Query 026999
Match_columns 229
No_of_seqs 157 out of 231
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2610 Uncharacterized conser 100.0 4E-40 8.6E-45 296.9 13.2 208 1-223 150-370 (491)
2 cd05804 StaR_like StaR_like; a 99.9 3.4E-25 7.3E-30 198.8 23.6 216 5-226 97-318 (355)
3 PRK12370 invasion protein regu 99.1 3.2E-09 7E-14 102.8 17.8 112 2-119 318-435 (553)
4 COG3063 PilF Tfp pilus assembl 99.0 5.7E-09 1.2E-13 91.0 13.3 112 2-119 49-168 (250)
5 PRK15359 type III secretion sy 99.0 5.5E-09 1.2E-13 84.3 11.8 103 8-119 13-121 (144)
6 PRK12370 invasion protein regu 99.0 3E-08 6.5E-13 96.1 18.1 176 3-199 276-468 (553)
7 TIGR00990 3a0801s09 mitochondr 99.0 6.9E-08 1.5E-12 94.2 20.3 202 2-225 379-590 (615)
8 TIGR02521 type_IV_pilW type IV 98.9 4.7E-07 1E-11 73.8 18.8 114 2-119 45-164 (234)
9 PRK10370 formate-dependent nit 98.9 6.8E-08 1.5E-12 82.2 14.1 112 2-119 53-173 (198)
10 PRK11906 transcriptional regul 98.8 5.6E-08 1.2E-12 92.0 11.9 121 3-136 319-446 (458)
11 PRK09782 bacteriophage N4 rece 98.8 6.8E-08 1.5E-12 99.6 13.1 112 1-119 589-706 (987)
12 PRK11189 lipoprotein NlpI; Pro 98.8 1.1E-07 2.3E-12 85.3 12.9 112 1-119 77-194 (296)
13 PRK15174 Vi polysaccharide exp 98.7 3E-07 6.6E-12 91.0 15.7 140 2-148 260-421 (656)
14 PF13429 TPR_15: Tetratricopep 98.7 3.1E-07 6.7E-12 80.8 12.2 133 2-145 124-264 (280)
15 TIGR02552 LcrH_SycD type III s 98.7 7.3E-07 1.6E-11 69.3 12.9 104 10-119 5-114 (135)
16 PRK15179 Vi polysaccharide bio 98.6 3.3E-07 7.2E-12 91.5 12.8 153 1-161 99-261 (694)
17 TIGR00990 3a0801s09 mitochondr 98.6 4.8E-07 1E-11 88.4 13.3 113 1-119 344-462 (615)
18 PRK15359 type III secretion sy 98.6 2.1E-07 4.5E-12 75.1 8.9 78 1-78 37-120 (144)
19 PRK11906 transcriptional regul 98.6 5.8E-07 1.3E-11 85.2 12.4 110 4-119 274-401 (458)
20 KOG4626 O-linked N-acetylgluco 98.6 1.5E-06 3.2E-11 85.0 15.2 159 2-183 300-465 (966)
21 PRK11189 lipoprotein NlpI; Pro 98.6 8.2E-07 1.8E-11 79.6 12.6 111 3-119 41-161 (296)
22 PRK11788 tetratricopeptide rep 98.5 1.6E-05 3.6E-10 72.0 19.9 54 24-77 109-168 (389)
23 PRK15174 Vi polysaccharide exp 98.5 4.6E-06 1E-10 82.7 17.5 113 1-119 225-347 (656)
24 PRK11788 tetratricopeptide rep 98.5 2.4E-05 5.1E-10 71.0 19.4 111 2-118 121-242 (389)
25 PRK11447 cellulose synthase su 98.5 1.7E-05 3.8E-10 83.1 20.9 113 1-119 282-414 (1157)
26 cd05804 StaR_like StaR_like; a 98.4 1.7E-05 3.7E-10 71.1 17.2 204 1-212 127-347 (355)
27 TIGR02917 PEP_TPR_lipo putativ 98.4 2.8E-06 6.1E-11 82.5 12.8 113 1-120 749-867 (899)
28 TIGR02521 type_IV_pilW type IV 98.4 7.4E-06 1.6E-10 66.7 12.6 113 1-119 78-198 (234)
29 PRK11447 cellulose synthase su 98.4 2.4E-05 5.3E-10 82.0 19.3 185 1-203 474-702 (1157)
30 TIGR02917 PEP_TPR_lipo putativ 98.4 2.9E-05 6.3E-10 75.5 18.2 111 2-118 275-391 (899)
31 PF13429 TPR_15: Tetratricopep 98.3 7.6E-07 1.6E-11 78.3 5.9 112 1-118 159-276 (280)
32 PF13432 TPR_16: Tetratricopep 98.3 1.6E-06 3.6E-11 59.7 6.3 56 1-56 10-65 (65)
33 PRK09782 bacteriophage N4 rece 98.3 2.2E-05 4.7E-10 81.4 15.2 111 2-119 556-672 (987)
34 PRK10049 pgaA outer membrane p 98.3 2.5E-05 5.4E-10 78.7 15.2 111 2-119 29-145 (765)
35 PRK15179 Vi polysaccharide bio 98.3 8.3E-06 1.8E-10 81.6 11.6 97 17-119 81-183 (694)
36 KOG4626 O-linked N-acetylgluco 98.2 1.1E-05 2.4E-10 79.0 12.0 152 2-168 368-526 (966)
37 TIGR03302 OM_YfiO outer membra 98.2 1.7E-05 3.7E-10 67.5 11.6 116 1-119 46-195 (235)
38 PF09976 TPR_21: Tetratricopep 98.2 3.4E-05 7.4E-10 61.7 12.4 109 2-117 25-145 (145)
39 COG5010 TadD Flp pilus assembl 98.2 1.4E-05 3.1E-10 70.7 10.8 112 2-119 114-231 (257)
40 PRK10153 DNA-binding transcrip 98.2 9.5E-06 2.1E-10 78.7 9.7 93 5-102 401-501 (517)
41 cd00189 TPR Tetratricopeptide 98.1 2.8E-05 6.1E-10 53.1 9.3 89 25-119 3-97 (100)
42 PRK10049 pgaA outer membrane p 98.1 0.0002 4.2E-09 72.3 18.3 110 1-117 62-177 (765)
43 PRK10153 DNA-binding transcrip 98.1 2.2E-05 4.8E-10 76.1 10.7 110 3-119 357-482 (517)
44 PLN03088 SGT1, suppressor of 98.1 1.9E-05 4.2E-10 72.9 9.9 97 2-101 16-118 (356)
45 PLN02789 farnesyltranstransfer 98.1 3.3E-05 7.2E-10 70.6 11.3 112 2-119 51-171 (320)
46 TIGR03302 OM_YfiO outer membra 98.1 0.00032 7E-09 59.6 16.4 101 16-119 27-144 (235)
47 KOG1126 DNA-binding cell divis 98.1 1.7E-05 3.7E-10 77.6 9.4 131 2-143 435-571 (638)
48 PRK10370 formate-dependent nit 98.0 2.9E-05 6.4E-10 66.0 8.7 82 1-82 86-176 (198)
49 CHL00033 ycf3 photosystem I as 98.0 0.0001 2.2E-09 60.1 11.5 111 3-117 14-140 (168)
50 TIGR02552 LcrH_SycD type III s 98.0 3.6E-05 7.7E-10 59.7 8.3 82 1-82 30-117 (135)
51 PF13414 TPR_11: TPR repeat; P 98.0 1.3E-05 2.9E-10 55.6 4.7 58 21-78 2-66 (69)
52 PRK15363 pathogenicity island 97.9 8.9E-05 1.9E-09 61.4 9.9 91 24-120 37-133 (157)
53 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00017 3.7E-09 53.8 10.7 93 24-119 4-105 (119)
54 TIGR00540 hemY_coli hemY prote 97.9 0.0011 2.4E-08 61.8 18.5 186 2-200 98-291 (409)
55 PF13414 TPR_11: TPR repeat; P 97.9 2.7E-05 5.8E-10 54.0 5.7 53 1-53 16-69 (69)
56 COG5010 TadD Flp pilus assembl 97.9 0.00028 6E-09 62.6 13.2 130 1-142 79-214 (257)
57 PF13432 TPR_16: Tetratricopep 97.9 2.6E-05 5.7E-10 53.6 5.2 55 27-81 2-62 (65)
58 PRK10747 putative protoheme IX 97.9 0.00076 1.7E-08 62.9 16.5 181 2-200 98-291 (398)
59 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.1E-05 8.9E-10 72.8 7.8 62 17-78 70-140 (453)
60 PLN03088 SGT1, suppressor of 97.9 9.9E-05 2.1E-09 68.2 10.2 85 29-119 9-99 (356)
61 PRK02603 photosystem I assembl 97.9 0.00056 1.2E-08 56.1 13.4 109 5-119 16-149 (172)
62 PF12895 Apc3: Anaphase-promot 97.9 5.2E-05 1.1E-09 55.0 6.4 75 34-115 1-83 (84)
63 TIGR00540 hemY_coli hemY prote 97.8 0.00018 3.9E-09 67.2 11.3 112 1-119 276-399 (409)
64 PF13428 TPR_14: Tetratricopep 97.8 5.1E-05 1.1E-09 49.0 5.2 39 23-61 2-40 (44)
65 cd00189 TPR Tetratricopeptide 97.8 0.00016 3.5E-09 49.2 7.9 78 1-78 13-96 (100)
66 PF13371 TPR_9: Tetratricopept 97.8 7.1E-05 1.5E-09 52.3 6.1 57 2-58 9-65 (73)
67 PRK14574 hmsH outer membrane p 97.8 0.0004 8.6E-09 70.9 13.5 110 1-119 81-198 (822)
68 KOG0553 TPR repeat-containing 97.8 0.00013 2.9E-09 65.9 8.6 135 26-174 85-226 (304)
69 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00025 5.5E-09 52.9 8.7 82 1-82 15-108 (119)
70 KOG0547 Translocase of outer m 97.7 0.0021 4.6E-08 61.8 16.4 112 3-120 375-492 (606)
71 PF12688 TPR_5: Tetratrico pep 97.7 0.00056 1.2E-08 54.1 10.7 94 23-119 2-104 (120)
72 COG4783 Putative Zn-dependent 97.7 0.00087 1.9E-08 64.0 13.2 145 1-162 319-469 (484)
73 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.3E-09 43.3 4.9 34 22-55 1-34 (34)
74 PF14559 TPR_19: Tetratricopep 97.6 6.8E-05 1.5E-09 51.7 3.7 55 2-56 5-59 (68)
75 PRK10803 tol-pal system protei 97.6 0.0011 2.5E-08 59.0 11.9 95 22-119 142-246 (263)
76 CHL00033 ycf3 photosystem I as 97.5 0.00051 1.1E-08 56.0 8.5 61 1-61 48-111 (168)
77 KOG1126 DNA-binding cell divis 97.4 0.00062 1.3E-08 66.9 8.9 109 3-117 470-584 (638)
78 KOG1155 Anaphase-promoting com 97.4 0.0095 2.1E-07 57.1 16.0 113 2-120 344-462 (559)
79 COG3063 PilF Tfp pilus assembl 97.4 0.0027 6E-08 55.8 11.3 149 1-167 82-241 (250)
80 PRK14574 hmsH outer membrane p 97.3 0.027 5.8E-07 57.8 19.3 95 17-119 29-131 (822)
81 PRK15363 pathogenicity island 97.3 0.0013 2.9E-08 54.5 8.2 77 2-78 49-131 (157)
82 PRK04841 transcriptional regul 97.3 0.061 1.3E-06 54.5 21.7 118 1-119 504-641 (903)
83 PF14559 TPR_19: Tetratricopep 97.3 0.00085 1.8E-08 46.1 5.6 47 32-78 1-53 (68)
84 KOG0553 TPR repeat-containing 97.2 0.00098 2.1E-08 60.3 7.4 77 2-78 95-177 (304)
85 PRK10866 outer membrane biogen 97.2 0.0073 1.6E-07 53.0 12.6 117 2-120 46-205 (243)
86 PF00515 TPR_1: Tetratricopept 97.2 0.00077 1.7E-08 40.5 4.3 33 23-55 2-34 (34)
87 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0066 1.4E-07 57.2 12.5 104 2-114 183-292 (395)
88 PRK10803 tol-pal system protei 97.2 0.0019 4.1E-08 57.6 8.2 81 2-82 157-249 (263)
89 PF13371 TPR_9: Tetratricopept 97.1 0.0011 2.4E-08 46.2 5.3 48 31-78 4-57 (73)
90 PLN02789 farnesyltranstransfer 97.1 0.0051 1.1E-07 56.3 10.8 111 3-119 87-212 (320)
91 PRK10747 putative protoheme IX 97.1 0.0061 1.3E-07 56.8 11.4 96 17-119 258-357 (398)
92 PF12895 Apc3: Anaphase-promot 97.1 0.00079 1.7E-08 48.7 4.3 74 2-76 3-84 (84)
93 KOG1174 Anaphase-promoting com 97.1 0.0016 3.4E-08 61.7 7.0 111 2-119 382-500 (564)
94 KOG0547 Translocase of outer m 97.0 0.0055 1.2E-07 59.1 10.5 122 5-138 445-579 (606)
95 COG4235 Cytochrome c biogenesi 97.0 0.011 2.3E-07 53.5 11.7 109 5-119 139-256 (287)
96 KOG1840 Kinesin light chain [C 97.0 0.0053 1.2E-07 59.6 10.3 118 1-119 296-438 (508)
97 KOG1840 Kinesin light chain [C 97.0 0.023 5.1E-07 55.2 14.4 189 2-199 255-477 (508)
98 KOG1129 TPR repeat-containing 97.0 0.02 4.3E-07 53.2 12.9 181 3-202 271-459 (478)
99 KOG3060 Uncharacterized conser 97.0 0.0074 1.6E-07 53.9 9.9 110 3-119 67-183 (289)
100 COG4783 Putative Zn-dependent 96.9 0.063 1.4E-06 51.6 16.6 140 28-204 312-457 (484)
101 PRK02603 photosystem I assembl 96.9 0.0063 1.4E-07 49.9 8.4 78 1-78 48-141 (172)
102 KOG2002 TPR-containing nuclear 96.9 0.014 3E-07 59.9 12.3 124 34-176 624-757 (1018)
103 KOG4162 Predicted calmodulin-b 96.8 0.011 2.3E-07 59.4 10.8 112 2-120 664-784 (799)
104 PF12688 TPR_5: Tetratrico pep 96.8 0.01 2.2E-07 47.0 8.8 78 1-78 14-103 (120)
105 PRK04841 transcriptional regul 96.8 0.073 1.6E-06 54.0 17.1 118 1-119 465-602 (903)
106 KOG1173 Anaphase-promoting com 96.8 0.015 3.3E-07 56.7 11.3 91 28-119 386-484 (611)
107 PLN03077 Protein ECB2; Provisi 96.8 0.079 1.7E-06 53.9 17.2 21 179-199 632-652 (857)
108 PLN03218 maturation of RBCL 1; 96.8 0.13 2.8E-06 54.2 18.9 21 180-200 727-747 (1060)
109 PLN03081 pentatricopeptide (PP 96.7 0.057 1.2E-06 53.7 15.4 109 2-119 273-389 (697)
110 KOG4162 Predicted calmodulin-b 96.7 0.011 2.4E-07 59.3 9.8 107 5-117 461-574 (799)
111 PLN03218 maturation of RBCL 1; 96.7 0.21 4.5E-06 52.8 19.6 196 2-204 556-786 (1060)
112 PLN03081 pentatricopeptide (PP 96.6 0.099 2.1E-06 52.0 16.4 185 3-202 340-558 (697)
113 KOG2376 Signal recognition par 96.6 0.019 4.2E-07 56.3 10.4 171 2-198 26-201 (652)
114 PF13424 TPR_12: Tetratricopep 96.5 0.0029 6.3E-08 44.8 3.6 72 21-119 4-75 (78)
115 PF12569 NARP1: NMDA receptor- 96.5 0.031 6.7E-07 54.5 11.7 116 1-117 207-332 (517)
116 KOG1156 N-terminal acetyltrans 96.5 0.12 2.6E-06 51.4 15.4 190 1-201 54-248 (700)
117 PF13525 YfiO: Outer membrane 96.5 0.062 1.3E-06 45.5 12.0 116 2-120 19-171 (203)
118 PLN03077 Protein ECB2; Provisi 96.4 0.21 4.6E-06 50.9 17.6 176 2-202 538-721 (857)
119 KOG1125 TPR repeat-containing 96.4 0.014 3E-07 57.0 8.1 94 20-120 428-528 (579)
120 PF13181 TPR_8: Tetratricopept 96.3 0.0085 1.8E-07 35.7 4.1 32 24-55 3-34 (34)
121 PF09976 TPR_21: Tetratricopep 96.1 0.091 2E-06 41.8 10.6 79 34-115 23-110 (145)
122 PRK15331 chaperone protein Sic 96.1 0.047 1E-06 45.7 9.1 90 24-119 39-134 (165)
123 KOG4555 TPR repeat-containing 96.0 0.085 1.8E-06 43.3 9.8 95 23-119 44-144 (175)
124 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.025 5.5E-07 54.1 7.8 55 1-55 88-146 (453)
125 KOG2002 TPR-containing nuclear 95.9 0.086 1.9E-06 54.3 11.4 116 1-119 212-336 (1018)
126 PF12569 NARP1: NMDA receptor- 95.8 0.24 5.1E-06 48.4 13.8 137 23-177 195-346 (517)
127 PF13431 TPR_17: Tetratricopep 95.7 0.0078 1.7E-07 36.9 2.1 31 12-42 3-33 (34)
128 COG2956 Predicted N-acetylgluc 95.7 0.085 1.8E-06 48.8 9.4 110 3-119 195-311 (389)
129 KOG1156 N-terminal acetyltrans 95.6 0.28 6E-06 48.9 13.4 153 28-202 13-173 (700)
130 KOG1125 TPR repeat-containing 95.6 0.021 4.6E-07 55.7 5.7 77 2-78 444-526 (579)
131 KOG0495 HAT repeat protein [RN 95.5 0.47 1E-05 47.7 14.4 174 2-197 598-778 (913)
132 PF13431 TPR_17: Tetratricopep 95.4 0.012 2.7E-07 36.1 2.2 26 45-70 2-33 (34)
133 PF09295 ChAPs: ChAPs (Chs5p-A 95.4 0.073 1.6E-06 50.3 8.3 75 2-76 214-294 (395)
134 smart00028 TPR Tetratricopepti 95.4 0.04 8.6E-07 30.1 4.1 32 24-55 3-34 (34)
135 KOG2376 Signal recognition par 95.3 0.1 2.2E-06 51.4 9.2 100 34-148 24-129 (652)
136 KOG0543 FKBP-type peptidyl-pro 95.3 0.038 8.3E-07 52.0 6.0 55 24-78 259-319 (397)
137 KOG2076 RNA polymerase III tra 95.2 0.9 2E-05 46.7 15.7 107 23-140 138-252 (895)
138 PF03704 BTAD: Bacterial trans 94.9 0.24 5.2E-06 39.0 8.9 77 2-78 20-124 (146)
139 PF13424 TPR_12: Tetratricopep 94.8 0.032 6.9E-07 39.3 3.2 52 1-52 18-76 (78)
140 KOG1173 Anaphase-promoting com 94.8 0.18 3.8E-06 49.5 9.2 112 2-119 394-518 (611)
141 COG4105 ComL DNA uptake lipopr 94.8 0.4 8.6E-06 42.8 10.7 117 2-120 48-197 (254)
142 PF04733 Coatomer_E: Coatomer 94.7 0.18 3.8E-06 45.5 8.4 68 11-78 190-264 (290)
143 KOG0548 Molecular co-chaperone 94.6 0.15 3.3E-06 49.5 8.2 101 31-139 11-117 (539)
144 COG1729 Uncharacterized protei 94.6 0.34 7.3E-06 43.4 9.8 93 25-120 144-245 (262)
145 KOG2076 RNA polymerase III tra 94.5 2.9 6.3E-05 43.2 17.2 113 1-119 152-270 (895)
146 PF13525 YfiO: Outer membrane 94.5 0.39 8.5E-06 40.6 9.6 97 22-120 5-120 (203)
147 KOG1127 TPR repeat-containing 94.1 0.19 4.1E-06 52.3 7.8 110 4-117 474-589 (1238)
