.| -++|..+|..++-.-+. .+|. .+.+.-+-+
T Consensus 114 ---------------P~lae~F~lMaRDEARHAGFl-----Nkam~df~l~lDLgfLtk~k~YTfF~PkfIfYatYLSEK 173 (355)
T PRK13654 114 ---------------PLLAELFQLMARDEARHAGFL-----NKAMKDFGLSLDLGFLTKKKKYTFFPPKFIFYATYLSEK 173 (355)
T ss_pred ---------------cHHHHHHHHHhhhHHHHhhhH-----HHHHHHcCccccchhhccCCceeeeCcceeeehhHhHhh
Confidence 467778887765533 433 34566665543221111 1111 123334556
Q ss_pred eehHHHHHHHHHHhcCC
Q 026998 201 VNFKEFLFAFTRWCGVG 217 (229)
Q Consensus 201 I~~~eF~~~~~~~~~~~ 217 (229)
|.|--|+...++.-..+
T Consensus 174 IGYwRYItIyRHLe~~P 190 (355)
T PRK13654 174 IGYWRYITIYRHLEKHP 190 (355)
T ss_pred hhHHHHHHHHHHHHhCc
Confidence 67776666666654333
No 208
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.87 E-value=55 Score=27.99 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=53.7
Q ss_pred CCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhc-CCC-Cc
Q 026998 105 NKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEG-ST 182 (229)
Q Consensus 105 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~-~~ 182 (229)
.++...+-.+||......+.. .......+.++.+-+.+|.|.+|.|+.+|=..+++.- ... -+
T Consensus 40 agds~at~nefc~~~~~~c~s---------------~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~ 104 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKS---------------EQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDST 104 (575)
T ss_pred cCCchhhhccchhcCCchhhc---------------ccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccch
Confidence 455566666776554433221 1222345788899999999999999999988888754 111 11
Q ss_pred HHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 183 GRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 183 ~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
...- .-|.. .|..|+.++....|..
T Consensus 105 ~kr~-~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 105 RKRS-EKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred hhhh-hhccC----CccceeHHHHHHHHHh
Confidence 1111 12221 4678998887776653
No 209
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=36.78 E-value=70 Score=17.80 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHH
Q 026998 168 SEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 168 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 210 (229)
+|....|..+| .++.++..++..+.. ...++.++.++..
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 56777888777 788888888888864 3445566655543
No 210
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.44 E-value=44 Score=17.10 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=11.8
Q ss_pred CCceehHHHHHHHHHH
Q 026998 198 NGMVNFKEFLFAFTRW 213 (229)
Q Consensus 198 ~g~I~~~eF~~~~~~~ 213 (229)
.|+|++.+++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5678888888777764
No 211
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=35.93 E-value=1.4e+02 Score=20.28 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=42.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 026998 61 AIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (229)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 121 (229)
..|..+-..++..+|.+++..+|...|..+....+..+++.+. ..+..+.+..-..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHh
Confidence 3455555667779999999999999999998888888887763 2566776665443
No 212
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=35.85 E-value=2e+02 Score=22.11 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCCcceeHHHHHHHHHhcC---CCCcHHHHHHHHHhcCCCCCC
Q 026998 160 NKDGYVSRSEMTQAVTESG---EGSTGRIAIKRFEEMDWDKNG 199 (229)
Q Consensus 160 ~~~G~I~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g 199 (229)
.+.|.|+..|+...+.+.. ..++++++....+.+..=+.|
T Consensus 109 ~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 109 KNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp TTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred cCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 3446777777777776652 245666666666666554443
No 213
>PRK00523 hypothetical protein; Provisional
Probab=35.77 E-value=87 Score=19.50 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHhcccCCHHHHHHHHHhc
Q 026998 72 GTIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (229)
Q Consensus 72 G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (229)
=.|+.+.++..+...|..+++..++.+++..
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3688999999999999999999999988775
No 214
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=35.25 E-value=73 Score=26.45 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=5.9
Q ss_pred cceeHHHHHHHHHh
Q 026998 163 GYVSRSEMTQAVTE 176 (229)
Q Consensus 163 G~I~~~el~~~l~~ 176 (229)
|.||++|-...++.
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444444443
No 215
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.18 E-value=86 Score=19.39 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHhcccCCHHHHHHHHHhc
Q 026998 72 GTIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (229)
Q Consensus 72 G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (229)
=.|+.+.++..+...|..+++..++.+++..
