BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026999
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1
SV=1
Length = 469
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--AH----DCCFKEAVQFMEEC 76
++ GI +F L+E AE+ AK+ L IN D WS H AH K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136
+ W S + HN+WH AL YL L IYD HI L+ DA+ V ++
Sbjct: 241 ETFWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAMLDVV--DSC 296
Query: 137 GLLLRVYVRG 146
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
>sp|Q5RFF7|TTC38_PONAB Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2
SV=1
Length = 469
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--AH----DCCFKEAVQFMEEC 76
++ GI +F L+E AE+ AK+ L IN D WS H AH K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136
+ W S + HN+WH AL YL L IYD HI L+ A+ V ++
Sbjct: 241 ETLWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAMLDVV--DSC 296
Query: 137 GLLLRVYVRG 146
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
>sp|A3KMP2|TTC38_MOUSE Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2
SV=2
Length = 465
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G + D + +V P+ + ++ GI +F L+E A++ AK+ L I D
Sbjct: 151 LGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDA 210
Query: 57 WSQH--AH----DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 110
WS H AH K+ ++FM++ W S + HN+WH AL YL L
Sbjct: 211 WSVHTVAHVHEMRAEIKDGLEFMQQSEGHWKD-SDMLACHNYWHWAL-YLIEKGDYEAAL 268
Query: 111 EIYDNHIWKELE 122
IYD+HI L+
Sbjct: 269 TIYDSHILPSLQ 280
>sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38
PE=2 SV=1
Length = 469
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 9 DIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--AH 62
D + +VLPY ++ G+ +F LLE A + AK+ L +++ D WS H AH
Sbjct: 162 DSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDSWSVHTVAH 221
Query: 63 ----DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118
+ FM+E + W S + H +WH AL ++E L +YDNHI
Sbjct: 222 VHEMRADLDSGLAFMQETENNWKG-SDMLACHVYWHWALYFIE-KGDYEAALTLYDNHI- 278
Query: 119 KELEKPDAVHPEVYLNAL---GLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLD 175
P L+ + +L R+ + G ++V G+R K L ++ D
Sbjct: 279 ----APQCFASGTMLDVVDNSSMLYRLQLEG-VNV-GDRWKNLLQITKSHTQDHMLIFND 332
Query: 176 LLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 217
L L +++ G SK ED+ + L ++ K E Q G+
Sbjct: 333 LHFL--MSSLG--SKDEDMTRELVESMQELSKSPGENQQHGL 370
>sp|A2VD82|TTC38_XENLA Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2
SV=1
Length = 469
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G D + +VLPY + E ++ G+ +F LLE A + AK+ L + + D
Sbjct: 154 LGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDS 213
Query: 57 WSQH--AH----DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 110
WS H AH + FM+E + W S + H +WH AL YL L
Sbjct: 214 WSVHTIAHVHEMKADLDSGLSFMQETENNWKG-SDMLACHVYWHWAL-YLIEKGDYEAAL 271
Query: 111 EIYDNHI 117
+YDNHI
Sbjct: 272 TLYDNHI 278
>sp|A3KPN8|TTC38_DANRE Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3
SV=1
Length = 466
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 26/238 (10%)
Query: 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52
+G D + +V+P Y Q I G+ +F LLE +AE+ AK+ L +
Sbjct: 154 LGEQTQMRDSVARVMPHWKPHMPLYRQ----IKGMYSFGLLETRLYDEAEKMAKEALSLT 209
Query: 53 KHDCWSQHA----HD--CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106
D WS HA H+ ++ + FM W+ C + HN+WH AL ++E +
Sbjct: 210 PEDGWSVHAVAHVHEMKAEVEKGLNFMASTEKNWTVC-DMLACHNYWHWALYHIEKGN-Y 267
Query: 107 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQA 166
L+I+D + + K A+ V ++ LL R+ + G G R + L +
Sbjct: 268 EAALKIFDEQVSQRCVKSGAMLDIV--DSCSLLYRLELEGV--SVGERYRELLQVTQPHS 323
Query: 167 NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDIC 224
+ DL L + + + LL+ L+ + +Q +Q +V +C
Sbjct: 324 EDHTLLFNDLHFLMVSLGSKDTGTTQRLLESLQELAKDPAENRQ--LQIAERVGLPMC 379
>sp|P20848|A1ATR_HUMAN Putative alpha-1-antitrypsin-related protein OS=Homo sapiens
GN=SERPINA2P PE=5 SV=1
Length = 420
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 5 DLCFDIIHQVLPYNQQEDFIFGI---LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61
DL FD+ L Y+ Q + +AF +L LG +D +GL +N +
Sbjct: 59 DLAFDLYKSWLIYHNQHVLVTPTSVAMAFRMLSLGTKADTRTEILEGLNVNLTETPEAKI 118
Query: 62 HDCCFKEAVQFMEECSSTWS-SCSSFMYTHNWWHVALCYLE 101
H+ CF++ +Q + + + S ++ + + +LE
Sbjct: 119 HE-CFQQVLQALSRPDTRLQLTTGSSLFVNKSMKLVDTFLE 158
>sp|P21548|GBRG2_CHICK Gamma-aminobutyric acid receptor subunit gamma-2 OS=Gallus gallus
GN=GABRG2 PE=2 SV=1
Length = 474
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 151
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 69 LNGLLEGYDNKLRPDIGVKPTVIHTDMYVNSIGPVNAINMEYTIDIF 115
>sp|P18508|GBRG2_RAT Gamma-aminobutyric acid receptor subunit gamma-2 OS=Rattus
norvegicus GN=Gabrg2 PE=1 SV=1
Length = 466
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 151
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 69 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 115
>sp|P22723|GBRG2_MOUSE Gamma-aminobutyric acid receptor subunit gamma-2 OS=Mus musculus
GN=Gabrg2 PE=1 SV=3
Length = 474
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 151
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 69 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 115
>sp|P40134|CYAA_HAEIN Adenylate cyclase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=cyaA PE=3 SV=1
Length = 843
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 86 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145
F Y + W + + EG + + L++ N I++ + +PD++ Y LR V
Sbjct: 602 FTYRNVWNEIRTLHFEGQNAILLALKVLSNKIYRGVNRPDSIQVYCYSERYRQDLRQLVM 661
Query: 146 G 146
G
Sbjct: 662 G 662
>sp|Q5REA1|GBRG2_PONAB Gamma-aminobutyric acid receptor subunit gamma-2 OS=Pongo abelii
GN=GABRG2 PE=2 SV=1
Length = 467
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 151
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 116
>sp|P18507|GBRG2_HUMAN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Homo sapiens
GN=GABRG2 PE=1 SV=2
Length = 467
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 151
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 116
>sp|P22300|GBRG2_BOVIN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Bos taurus
GN=GABRG2 PE=2 SV=1
Length = 475
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 151
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,998,788
Number of Sequences: 539616
Number of extensions: 3412097
Number of successful extensions: 9387
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9375
Number of HSP's gapped (non-prelim): 19
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)