148 PF14853 Fis1_TPR_C: Fis1 C-te 93.9 0.15 3.2E-06 34.7 4.8 36 25-60 4-39 (53)
149 COG4235 Cytochrome c biogenesi 93.8 0.36 7.8E-06 43.8 8.5 82 1-82 169-259 (287)
150 PF13176 TPR_7: Tetratricopept 93.8 0.12 2.7E-06 31.6 3.9 31 24-54 1-31 (36)
151 KOG1128 Uncharacterized conser 93.8 0.52 1.1E-05 47.6 10.1 134 2-144 499-638 (777)
152 PF10300 DUF3808: Protein of u 93.7 0.7 1.5E-05 44.4 10.8 73 5-77 250-332 (468)
153 PF06552 TOM20_plant: Plant sp 93.6 0.23 5E-06 42.3 6.4 75 4-78 7-101 (186)
154 PF10300 DUF3808: Protein of u 93.6 0.59 1.3E-05 44.9 10.1 113 2-119 202-334 (468)
155 COG2956 Predicted N-acetylgluc 93.5 1.1 2.5E-05 41.6 11.1 112 3-119 156-278 (389)
156 COG4785 NlpI Lipoprotein NlpI, 93.3 0.4 8.7E-06 42.5 7.6 77 2-78 79-161 (297)
157 PRK14720 transcript cleavage f 93.1 0.75 1.6E-05 47.8 10.4 110 2-120 45-179 (906)
158 PRK10866 outer membrane biogen 93.0 1.6 3.4E-05 38.3 11.1 98 21-120 31-154 (243)
159 PF13512 TPR_18: Tetratricopep 92.9 0.65 1.4E-05 37.9 7.9 52 27-78 15-75 (142)
160 KOG1174 Anaphase-promoting com 92.9 1.1 2.3E-05 43.1 10.3 77 2-78 246-328 (564)
161 KOG0550 Molecular chaperone (D 92.7 0.44 9.5E-06 45.4 7.4 52 2-53 183-234 (486)
162 PF13374 TPR_10: Tetratricopep 92.6 0.25 5.4E-06 30.0 4.1 31 23-53 3-33 (42)
163 PF13174 TPR_6: Tetratricopept 92.5 0.34 7.3E-06 28.0 4.4 32 24-55 2-33 (33)
164 COG4785 NlpI Lipoprotein NlpI, 92.4 0.61 1.3E-05 41.3 7.5 75 2-76 113-192 (297)
165 COG1729 Uncharacterized protei 92.2 0.73 1.6E-05 41.3 7.9 83 1-83 154-248 (262)
166 KOG0624 dsRNA-activated protei 92.1 2.4 5.3E-05 39.9 11.4 144 1-163 85-251 (504)
167 PF13512 TPR_18: Tetratricopep 92.1 2.1 4.6E-05 35.0 9.8 63 2-64 24-91 (142)
168 KOG2003 TPR repeat-containing 92.0 1.8 3.9E-05 42.1 10.7 107 2-115 433-549 (840)
169 PRK14720 transcript cleavage f 91.9 0.31 6.7E-06 50.6 5.9 60 18-78 112-177 (906)
170 KOG1155 Anaphase-promoting com 91.6 1.6 3.4E-05 42.4 9.8 109 4-118 380-494 (559)
171 PF14938 SNAP: Soluble NSF att 91.6 1.2 2.5E-05 39.6 8.6 90 29-120 82-185 (282)
172 KOG0543 FKBP-type peptidyl-pro 91.5 1.2 2.6E-05 42.1 8.8 60 1-61 270-329 (397)
173 KOG0548 Molecular co-chaperone 91.3 0.81 1.8E-05 44.6 7.7 80 34-120 370-456 (539)
174 PF14938 SNAP: Soluble NSF att 91.2 0.81 1.7E-05 40.6 7.2 115 3-119 89-225 (282)
175 KOG0550 Molecular chaperone (D 90.9 1.5 3.2E-05 42.0 8.8 113 2-120 217-351 (486)
176 PF07719 TPR_2: Tetratricopept 90.9 0.45 9.7E-06 27.7 3.7 28 91-119 3-30 (34)
177 PF04733 Coatomer_E: Coatomer 90.8 0.88 1.9E-05 41.0 7.1 94 20-119 129-230 (290)
178 COG3071 HemY Uncharacterized e 90.7 15 0.00034 34.8 15.7 177 2-196 98-287 (400)
179 COG2976 Uncharacterized protei 90.6 1.7 3.7E-05 37.5 8.3 103 9-119 73-188 (207)
180 PF04184 ST7: ST7 protein; In 90.5 1.9 4.2E-05 42.0 9.4 125 4-139 184-339 (539)
181 PF07721 TPR_4: Tetratricopept 89.9 0.46 1E-05 27.0 3.0 26 22-47 1-26 (26)
182 PF06552 TOM20_plant: Plant sp 89.6 1.1 2.4E-05 38.2 6.2 75 37-116 6-99 (186)
183 PF13176 TPR_7: Tetratricopept 89.6 0.58 1.3E-05 28.5 3.5 27 92-119 2-28 (36)
184 PRK15331 chaperone protein Sic 89.4 1.8 4E-05 36.2 7.3 77 2-78 51-133 (165)
185 KOG0495 HAT repeat protein [RN 89.3 3.9 8.4E-05 41.4 10.5 111 1-119 664-782 (913)
186 PF03704 BTAD: Bacterial trans 89.2 4.4 9.6E-05 31.7 9.2 83 31-119 15-125 (146)
187 PRK10941 hypothetical protein; 88.5 1.2 2.7E-05 39.9 6.1 55 24-78 183-243 (269)
188 COG0457 NrfG FOG: TPR repeat [ 88.5 8.9 0.00019 28.8 12.1 110 5-119 112-231 (291)
189 COG2909 MalT ATP-dependent tra 88.2 12 0.00026 38.9 13.4 71 21-98 457-538 (894)
190 COG4700 Uncharacterized protei 88.2 1.7 3.7E-05 37.8 6.5 82 1-82 102-192 (251)
191 TIGR03504 FimV_Cterm FimV C-te 87.4 1.7 3.6E-05 28.5 4.6 40 94-141 4-43 (44)
192 KOG0624 dsRNA-activated protei 86.9 1.3 2.8E-05 41.7 5.4 55 2-56 321-375 (504)
193 PF12968 DUF3856: Domain of Un 86.5 2.4 5.1E-05 34.3 5.9 73 20-117 53-127 (144)
194 COG0457 NrfG FOG: TPR repeat [ 86.2 12 0.00027 28.1 12.1 113 2-119 73-196 (291)
195 KOG2003 TPR repeat-containing 86.2 12 0.00026 36.7 11.5 126 1-143 537-704 (840)
196 PF00515 TPR_1: Tetratricopept 85.7 1.5 3.2E-05 25.7 3.5 27 92-119 4-30 (34)
197 KOG1128 Uncharacterized conser 85.5 22 0.00049 36.3 13.4 175 2-198 438-613 (777)
198 COG4976 Predicted methyltransf 85.0 1.6 3.5E-05 38.9 4.8 57 2-58 9-65 (287)
199 PF13174 TPR_6: Tetratricopept 85.0 0.98 2.1E-05 26.0 2.5 27 92-119 3-29 (33)
200 KOG3081 Vesicle coat complex C 84.8 3.6 7.7E-05 37.3 6.9 61 18-78 203-269 (299)
201 PF13374 TPR_10: Tetratricopep 84.6 1.4 3.1E-05 26.5 3.2 26 94-120 7-32 (42)
202 smart00028 TPR Tetratricopepti 84.0 1.5 3.2E-05 23.4 2.8 27 92-119 4-30 (34)
203 PF05843 Suf: Suppressor of fo 83.7 9.7 0.00021 33.9 9.3 108 5-118 18-135 (280)
204 COG3071 HemY Uncharacterized e 83.5 6.7 0.00015 37.1 8.4 108 1-120 276-391 (400)
205 PF05843 Suf: Suppressor of fo 83.3 17 0.00038 32.2 10.8 79 35-119 14-99 (280)
206 PF04910 Tcf25: Transcriptiona 82.8 19 0.00042 33.5 11.3 113 1-119 53-222 (360)
207 KOG1915 Cell cycle control pro 82.5 15 0.00031 36.2 10.4 110 4-119 420-536 (677)
208 PF13281 DUF4071: Domain of un 82.2 15 0.00032 34.7 10.2 138 2-147 196-359 (374)
209 KOG1129 TPR repeat-containing 82.0 17 0.00038 34.2 10.3 109 2-116 338-455 (478)
210 PF07720 TPR_3: Tetratricopept 82.0 3 6.6E-05 25.9 3.9 28 28-55 7-36 (36)
211 PF10607 CLTH: CTLH/CRA C-term 82.0 6.4 0.00014 31.0 6.8 98 62-164 13-116 (145)
212 KOG4234 TPR repeat-containing 81.8 5.4 0.00012 35.1 6.6 82 32-119 105-197 (271)
213 PF13181 TPR_8: Tetratricopept 81.0 3.5 7.5E-05 24.0 3.8 28 91-119 3-30 (34)
214 KOG1127 TPR repeat-containing 81.0 3.2 6.9E-05 43.6 5.7 59 3-61 17-76 (1238)
215 KOG1308 Hsp70-interacting prot 80.3 0.67 1.4E-05 43.2 0.6 77 2-78 128-210 (377)
216 KOG4555 TPR repeat-containing 80.1 10 0.00023 31.3 7.3 77 2-78 57-143 (175)
217 PF14561 TPR_20: Tetratricopep 78.5 14 0.00031 27.4 7.3 70 42-118 8-86 (90)
218 KOG3364 Membrane protein invol 78.5 2.7 5.9E-05 34.4 3.5 62 55-120 38-101 (149)
219 PF13428 TPR_14: Tetratricopep 78.3 2.3 4.9E-05 26.9 2.5 29 1-29 14-42 (44)
220 KOG2053 Mitochondrial inherita 77.8 15 0.00032 38.3 9.2 105 2-114 23-138 (932)
221 COG3118 Thioredoxin domain-con 77.5 23 0.0005 32.5 9.5 108 6-120 121-266 (304)
222 PF14561 TPR_20: Tetratricopep 77.3 5.8 0.00013 29.5 4.8 49 8-56 8-56 (90)
223 KOG4642 Chaperone-dependent E3 77.0 6.8 0.00015 35.2 5.8 75 4-78 26-106 (284)
224 KOG4234 TPR repeat-containing 76.8 5.3 0.00011 35.2 5.0 77 2-78 109-196 (271)
225 PF04184 ST7: ST7 protein; In 76.3 83 0.0018 31.1 15.8 81 35-118 181-287 (539)
226 KOG3081 Vesicle coat complex C 76.0 40 0.00087 30.7 10.5 130 29-177 144-281 (299)
227 KOG3785 Uncharacterized conser 75.1 38 0.00082 32.4 10.4 132 1-143 70-233 (557)
228 PF07079 DUF1347: Protein of u 74.6 66 0.0014 31.5 12.2 147 22-203 6-159 (549)
229 COG4700 Uncharacterized protei 74.3 30 0.00066 30.2 9.0 110 3-117 71-187 (251)
230 PF10345 Cohesin_load: Cohesin 74.2 95 0.0021 30.7 18.4 174 21-204 58-257 (608)
231 COG3898 Uncharacterized membra 73.7 20 0.00044 34.5 8.4 56 23-78 153-216 (531)
232 KOG1915 Cell cycle control pro 73.3 77 0.0017 31.4 12.3 126 2-144 336-514 (677)
233 PF12862 Apc5: Anaphase-promot 73.3 9.4 0.0002 28.2 5.1 53 2-54 12-73 (94)
234 KOG4648 Uncharacterized conser 72.3 8.1 0.00018 36.6 5.4 77 2-78 111-193 (536)
235 PRK10941 hypothetical protein; 72.2 15 0.00033 32.9 7.0 58 2-59 195-252 (269)
236 PF08424 NRDE-2: NRDE-2, neces 72.0 62 0.0013 29.4 11.1 139 5-144 48-211 (321)
237 KOG1130 Predicted G-alpha GTPa 71.6 6.9 0.00015 37.8 4.8 120 1-121 208-346 (639)
238 KOG2796 Uncharacterized conser 71.2 6.9 0.00015 35.8 4.5 130 2-139 191-333 (366)
239 PF12862 Apc5: Anaphase-promot 70.4 33 0.00071 25.2 7.5 27 94-121 46-72 (94)
240 KOG2796 Uncharacterized conser 70.4 65 0.0014 29.6 10.5 77 2-78 226-314 (366)
241 COG2912 Uncharacterized conser 69.4 8 0.00017 34.9 4.6 60 23-82 182-247 (269)
242 KOG1585 Protein required for f 69.2 61 0.0013 29.4 10.0 111 9-120 14-140 (308)
243 KOG1941 Acetylcholine receptor 68.0 22 0.00047 34.0 7.2 177 1-184 135-341 (518)
244 PF13281 DUF4071: Domain of un 67.9 53 0.0011 31.0 9.9 95 3-103 156-273 (374)
245 COG4105 ComL DNA uptake lipopr 67.4 26 0.00057 31.4 7.4 119 22-148 34-170 (254)
246 PF12968 DUF3856: Domain of Un 65.4 18 0.00039 29.2 5.3 51 1-51 68-129 (144)
247 PF11846 DUF3366: Domain of un 64.5 19 0.00042 29.8 5.8 49 8-57 131-179 (193)
248 COG3898 Uncharacterized membra 64.0 1.5E+02 0.0032 28.8 13.9 170 2-197 202-388 (531)
249 KOG3824 Huntingtin interacting 63.9 11 0.00024 35.2 4.4 60 2-61 130-189 (472)
250 KOG1130 Predicted G-alpha GTPa 63.7 13 0.00028 36.1 4.9 116 1-119 108-264 (639)
251 KOG3364 Membrane protein invol 62.7 19 0.00042 29.5 5.1 55 7-61 54-110 (149)
252 KOG0985 Vesicle coat protein c 61.0 1.1E+02 0.0023 33.2 11.2 134 32-197 1058-1191(1666)
253 COG2909 MalT ATP-dependent tra 60.2 1.2E+02 0.0026 31.8 11.4 95 20-115 413-522 (894)
254 COG4941 Predicted RNA polymera 59.2 22 0.00048 33.5 5.5 54 7-60 348-403 (415)
255 COG2912 Uncharacterized conser 59.2 27 0.00059 31.5 6.0 59 3-61 196-254 (269)
256 KOG4340 Uncharacterized conser 58.4 51 0.0011 30.9 7.6 54 62-121 156-209 (459)
257 COG3118 Thioredoxin domain-con 57.6 51 0.0011 30.3 7.5 120 62-201 146-266 (304)
258 KOG2047 mRNA splicing factor [ 57.4 49 0.0011 33.8 7.8 71 48-119 341-416 (835)
259 PF10602 RPN7: 26S proteasome 56.6 1.1E+02 0.0025 25.3 9.1 95 24-119 38-142 (177)
260 PF11817 Foie-gras_1: Foie gra 56.4 19 0.00041 31.4 4.5 53 66-119 154-207 (247)
261 PF12854 PPR_1: PPR repeat 56.0 29 0.00063 20.7 4.0 28 20-47 5-32 (34)
262 smart00386 HAT HAT (Half-A-TPR 55.8 16 0.00034 20.3 2.7 23 36-58 1-23 (33)
263 KOG1070 rRNA processing protei 55.2 3.5E+02 0.0075 30.4 14.9 136 41-200 1516-1662(1710)
264 KOG3060 Uncharacterized conser 55.0 1.7E+02 0.0036 26.7 11.2 114 1-119 99-220 (289)
265 COG4976 Predicted methyltransf 54.4 16 0.00035 32.7 3.6 50 29-78 2-57 (287)
266 PF10516 SHNi-TPR: SHNi-TPR; 54.2 30 0.00064 21.8 3.9 30 23-52 2-31 (38)
267 PF13041 PPR_2: PPR repeat fam 52.3 22 0.00048 22.6 3.3 23 98-121 12-34 (50)
268 KOG0376 Serine-threonine phosp 51.4 12 0.00027 36.2 2.6 76 3-78 19-100 (476)
269 PF10602 RPN7: 26S proteasome 51.1 81 0.0017 26.2 7.3 95 94-201 41-143 (177)
270 KOG2471 TPR repeat-containing 48.8 37 0.00081 33.6 5.4 63 23-90 620-690 (696)
271 KOG4642 Chaperone-dependent E3 48.8 24 0.00053 31.7 3.9 53 3-55 59-111 (284)
272 PF14853 Fis1_TPR_C: Fis1 C-te 47.8 27 0.00059 23.5 3.2 25 94-119 6-30 (53)
273 KOG2422 Uncharacterized conser 47.6 1.8E+02 0.0038 29.4 9.8 112 2-117 298-446 (665)
274 KOG4507 Uncharacterized conser 45.8 88 0.0019 31.8 7.5 127 9-145 200-336 (886)
275 PF04781 DUF627: Protein of un 45.3 1E+02 0.0022 24.1 6.5 54 29-82 3-69 (111)
276 PF09613 HrpB1_HrpK: Bacterial 41.9 2E+02 0.0044 23.9 10.4 76 34-119 22-105 (160)
277 KOG2610 Uncharacterized conser 40.9 1.1E+02 0.0023 29.2 6.9 141 36-195 117-270 (491)
278 KOG3807 Predicted membrane pro 40.4 2E+02 0.0042 27.5 8.6 118 9-139 205-355 (556)
279 KOG4648 Uncharacterized conser 36.8 44 0.00094 31.8 3.7 53 4-56 147-199 (536)
280 TIGR00756 PPR pentatricopeptid 36.2 53 0.0011 18.2 2.9 21 99-120 10-30 (35)
281 COG2976 Uncharacterized protei 35.5 1.7E+02 0.0036 25.5 6.8 72 43-117 73-153 (207)
282 PF04781 DUF627: Protein of un 34.9 1.8E+02 0.0038 22.8 6.4 61 1-61 9-83 (111)
283 KOG0396 Uncharacterized conser 34.9 4.1E+02 0.0088 25.3 10.2 135 23-164 117-265 (389)
284 KOG2047 mRNA splicing factor [ 34.7 2E+02 0.0043 29.6 8.1 110 5-118 494-614 (835)
285 PF04910 Tcf25: Transcriptiona 34.1 3.9E+02 0.0084 24.8 10.8 96 18-118 36-167 (360)
286 PF10579 Rapsyn_N: Rapsyn N-te 33.8 1E+02 0.0022 22.8 4.6 47 5-51 23-72 (80)
287 COG3947 Response regulator con 33.7 56 0.0012 30.3 3.9 34 23-56 280-313 (361)
288 PF13812 PPR_3: Pentatricopept 33.2 72 0.0016 17.8 3.2 23 179-201 8-30 (34)
289 PF04505 Dispanin: Interferon- 32.5 39 0.00086 24.7 2.3 20 33-52 48-67 (82)
290 PF09613 HrpB1_HrpK: Bacterial 30.5 1.8E+02 0.004 24.2 6.2 84 17-119 39-122 (160)
291 KOG1811 Predicted Zn2+-binding 28.3 1.1E+02 0.0023 31.3 5.1 83 95-187 593-682 (1141)
292 KOG2300 Uncharacterized conser 27.8 6.3E+02 0.014 25.3 11.0 134 1-140 336-490 (629)
293 KOG2053 Mitochondrial inherita 27.4 1.5E+02 0.0031 31.3 5.9 61 1-61 56-116 (932)
294 PF04212 MIT: MIT (microtubule 26.7 1.6E+02 0.0035 20.1 4.6 22 28-49 11-32 (69)
295 smart00745 MIT Microtubule Int 26.4 1.4E+02 0.0031 20.8 4.3 12 39-50 6-17 (77)
296 PF04053 Coatomer_WDAD: Coatom 26.4 5.9E+02 0.013 24.5 10.1 154 2-200 275-430 (443)
297 smart00299 CLH Clathrin heavy 26.4 2.7E+02 0.0058 21.3 6.3 82 33-115 18-107 (140)
298 KOG0551 Hsp90 co-chaperone CNS 25.1 2.1E+02 0.0046 27.1 6.1 82 32-119 91-182 (390)
299 PF08181 DegQ: DegQ (SacQ) fam 23.8 45 0.00098 21.6 1.1 13 133-145 7-19 (46)
300 PF10255 Paf67: RNA polymerase 23.5 1.2E+02 0.0026 29.0 4.4 97 18-117 69-191 (404)
301 PF03130 HEAT_PBS: PBS lyase H 23.4 1.4E+02 0.0029 16.9 3.0 23 177-199 4-26 (27)