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3799999999999999999999999988765
No 216
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=34.59 E-value=17 Score=25.45 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=4.9
Q ss_pred CcceeHHHHHHHH
Q 026998 162 DGYVSRSEMTQAV 174 (229)
Q Consensus 162 ~G~I~~~el~~~l 174 (229)
||.|+.+|...+.
T Consensus 37 DG~v~~~E~~~i~ 49 (140)
T PF05099_consen 37 DGEVDPEEIEAIR 49 (140)
T ss_dssp TSS--CHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3444444444433
No 217
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.53 E-value=2e+02 Score=21.56 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhc----CCCCCCCccHHHHHHHHHHHHHccCCch
Q 026998 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEAC----DINKDMGMKFNEFIVLLCLVYLLKDDPT 130 (229)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 130 (229)
.-..++++|.-||+..--..+..++..++...++--....|..++... +... . +|.+|+..+..-. |
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~-----P- 121 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQ-----P- 121 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCC-----C-
Confidence 345789999999999888899999999888777655555444433311 1111 1 7888887663211 1
Q ss_pred HHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCC
Q 026998 131 ALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGE 179 (229)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 179 (229)
+...... .............+-+.+-+-|-.++.+--...+|...|+
T Consensus 122 i~~~~~~--~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 122 QPRQRPT--DSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred ccCCccc--cccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 0000000 0011111123444555666677777777777777777774
No 218
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=34.46 E-value=88 Score=18.64 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHHhcccCCHHHHHHHHHh
Q 026998 73 TIDHEELKKCFHKLEIKFTEEEINDLFEA 101 (229)
Q Consensus 73 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 101 (229)
.+|.+|+...+..++..++..++-.++..
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQ 37 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45666666666666666666665555544
No 219
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=33.45 E-value=1.5e+02 Score=19.96 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=37.1
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
.||.+.+..+|...|..+....+..+.+.+.. .+.++.+.....
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g-----k~i~eli~~~~~ 59 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALEG-----VNIEEAIKKAAA 59 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhhhc
Confidence 89999999999999999999999999999863 566777765543
No 220
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=33.40 E-value=88 Score=25.01 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=29.1
Q ss_pred CCcceeHHHHHHHHHhc--CCCCcHHH---HHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 161 KDGYVSRSEMTQAVTES--GEGSTGRI---AIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~~--~~~~~~~~---~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
-||.|+..|+. +...+ ...++.+. +..+|+.. .....++.+|++.+...+
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVC 122 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHh
Confidence 36888888887 33333 23466666 44444443 334467777777776533
No 221
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=33.22 E-value=1.9e+02 Score=20.92 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHH
Q 026998 91 TEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEM 170 (229)
Q Consensus 91 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el 170 (229)
....+..++..-+.+.++.|++..|...+..... .++..-|-. +...++.+++
T Consensus 81 ~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----------------------dWIT~~~Lk----h~n~MSk~Qi 133 (175)
T PF04876_consen 81 CHSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLG-----------------------DWITKNFLK----HPNRMSKDQI 133 (175)
T ss_pred HHHHHHHHhcCCcCCcccceeHHHHHHHHHHHhh-----------------------hHHHHHHHh----ccchhhHHHH
Confidence 3445566665544455778999999888875321 344443332 3456788888
Q ss_pred HHHHHhc-----CCCCcHHHHHHHHHhcC
Q 026998 171 TQAVTES-----GEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 171 ~~~l~~~-----~~~~~~~~~~~~~~~~d 194 (229)
+.++... ......+..+.+++.+.
T Consensus 134 k~L~~~Ii~~akae~~dtE~Ye~vwkKmP 162 (175)
T PF04876_consen 134 KTLCEQIIEMAKAESSDTEHYEKVWKKMP 162 (175)
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHhh
Confidence 7776543 22334455555555443
No 222
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=33.06 E-value=95 Score=20.31 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhcCC-----CCCCceehHHHHHHHH
Q 026998 168 SEMTQAVTESGEGSTGRIAIKRFEEMDW-----DKNGMVNFKEFLFAFT 211 (229)
Q Consensus 168 ~el~~~l~~~~~~~~~~~~~~~~~~~d~-----~~~g~I~~~eF~~~~~ 211 (229)
..|+.+|+.-|..++..++..++..++. -..|.|+.+.+.+.=.