302 KOG1538 Uncharacterized conser 22.2 2.2E+02 0.0048 29.5 6.0 82 2-101 787-869 (1081)
303 KOG0545 Aryl-hydrocarbon recep 21.8 2E+02 0.0043 26.3 5.1 59 2-60 244-302 (329)
304 KOG1992 Nuclear export recepto 21.7 6.3E+02 0.014 26.8 9.1 104 44-169 27-138 (960)
305 PHA02537 M terminase endonucle 21.3 1.1E+02 0.0024 26.9 3.4 23 34-56 190-212 (230)
306 KOG0551 Hsp90 co-chaperone CNS 21.2 3.2E+02 0.007 25.9 6.5 74 5-78 98-181 (390)
307 PF02184 HAT: HAT (Half-A-TPR) 21.0 1.2E+02 0.0025 18.6 2.5 19 37-55 2-20 (32)
308 KOG1070 rRNA processing protei 20.6 7E+02 0.015 28.2 9.5 51 63-119 1613-1663(1710)
309 KOG2396 HAT (Half-A-TPR) repea 20.3 2E+02 0.0044 28.5 5.2 44 13-56 130-174 (568)
310 KOG1941 Acetylcholine receptor 20.1 2E+02 0.0044 27.7 5.0 94 22-119 122-235 (518)
311 PF10414 CysG_dimeriser: Siroh 20.0 2.1E+02 0.0046 19.2 4.0 46 5-50 11-60 (60)
No 1
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4e-40 Score=296.87 Aligned_cols=208 Identities=34% Similarity=0.548 Sum_probs=181.5
Q ss_pred CCChhHHHHHHHhhCCCC----CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~----~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
+|+..++++.++|++|.| |.++|++||+||+|+|+|.|++||+.++|||+|||+|+||+|+ |.||++||+
T Consensus 150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 589999999999999985 3478999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccc
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV 150 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~ 150 (229)
+||+..+++|.. +.++.+|||||.||||++.+ +|+.|++|||++|+++++| .|++|++|||++.|+++
T Consensus 230 eFM~~ted~Wr~-s~mlasHNyWH~Al~~iE~a-eye~aleIyD~ei~k~l~k---------~Da~a~~~~ld~dgv~~- 297 (491)
T KOG2610|consen 230 EFMYKTEDDWRQ-SWMLASHNYWHTALFHIEGA-EYEKALEIYDREIWKRLEK---------DDAVARDVYLDLDGVDL- 297 (491)
T ss_pred HHHHhcccchhh-hhHHHhhhhHHHHHhhhccc-chhHHHHHHHHHHHHHhhc---------cchhhhhhhhhhhhHHh-
Confidence 999999999995 88999999999999999975 9999999999999998754 48999999999999975
Q ss_pred ccccHHH---HHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 026999 151 FGNRLKV---LADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223 (229)
Q Consensus 151 vg~rW~~---la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 223 (229)
-.++|.. |++....+..++.-+..|+-..|++..-.....+..|++ ++++...++ .|..++++|.|.+.+
T Consensus 298 ~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~~~~~~~~l~~~ll~-~~~~ls~~n--~q~~~t~gi~l~~~~ 370 (491)
T KOG2610|consen 298 RSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLE-LKSLLSEDN--AQISKTKGIPLYDGM 370 (491)
T ss_pred HHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHH-HHHHhhhhh--hhhhhhhccchHHHh
Confidence 2478884 455555555555555556666899999999999999999 888876643 567799999998875
No 2
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.94 E-value=3.4e-25 Score=198.79 Aligned_cols=216 Identities=35% Similarity=0.502 Sum_probs=180.9
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
..+...+....|..|.++++++++|+++.++|++++|++.++++++++|+++|++|. .+|++++|+.+++++.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 97 DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 334444444557788999999999999999999999999999999999999999988 79999999999999999
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHH
Q 026999 79 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVL 158 (229)
Q Consensus 79 ~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~l 158 (229)
.|+. ++....|+|||+|.+++..| ++++|+++|++.+.+.. .+....+++|+++++||+.+.|.. ++.+||+.+
T Consensus 177 ~~~~-~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~w~~~ 250 (355)
T cd05804 177 TWDC-SSMLRGHNWWHLALFYLERG-DYEAALAIYDTHIAPSA---ESDPALDLLDAASLLWRLELAGHV-DVGDRWEDL 250 (355)
T ss_pred ccCC-CcchhHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcccc---CCChHHHHhhHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 8876 44567899999999999997 99999999999876531 123455567999999999999964 368999999
Q ss_pred HHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhhh
Q 026999 159 ADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICLI 226 (229)
Q Consensus 159 a~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (229)
++...+.++++...|+++|.++++...|+.+.+.++|+.++..+..++..........+.++.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 99887776778899999999999999999999999999999998775333334456666777777654
No 3
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=3.2e-09 Score=102.79 Aligned_cols=112 Identities=8% Similarity=-0.048 Sum_probs=95.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++....++++..+|+++.++..+|+++...|++++|++..++|+++||+++.++.. .+|++++|+.++++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999987765 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.+ .+|..+... .+++..++..| ++++|++.|++.+..
T Consensus 398 Al~----l~P~~~~~~-~~~~~~~~~~g-~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 398 CLK----LDPTRAAAG-ITKLWITYYHT-GIDDAIRLGDELRSQ 435 (553)
T ss_pred HHh----cCCCChhhH-HHHHHHHHhcc-CHHHHHHHHHHHHHh
Confidence 998 666533222 23444456666 899999999887654
No 4
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=5.7e-09 Score=90.98 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=102.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
||...++..++++|.++|++.-++..+|+.++..|+.+-|.+..|+||.++|+++..+.. -+|++++|..++++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999988 69999999999999
Q ss_pred chhhccCCCCcchhh--hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTH--NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H--~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++. .+ ..+.+ -|-++++|.+..| +.+.|.+.|.+.+.-
T Consensus 129 Al~----~P-~Y~~~s~t~eN~G~Cal~~g-q~~~A~~~l~raL~~ 168 (250)
T COG3063 129 ALA----DP-AYGEPSDTLENLGLCALKAG-QFDQAEEYLKRALEL 168 (250)
T ss_pred HHh----CC-CCCCcchhhhhhHHHHhhcC-CchhHHHHHHHHHHh
Confidence 987 33 33333 6677999999997 999999999998876
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=5.5e-09 Score=84.35 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=88.9
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhcc
Q 026999 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWS 81 (229)
Q Consensus 8 ~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~ 81 (229)
.+..++++..+|++.+ .+|+++...|+|++|.+.+++++.++|+++.++.. ..|++++|+.+++++..
T Consensus 13 ~~~~~~al~~~p~~~~---~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--- 86 (144)
T PRK15359 13 EDILKQLLSVDPETVY---ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--- 86 (144)
T ss_pred HHHHHHHHHcCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---
Confidence 3567788888887633 57889999999999999999999999999999888 79999999999999998
Q ss_pred CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 82 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 82 ~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|- ....+.++|.++...| ++++|++.|++.|..
T Consensus 87 -l~p~-~~~a~~~lg~~l~~~g-~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 -LDAS-HPEPVYQTGVCLKMMG-EPGLAREAFQTAIKM 121 (144)
T ss_pred -cCCC-CcHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 5553 3356678999999997 999999999999876
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=3e-08 Score=96.09 Aligned_cols=176 Identities=11% Similarity=0.054 Sum_probs=119.7
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~---------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~ 67 (229)
+.++++...++++..+|+++.++..+|.++... +++++|++.+++|++++|+++.++.. .+|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356889999999999999999998888766533 34899999999999999999998776 799999
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCC
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE 147 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~ 147 (229)
+|+..++++.. .+|-.+ -.+.++|..++..| ++++|+..|++.+... +.. ...... +++-+...|
T Consensus 356 ~A~~~~~~Al~----l~P~~~-~a~~~lg~~l~~~G-~~~eAi~~~~~Al~l~--P~~---~~~~~~---~~~~~~~~g- 420 (553)
T PRK12370 356 VGSLLFKQANL----LSPISA-DIKYYYGWNLFMAG-QLEEALQTINECLKLD--PTR---AAAGIT---KLWITYYHT- 420 (553)
T ss_pred HHHHHHHHHHH----hCCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC--CCC---hhhHHH---HHHHHHhcc-
Confidence 99999999998 454322 23457899999987 9999999999988762 221 111111 111111222
Q ss_pred cccccccHHHHHHHHHhhhhc--cccchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 148 LDVFGNRLKVLADCVADQANW--YLECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 148 ~v~vg~rW~~la~~~~~~~~~--~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
+.++-......-... +..+..-.....++...|+.+.+.+.+..+.
T Consensus 421 ------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 421 ------GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred ------CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 233333333222111 2212222233566778899888888776654
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.97 E-value=6.9e-08 Score=94.22 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=112.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+....++++..+|+++.++..+|-.+...|++++|++..+++++++|++..++.. .+|++++++..+++
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666666666666666666666666777777777777777777776666544 56777777777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc---hhhhhhHHHHHHHHhhcCCccccc
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH---PEVYLNALGLLLRVYVRGELDVFG 152 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~---~~~~~Da~sLLwRL~l~G~~v~vg 152 (229)
+....+. + ...+..++..+...| ++++|++.|++.+.-. +..... ...+++.+..+++. .
T Consensus 459 al~~~P~-~----~~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~---------~ 521 (615)
T TIGR00990 459 CKKNFPE-A----PDVYNYYGELLLDQN-KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW---------K 521 (615)
T ss_pred HHHhCCC-C----hHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH---------h
Confidence 6663322 1 123344667777765 7777777777766542 111000 00111222222220 1
Q ss_pred ccHHHHHHHHHhhh-hccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhh
Q 026999 153 NRLKVLADCVADQA-NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICL 225 (229)
Q Consensus 153 ~rW~~la~~~~~~~-~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (229)
.++++-...+..-. -++...-.-.+....+...|+.+.+.+.++...+.+... ++ ...+...+++++.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~-~e----~~~a~~~~~a~~~ 590 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-GE----LVQAISYAEATRT 590 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH-HH----HHHHHHHHHHHHH
Confidence 12333333333211 122222234556778888999988888877766665431 22 5566666666654
No 8
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.88 E-value=4.7e-07 Score=73.84 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=87.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.+..++++...|.+..++..+|..+...|++++|++..+++++++|+++.+... .+|++++++..+++
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ 124 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 777888888888888888888888888888888888888888888888888888765544 68888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-. .+. ....+..++.+++..| ++++|...|++.+..
T Consensus 125 ~~~~~~--~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 125 AIEDPL--YPQ-PARSLENAGLCALKAG-DFDKAEKYLTRALQI 164 (234)
T ss_pred HHhccc--ccc-chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 875211 111 2335566888888886 888888888877765
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=6.8e-08 Score=82.17 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=96.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCC--HHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCC--FKEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr--~~egi~~ 72 (229)
++..++....++++..+|+++....++|..+...|++++|....++|++++|+|+..+.. ..|+ .++++..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 345777888899999999999999999999999999999999999999999999988776 3466 5999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++.. .+|-. .-.+..+|..+++.| +|++|+..|++.+..
T Consensus 133 l~~al~----~dP~~-~~al~~LA~~~~~~g-~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 133 IDKALA----LDANE-VTALMLLASDAFMQA-DYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHH----hCCCC-hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 999988 44431 234457999999997 999999999998876
No 10
>PRK11906 transcriptional regulator; Provisional
Probab=98.79 E-value=5.6e-08 Score=92.04 Aligned_cols=121 Identities=10% Similarity=0.076 Sum_probs=99.1
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
+...+++.+.|++..+|.|+++++++|+++.-.|+++.|....+||++||||.+-++-. +.|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999876655 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHH-HHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHH
Q 026999 77 SSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL-~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~ 136 (229)
.+ ++|+-..-..=-+-+ .|... ..|+++++|-+.... ..-++++|..
T Consensus 399 lr----LsP~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~ 446 (458)
T PRK11906 399 LQ----LEPRRRKAVVIKECVDMYVPN--PLKNNIKLYYKETES-------ESHRVIIDNI 446 (458)
T ss_pred hc----cCchhhHHHHHHHHHHHHcCC--chhhhHHHHhhcccc-------ccchhhHHHH
Confidence 99 898755443333444 66674 589999999664433 3355677754
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.78 E-value=6.8e-08 Score=99.65 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=101.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.++++...++++...|+ +-++..+|.++.+.|++++|++..++|++++|+++-++.. ..|++++++..++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999999996 8889999999999999999999999999999999987776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|- ....++++|.++...| ++++|++.|++.+..
T Consensus 668 ~AL~----l~P~-~~~a~~nLA~al~~lG-d~~eA~~~l~~Al~l 706 (987)
T PRK09782 668 RAHK----GLPD-DPALIRQLAYVNQRLD-DMAATQHYARLVIDD 706 (987)
T ss_pred HHHH----hCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 9998 4443 2357789999999997 999999999999876
No 12
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.78 E-value=1.1e-07 Score=85.25 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+...++....+++..+|+++.++..+|..+...|++++|++..++||+++|+++.++.. ..|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4788888888999999999999999999999999999999999999999999999888776 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|-.+....|. .+. ... +++++|++.|.+.+..
T Consensus 157 ~al~----~~P~~~~~~~~~-~l~-~~~-~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 157 AFYQ----DDPNDPYRALWL-YLA-ESK-LDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHH----hCCCCHHHHHHH-HHH-Hcc-CCHHHHHHHHHHHHhh
Confidence 9987 333323334343 222 233 4899999999776543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.74 E-value=3e-07 Score=91.03 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=104.0
Q ss_pred CChhH----HHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDL----CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~----~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
|+.+. ++...++++...|+++.++..+|.++.+.|++++|+...+++++++|+++.+... ..|++++|++
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55553 7888999999999999999999999999999999999999999999999876655 6899999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc----hhhhhhHHHHH--------
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH----PEVYLNALGLL-------- 139 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~----~~~~~Da~sLL-------- 139 (229)
.+++... .+|... ......|..+...| ++++|++.|++.+...-. ..... ...+.++.+..
T Consensus 340 ~l~~al~----~~P~~~-~~~~~~a~al~~~G-~~deA~~~l~~al~~~P~-~~~~~~~ea~~~~~~~~~~~~~~~~~~~ 412 (656)
T PRK15174 340 EFVQLAR----EKGVTS-KWNRYAAAALLQAG-KTSEAESVFEHYIQARAS-HLPQSFEEGLLALDGQISAVNLPPERLD 412 (656)
T ss_pred HHHHHHH----hCccch-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhChh-hchhhHHHHHHHHHHHHHhcCCccchhh
Confidence 9998887 343322 22223577777886 999999999988766311 11111 12245555555
Q ss_pred HHHhhcCCc
Q 026999 140 LRVYVRGEL 148 (229)
Q Consensus 140 wRL~l~G~~ 148 (229)
|..+|.|-+
T Consensus 413 W~~~~~~~~ 421 (656)
T PRK15174 413 WAWEVAGRQ 421 (656)
T ss_pred HHHHHhccc
Confidence 888888854
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=3.1e-07 Score=80.75 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=94.4
Q ss_pred CChhHHHHHHHhhCC--CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp--~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.+.+.++++.. ..+.++.++.++|-.+...|+.++|++..++||+++|+|+.+.-. ..|+.+++...+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 667777777777543 346788999999999999999999999999999999999987766 689999999998
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
+......+. +|. +|+.+|..++.+| ++++|+.+|.+.+... ++ .+..++.-+..|....-.
T Consensus 204 ~~~~~~~~~-~~~----~~~~la~~~~~lg-~~~~Al~~~~~~~~~~--p~---d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 204 KRLLKAAPD-DPD----LWDALAAAYLQLG-RYEEALEYLEKALKLN--PD---DPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHH-HT-SCC----HCHHHHHHHHHHT--HHHHHHHHHHHHHHS--TT----HHHHHHHHHHHT-----
T ss_pred HHHHHHCcC-HHH----HHHHHHHHhcccc-cccccccccccccccc--cc---cccccccccccccccccc
Confidence 888776544 332 4567999999997 9999999999977642 22 244455555555544433
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=7.3e-07 Score=69.33 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=89.1
Q ss_pred HHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCC
Q 026999 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSC 83 (229)
Q Consensus 10 ~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~ 83 (229)
+..+++...|.+..+...+|..+...|++++|.+..++++.++|+++.++.. .+|++++++..+++.....+.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~- 83 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD- 83 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 4678888899988889899999999999999999999999999999988877 699999999999999874332
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 84 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 84 ~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+ .-.+.++|.+++..| ++++|+..|++.+..
T Consensus 84 ~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 D----PRPYFHAAECLLALG-EPESALKALDLAIEI 114 (135)
T ss_pred C----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 1 223346999999997 999999999888776
No 16
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=3.3e-07 Score=91.47 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=121.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|++.-+...++-+|.+.+++++|...++++|..+|+++-+++. ..|+++||++..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999988 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc----hhhhhhHHHHHHHHhhcCCccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH----PEVYLNALGLLLRVYVRGELDV 150 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~----~~~~~Da~sLLwRL~l~G~~v~ 150 (229)
+... .+|- ....+=-+|..+.+.| +.++|...|++.|.... +++-- ..++---+.+|=||+.+|..++
T Consensus 179 ~~~~----~~p~-~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (694)
T PRK15179 179 RLSR----QHPE-FENGYVGWAQSLTRRG-ALWRARDVLQAGLDAIG--DGARKLTRRLVDLNADLAALRRLGVEGDGRD 250 (694)
T ss_pred HHHh----cCCC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhC--cchHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence 9997 3332 1233334778878887 99999999999988742 22211 1112233678889999988654
Q ss_pred ccccHHHHHHH
Q 026999 151 FGNRLKVLADC 161 (229)
Q Consensus 151 vg~rW~~la~~ 161 (229)
+.-|.-.+-..
T Consensus 251 ~~~~~~~~~~~ 261 (694)
T PRK15179 251 VPVSILVLEKM 261 (694)
T ss_pred CceeeeeHHHH
Confidence 45555444333
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.63 E-value=4.8e-07 Score=88.39 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.++...++++..+|.++..+..+|..+.+.|++++|+...+++|+++|+++.++.. ..|++++|+..++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4888999999999999999988888889999999999999999999999999999877666 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++....+. . ...+-.+|..++.+| ++++|+..|++.+..
T Consensus 424 kal~l~P~---~--~~~~~~la~~~~~~g-~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 424 KSIDLDPD---F--IFSHIQLGVTQYKEG-SIASSMATFRRCKKN 462 (615)
T ss_pred HHHHcCcc---C--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 99873322 1 122335888888887 999999999887764
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=2.1e-07 Score=75.13 Aligned_cols=78 Identities=9% Similarity=-0.172 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.+.....+++..+|.++.++..+|.++...|+|++|+...++|++++|+++.+++. ..|++++|+..++
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999987 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 117 ~Al~ 120 (144)
T PRK15359 117 TAIK 120 (144)
T ss_pred HHHH
Confidence 9988
No 19
>PRK11906 transcriptional regulator; Provisional
Probab=98.60 E-value=5.8e-07 Score=85.24 Aligned_cols=110 Identities=13% Similarity=-0.005 Sum_probs=88.6
Q ss_pred hhHHHHHHHhhC---CCCCCchhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCChhhHHH------hhCC
Q 026999 4 PDLCFDIIHQVL---PYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHA------HDCC 65 (229)
Q Consensus 4 ~~~~~~~~~ral---p~~~~~~~~~g~~AF~L~e~---------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr 65 (229)
..+++....|++ |.+|+++-+++++||.+... ....+|.+.++||++++|+|++|+.. +.|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 356788899999 99999999999999987764 24556889999999999999999988 7999
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.|+.+++++.. +||-...-. -=.|+.+...| +.++|++..++.++.
T Consensus 354 ~~~a~~~f~rA~~----L~Pn~A~~~-~~~~~~~~~~G-~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKI----HSTDIASLY-YYRALVHFHNE-KIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhh----cCCccHHHH-HHHHHHHHHcC-CHHHHHHHHHHHhcc
Confidence 9999999999988 666433222 22455555555 999999999996655
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.59 E-value=1.5e-06 Score=84.97 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=123.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+-+.+.+.-+|++...|..+.++..+|-+|-+.|+.++|+....+||.++|+.+.++.. ++|.+++|+.+.+.
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999988 89999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcc-ccccc
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELD-VFGNR 154 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v-~vg~r 154 (229)
+..-.+. |-..|+ .+|..|-.+| .+++|+..|...|+- . .. .-||.|= .|..- ..|+.
T Consensus 380 al~v~p~---~aaa~n--NLa~i~kqqg-nl~~Ai~~YkealrI--~-P~------fAda~~N------mGnt~ke~g~v 438 (966)
T KOG4626|consen 380 ALEVFPE---FAAAHN--NLASIYKQQG-NLDDAIMCYKEALRI--K-PT------FADALSN------MGNTYKEMGDV 438 (966)
T ss_pred HHhhChh---hhhhhh--hHHHHHHhcc-cHHHHHHHHHHHHhc--C-ch------HHHHHHh------cchHHHHhhhH
Confidence 9985555 335675 6999988886 999999999999887 1 21 3354432 23210 12333
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHh
Q 026999 155 LKVLADCVADQANWYLECHLDLLILWALA 183 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~~~al~ 183 (229)
=..+..+-....-.+ .|+|.|.=++..
T Consensus 439 ~~A~q~y~rAI~~nP--t~AeAhsNLasi 465 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINP--TFAEAHSNLASI 465 (966)
T ss_pred HHHHHHHHHHHhcCc--HHHHHHhhHHHH
Confidence 333444433333344 499999876665
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.58 E-value=8.2e-07 Score=79.56 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=93.1
Q ss_pred ChhHHHHHHHhhCC---CCC-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 3 RPDLCFDIIHQVLP---YNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 3 ~~~~~~~~~~ralp---~~~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
..+.++..+.+++. ..| ..+-.+...|.++...|++++|+...++|++++|+++.++.. ..|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34567778888884 444 346778889999999999999999999999999999998888 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++.. .+|- ....|..+|..++..| ++++|++.|++.+..
T Consensus 121 ~~~Al~----l~P~-~~~a~~~lg~~l~~~g-~~~eA~~~~~~al~~ 161 (296)
T PRK11189 121 FDSVLE----LDPT-YNYAYLNRGIALYYGG-RYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHH----hCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 999988 4543 2345567999999987 999999999999876
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.54 E-value=1.6e-05 Score=71.99 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
++..+|..+...|++++|++..+++++++|.+..+... .+|++++++..+++..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 34444444444455555555555554444444433333 3444444444444443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.53 E-value=4.6e-06 Score=82.69 Aligned_cols=113 Identities=10% Similarity=0.044 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHH----HHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD----AEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~----Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
.|+.+.+.....+++...|+++.++..+|..+.+.|++++ |++..+++++++|+++-++.. .+|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3677778888888888888888888888888888888875 788888888888888766666 678888888
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+++.... +|..+ -.+-+++..+...| ++++|++.|++.+..
T Consensus 305 ~~l~~al~l----~P~~~-~a~~~La~~l~~~G-~~~eA~~~l~~al~~ 347 (656)
T PRK15174 305 PLLQQSLAT----HPDLP-YVRAMYARALRQVG-QYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHh----CCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 888888772 33212 23335788888876 888888888776654
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.48 E-value=2.4e-05 Score=70.97 Aligned_cols=111 Identities=9% Similarity=-0.029 Sum_probs=75.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH----HH-------hhCCHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ----HA-------HDCCFKEAV 70 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~----Ha-------~~Gr~~egi 70 (229)
|+.+.++....+++...|.+..++..++.++...|++++|++..++++..+|++.... +. .+|++++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6777777777777776666677777777777777888888877777777777664310 00 467778888
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
..+++..+. +|. ....+..++..+...| ++++|+++|++.+.
T Consensus 201 ~~~~~al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~ 242 (389)
T PRK11788 201 ALLKKALAA----DPQ-CVRASILLGDLALAQG-DYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHhH----CcC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 777777762 222 1234445777777775 77888877776654
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.48 E-value=1.7e-05 Score=83.08 Aligned_cols=113 Identities=11% Similarity=0.129 Sum_probs=95.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH----------------H---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH----------------A--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H----------------a--- 61 (229)
.|+.+.+....++++..+|+++.++..+|.++...|++++|++..++|++++|++....+ +
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999998763210 1
Q ss_pred -hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 -HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 -~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++|+..++++...-+. + ...+-.+|..++..| ++++|++.|++.+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~-~----~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNT-D----SYAVLGLGDVAMARK-DYAAAERYYQQALRM 414 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-C----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 689999999999999884333 1 122336899999987 999999999998876
No 26
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.44 E-value=1.7e-05 Score=71.13 Aligned_cols=204 Identities=11% Similarity=0.048 Sum_probs=119.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh-H----HH-----hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS-Q----HA-----HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA-~----Ha-----~~Gr~~egi 70 (229)
.|+.+.+....++++...|++++++.++|-++.+.|++++|++..++++.+.|.++-. . |. .+|++++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 4889999999999999999999999999999999999999999999999999865321 1 12 799999999
Q ss_pred HHHHHchhhccCCCCcchhhhH-HHHHHHHHhCCCCHHHHHHH--HHhhchhhccCCCCCchhhhhhHHHHHHHHhhc-C
Q 026999 71 QFMEECSSTWSSCSSFMYTHNW-WHVALCYLEGHSPMRKVLEI--YDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR-G 146 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~-WHlAL~~l~~gg~~d~Al~~--yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~-G 146 (229)
+.+++....-....+.....+. +++....++ |..+.+.++ ......+.. ++ ......+.. .-|..+. |
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~w~~~~~~~~~~~--~~--~~~~~~~~~--~a~~~~~~~ 278 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELA--GHVDVGDRWEDLADYAAWHF--PD--HGLAFNDLH--AALALAGAG 278 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhc--Cc--ccchHHHHH--HHHHHhcCC
Confidence 9999985321111111111132 555555444 243433333 211111210 11 111122322 1122221 1
Q ss_pred CcccccccHHHHHHHHHh---hhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHH
Q 026999 147 ELDVFGNRLKVLADCVAD---QANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQEL 212 (229)
Q Consensus 147 ~~v~vg~rW~~la~~~~~---~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~ 212 (229)
.....-...+.+...... ........-..+-.+++..+.|+.+.+-++|...-..+...||+..|+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~ 347 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQR 347 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 100011222222222221 111122234445556666788998888888887778887888877665
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.43 E-value=2.8e-06 Score=82.53 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+..++....++++...|++..++..+|..+...|++++|++..+++++.+|+++.+... ..|+ .+++.+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988877 6788 88999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+.....+. ++ ..+-.++..+...| ++++|+++|++.+...
T Consensus 828 ~~~~~~~~-~~----~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 828 KALKLAPN-IP----AILDTLGWLLVEKG-EADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhhCCC-Cc----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 99875443 22 23346888889987 9999999999999874
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.40 E-value=7.4e-06 Score=66.71 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP--~dawA~Ha------~~Gr~~egi~~ 72 (229)
.|+.+.++....+++...|.++.++..++..+...|++++|++..++++...+ ........ ..|++++++..
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 48899999999999999999999999999999999999999999999998753 33222222 78999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.....+. + .-.+..+|..+...| ++++|+..+++.+..
T Consensus 158 ~~~~~~~~~~-~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 158 LTRALQIDPQ-R----PESLLELAELYYLRG-QYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHhCcC-C----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999874333 1 124457899999987 999999999887765
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.39 E-value=2.4e-05 Score=81.99 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=121.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++...++++..+|++++++..+|..+...|++++|++..+++++++|+++-++.+ .+|+.+++++.++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999877655 4677777777766
Q ss_pred Hchh-hccC------------------------------------CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSS-TWSS------------------------------------CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~-~w~~------------------------------------~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+... .|+. .++....+ --+|..+++.| ++++|++.|++.+
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~--~~La~~~~~~g-~~~~A~~~y~~al 630 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID--LTLADWAQQRG-DYAAARAAYQRVL 630 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH--HHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 5421 1111 00111112 23788888886 9999999998888
Q ss_pred hhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHH
Q 026999 118 WKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLK 196 (229)
Q Consensus 118 ~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~ 196 (229)
... +. .. ++---|-++....- +.++-......-.. .+..+..-...+.++...|+.+.+.++++
T Consensus 631 ~~~--P~---~~----~a~~~la~~~~~~g------~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 631 TRE--PG---NA----DARLGLIEVDIAQG------DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HhC--CC---CH----HHHHHHHHHHHHCC------CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 752 21 12 22222222222211 22222222222111 11222233344667778999999998888
Q ss_pred HHHHHhh
Q 026999 197 GLKSRHS 203 (229)
Q Consensus 197 ~~~~~~~ 203 (229)
.+.....
T Consensus 696 ~al~~~~ 702 (1157)
T PRK11447 696 RLIPQAK 702 (1157)
T ss_pred HHhhhCc
Confidence 8776543
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.37 E-value=2.9e-05 Score=75.49 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=64.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|++..++..+|..+...|++++|++..++++..+|++..+... ..|++++++..+++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555556666655555555555555555666666666666666666666666554443 46666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
.... +|. ....+..++..++..| ++++|++.|++.+.
T Consensus 355 ~~~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 355 ALGL----DPD-DPAALSLLGEAYLALG-DFEKAAEYLAKATE 391 (899)
T ss_pred HHhc----CCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence 6542 221 1223334666666665 77777777766554
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.34 E-value=7.6e-07 Score=78.26 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|+++.+...+++.+.++|+++++.+..++.....|+|+..+.. ..|++++|+.+++
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 4899999999999999999999999999999999999999999999988888888766555 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.....+. + +. ...|+|.++...| +.++|++++.+...