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~ 60 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGE 60 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 3455556666888888888887777652 3467787777765433
No 223
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.90 E-value=41 Score=34.02 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCC----cHHHHHHHHHhcCCCCCCceehHHHHHHHHHH
Q 026998 146 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGS----TGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 213 (229)
Q Consensus 146 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~ 213 (229)
..+.+.+++..||++.+|+|...++..++..+..++ .... +.+--.+....+|.|++.+-+-++..-
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 446788899999999999999999999999882222 2211 334444567789999999999988864
No 224
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=32.73 E-value=1.4e+02 Score=20.20 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=41.1
Q ss_pred HhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 155 VFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 155 ~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
-.+..-+. .|+.+.|+.++...|..+.+..++.++..... +|.+|-+.-...
T Consensus 8 llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~~~ 59 (109)
T COG2058 8 LLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNAAE 59 (109)
T ss_pred HHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHhcc
Confidence 33433333 89999999999999999999999999999872 477887776654
No 225
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=32.03 E-value=1.5e+02 Score=24.18 Aligned_cols=133 Identities=10% Similarity=0.151 Sum_probs=74.9
Q ss_pred HHHHHHHHHHh--cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHH
Q 026998 56 LRNCKAIFEKF--DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (229)
Q Consensus 56 ~~~~~~~F~~~--D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 133 (229)
.++|..+...+ |.|+.-.+--++|......+.......-++-+.+.|-.+=+|.+=|.|...-+...
T Consensus 24 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~----------- 92 (323)
T cd01047 24 REEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT----------- 92 (323)
T ss_pred HHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC-----------
Confidence 34555555444 77888888889998765554334444556777777777778888888765544321
Q ss_pred hhhhcCCcchHhhHHHHHHHHHhhcCCCC---cceeHHHHHHHHHhcCCCCcHHHHH-----HHHH----hcCCCCCCce
Q 026998 134 AKSRMGMPKLEATFETLVDAFVFLDKNKD---GYVSRSEMTQAVTESGEGSTGRIAI-----KRFE----EMDWDKNGMV 201 (229)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~---G~I~~~el~~~l~~~~~~~~~~~~~-----~~~~----~~d~~~~g~I 201 (229)
-..+.++|..+..|.. |.| -++|..+|..++-.-+. .+|+ .+.+.-+-+|
T Consensus 93 -------------nP~lae~F~lMaRDEARHAGFl-----Nkam~df~l~lDLgfLtk~r~YTfF~PkfI~YatYLSEKI 154 (323)
T cd01047 93 -------------NPVVAELFRLMARDEARHAGFL-----NKALSDFNLALDLGFLTKTRKYTFFKPKFIFYATYLSEKI 154 (323)
T ss_pred -------------CcHHHHHHHHHhhhHHHHhhhH-----HHHHHHcCcccchhhhccCCceeeeCccceeehhHhhhhh
Confidence 0356777877765533 433 34566665443221111 1111 1233334566
Q ss_pred ehHHHHHHHHHHhcCC
Q 026998 202 NFKEFLFAFTRWCGVG 217 (229)
Q Consensus 202 ~~~eF~~~~~~~~~~~ 217 (229)
.|--|+...++.-..+
T Consensus 155 GYwRYItIyRHLe~~P 170 (323)
T cd01047 155 GYWRYITIYRHLERNP 170 (323)
T ss_pred hhHHHHHHHHHHHhCc
Confidence 6766666666654333
No 226
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.97 E-value=87 Score=21.46 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=23.6
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHHHHhcC
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 194 (229)
-|..|++.++..-+..+++++++.+..-.+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 467788888888888888888888876543
No 227
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=31.79 E-value=85 Score=18.85 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=3.4
Q ss_pred eeHHHHHHHHH
Q 026998 165 VSRSEMTQAVT 175 (229)
Q Consensus 165 I~~~el~~~l~ 175 (229)
++.+|...++.
T Consensus 15 Ls~~e~~~~~~ 25 (66)
T PF02885_consen 15 LSREEAKAAFD 25 (66)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 228
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=31.63 E-value=1.2e+02 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.4
Q ss_pred cCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcC
Q 026998 158 DKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 158 D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 194 (229)
--|.+|++..++|.+.+..-+..+|.+++..++..=|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 3567899999999999876566689999999888644
No 229
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=31.43 E-value=1.5e+02 Score=19.39 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHhcCC
Q 026998 149 TLVDAFVFLDKNKDGYVSRSEMTQAVTESGE 179 (229)
Q Consensus 149 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 179 (229)
-...+-..-...+-.+|+.+++..+++..|.