T Consensus 239 ~~~~~~p~-d---~~-~~~~~a~~l~~~g-~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPD-D---PL-WLLAYADALEQAG-RKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-----HH-HHHHHHHHHT------------------
T ss_pred cccccccc-c---cc-ccccccccccccc-cccccccccccccc
Confidence 99884444 2 22 2248999988886 99999999976543
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.33 E-value=1.6e-06 Score=59.73 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
.|+.++++...++++..+|+++.++..+|.++...|++++|++..+++++++|+||
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 37788888888888888888888888888888888888888888888888888875
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.26 E-value=2.2e-05 Score=81.39 Aligned_cols=111 Identities=11% Similarity=-0.017 Sum_probs=81.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.....+++...|++......++..+...|++++|+...++|++++|+ +-++.. ..|++++++.++++
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888887777777777777766677778888888888888888885 544443 68888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|-.+ -.+-.+|.++.+.| ++++|++.|++.+..
T Consensus 635 AL~l----~Pd~~-~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l 672 (987)
T PRK09782 635 ALEL----EPNNS-NYQAALGYALWDSG-DIAQSREMLERAHKG 672 (987)
T ss_pred HHHh----CCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 8773 33211 22236787778876 888888888887765
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.25 E-value=2.5e-05 Score=78.66 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=88.8
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++++...++.|..|....++..+|..+...|++++|++..+++|+++|+++.+... .+|++++++..+++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888888888888778888888888888888889999999999999999988877666 68888999988888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. ... +-.+|..+...| ++++|+..|++.+..
T Consensus 109 ~l~~~P~----~~~--~~~la~~l~~~g-~~~~Al~~l~~al~~ 145 (765)
T PRK10049 109 LVSGAPD----KAN--LLALAYVYKRAG-RHWDELRAMTQALPR 145 (765)
T ss_pred HHHhCCC----CHH--HHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 8774332 122 334777777776 888898888888776
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=8.3e-06 Score=81.59 Aligned_cols=97 Identities=9% Similarity=-0.119 Sum_probs=84.9
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
.+|.++-++.++|-++++.|.|++|+..-++++++.|++.-|.+. .+++++||+...++..+.=++ | ...|
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~--~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-S--AREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-C--HHHH
Confidence 367788999999999999999999999999999999999999998 799999999999999883333 2 2334
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+ ++|.+..+.| +|++|+++|++.+.+
T Consensus 158 ~--~~a~~l~~~g-~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 158 L--LEAKSWDEIG-QSEQADACFERLSRQ 183 (694)
T ss_pred H--HHHHHHHHhc-chHHHHHHHHHHHhc
Confidence 4 6999989997 999999999999975
No 36
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.25 E-value=1.1e-05 Score=79.01 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=117.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|..+.+..+-.+++..+|+.+-+++.+|-++.+.|.+++|....++||.+.|+.+.|+-. ..|+..+|+.-.++
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 566777888888888889988999999999999999999999999999999999988887 78999999999999
Q ss_pred chhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 76 CSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 76 ~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
++. .||- --.|+ .+|-.|-+.| ++.+|+.-|++.+-- |.+. .... +-||--|+...-+.|...|
T Consensus 448 AI~----~nPt~AeAhs--NLasi~kDsG-ni~~AI~sY~~aLkl---kPDf--pdA~---cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 448 AIQ----INPTFAEAHS--NLASIYKDSG-NIPEAIQSYRTALKL---KPDF--PDAY---CNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHh----cCcHHHHHHh--hHHHHhhccC-CcHHHHHHHHHHHcc---CCCC--chhh---hHHHHHHHHHhcccchHHH
Confidence 988 6664 33564 5999988886 999999999887754 2332 2112 4466667776555455677
Q ss_pred HHHHHHHHHhhhhc
Q 026999 155 LKVLADCVADQANW 168 (229)
Q Consensus 155 W~~la~~~~~~~~~ 168 (229)
-++|........+.
T Consensus 513 ~~kl~sivrdql~~ 526 (966)
T KOG4626|consen 513 MKKLVSIVRDQLEK 526 (966)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888777766543
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=1.7e-05 Score=67.53 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=86.1
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------h-------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------H------- 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~------- 62 (229)
.|+.+.+....++++..+|.++ .++..+|-++...|++++|+...+++++..|+++.+.-+ +
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 3788888888888888887765 466788888999999999999999999999988764222 1
Q ss_pred --hCCHHHHHHHHHHchhhccCCCCcchhhh--------------HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 --DCCFKEAVQFMEECSSTWSSCSSFMYTHN--------------WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 --~Gr~~egi~~le~~~~~w~~~~~~~~~H~--------------~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|++++++..+++....++... . .... ..-+|.+|+..| ++++|+..|.+.+..
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~-~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSE-Y-APDAKKRMDYLRNRLAGKELYVARFYLKRG-AYVAAINRFETVVEN 195 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Confidence 2778888988888887666622 1 1111 124677888886 899999988888753
No 38
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=3.4e-05 Score=61.74 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=86.7
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~eg 69 (229)
|+...+...+++.+..+|+.+ .+.-.+|-.+.+.|++++|.+..+++++-.|++.+.--+ .+|++++|
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 566677777788888888774 455567778999999999999999999998887654333 69999999
Q ss_pred HHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 70 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 70 i~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+..++...+ +++ ..-.+.-.|..++..| ++++|+..|...|
T Consensus 105 l~~L~~~~~-----~~~-~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQIPD-----EAF-KALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhccC-----cch-HHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 999977432 444 4456778999999997 9999999998754
No 39
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=1.4e-05 Score=70.73 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=98.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|++.++...+.|+....|.||-++.-+|.+|.+.|++++|+...++|++|.|+++-.+.. -+|+.+.+...+..
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999988877 59999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.-.=.. ++. ..|| +|+.--..| ++++|.+|.+..+.+
T Consensus 194 a~l~~~a-d~~-v~~N---LAl~~~~~g-~~~~A~~i~~~e~~~ 231 (257)
T COG5010 194 AYLSPAA-DSR-VRQN---LALVVGLQG-DFREAEDIAVQELLS 231 (257)
T ss_pred HHhCCCC-chH-HHHH---HHHHHhhcC-ChHHHHhhccccccc
Confidence 9763333 223 4577 999988886 999999988776555
No 40
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.17 E-value=9.5e-06 Score=78.67 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=77.9
Q ss_pred hHHHHHHHhh--CCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 5 DLCFDIIHQV--LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 5 ~~~~~~~~ra--lp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
..+.+.++++ +|..+.++.++..+|+.....|++++|+...+||+++||+ +.++-. ++|++++|++.++++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666664 3457788899999999988999999999999999999994 554444 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhC
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEG 102 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~ 102 (229)
.+ .+|..++.+|||-..||-..
T Consensus 480 ~~----L~P~~pt~~~~~~~~f~~~~ 501 (517)
T PRK10153 480 FN----LRPGENTLYWIENLVFQTSV 501 (517)
T ss_pred Hh----cCCCCchHHHHHhccccccH
Confidence 99 89999999999999887544
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=2.8e-05 Score=53.08 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
+..+|..+.+.|++++|+...++++.++|++..++.. .+|++++|+..+++.... +|-.. -.++.++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL----DPDNA-KAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcch-hHHHHHHHH
Confidence 4567778888999999999999999999999755544 689999999999998873 32211 356689999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++..| ++++|.+.+...+..
T Consensus 78 ~~~~~-~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLG-KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHH-hHHHHHHHHHHHHcc
Confidence 99987 999999999876643
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.12 E-value=0.0002 Score=72.27 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=93.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+..++....++++...|.++.+...++..+.+.|++++|....+++++++|+++. +.. .+|++++++..++
T Consensus 62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999998 555 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+....-+. + ...+ -.++..+...+ +.++|++.+++..
T Consensus 141 ~al~~~P~-~--~~~~--~~la~~l~~~~-~~e~Al~~l~~~~ 177 (765)
T PRK10049 141 QALPRAPQ-T--QQYP--TEYVQALRNNR-LSAPALGAIDDAN 177 (765)
T ss_pred HHHHhCCC-C--HHHH--HHHHHHHHHCC-ChHHHHHHHHhCC
Confidence 99883333 1 1223 35788877765 9999999997544
No 43
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.10 E-value=2.2e-05 Score=76.13 Aligned_cols=110 Identities=9% Similarity=-0.037 Sum_probs=88.5
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--------CHHHHHHHHHHHHhh--CCCChhhHHH------hhCCH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--------QMSDAEEAAKKGLKI--NKHDCWSQHA------HDCCF 66 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--------~~d~Ae~~a~rAL~L--nP~dawA~Ha------~~Gr~ 66 (229)
+..+++++.++++..+|++++++..+++++.... ++.++.+.+++++++ .|.++.++-+ .+|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 3568899999999999999999999999876642 355677888888885 7777744333 79999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|.+.++++.. ++|....|+ -+|.++...| ++++|++.|.+.+.-
T Consensus 437 ~~A~~~l~rAl~----L~ps~~a~~--~lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 437 DEAYQAINKAID----LEMSWLNYV--LLGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHH----cCCCHHHHH--HHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 999999999998 776433443 5788888886 999999999998876
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.10 E-value=1.9e-05 Score=72.85 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=82.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+...+++...+++...|.++.++..+|.++...|+|++|+..+++||.++|+++.++.. ..|++++|+..+++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999988887 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+...-+. ....+.|-..+...+.
T Consensus 96 al~l~P~---~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 96 GASLAPG---DSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHH
Confidence 9883222 2245566555554553
No 45
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=3.3e-05 Score=70.62 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=97.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCH--HHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCF--KEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~--~egi~~ 72 (229)
+++.+++....+++..+|.+.-+....+.+|...| .++++.....++++.||++..++|- ..|+. ++.+++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 57889999999999999999999999999999998 7899999999999999999888885 45553 678999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++.. .+|- -.|.|.|.+...-..| +++++++.|++.|..
T Consensus 131 ~~kal~----~dpk-Ny~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 131 TRKILS----LDAK-NYHAWSHRQWVLRTLG-GWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHH----hCcc-cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 999987 4443 4689999998888886 999999999999886
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.08 E-value=0.00032 Score=59.59 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=81.1
Q ss_pred CCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCc
Q 026999 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSF 86 (229)
Q Consensus 16 p~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~ 86 (229)
|..+..+-.+...|-.+...|++++|....++++.++|++++...+ .+|++++|+..+++..+..++ ++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCc
Confidence 4455566778888888999999999999999999999999876544 689999999999999986666 333
Q ss_pred chhhhHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026999 87 MYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 87 ~~~H~~WHlAL~~l~~--------gg~~d~Al~~yd~~i~~ 119 (229)
.+ -.+.-++.+++.. | ++++|++.|++.+..
T Consensus 106 ~~-~a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 106 AD-YAYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRR 144 (235)
T ss_pred hH-HHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHH
Confidence 21 2344578887765 5 899999999998876
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=1.7e-05 Score=77.59 Aligned_cols=131 Identities=10% Similarity=0.141 Sum_probs=110.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+|.+.++...+|++-.+|.+.|++..+|.=+..+.+||.|...+|.||.++|++=.|+-- .+++.+.|.-++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999887776 69999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 143 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~ 143 (229)
+.. .||. -.-+-=|.+-++..+| +.|+|+.+|++.+--. +. .+.-...-+++|+-++
T Consensus 515 A~~----INP~-nsvi~~~~g~~~~~~k-~~d~AL~~~~~A~~ld--~k---n~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 515 AVE----INPS-NSVILCHIGRIQHQLK-RKDKALQLYEKAIHLD--PK---NPLCKYHRASILFSLG 571 (638)
T ss_pred hhc----CCcc-chhHHhhhhHHHHHhh-hhhHHHHHHHHHHhcC--CC---CchhHHHHHHHHHhhc
Confidence 998 6765 3344457788888887 9999999999988763 22 2333667777775443
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=2.9e-05 Score=65.99 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHH-HHhCC--HHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSL-LELGQ--MSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L-~e~g~--~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+|+.+.+....++++...|+++.++..+|.++ ...|+ +++|++..+++++++|+++-++.. ..|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999999999999999986 56677 599999999999999999988777 7999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
..++..+.-+.
T Consensus 166 ~~~~aL~l~~~ 176 (198)
T PRK10370 166 LWQKVLDLNSP 176 (198)
T ss_pred HHHHHHhhCCC
Confidence 99999874333
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=0.0001 Score=60.15 Aligned_cols=111 Identities=11% Similarity=0.073 Sum_probs=78.9
Q ss_pred ChhHHHHHHHhhCCCCCCc--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQE--DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~--~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~egi~ 71 (229)
++.++.+...+.+...+.+ .+.+..+|..+...|++++|+...++|+.+.|+. ++++.. ..|++++++.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456667777776666554 5777888999999999999999999999998874 344444 7999999999
Q ss_pred HHHHchhhccCCCCcchhh-----hHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 72 FMEECSSTWSSCSSFMYTH-----NWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H-----~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.++++....+. ....| +++.++..+..+| ++++|+..|++.+
T Consensus 94 ~~~~Al~~~~~---~~~~~~~la~i~~~~~~~~~~~g-~~~~A~~~~~~a~ 140 (168)
T CHL00033 94 YYFQALERNPF---LPQALNNMAVICHYRGEQAIEQG-DSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHhCcC---cHHHHHHHHHHHHHhhHHHHHcc-cHHHHHHHHHHHH
Confidence 99999874333 11233 3333333333876 8887777776544
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=3.6e-05 Score=59.74 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=74.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....+++++.+|.++.++..+|..+...|++++|++..+++++++|+++-.+.. ..|++++|+.+++
T Consensus 30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3788899999999999999999999999999999999999999999999999999877665 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
+..+..+.
T Consensus 110 ~al~~~p~ 117 (135)
T TIGR02552 110 LAIEICGE 117 (135)
T ss_pred HHHHhccc
Confidence 99884444
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=1.3e-05 Score=55.58 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC-CHHHHHHHHHHchh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC-CFKEAVQFMEECSS 78 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G-r~~egi~~le~~~~ 78 (229)
++..+..+|-.+...|+|++|+....+|++++|+++.++-. .+| ++++++..+++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777765555 566 57777777777665
No 52
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=8.9e-05 Score=61.43 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
.+.-+|+-+.+.|++++|++.++....++|+++-.+-. .+|++++||.....+.. ++|-.| .-..|.|.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----L~~ddp-~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----IKIDAP-QAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCc-hHHHHHHH
Confidence 44456677899999999999999999999999988777 79999999999999976 333212 33468999
Q ss_pred HHHhCCCCHHHHHHHHHhhchhh
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++|..| +.++|.+.|+..|.--
T Consensus 112 c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcC-CHHHHHHHHHHHHHHh
Confidence 999997 9999999999988873
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00017 Score=53.84 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
.+...|-.+.+.|++++|++..++++..+|+++....+ ..|++++++..++......+. +++. .-.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~-~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK-SPKA-PDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-CCcc-cHHHHH
Confidence 34567777899999999999999999999988543222 689999999999999875554 3222 234567
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.++...| ++++|+..|++.+..
T Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELG-DKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHHH
Confidence 889999987 999999999998876
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.93 E-value=0.0011 Score=61.84 Aligned_cols=186 Identities=9% Similarity=0.001 Sum_probs=123.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH---H----hhCCHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH---A----HDCCFKEAVQFME 74 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H---a----~~Gr~~egi~~le 74 (229)
||...+++...++....|+....+-..|-+..+.|++++|.+..+++.+..|++.-++. + .+|+++++++.++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999999999998876665555556678899999999999999999999999864322 2 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
...+.-++ + + ...-=++..++..| ++++|++++....... .....+..+.....|.=.+.... ....
T Consensus 178 ~l~~~~P~-~---~-~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~--~~~~ 244 (409)
T TIGR00540 178 KLLEMAPR-H---K-EVLKLAEEAYIRSG-AWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAM--ADEG 244 (409)
T ss_pred HHHHhCCC-C---H-HHHHHHHHHHHHHh-hHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 99884444 2 2 22223888889987 9999999997765442 11233333333333322231111 1233
Q ss_pred HHHHHHHHHhhhhc-cccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 155 LKVLADCVADQANW-YLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 155 W~~la~~~~~~~~~-~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
.+.+...|...... ...+=..+.++-.+...|+.+.+.++++..-+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 56666666654321 01122344456678888888888777766554
No 55
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.93 E-value=2.7e-05 Score=54.01 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINK 53 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP 53 (229)
.|+.+.++....+++..+|+++.++..+|.++.+.| ++++|++..++||++||
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 478999999999999999999999999999999999 79999999999999999
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00028 Score=62.62 Aligned_cols=130 Identities=10% Similarity=0.091 Sum_probs=102.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.||.+..+....+.+-.+|.+.+++..++-.+..+|+|.+|+...+||..++|+|.=++.. ..||++++..-+.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 3788888888888888899999999999999999999999999999999999999876666 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 142 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL 142 (229)
++.+-....+ . +.-| ++..++-.| |++.|.+++....... +. ...+.-...|++.+
T Consensus 159 qAl~L~~~~p-~-~~nN---lgms~~L~g-d~~~A~~lll~a~l~~--~a----d~~v~~NLAl~~~~ 214 (257)
T COG5010 159 QALELAPNEP-S-IANN---LGMSLLLRG-DLEDAETLLLPAYLSP--AA----DSRVRQNLALVVGL 214 (257)
T ss_pred HHHHhccCCc-h-hhhh---HHHHHHHcC-CHHHHHHHHHHHHhCC--CC----chHHHHHHHHHHhh
Confidence 9988666633 3 3334 777777766 9999999997766553 11 12244555666543
No 57
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=2.6e-05 Score=53.63 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhcc
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWS 81 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~ 81 (229)
.+|-.+.+.|+|++|++..+++++.+|+++.++.. .+|++++|+.++++.....+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46778999999999999999999999999999988 79999999999999977433
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.89 E-value=0.00076 Score=62.87 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=111.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
||.+.++....+. |..++.+.++..++- .-.+.|++++|.+..++|.+.+|++.++... .+|+++++++.+
T Consensus 98 Gd~~~A~k~l~~~-~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRN-ADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888777663 333444666656644 5589999999999999999999999876532 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhh----hHHHHHHHHhhcCCcc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYL----NALGLLLRVYVRGELD 149 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~----Da~sLLwRL~l~G~~v 149 (229)
+++.+.-++ + + ...-.++..|+..| ++++|++++....... . ....+.- .+...|.+......+.