T Consensus 56 i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~ 86 (91)
T COG2036 56 IAEDAVELAEHAKRKTVKAEDIKLALKRLGR 86 (91)
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHHhcc
Confidence 3444555556677888999999998887764
No 230
>PLN02223 phosphoinositide phospholipase C
Probab=31.05 E-value=2.5e+02 Score=25.04 Aligned_cols=68 Identities=6% Similarity=-0.095 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHhcCCCCCcccHHHHHHHH---HHhc--ccCCHHHHHHHHHhcCCC--------CCCCccHHHHHHHH
Q 026998 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCF---HKLE--IKFTEEEINDLFEACDIN--------KDMGMKFNEFIVLL 119 (229)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~--------~~g~i~~~eF~~~~ 119 (229)
.+....++.+|..+- .+.|.++...+..++ .... ...+.++++.++..+-.. ..+.++++.|...+
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 345677889999985 667899999999888 5443 345566666666554222 12569999999988
Q ss_pred HH
Q 026998 120 CL 121 (229)
Q Consensus 120 ~~ 121 (229)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 75
No 231
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=30.90 E-value=1.3e+02 Score=26.24 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhc---C----CCC-CCceehHHHHHHHHH
Q 026998 153 AFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM---D----WDK-NGMVNFKEFLFAFTR 212 (229)
Q Consensus 153 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~---d----~~~-~g~I~~~eF~~~~~~ 212 (229)
+|..|---.++.++...|..+|+..|..-++-.+..+|..+ + ... -+.++.+-|.+++..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 67777444469999999999999999988888888887765 2 222 346788888887754
No 232
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=30.78 E-value=1.6e+02 Score=27.31 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHhc
Q 026998 147 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 215 (229)
Q Consensus 147 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 215 (229)
....+.+|+..-+.+.-++..+++..+ +.+++++..+..++...+..|+++.|.........
T Consensus 403 ~~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 403 KIAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 345677999998888888888877765 47789999999999877777999999998877543
No 233
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=30.61 E-value=62 Score=19.61 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCC
Q 026998 161 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDK 197 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 197 (229)
.++.++...+...|...|..++.+-+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567999999999988898899999998888887654
No 234
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=29.81 E-value=2.4e+02 Score=21.07 Aligned_cols=39 Identities=8% Similarity=0.180 Sum_probs=30.1
Q ss_pred hhcCCCCcceeHHHHHHHHHhc--CCCCcHHHHHHHHHhcC
Q 026998 156 FLDKNKDGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 156 ~~D~~~~G~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~d 194 (229)
.+.++...++|.++|.+.+... |..++.+.+..+++.+-
T Consensus 141 lHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 141 LHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred hcCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 4455556789999999988876 55788888888888764
No 235
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=29.60 E-value=1.1e+02 Score=20.46 Aligned_cols=45 Identities=7% Similarity=0.032 Sum_probs=37.2
Q ss_pred CCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHH
Q 026998 161 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 210 (229)
..-.+|.+++..+++..|..+....+..+++.+. ..++++++...
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa~~ 58 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLSNV 58 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhhcc
Confidence 3447999999999999999999999998888885 36677877665
No 236
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.36 E-value=2.1e+02 Score=20.15 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcC
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 194 (229)
..++-+|..- ..++..++...+..++.-++..+|+.=|
T Consensus 91 kKLRiAf~lK---------~~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 91 KKLRIAFSLK---------TDDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred HhHhHhhhcc---------cchHHHHHhccCcccccHHHHHHHhCCC
Confidence 4566677643 2358888988899999999999998755
No 237
>PLN02859 glutamine-tRNA ligase
Probab=28.14 E-value=3.7e+02 Score=25.38 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhc
Q 026998 148 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM 193 (229)
Q Consensus 148 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 193 (229)
..+..+|+.+-..+...++..+|-+.|.- |..+|++++...+..+
T Consensus 87 ~Ql~AA~kYl~~~~~~~~d~~~Fek~CGV-GV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 87 AQLEAAFSFFSSTGPESFDLNKFEEACGV-GVVVSPEDIEAAVNEV 131 (788)
T ss_pred HHHHHHHHHHHhCCCCccCHHHHHHhCCC-CEEECHHHHHHHHHHH
Confidence 57788888886666557777777765533 6677888888877754
No 238
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.10 E-value=5.5e+02 Score=24.75 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=59.7
Q ss_pred CCCcccHHHH-----HHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchH
Q 026998 70 SNGTIDHEEL-----KKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLE 144 (229)
Q Consensus 70 ~~G~i~~~e~-----~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (229)
++..|.+.+| ..++..+ ..+.+|+.+|..+..++...++.++|+.++.... ++|--.+.+-..