T Consensus 177 ~~~~~~~P~-~---~-~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~---~--~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 177 DKLLEVAPR-H---P-EVLRLAEQAYIRTG-AWSSLLDILPSMAKAH---V--GDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHhcCCC-C---H-HHHHHHHHHHHHHH-hHHHHHHHHHHHHHcC---C--CCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999883333 2 2 33345788888887 9999999996655432 1 1122111 2222222221111110
Q ss_pred -cccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 150 -VFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 150 -~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
.....|+.+.....+ + +-.-+-++-++...|+.+.+.++++..-+
T Consensus 246 ~~l~~~w~~lp~~~~~---~---~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 246 EGLKRWWKNQSRKTRH---Q---VALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHhCCHHHhC---C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112344444433221 1 11223346677788888888877755443
No 59
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.88 E-value=4.1e-05 Score=72.76 Aligned_cols=62 Identities=16% Similarity=0.031 Sum_probs=56.5
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh---HHH------hhCCHHHHHHHHHHchh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA---~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.+|+++..+..+|.+|...|+|++|...+++||++||+++.+ +.. .+|+.+||++.+++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999855 333 79999999999999988
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=9.9e-05 Score=68.15 Aligned_cols=85 Identities=7% Similarity=-0.013 Sum_probs=71.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhC
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 102 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~ 102 (229)
|-.+...|+|++|++.+++||+++|+++-++.. ..|++++|+..+++++. .+|-.+ -.+..+|.+++.+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~----l~P~~~-~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE----LDPSLA-KAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCH-HHHHHHHHHHHHh
Confidence 445567899999999999999999999877655 79999999999999988 444322 2345689999999
Q ss_pred CCCHHHHHHHHHhhchh
Q 026999 103 HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 103 gg~~d~Al~~yd~~i~~ 119 (229)
| +|++|+..|++.+..
T Consensus 84 g-~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 E-EYQTAKAALEKGASL 99 (356)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 999999999998876
No 61
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00056 Score=56.15 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=79.4
Q ss_pred hHHHHHHHhhCCCCC--CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---hhHHH------hhCCHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 5 ~~~~~~~~ralp~~~--~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da---wA~Ha------~~Gr~~egi~~l 73 (229)
.-|-+.+.+.+|..+ .....+..+|..+...|++++|....++|++++|+.. ++++. ..|++++|+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 16 TVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356778888888654 5667788888899999999999999999999988754 34444 789999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCC--------------HHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSP--------------MRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~--------------~d~Al~~yd~~i~~ 119 (229)
+++.+.-+. .... +-.++.++...| + +++|++++.+.+..
T Consensus 96 ~~al~~~p~---~~~~--~~~lg~~~~~~g-~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 96 HQALELNPK---QPSA--LNNIAVIYHKRG-EKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHhCcc---cHHH--HHHHHHHHHHcC-ChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 999883222 1122 236788877765 5 45566666555543
No 62
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=5.2e-05 Score=55.05 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=55.8
Q ss_pred HhCCHHHHHHHHHHHHhhCCCC--hhhHH--H----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKHD--CWSQH--A----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 105 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~d--awA~H--a----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~ 105 (229)
++|+|++|+..+++.++.+|++ .-.+. + .+|++++++.++++ .+ .+. . . .-..+.+|.+++++| +
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~-~--~~~~~l~a~~~~~l~-~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-S-N--PDIHYLLARCLLKLG-K 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-C-H--HHHHHHHHHHHHHTT--
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-C-C--HHHHHHHHHHHHHhC-C
Confidence 4789999999999999999964 32333 2 79999999999998 32 222 1 1 223346899999997 9
Q ss_pred HHHHHHHHHh
Q 026999 106 MRKVLEIYDN 115 (229)
Q Consensus 106 ~d~Al~~yd~ 115 (229)
|++|++.|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.83 E-value=0.00018 Score=67.16 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=83.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhH--HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFI--FGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~--~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha------~~Gr~~egi 70 (229)
.|+.+++.+.+++++...|++... .-+........++.+.+++..+++++.+|+|+ ..+.+ .+|++++|.
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 378888999999999877766532 13444455556788889999999999999999 66555 689999999
Q ss_pred HHHHH--chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 71 QFMEE--CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 71 ~~le~--~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++. ... .+|-.. .+.|+|..+..+| +.++|.++|.+.+.+
T Consensus 356 ~~le~a~a~~----~~p~~~--~~~~La~ll~~~g-~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 356 DAFKNVAACK----EQLDAN--DLAMAADAFDQAG-DKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhHHhh----cCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 99994 444 233212 2458899988886 899999999876655
No 64
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.82 E-value=5.1e-05 Score=49.05 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.++.++|..+.+.|++++|++..+++|+++|+|+.+++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 467789999999999999999999999999999988764
No 65
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00016 Score=49.20 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+...+.....+++...|.++.++..+|..+...|++++|++..++++.++|.+..+... ..|+.+++...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3788899999999999889888899999999999999999999999999999999866554 6899999999998
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
+..+
T Consensus 93 ~~~~ 96 (100)
T cd00189 93 KALE 96 (100)
T ss_pred HHHc
Confidence 8766
No 66
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.79 E-value=7.1e-05 Score=52.34 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=47.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
++.+.++..+++++..+|+++.++..+|..+...|++++|.+..+++++++|+++-+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 677888888888888888888888888888888888888888888888888877654
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.78 E-value=0.0004 Score=70.91 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++..++|+++-.+...+.+-.+|-.+...|+|++|++..+++++++|+++-++.. ..|+.++++..++
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3788899999999994444455555555779999999999999999999999999877766 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHh--CCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~--~gg~~d~Al~~yd~~i~~ 119 (229)
+..+ .+|- +.+-+++.++. .+ ++.+|++.|++.+..
T Consensus 161 ~l~~----~dp~----~~~~l~layL~~~~~-~~~~AL~~~ekll~~ 198 (822)
T PRK14574 161 ELAE----RDPT----VQNYMTLSYLNRATD-RNYDALQASSEAVRL 198 (822)
T ss_pred Hhcc----cCcc----hHHHHHHHHHHHhcc-hHHHHHHHHHHHHHh
Confidence 9988 3432 22337777776 33 465699999998877
No 68
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00013 Score=65.85 Aligned_cols=135 Identities=11% Similarity=0.052 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 26 g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
=+-|=-+++.++|.+|.....+||+|+|+|+ ..+. ..|.++.||.-.+.++. .+|. +.--|==++++
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~-yskay~RLG~A 158 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALS----IDPH-YSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHh----cChH-HHHHHHHHHHH
Confidence 3445567889999999999999999999998 4444 78999999999999988 6665 45566779999
Q ss_pred HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~ 174 (229)
|+.+| +|++|++.|.+.+-- ++++ ..+..=+..+....|-.- .+..+.+=.+++.... .+++....|+
T Consensus 159 ~~~~g-k~~~A~~aykKaLel--dP~N-e~~K~nL~~Ae~~l~e~~---~~~~~~~~~d~~~~ig-~~Pd~~s~~~ 226 (304)
T KOG0553|consen 159 YLALG-KYEEAIEAYKKALEL--DPDN-ESYKSNLKIAEQKLNEPK---SSAQASGSFDMAGLIG-AFPDSRSMFN 226 (304)
T ss_pred HHccC-cHHHHHHHHHhhhcc--CCCc-HHHHHHHHHHHHHhcCCC---cccccccchhhhhhcc-CCccchhhhc
Confidence 99987 999999999888765 3333 234444666666555433 1112334444444433 2345555554
No 69
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00025 Score=52.90 Aligned_cols=82 Identities=11% Similarity=-0.025 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHhhCCCCCCc---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~e 68 (229)
.|+.+++.....+++..+|++ +.++..+|.++.+.|++++|....++++..+|++ ++++.. ..|+.++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence 378899999999999887765 4688889999999999999999999999999997 444444 6899999
Q ss_pred HHHHHHHchhhccC
Q 026999 69 AVQFMEECSSTWSS 82 (229)
Q Consensus 69 gi~~le~~~~~w~~ 82 (229)
++..+++.....+.
T Consensus 95 A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 95 AKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHCcC
Confidence 99999999886555
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0021 Score=61.84 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=91.9
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
++..+......+...+|.++-++.-.|=.+--.++|++|.+-+++|++|+|++++++-- .++++++.....+.+
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777888888666666666666688999999999999999999998876 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
...+++|+- +.+ ..|-.+.+++ +++.|++.||..|.-+
T Consensus 455 kkkFP~~~E---vy~--~fAeiLtDqq-qFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 455 KKKFPNCPE---VYN--LFAEILTDQQ-QFDKAVKQYDKAIELE 492 (606)
T ss_pred HHhCCCCch---HHH--HHHHHHhhHH-hHHHHHHHHHHHHhhc
Confidence 999999773 222 3677778886 9999999999999773
No 71
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00056 Score=54.14 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
.++...|.++-..|+.++|+...++|++..+.++-..-+ ..|++++++..+++....++.... ..-..=
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHH
Confidence 456778899999999999999999999988777643322 799999999999999987766221 222222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|+.....| ++++|++++-..+.+
T Consensus 80 f~Al~L~~~g-r~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLG-RPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 4888888887 999999999777765
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.68 E-value=0.00087 Score=64.01 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++......+...|+++|+.-+.+=.+.+.|++.+|.+..++++++.|+.+|..-. ..|+++|+|..|.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3677888888888888899999999999999999999999999999999999999888777 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
.....-+. .+ -.|==+|-.|-++| +..++...+-....-. + .+-.|..+|-|..=.... + --.
T Consensus 399 ~~~~~~p~----dp-~~w~~LAqay~~~g-~~~~a~~A~AE~~~~~----G-----~~~~A~~~l~~A~~~~~~-~-~~~ 461 (484)
T COG4783 399 RYLFNDPE----DP-NGWDLLAQAYAELG-NRAEALLARAEGYALA----G-----RLEQAIIFLMRASQQVKL-G-FPD 461 (484)
T ss_pred HHhhcCCC----Cc-hHHHHHHHHHHHhC-chHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHhccC-C-cHH
Confidence 99873333 12 23334899998987 8999999997766652 1 145677777776544321 0 134
Q ss_pred HHHHHHHH
Q 026999 155 LKVLADCV 162 (229)
Q Consensus 155 W~~la~~~ 162 (229)
|..+-+..
T Consensus 462 ~aR~dari 469 (484)
T COG4783 462 WARADARI 469 (484)
T ss_pred HHHHHHHH
Confidence 55554444
No 73
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.62 E-value=0.00015 Score=43.31 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
+.++..+|.++.+.|+|++|++..++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999999997
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.61 E-value=6.8e-05 Score=51.69 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=29.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
|+.+++....++++..+|+++.+...+|.++.+.|++++|++..++.+..+|+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 4555555555555555555555555555555555555555555555555555543
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.58 E-value=0.0011 Score=59.02 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=78.8
Q ss_pred hhHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 22 DFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 22 ~~~~g~~AF~L-~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.-.....|+.+ ...|+|++|...+++.+...|++.++--+ .+|++++|+..++.....++. ++. ..-.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~-~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPK-AADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-Ccc-hhHH
Confidence 35566777777 56799999999999999999999764444 699999999999999988887 434 3456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+|..+.++| ++++|+++|++.|..
T Consensus 220 l~klg~~~~~~g-~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKG-DTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 677999999987 999999999988876
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.00051 Score=55.99 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+|+.+.+.....+++...++ .++++..+|.++...|++++|++..++|++++|..+.++..
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 48899999999999776543 56789999999999999999999999999999999876544
No 77
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.00062 Score=66.91 Aligned_cols=109 Identities=15% Similarity=0.032 Sum_probs=86.2
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh-HHH-----hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS-QHA-----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA-~Ha-----~~Gr~~egi~~le~~ 76 (229)
+++.+..+-..++-.+|.+--+..=+|.++..+++++.||-..++|+++||.+.-- .|. ..|+.++++.+++++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 45677888888888888766666566667999999999999999999999999643 343 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.. .+|-- .|--.|.|..++.++ +|++|+..++.-.
T Consensus 550 ~~----ld~kn-~l~~~~~~~il~~~~-~~~eal~~LEeLk 584 (638)
T KOG1126|consen 550 IH----LDPKN-PLCKYHRASILFSLG-RYVEALQELEELK 584 (638)
T ss_pred Hh----cCCCC-chhHHHHHHHHHhhc-chHHHHHHHHHHH
Confidence 76 33321 133357899999997 9999999997643
No 78
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0095 Score=57.10 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=94.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
++++.+....+|++..+|.+.-+....|-=++|......|.+..|+|+++||.|-=|+-. ..+=+.=++=+.++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 567888899999999999999999999999999999999999999999999999666655 56667778888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+.. |-|.. .-+|=-++-+|..++ +.++|++-|.+.|...
T Consensus 424 A~~----~kPnD-sRlw~aLG~CY~kl~-~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 424 ALE----LKPND-SRLWVALGECYEKLN-RLEEAIKCYKRAILLG 462 (559)
T ss_pred HHh----cCCCc-hHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcc
Confidence 877 55542 356667888888886 8899999998888763
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.37 E-value=0.0027 Score=55.82 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=108.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~ 71 (229)
.|+.+.+.++-++++...|.++-+++.+|.=|+..|+|++|-...++|++. |+-+----+ ..|+++.+..
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 488899999999999999999999999999999999999999999999973 443322222 6999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHH--HHHHhhcCCcc
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGL--LLRVYVRGELD 149 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sL--LwRL~l~G~~v 149 (229)
.++++...=++ +.+.- =-+|-.+++.| +|-.|.-.+++.-.+. + ..|.|| .||+.=.=-+.
T Consensus 161 ~l~raL~~dp~---~~~~~--l~~a~~~~~~~-~y~~Ar~~~~~~~~~~----~-------~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 161 YLKRALELDPQ---FPPAL--LELARLHYKAG-DYAPARLYLERYQQRG----G-------AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHHHhCcC---CChHH--HHHHHHHHhcc-cchHHHHHHHHHHhcc----c-------ccHHHHHHHHHHHHHhccH
Confidence 99999883333 22222 13677788886 9999999998766552 1 244454 45555433333
Q ss_pred cccccHHHHHHHHHhhhh
Q 026999 150 VFGNRLKVLADCVADQAN 167 (229)
Q Consensus 150 ~vg~rW~~la~~~~~~~~ 167 (229)
+...||+......-|.+.
T Consensus 224 ~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 224 AAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHHHhCCCcH
Confidence 334678777666555443
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.31 E-value=0.027 Score=57.83 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=48.0
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
..|..+....-.+......|+|+.|....+++++.+|+++-+++. ..|+.++|+..++++.. . .|. ..+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~---p-~n~-~~~ 103 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS---S-MNI-SSR 103 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc---C-CCC-CHH
Confidence 345555455555555556666666666666666666665322112 45666666666666552 1 111 111
Q ss_pred hHHHH--HHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHV--ALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHl--AL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. -+ |..+...| +|++|+++|++.+..
T Consensus 104 ~--llalA~ly~~~g-dyd~Aiely~kaL~~ 131 (822)
T PRK14574 104 G--LASAARAYRNEK-RWDQALALWQSSLKK 131 (822)
T ss_pred H--HHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 1 13 33545554 666666666555554
No 81
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.0013 Score=54.47 Aligned_cols=77 Identities=9% Similarity=-0.110 Sum_probs=68.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++...-+-..-.+|.+.-....+|-++...|+|.+|+....+|+.|+||||.++-. ..|+.+++..-++.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778888888888887888877777778888999999999999999999999999988755 79999999999999
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
++.
T Consensus 129 Ai~ 131 (157)
T PRK15363 129 VVR 131 (157)
T ss_pred HHH
Confidence 986
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.29 E-value=0.061 Score=54.49 Aligned_cols=118 Identities=11% Similarity=0.002 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHhhCCCCC------CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--------hhhHHH-----
Q 026999 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--------CWSQHA----- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~------~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--------awA~Ha----- 61 (229)
.|+.+.++...++++.... ...+.+..+|.++.+.|++++|++..++++++.... .+....
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4888899888888886422 123567778889999999999999999999974321 111111
Q ss_pred -hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 -HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 -~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++|.+.+++..+.....++......+.-+|..++..| ++++|.+.+++.+.-
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG-DLDNARRYLNRLENL 641 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 689999999999998765443332222334344788888886 999999999887653
No 83
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00085 Score=46.09 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
|.+.|+|++|++..++++..+|+++.+... .+|++++|...+++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468899999999999999999999988887 79999999999999987
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.00098 Score=60.34 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=72.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+++..+++.=.+++..+|.++-++.+.|-+|.+.|+|+.|.+-++.||.+||+..=++-. -+|++++|++...+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 578889999999999999999999999999999999999999999999999999877777 59999999999999
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 175 aLe 177 (304)
T KOG0553|consen 175 ALE 177 (304)
T ss_pred hhc
Confidence 988
No 85
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.0073 Score=53.02 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=95.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--hhCC-----------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--HDCC----------- 65 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~---g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~~Gr----------- 65 (229)
|+.+.+...-+++++.+|..+++. -++|.++-..++|++|...+++.+.+.|+++.+--+ +.|.