T Consensus 196 k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~Q---rDpRLNeilfp~------ 263 (1189)
T KOG1265|consen 196 KNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQ---RDPRLNEILFPP------ 263 (1189)
T ss_pred CcCccChhhccHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhc---cCcchhhhhcCC------
Confidence 3445655553 4444443 4567899999999888888999999999987654 223211111111
Q ss_pred hhHHHHHHHHHhhcCC----CCcceeHHHHHHHHHh
Q 026998 145 ATFETLVDAFVFLDKN----KDGYVSRSEMTQAVTE 176 (229)
Q Consensus 145 ~~~~~~~~~F~~~D~~----~~G~I~~~el~~~l~~ 176 (229)
..-..+..+...|-.+ ..|.++.+-|...|..
T Consensus 264 ~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 264 ADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 1124556666666554 4588999988888764
No 239
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=27.75 E-value=64 Score=24.23 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHH
Q 026998 146 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRF 190 (229)
Q Consensus 146 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 190 (229)
..+.++++|..||..+--..+.+++..+|...|+-=...-++..+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 447899999999999888899999999998877643444444433
No 240
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=3.8e+02 Score=22.94 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=14.2
Q ss_pred CCcceeHHHHHHHHHhc
Q 026998 161 KDGYVSRSEMTQAVTES 177 (229)
Q Consensus 161 ~~G~I~~~el~~~l~~~ 177 (229)
|.+.|++++|.++|..+
T Consensus 323 G~eLiSPedl~~ACe~l 339 (432)
T KOG2760|consen 323 GTELISPEDLVNACELL 339 (432)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 77888888888888776
No 241
>PRK01844 hypothetical protein; Provisional
Probab=27.10 E-value=1.4e+02 Score=18.60 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHhcccCCHHHHHHHHHhc
Q 026998 73 TIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (229)
Q Consensus 73 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (229)
.|+.+.++..+...|..+++..++.+++..
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 688899999999999999999999888765
No 242
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=26.84 E-value=2.1e+02 Score=19.40 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=37.1
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
.||.+.+..+|...|..+....+..+...+.. .+.++.+....
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIeElIa~~~ 58 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNIDEAIKKAA 58 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhcc
Confidence 79999999999999999999999999999863 67777776554
No 243
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.39 E-value=3.5e+02 Score=23.39 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHK-LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
.+.+..+-+.+|.|.+|.|+.+|=..+++. +.+.-+...-..-| . ..|..|+.++.-..+...
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f---H-~dD~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF---H-GDDKHITVEDLWEAWKES 130 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc---c-CCccceeHHHHHHHHHhh
Confidence 467899999999999999999998888875 33322221112122 1 246678888877666543
No 244
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=26.33 E-value=1e+02 Score=19.57 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHh
Q 026998 169 EMTQAVTESGEGSTGRIAIKRFEE 192 (229)
Q Consensus 169 el~~~l~~~~~~~~~~~~~~~~~~ 192 (229)
|+..+|+++|..+++++..-+-..
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~~ 44 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEAH 44 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 677788888999999888765543
No 245
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.26 E-value=1.2e+02 Score=16.94 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=19.2
Q ss_pred Cccee-HHHHHHHHHhcCCCCcHHHHHHHHHhc
Q 026998 162 DGYVS-RSEMTQAVTESGEGSTGRIAIKRFEEM 193 (229)
Q Consensus 162 ~G~I~-~~el~~~l~~~~~~~~~~~~~~~~~~~ 193 (229)
.|.|+ ..++..-|...|.-+++..++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 46665 333444444447778888777776653
No 246
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=26.25 E-value=1.1e+02 Score=19.43 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=28.2
Q ss_pred HHHHhc-CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHHHh
Q 026998 172 QAVTES-GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 214 (229)
Q Consensus 172 ~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~ 214 (229)
.+|.+. |-.+.++..+.+-+.++....+.|+|+|.+.+....+
T Consensus 36 ~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344444 4456666666666666666677888998888776543
No 247
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=26.01 E-value=1.6e+02 Score=24.27 Aligned_cols=137 Identities=9% Similarity=0.113 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHH
Q 026998 55 SLRNCKAIFEKF--DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (229)
Q Consensus 55 ~~~~~~~~F~~~--D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 132 (229)
..++|..+...+ |.|+.-.+--++|......+....-..-++-+.+.|-..=+|.+=|.|...-+..