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 788999999999999999877654 789999999999999999999999999999988766 3331
Q ss_pred --------------HHHHHHHHHHchhhccCCCCcch----------hh---hHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 66 --------------FKEAVQFMEECSSTWSSCSSFMY----------TH---NWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 66 --------------~~egi~~le~~~~~w~~~~~~~~----------~H---~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
..+++.-+++-++.+++.. ..+ .+ .-.+.|-+|+..| .|..|+.-++..|.
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~-~y~AA~~r~~~v~~ 203 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-YTTDATKRLVFLKDRLAKYELSVAEYYTKRG-AYVAVVNRVEQMLR 203 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHH
Confidence 3578888888888888733 211 11 2246899999997 99999999999887
Q ss_pred hh
Q 026999 119 KE 120 (229)
Q Consensus 119 ~~ 120 (229)
..
T Consensus 204 ~Y 205 (243)
T PRK10866 204 DY 205 (243)
T ss_pred HC
Confidence 74
No 86
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.19 E-value=0.00077 Score=40.53 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
.++..+|..+...|++++|+...++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567889999999999999999999999999985
No 87
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.18 E-value=0.0066 Score=57.24 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=85.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
++.+.++...++....+|+ +...+|-++..+++-.+|.+...++|..+|+|+-.++. .+|+.+.|+...++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5667788888887776665 44567777888899999999999999999999888877 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd 114 (229)
+.. +.|. ..-.|-.||.+|+.+| ++++|+....
T Consensus 260 av~----lsP~-~f~~W~~La~~Yi~~~-d~e~ALlaLN 292 (395)
T PF09295_consen 260 AVE----LSPS-EFETWYQLAECYIQLG-DFENALLALN 292 (395)
T ss_pred HHH----hCch-hHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 998 4543 2335667999999997 9999997763
No 88
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.16 E-value=0.0019 Score=57.58 Aligned_cols=81 Identities=11% Similarity=-0.034 Sum_probs=73.9
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~eg 69 (229)
|+.+++....++++..+|+.. .++..+|..+...|+|++|...+++.+...|+++++-.+ ..|+.+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 788899999999999898875 599999999999999999999999999999999888887 58999999
Q ss_pred HHHHHHchhhccC
Q 026999 70 VQFMEECSSTWSS 82 (229)
Q Consensus 70 i~~le~~~~~w~~ 82 (229)
+..+++.+..++.
T Consensus 237 ~~~~~~vi~~yP~ 249 (263)
T PRK10803 237 KAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHCcC
Confidence 9999999987766
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0011 Score=46.20 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
++...++|++|.+..+++++++|+++..+-. .+|++++|+..++++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4667788888888888888888887766655 57777777777777765
No 90
>PLN02789 farnesyltranstransferase
Probab=97.12 E-value=0.0051 Score=56.33 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=88.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH--HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~--d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+..++++.+.+++..+|.+..+....++++...|.. +++.....++|+++|+|.+|++- ..|++++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 457899999999999999998999999999888863 77889999999999999888887 7899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhC---CCCH----HHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPM----RKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~---gg~~----d~Al~~yd~~i~~ 119 (229)
+.++ .++. -.+.|.|.+.....+ | .+ ++.+..+++.|..
T Consensus 167 ~~I~----~d~~-N~sAW~~R~~vl~~~~~l~-~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 167 QLLE----EDVR-NNSAWNQRYFVITRSPLLG-GLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHH----HCCC-chhHHHHHHHHHHhccccc-cccccHHHHHHHHHHHHHh
Confidence 9988 4433 346677777654433 2 23 4677777777765
No 91
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.10 E-value=0.0061 Score=56.84 Aligned_cols=96 Identities=8% Similarity=0.031 Sum_probs=59.7
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
..|.++.++..+|-.+...|+.++|++..++++..+| |+-..-. ..|++++++..++++.+.-++ ++. .++
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~--l~l- 332 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPL--LWS- 332 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCC-CHH--HHH-
Confidence 3566777777777777777777777777777777444 3322222 457777777777777664444 211 121
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
-+|-.++..+ ++++|.+.|+..+..
T Consensus 333 -~lgrl~~~~~-~~~~A~~~le~al~~ 357 (398)
T PRK10747 333 -TLGQLLMKHG-EWQEASLAFRAALKQ 357 (398)
T ss_pred -HHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 2555666665 777777777777665
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.08 E-value=0.00079 Score=48.73 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=60.4
Q ss_pred CChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++...++++...|. ++-....+|-++-..|+|++|.+..++ +.++|.++....- ..|+++||+..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7888999999999998774 444555589999999999999999999 9999988655544 799999999998
Q ss_pred HHc
Q 026999 74 EEC 76 (229)
Q Consensus 74 e~~ 76 (229)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 863
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0016 Score=61.72 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=88.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHH-HHHHHhCCH-HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILA-FSLLELGQM-SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~A-F~L~e~g~~-d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|...++.-.+.-++...|..+-.+..+| -++.+.-.. ++|.+.++++|.+||.-.=|+-. +.|+.++||..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 4445555555555555666666666664 455565544 45999999999999999988887 999999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++....+++++ .|+ |+|.+.-... .++++++.|...++.
T Consensus 462 e~~L~~~~D~~----LH~--~Lgd~~~A~N-e~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLIIFPDVN----LHN--HLGDIMRAQN-EPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhccccH----HHH--HHHHHHHHhh-hHHHHHHHHHHHHhc
Confidence 99999888866 466 8999988886 999999999888876
No 94
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0055 Score=59.06 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=91.9
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------Ch--hhHHH-----hhCCHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DC--WSQHA-----HDCCFKEAVQ 71 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~------da--wA~Ha-----~~Gr~~egi~ 71 (229)
+.+....+.+....|.-+.++...|=+|.-.++++.|++....|++|.|. ++ ..+-+ .++++.+|+.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 34445555566667888888888999999999999999999999999999 42 22222 7899999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHH
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGL 138 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sL 138 (229)
.++++++-=+.|. --+--+|-+.+.+| +.++|+++|.+.+.-. || -.+++.+.||
T Consensus 525 Ll~KA~e~Dpkce-----~A~~tlaq~~lQ~~-~i~eAielFEksa~lA--rt----~~E~~~a~s~ 579 (606)
T KOG0547|consen 525 LLRKAIELDPKCE-----QAYETLAQFELQRG-KIDEAIELFEKSAQLA--RT----ESEMVHAYSL 579 (606)
T ss_pred HHHHHHccCchHH-----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--Hh----HHHHHHHHHH
Confidence 9999998333332 23345899999997 9999999999887663 33 3446666665
No 95
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.011 Score=53.54 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=86.5
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEE 75 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~ 75 (229)
+......+..+..+|+|+.---++|=+++.+|+++.|..+.++|+.|.|+++-..-. -+-...++...+.+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 344555666777799998888899999999999999999999999999999987776 13346788899999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.. ..|.-. ---|-+|..+++.| +|.+|+..+...+..
T Consensus 219 al~----~D~~~i-ral~lLA~~afe~g-~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 219 ALA----LDPANI-RALSLLAFAAFEQG-DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHh----cCCccH-HHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 987 333211 22356999999997 999999999887765
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.00 E-value=0.0053 Score=59.62 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=87.6
Q ss_pred CCChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----CCChhhHHH------
Q 026999 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-----KHDCWSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln-----P~dawA~Ha------ 61 (229)
.|+++++...+++++.. .|.-+-.+..++-.++-.+++++|+...++++++= ++++-.-+.
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 38888999998888874 22344677888889999999999999999999864 344222222
Q ss_pred ---hhCCHHHHHHHHHHchhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~---~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+++||.++.++++..-... ..+...-..||+|..|.+++ ++++|-.+|.+.+.-
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKDI 438 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Confidence 7999999999999996533111 11122345699999999987 999999999876544
No 97
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.97 E-value=0.023 Score=55.22 Aligned_cols=189 Identities=15% Similarity=0.114 Sum_probs=118.6
Q ss_pred CChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------ChhhHHH-----
Q 026999 2 GRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------DCWSQHA----- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~-------dawA~Ha----- 61 (229)
|.+.++...-++++.. +|..+-++..+|..+...|+|++|+..+++|++|-.. +.-+.+.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 4556666666666653 4456678999999999999999999999999998655 2222222
Q ss_pred --hhCCHHHHHHHHHHchhhcc----CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc---hhhh
Q 026999 62 --HDCCFKEAVQFMEECSSTWS----SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH---PEVY 132 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~----~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~---~~~~ 132 (229)
..+++++++..+.++..... ..++.. .+..=.+|-.|+..| +|++|.++|.+.|..-.+..+... -..+
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~-a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL-AKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHH-HHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 79999999999998865544 223232 344556999999997 999999999999987543222111 1112
Q ss_pred hhHHHHHHHHhhcCCcccccccHHHHHHHHHhh----hhccc-cchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 133 LNALGLLLRVYVRGELDVFGNRLKVLADCVADQ----ANWYL-ECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 133 ~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~----~~~~~-~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
-+-++.. .++... ..|..+....... .+++. +-+.=.-.+-++.+.|+.+.+.++...+-
T Consensus 413 ~~la~~~--~~~k~~-----~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAY--EELKKY-----EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH--HHhccc-----chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2222222 222222 2355555443332 22332 22222222446678899988888776655
No 98
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.02 Score=53.18 Aligned_cols=181 Identities=17% Similarity=0.093 Sum_probs=128.1
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
.+..++..+...+...|.+--.+-=.|=++++.+++++|.+..+++|.+.|++.-++.. +.|+++=++.+..+-
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 45677888888888899887666667889999999999999999999999999988877 899999999999888
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc--
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR-- 154 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r-- 154 (229)
..-=.. +|- ++=+++||.+-.+ +||=++.-|.+.++..- . .. -++-.-|-|...-| +.||-
T Consensus 351 LqmG~~-spe----Lf~NigLCC~yaq-Q~D~~L~sf~RAlstat---~---~~---~aaDvWYNlg~vaV--~iGD~nl 413 (478)
T KOG1129|consen 351 LQMGAQ-SPE----LFCNIGLCCLYAQ-QIDLVLPSFQRALSTAT---Q---PG---QAADVWYNLGFVAV--TIGDFNL 413 (478)
T ss_pred HHhcCC-ChH----HHhhHHHHHHhhc-chhhhHHHHHHHHhhcc---C---cc---hhhhhhhccceeEE--eccchHH
Confidence 762222 332 2335999999976 99999999998887631 1 10 12223344443333 34641
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 155 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
=..-......+-.+|....|.+- .--.+.|+.+.++.|+.+-++..
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLa--vL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLA--VLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHH--HHHhhcCchHHHHHHHHHhhhhC
Confidence 11222222333456777777763 33458899999999998877653
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0074 Score=53.92 Aligned_cols=110 Identities=20% Similarity=0.166 Sum_probs=88.8
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
+..-+...+.+.-...|...-+..+.|.-|+-+|.|++|++...+-|+=||+|.-..-- -+|+.-++|.-+-.-
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444444544444468889999999999999999999999999999999999743333 799999999999988
Q ss_pred hhhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 77 SSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+. |+..| .||-+|-.|+..| +|++|.=-|...|-.
T Consensus 147 L~~------F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 147 LDK------FMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLI 183 (289)
T ss_pred HHH------hcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHc
Confidence 883 44455 6777999999997 999999999887755
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.94 E-value=0.063 Score=51.57 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=96.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
.|....+.|++|+|+...+.-++..|+|+|-.-. ..++.++|++.++++....+. + ..++=.+|-.++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~----~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-S----PLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-c----cHHHHHHHHHHHh
Confidence 4556678999999999999999999999999988 799999999999999884333 1 2344459999999
Q ss_pred CCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHH
Q 026999 102 GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWA 181 (229)
Q Consensus 102 ~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~a 181 (229)
.| ++.+|+.+.++.+... +++ .+-|+-|+.......+. .=...=++-.
T Consensus 387 ~g-~~~eai~~L~~~~~~~--p~d--------------------------p~~w~~LAqay~~~g~~---~~a~~A~AE~ 434 (484)
T COG4783 387 GG-KPQEAIRILNRYLFND--PED--------------------------PNGWDLLAQAYAELGNR---AEALLARAEG 434 (484)
T ss_pred cC-ChHHHHHHHHHHhhcC--CCC--------------------------chHHHHHHHHHHHhCch---HHHHHHHHHH
Confidence 86 9999999998877662 221 22344444443331111 1112222334
Q ss_pred HhcCCCcHHHHHHHHHHHHHhhc
Q 026999 182 LANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 182 l~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
+..+|+.+.+...+...++..+.
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHhccC
Confidence 45577777777777777776654
No 101
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.88 E-value=0.0063 Score=49.87 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh-------C
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD-------C 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~-------G 64 (229)
.|+.+.+....++++...|+ .+.++..+|.++...|++++|++..++|+.++|+++.++-. .. |
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence 48899999999999865443 35788899999999999999999999999999999876533 33 4
Q ss_pred CHHHHHHHHHHchh
Q 026999 65 CFKEAVQFMEECSS 78 (229)
Q Consensus 65 r~~egi~~le~~~~ 78 (229)
+.++++...+++.+
T Consensus 128 ~~~~A~~~~~~A~~ 141 (172)
T PRK02603 128 DQDEAEALFDKAAE 141 (172)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555544
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.014 Score=59.92 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=90.6
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
+.+.+++|.+.+.++|..+|.|.||-.- ..|++.+|++.+.+..+.|+.+. .+++ ++|.+|++.| +|-
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~---dv~l--Nlah~~~e~~-qy~ 697 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE---DVWL--NLAHCYVEQG-QYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC---ceee--eHHHHHHHHH-HHH
Confidence 4678899999999999999999998766 89999999999999999998644 2332 5999999997 999
Q ss_pred HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHh----hhhccccchhhH
Q 026999 108 KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD----QANWYLECHLDL 176 (229)
Q Consensus 108 ~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~----~~~~~~~~F~d~ 176 (229)
.|+..|.+.+..-..++ -++-...|-|--.+- ++|++--+...+ .+.++..-||=.
T Consensus 698 ~AIqmYe~~lkkf~~~~-------~~~vl~~Lara~y~~------~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKN-------RSEVLHYLARAWYEA------GKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999998754222 234445555554442 235554444433 244556566543
No 103
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.82 E-value=0.011 Score=59.40 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=93.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH--HH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ--FM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~--~l 73 (229)
|..++++-.+..+--.+|..++.+.+.|-.++..|...+|.+...-||.+||+++-++++ ..|+..=+.. ++
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 455677777777777788999999999999999999999999999999999999999999 6777666665 88
Q ss_pred HHchhhccCCCCcchhhhHH-HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 74 EECSSTWSSCSSFMYTHNWW-HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~W-HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..+.+ ..|. .|=|| -+|-.+..+| +.++|.+-|+..+.-+
T Consensus 744 ~dalr----~dp~--n~eaW~~LG~v~k~~G-d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 744 SDALR----LDPL--NHEAWYYLGEVFKKLG-DSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHh----hCCC--CHHHHHHHHHHHHHcc-chHHHHHHHHHHHhhc
Confidence 88887 5553 56444 5788877786 9999999999998873
No 104
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.01 Score=46.97 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh--HHH-------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS--QHA-------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA--~Ha-------~~Gr~~e 68 (229)
+|+.+++...-++++..... -..+.-.+|.++...|++++|+...++++.-.|+|.|. +.. ..||++|
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 58999999999999986332 24577789999999999999999999999999997662 222 6899999
Q ss_pred HHHHHHHchh
Q 026999 69 AVQFMEECSS 78 (229)
Q Consensus 69 gi~~le~~~~ 78 (229)
|++++..+.-
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.81 E-value=0.073 Score=53.96 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHhhCCCCCC-c----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ-E----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~-~----~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------~~ 63 (229)
.|+.+.++...++++...+. + ..+...+|.++...|++++|+...++++++.+... ++... .+
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 47888999999888764332 2 24667888899999999999999999998755432 22211 69
Q ss_pred CCHHHHHHHHHHchhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~---~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|...++++...-...+. ......++-+|..++..| ++++|.+.+++.+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~ 602 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEV 602 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHh
Confidence 9999999999888654332210 111223445787888886 999999999887664
No 106
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.015 Score=56.74 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcch--hhhHHHHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMY--THNWWHVALCY 99 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~--~H~~WHlAL~~ 99 (229)
+|.=+..++.+..|++...+|++++|+||...|- ..+.+.+|+.+++.+...=...++--+ .-.+=.+++.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 4444666889999999999999999999999999 588999999999998622111111111 01222488888
Q ss_pred HhCCCCHHHHHHHHHhhchh
Q 026999 100 LEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 100 l~~gg~~d~Al~~yd~~i~~ 119 (229)
-.++ .|++|+.-|.+.+..
T Consensus 466 Rkl~-~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 466 RKLN-KYEEAIDYYQKALLL 484 (611)
T ss_pred HHHh-hHHHHHHHHHHHHHc
Confidence 8887 999999999999887
No 107
>PLN03077 Protein ECB2; Provisional
Probab=96.78 E-value=0.079 Score=53.93 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHH
Q 026999 179 LWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 179 ~~al~~ag~~~~~~~ll~~~~ 199 (229)
+-+++++|+.+++.++++.|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC
Confidence 567899999999999998873
No 108
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.76 E-value=0.13 Score=54.23 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHH
Q 026999 180 WALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 180 ~al~~ag~~~~~~~ll~~~~~ 200 (229)
-+++..|+.+.+.+++..|+.
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555555543
No 109
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.72 E-value=0.057 Score=53.74 Aligned_cols=109 Identities=9% Similarity=-0.044 Sum_probs=58.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++....+..+ .+...++.+.-++..+|++++|.++.++-.+ +.|+. ....+ ..|+.++|....