T Consensus 33 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~----------- 101 (337)
T TIGR02029 33 VENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN----------- 101 (337)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC-----------
Confidence 444555555554 6788888888998875554433333345666777777777888888775554421
Q ss_pred HhhhhcCCcchHhhHHHHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHH-----HHHH----hcCCCCCCceeh
Q 026998 133 RAKSRMGMPKLEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAI-----KRFE----EMDWDKNGMVNF 203 (229)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~-----~~~~----~~d~~~~g~I~~ 203 (229)
....+.++|..+..|....-. =+-++|..+|..++-.-+. .+|+ .+.+.-+-+|.|
T Consensus 102 -------------~~P~lae~F~~MaRDEARHAG--FlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~YAtYLSEKIGY 166 (337)
T TIGR02029 102 -------------RDPVVAELFQLMARDEARHAG--FLNKALGDFGLALDLGFLTKTRKYTFFRPKFIYYATYLSEKIGY 166 (337)
T ss_pred -------------CChHHHHHHHHHhhhhHHHhh--hHHHHHHHcCcccchhhhccCCceeeeccceeehhhHhHhhhhh
Confidence 113567778777655332111 1334566665543221111 1111 123333456666
Q ss_pred HHHHHHHHHHhcCC
Q 026998 204 KEFLFAFTRWCGVG 217 (229)
Q Consensus 204 ~eF~~~~~~~~~~~ 217 (229)
--|+...++.-..+
T Consensus 167 wRYItIyRHLe~~P 180 (337)
T TIGR02029 167 WRYITIYRHLEENP 180 (337)
T ss_pred HHHHHHHHHHHhCc
Confidence 66666666654333
No 248
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=25.82 E-value=1.1e+02 Score=20.77 Aligned_cols=24 Identities=4% Similarity=-0.039 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH
Q 026998 168 SEMTQAVTESGEGSTGRIAIKRFE 191 (229)
Q Consensus 168 ~el~~~l~~~~~~~~~~~~~~~~~ 191 (229)
+|++.++......+++++++.+++
T Consensus 82 dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 82 DELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHH
Confidence 344444444333344444444443
No 249
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.77 E-value=89 Score=16.01 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=11.7
Q ss_pred ceeHHHHHHHHHhcCCCC
Q 026998 164 YVSRSEMTQAVTESGEGS 181 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~ 181 (229)
.++..+|+..|+..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456677777777776543
No 250
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=25.74 E-value=2.3e+02 Score=19.45 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q 026998 62 IFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIV 117 (229)
Q Consensus 62 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 117 (229)
.|..+--.++..+|.+++..+|...|..+....+..+++.+.. .+..+.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3444444566789999999999999998888888888877731 56666554
No 251
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.29 E-value=2.6e+02 Score=25.69 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHccCCchHHHhhhhcCCcchHhhHHHHHHH
Q 026998 74 IDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAKSRMGMPKLEATFETLVDA 153 (229)
Q Consensus 74 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (229)
++.+|+. ......+..++.++..+|. ++|.++-+++..++........ .. .-.....+....+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~ 66 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LS----------LIKKQTEEYAALI 66 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hh----------hhhhhhhHHHHHh
Confidence 5666665 2122233456666666665 6777777777666665544321 00 0011123445567
Q ss_pred HHhhcCCCCcceeHHHHHHHHHhc
Q 026998 154 FVFLDKNKDGYVSRSEMTQAVTES 177 (229)
Q Consensus 154 F~~~D~~~~G~I~~~el~~~l~~~ 177 (229)
+...|.+..|++...++..++...
T Consensus 67 ~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 67 MEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred hhhccccccceeeecchhHHHHhc
Confidence 888999999999999888888643
No 252
>PHA02105 hypothetical protein
Probab=23.99 E-value=1.7e+02 Score=17.32 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=28.7
Q ss_pred ceeHHHHHHHHHhc---CCCCcHHHHHHHHHhcCCCC--CCceehHHHHHHHH
Q 026998 164 YVSRSEMTQAVTES---GEGSTGRIAIKRFEEMDWDK--NGMVNFKEFLFAFT 211 (229)
Q Consensus 164 ~I~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~g~I~~~eF~~~~~ 211 (229)
++|++|+..++... ..++..+-+..+-.-+..-. --.++|+||...+-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 46777777777655 33556666655555555333 22568888876553
No 253
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=23.91 E-value=61 Score=20.42 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=16.9
Q ss_pred cCCCCCCceehHHHHHHHHH
Q 026998 193 MDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 193 ~d~~~~g~I~~~eF~~~~~~ 212 (229)
...|..|.|+++.|++.+.-
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l 30 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSL 30 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHH
Confidence 45688999999999998863
No 254
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=23.87 E-value=1.1e+02 Score=19.74 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=20.7
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHHHHhc
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKRFEEM 193 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 193 (229)
|+.+++..+..-....++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677777776667778888877766654
No 255
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=23.84 E-value=1.1e+02 Score=17.00 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.7
Q ss_pred eHHHHHHHHHhcCCCCcHHHH
Q 026998 166 SRSEMTQAVTESGEGSTGRIA 186 (229)
Q Consensus 166 ~~~el~~~l~~~~~~~~~~~~ 186 (229)
+.+++..+.+..|..+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 678888888888999988775
No 256
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=23.82 E-value=2e+02 Score=18.27 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHHhc----CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHH
Q 026998 167 RSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 210 (229)
Q Consensus 167 ~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 210 (229)
...++++.+.. |.+++++..+.+...+-.++- ..++....++|
T Consensus 30 E~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~ 76 (79)
T PF14069_consen 30 EKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMM 76 (79)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHH
Confidence 34455555444 778888888888887765544 56666666655
No 257
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=23.68 E-value=1.3e+02 Score=17.18 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred CcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCC
Q 026998 162 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDW 195 (229)
Q Consensus 162 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 195 (229)
.|.|+..+++..+ | ++..-+-.++..+|.
T Consensus 8 ~~~itv~~~rd~l---g--~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLL---G--LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHH---T--S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHH---C--ccHHHHHHHHHHHhc
Confidence 7899999999988 3 677777777777774
No 258
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=23.56 E-value=2.9e+02 Score=21.44 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCcccHHHHHH-HHHHhccc---CCHHHHHHHHHhcCCCCCCC
Q 026998 61 AIFEKFDEDSNGTIDHEELKK-CFHKLEIK---FTEEEINDLFEACDINKDMG 109 (229)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~-~l~~~~~~---~~~~~~~~l~~~~d~~~~g~ 109 (229)
++.......+.|.|+.+|+.+ +++..+.. ++.+++-+.++.+..=++|+
T Consensus 104 EvC~at~~~nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~gF 156 (249)
T KOG3341|consen 104 EVCLATKHTNGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSGF 156 (249)
T ss_pred HHHHHhhcccCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCCe
Confidence 334444445566888888877 44444433 56666666666666556654
No 259
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=23.15 E-value=2.2e+02 Score=18.42 Aligned_cols=49 Identities=24% Similarity=0.137 Sum_probs=35.8
Q ss_pred cceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHH
Q 026998 163 GYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 211 (229)
Q Consensus 163 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 211 (229)
-.|.-.+|+..|.+...--...+...+=..+|...++.||-=||--+.+
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 4699999999999984333446667788889999999999877754443
No 260
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.77 E-value=1.5e+02 Score=21.25 Aligned_cols=36 Identities=6% Similarity=-0.063 Sum_probs=20.2
Q ss_pred HHhcCCCCcHHHHHHHH----------HhcCCCCCCceehHHHHHH
Q 026998 174 VTESGEGSTGRIAIKRF----------EEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 174 l~~~~~~~~~~~~~~~~----------~~~d~~~~g~I~~~eF~~~ 209 (229)
+.++|..++++++..++ ..+-.+..|..+...+.++
T Consensus 99 ~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 99 FEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 34445555555555555 1122357888888777665
No 261
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.16 E-value=1.8e+02 Score=24.77 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 026998 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (229)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 120 (229)
...++|..+.+- +|.|+-..-+.-+. +..++...+-.+++..|.+.||.++-+||.-.-.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 456778777765 67787766665443 3457778899999999999999999999965443
No 262
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=22.05 E-value=1.9e+02 Score=17.23 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=21.2
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHH
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKR 189 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~ 189 (229)
.+.+++..+.+..|..+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4588899999999999999998764
No 263
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.04 E-value=1.4e+02 Score=25.50 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCCCCceehHHHHHH
Q 026998 149 TLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 209 (229)
Q Consensus 149 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 209 (229)
...++|..+.+ -+|+|+-..-+..+- +.++....+-.+++..|.+.||.++-+||.-.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 35567877765 468898876666554 34588889999999999999999999999643
No 264
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=21.75 E-value=1.4e+02 Score=19.40 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=24.0
Q ss_pred ceeHHHHHHHHHhcCCCCcHHHHHHHHHhcC
Q 026998 164 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 164 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 194 (229)
.|+.++++.+.+-....++++++..+...+.
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLN 32 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4788888888887788889888877766643
No 265
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.46 E-value=2.1e+02 Score=17.64 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=23.1
Q ss_pred cceeHHHHHHHHHhcCCCCcHHHHHHHHHhcC
Q 026998 163 GYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 163 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 194 (229)
..-+.+||...|...|..+|..-+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 35688999999999999999998888888765
No 266
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=21.09 E-value=38 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=7.7
Q ss_pred HHHhcCCCCCCceehH
Q 026998 189 RFEEMDWDKNGMVNFK 204 (229)
Q Consensus 189 ~~~~~d~~~~g~I~~~ 204 (229)
+...=|.+++..|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 3444455555555443
No 267
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=20.87 E-value=2.9e+02 Score=24.36 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 026998 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (229)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 122 (229)
+..-.+|+.+=+.+...++..+|..++..+|......+-...|...+. ....+.|..|+..+..-
T Consensus 485 ~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~-s~~gv~yl~v~~~i~se 549 (612)
T COG5069 485 RSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAG-SVSGVFYLDVLKGIHSE 549 (612)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcc-ccccchHHHHHHHHhhh
Confidence 445667777766667789999999999999877665444445533221 12246777777766543
No 268
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=20.83 E-value=1.8e+02 Score=16.48 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=25.4
Q ss_pred CcceeHHHHHHHHHhc-CCCCcHHHHHHHHHh
Q 026998 162 DGYVSRSEMTQAVTES-GEGSTGRIAIKRFEE 192 (229)
Q Consensus 162 ~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~ 192 (229)
.+.+|.+.|..-|... |..+|.++++-.++.
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 4669999999999876 788999999877654
No 269
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.82 E-value=2e+02 Score=17.18 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=10.3
Q ss_pred CCCCcHHHHHHHHHhcC
Q 026998 178 GEGSTGRIAIKRFEEMD 194 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~d 194 (229)
|..++.+++..++..+.
T Consensus 16 G~~i~~~ei~~~L~~lg 32 (71)
T smart00874 16 GLDLSAEEIEEILKRLG 32 (71)
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 55566666666666654
No 270
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.74 E-value=2.1e+02 Score=19.40 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=18.6
Q ss_pred eeHHHHHHHHHhc--CCCCcHHHHHHHHHhcCCCCCCceehHHHHHHHHH
Q 026998 165 VSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 212 (229)
Q Consensus 165 I~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 212 (229)
++..++-..+... ..++|.+.+...+..- .++|++|...++.
T Consensus 67 vsd~evd~~i~~ia~~n~ls~~ql~~~L~~~------G~s~~~~r~~ir~ 110 (118)
T PF09312_consen 67 VSDEEVDEAIANIAKQNNLSVEQLRQQLEQQ------GISYEEYREQIRK 110 (118)
T ss_dssp --HHHHHHHHHHHHHHTT--HHHHHHHCHHC------T--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 4444544444433 2234555555555432 2577777776665
No 271
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=20.72 E-value=2.5e+02 Score=18.13 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHhcCCCC
Q 026998 149 TLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGS 181 (229)
Q Consensus 149 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~ 181 (229)
-++.+-..-.-.+-.+|+.+++.-+++..|.++
T Consensus 50 I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 50 VIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 344444444445667899999999998887543
No 272
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.59 E-value=1.6e+02 Score=21.06 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=25.1
Q ss_pred eeHHHHHHHHHhcCCCCcHHHHHHHHHhcCC
Q 026998 165 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDW 195 (229)
Q Consensus 165 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 195 (229)
.|+++++.+....+..+|++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 5788888887755667899999999999874
No 273
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=20.01 E-value=2e+02 Score=21.62 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=23.8
Q ss_pred cCCCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhcC
Q 026998 67 DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACD 103 (229)
Q Consensus 67 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 103 (229)
..+.+|.+..+++...+..-+..++.+++..+....+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3578899999999998887777788889988887654
Done!