T Consensus 273 g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhccchHHHHHHH
Confidence 555666665555432 3445556666667777777777777766654 33432 23333 466666666666
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...+.--..+ ...+=-+-..|...| ++++|.++|++...+
T Consensus 349 ~~m~~~g~~~d----~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 349 AGLIRTGFPLD----IVANTALVDLYSKWG-RMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHhCCCCC----eeehHHHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 66554211111 111113444555554 666666666655443
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.68 E-value=0.011 Score=59.29 Aligned_cols=107 Identities=14% Similarity=0.255 Sum_probs=86.5
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CChhhHHH------hhCCHHHHHHHHHHch
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK-HDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP-~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+...++++..+|.|+.+...+|.=+.+.++.+.|...++++|++|| .++-++|- -++|+.+|+...+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999955 45777777 6999999999999999
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
..|.. | +--.|.-=|+-+. .+ |.++++..+...+
T Consensus 541 ~E~~~-N-~~l~~~~~~i~~~---~~-~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 541 EEFGD-N-HVLMDGKIHIELT---FN-DREEALDTCIHKL 574 (799)
T ss_pred HHhhh-h-hhhchhhhhhhhh---cc-cHHHHHHHHHHHH
Confidence 99988 3 3233432244443 44 7788887765544
No 111
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.67 E-value=0.21 Score=52.78 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=101.6
Q ss_pred CChhHHHHHHHhhCCC---CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-KHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~---~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln-P~dawA~Ha------~~Gr~~egi~ 71 (229)
|+.+.+++...+.... ...+.+.++.+--++..+|++++|+++.++..+.+ +.+.-...+ ..|++++|+.
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 4555555555555321 12234455555556677777777777777777665 223333333 5677777777
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh----------hhHHHHHHH
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY----------LNALGLLLR 141 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~----------~Da~sLLwR 141 (229)
.+++....= ..|- ...|=.+-..+...| ++++|+++++..+..... .+...+..+ -+|..++-.
T Consensus 636 lf~eM~~~G--v~PD--~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 636 IYDDMKKKG--VKPD--EVFFSALVDVAGHAG-DLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHcC--CCCC--HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777665411 1111 112223444445554 777777777776655331 111122222 234445555
Q ss_pred HhhcCCcccccccHHHHHHHHHhh--hhccccchhhH-------------HHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQ--ANWYLECHLDL-------------LILWALANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~--~~~~~~~F~d~-------------H~~~al~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
+.-.|+..++ .-|..|....... .+.-...|..+ -.+-+++..|+.+.+.+++..+.+..-.
T Consensus 710 M~~~g~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 710 IKSIKLRPTV-STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5545553221 2355544444221 11111111111 1245788899999999999999876544
No 112
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.63 E-value=0.099 Score=52.03 Aligned_cols=185 Identities=16% Similarity=0.067 Sum_probs=96.5
Q ss_pred ChhHHHHHHHhhCCC-CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 3 ~~~~~~~~~~ralp~-~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+.+.+....+..+.. .+.+..++..+--++..+|++++|++..++..+ | |...+.+ ..|+.++|++.+++
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444433332 244555566666667777777777777776543 2 3444444 67888888888877
Q ss_pred chhhccCCCCcchhhhHH-HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh----------hhHHHHHHHHhh
Q 026999 76 CSSTWSSCSSFMYTHNWW-HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY----------LNALGLLLRVYV 144 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~W-HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~----------~Da~sLLwRL~l 144 (229)
.... + ..|....+ .+--++...| ++++++++|+........+.+...+.-+ -+|..++=+
T Consensus 417 M~~~----g-~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--- 487 (697)
T PLN03081 417 MIAE----G-VAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--- 487 (697)
T ss_pred HHHh----C-CCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---
Confidence 6541 2 12222222 2333334444 7888888887665421111111122222 233343322
Q ss_pred cCCcccccccHHHHHHHHHhhh----------------hccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 145 RGELDVFGNRLKVLADCVADQA----------------NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 145 ~G~~v~vg~rW~~la~~~~~~~----------------~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
.+...+ ..-|..|......+. ++....+ .-.+-.++.+|+.+.+.++++.|++..
T Consensus 488 ~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y--~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 488 APFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY--VVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch--HHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 122111 234666665553321 1111122 222446889999999999999999875
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.019 Score=56.29 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=79.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhCCHHHHHHHHHHc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~Gr~~egi~~le~~ 76 (229)
|+++++...+.+++...|++..+.-+.=.++...+.|++|.+..++=..+.-++..-.|- ..++.+|++.-++.+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~ 105 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGL 105 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcc
Confidence 344555555555555555555555555555555555555554444333333333322222 355555555555544
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHH
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 156 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~ 156 (229)
.+ ++++ .-|+ -|-..+.+| +|++++++|. ++.. ++.....+.. -++|+-+--.. +++ |.
T Consensus 106 ~~----~~~~-ll~L---~AQvlYrl~-~ydealdiY~-~L~k----n~~dd~d~~~-r~nl~a~~a~l-----~~~-~~ 164 (652)
T KOG2376|consen 106 DR----LDDK-LLEL---RAQVLYRLE-RYDEALDIYQ-HLAK----NNSDDQDEER-RANLLAVAAAL-----QVQ-LL 164 (652)
T ss_pred cc----cchH-HHHH---HHHHHHHHh-hHHHHHHHHH-HHHh----cCCchHHHHH-HHHHHHHHHhh-----hHH-HH
Confidence 43 3322 2344 455555554 6666666663 2322 1111111110 01111111000 011 22
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHH
Q 026999 157 VLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGL 198 (229)
Q Consensus 157 ~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~ 198 (229)
...+... .+.+.+.||.. ..++..|+...+.++|+.-
T Consensus 165 q~v~~v~--e~syel~yN~A---c~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 165 QSVPEVP--EDSYELLYNTA---CILIENGKYNQAIELLEKA 201 (652)
T ss_pred HhccCCC--cchHHHHHHHH---HHHHhcccHHHHHHHHHHH
Confidence 2221111 23566677765 4777889998888888876
No 114
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.0029 Score=44.75 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
-...+..+|.++.+.|+|++|+...++|+.+....+ + .++. ....+..+|.++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------------------~----~~~~-~a~~~~~lg~~~~ 57 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG---------------------D----DHPD-TANTLNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------------------T----HHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC---------------------C----CCHH-HHHHHHHHHHHHH
Confidence 345778889999999999999999998887621111 0 0111 1334445777777
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
..| ++++|++.|++.+.-
T Consensus 58 ~~g-~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 58 RLG-DYEEALEYYQKALDI 75 (78)
T ss_dssp HTT-HHHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHhh
Confidence 776 788888888776653
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.53 E-value=0.031 Score=54.49 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh--hHHH----hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW--SQHA----HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw--A~Ha----~~Gr~~egi~~le 74 (229)
+|+...++..|.+++.+.|..+-++-+.|=+|-..|++.+|-+..+.|-.|++.|-+ .-.+ ..|+.++|...+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999964 3444 7999999999998
Q ss_pred Hchhhc-cCCCCcchhh-hHHH--HHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSSTW-SSCSSFMYTH-NWWH--VALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~~w-~~~~~~~~~H-~~WH--lAL~~l~~gg~~d~Al~~yd~~i 117 (229)
...+.= +..++..-.- +|.. .|.+|+..| ++-.|++.|....
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQG-DYGLALKRFHAVL 332 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 886522 1111111122 4444 578888886 9999999885433
No 116
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.51 E-value=0.12 Score=51.38 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=108.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---hhCCHHHHHHHHHHch
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---HDCCFKEAVQFMEECS 77 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~~Gr~~egi~~le~~~ 77 (229)
||+.+.+.+.|.+.+.-++..+.---++|...-...+|++|++..+.||.+.|||--.+-- -|-+...=-.+++.+.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5777788888888877666554444455555666778888888888888888887655443 1111111112223333
Q ss_pred hhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHH
Q 026999 78 STWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 156 (229)
Q Consensus 78 ~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~ 156 (229)
.-|+. .| ..| +|-=.|..+...| +|..|+.+.+..+... ..++...++-=.-++|+|-...-.. .+-+
T Consensus 134 ~LLql-~~--~~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~---~~~~s~~~~e~se~~Ly~n~i~~E~----g~~q 202 (700)
T KOG1156|consen 134 QLLQL-RP--SQRASWIGFAVAQHLLG-EYKMALEILEEFEKTQ---NTSPSKEDYEHSELLLYQNQILIEA----GSLQ 202 (700)
T ss_pred HHHHh-hh--hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHc----ccHH
Confidence 33333 21 234 5555888888886 9999999998877763 1345677788889999997765432 2233
Q ss_pred HHHHHHHhhhhccccchhhHHH-HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 157 VLADCVADQANWYLECHLDLLI-LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 157 ~la~~~~~~~~~~~~~F~d~H~-~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
...+.....-+.-..-|+-.|. +--+-.-++.+.+..+...+..+
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 3333333222221212222222 22223445556666555555543
No 117
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.47 E-value=0.062 Score=45.49 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=86.7
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--h--------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--H-------------- 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~-------------- 62 (229)
|+...+....++++..+|..+ -+..++|.++-..|+|+.|....++-+...|+++.+--+ +
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchh
Confidence 788888888888887766544 578899999999999999999999999999999987666 1
Q ss_pred ----hCCHHHHHHHHHHchhhccCCCCcch--------------hhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 63 ----DCCFKEAVQFMEECSSTWSSCSSFMY--------------THNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 63 ----~Gr~~egi~~le~~~~~w~~~~~~~~--------------~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++...+|+..++.-+..+++ +++.. .| -+..|.+|+..| .|..|+..|+..|..-
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~-S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~-~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPN-SEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG-KYKAAIIRFQYVIENY 171 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT--HHHHHHHHHHHHHHS
T ss_pred cccChHHHHHHHHHHHHHHHHCcC-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-cHHHHHHHHHHHHHHC
Confidence 12346788888888888888 43422 22 256899999997 9999999999988763
No 118
>PLN03077 Protein ECB2; Provisional
Probab=96.44 E-value=0.21 Score=50.87 Aligned_cols=176 Identities=13% Similarity=0.174 Sum_probs=103.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++....+. +.+...++.+--++...|+.++|.+..++..+ +.||.. ..-+ ..|+.+||..++
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHH
Confidence 5555555555554 34556666777788899999999999997776 556653 2222 689999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 153 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~ 153 (229)
++..+.... .|- ..|+ --+...+-..| ++++|.+++++.- . +.+......+++++ .+.|. ++.++
T Consensus 613 ~~M~~~~gi-~P~-~~~y-~~lv~~l~r~G-~~~eA~~~~~~m~---~-~pd~~~~~aLl~ac------~~~~~-~e~~e 677 (857)
T PLN03077 613 HSMEEKYSI-TPN-LKHY-ACVVDLLGRAG-KLTEAYNFINKMP---I-TPDPAVWGALLNAC------RIHRH-VELGE 677 (857)
T ss_pred HHHHHHhCC-CCc-hHHH-HHHHHHHHhCC-CHHHHHHHHHHCC---C-CCCHHHHHHHHHHH------HHcCC-hHHHH
Confidence 888754444 222 2232 22444445555 9999999998751 1 12222233344443 22332 22232
Q ss_pred cHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 154 RLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 154 rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
.+++...+-.++.... =+-..-.++.+|+-+.+.++.+.|++..
T Consensus 678 ---~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 678 ---LAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred ---HHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 2233333222222211 1112235788999999999999999874
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.014 Score=56.95 Aligned_cols=94 Identities=7% Similarity=0.073 Sum_probs=79.9
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNW 92 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~ 92 (229)
.|+-++..+|..+--.|+|++|....+.||..+|+|.--+.- -..|.+|||.-..++.. +-| |.+ .+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR--~R 501 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVR--VR 501 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeee--ee
Confidence 688888888888999999999999999999999999866655 57789999999999987 333 444 44
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
-.+|..++-+| .|.||++.|=+.|.-.
T Consensus 502 yNlgIS~mNlG-~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 502 YNLGISCMNLG-AYKEAVKHLLEALSMQ 528 (579)
T ss_pred hhhhhhhhhhh-hHHHHHHHHHHHHHhh
Confidence 47999999997 9999999998887764
No 120
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.29 E-value=0.0085 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
++.++|-.+.+.|++++|.+..+++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56788889999999999999999999999964
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.13 E-value=0.091 Score=41.78 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=66.0
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg 104 (229)
..++.+.+.+..++-+.-+|+.+++..+ .+|++++++..++......+. + -+..-...-+|..++..|
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~-~l~~~a~l~LA~~~~~~~- 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-P-ELKPLARLRLARILLQQG- 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-H-HHHHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999999887 589999999999999885533 2 223344556899999997
Q ss_pred CHHHHHHHHHh
Q 026999 105 PMRKVLEIYDN 115 (229)
Q Consensus 105 ~~d~Al~~yd~ 115 (229)
+|++|+.+++.
T Consensus 100 ~~d~Al~~L~~ 110 (145)
T PF09976_consen 100 QYDEALATLQQ 110 (145)
T ss_pred CHHHHHHHHHh
Confidence 99999999955
No 122
>PRK15331 chaperone protein SicA; Provisional
Probab=96.12 E-value=0.047 Score=45.65 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
...-+|+-+-+.|+|++|+..++--..++|.|+-=+-. .++++++|+....-+.--= ..+|. | + .|.|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~-p-~--f~agq 113 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYR-P-V--FFTGQ 113 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCC-c-c--chHHH
Confidence 33445566778999999999999999988888653333 8999999999887774311 23444 2 2 37999
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++.+| +.++|+..|...|..
T Consensus 114 C~l~l~-~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMR-KAAKARQCFELVNER 134 (165)
T ss_pred HHHHhC-CHHHHHHHHHHHHhC
Confidence 999997 999999999887774
No 123
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.03 E-value=0.085 Score=43.26 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 96 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA 96 (229)
-.+-..|.++.|.|+++.|.+.+-+||.+.|..+-+... .+|+.+++++-+.++.+--..- ..-.+|-+=.-+
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Confidence 456677889999999999999999999999999988887 7999999999999997632221 133566666788
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.|-.+| +-|.|..=|...-.-
T Consensus 123 ~lyRl~g-~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 123 LLYRLLG-NDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHhC-chHHHHHhHHHHHHh
Confidence 8887776 889999888665443
No 124
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.00 E-value=0.025 Score=54.05 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHD 55 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-nP~d 55 (229)
+|+.++++...++++..+|++. +++..+|.+|...|++++|++..++||++ ||..
T Consensus 88 lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 88 KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 5899999999999999999988 56999999999999999999999999998 4443
No 125
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.086 Score=54.33 Aligned_cols=116 Identities=8% Similarity=0.136 Sum_probs=88.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~---g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
||+...++-..+|++..+|...-++ |.+.+..-+.--|..|.....+|..+||+||-++.- +.|+++....
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 5788899999999999999766444 444443334446777999999999999999988765 7999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.++..= . +..+..+.+.-+|-+|-.+| +||+|...|-..+..
T Consensus 292 la~~ai~~t-~-~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 292 LAEHAIKNT-E-NKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhh-h-hhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHcc
Confidence 999887622 2 22346676677888888886 999999999776654
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.83 E-value=0.24 Score=48.43 Aligned_cols=137 Identities=16% Similarity=0.032 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 96 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA 96 (229)
|++..+|--+-..|++++|.+...+||+.+|+.+--+-. ..|++++|.++|+.+.. +..-.+.-| -=.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~~DRyiN-sK~a 269 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDLADRYIN-SKCA 269 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CChhhHHHH-HHHH
Confidence 677777888889999999999999999999999887766 79999999999999987 555555555 2356
Q ss_pred HHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH---------HHHhhcCCcccccccHHHHHHHHHhhhh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL---------LRVYVRGELDVFGNRLKVLADCVADQAN 167 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL---------wRL~l~G~~v~vg~rW~~la~~~~~~~~ 167 (229)
-+.|..| ++++|.++...-.+.+. .+..++.|-=.+- +|..-.|-. =.|+..|........+
T Consensus 270 Ky~LRa~-~~e~A~~~~~~Ftr~~~-----~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A---Lk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 270 KYLLRAG-RIEEAEKTASLFTREDV-----DPLSNLNDMQCMWFETECAEAYLRQGDYGLA---LKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhcCCCC-----CcccCHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHhc
Confidence 6667776 99999999966655531 2333444333333 333322221 1577777777766555
Q ss_pred ccccchhhHH
Q 026999 168 WYLECHLDLL 177 (229)
Q Consensus 168 ~~~~~F~d~H 177 (229)
|.. |+|
T Consensus 341 DQf----DFH 346 (517)
T PF12569_consen 341 DQF----DFH 346 (517)
T ss_pred ccc----cHH
Confidence 544 777
No 127
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.73 E-value=0.0078 Score=36.94 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=21.5
Q ss_pred HhhCCCCCCchhHHHHHHHHHHHhCCHHHHH
Q 026999 12 HQVLPYNQQEDFIFGILAFSLLELGQMSDAE 42 (229)
Q Consensus 12 ~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae 42 (229)
+|++..+|+++.++..+|-.|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4666667777777777777777777777665
No 128
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.67 E-value=0.085 Score=48.82 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=67.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEE 75 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~ 75 (229)
+.+.++..+.|++..+|...-+--++|=+....|+|..|.+.-++.++-||...--+-- ..|++++++.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45567777777777777777777777777777777777777777777777765322211 57777777777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.......- -. ++-.-.+..| .++|.....+.+.+
T Consensus 275 ~~~~~~g~~~~---l~---l~~lie~~~G-~~~Aq~~l~~Ql~r 311 (389)
T COG2956 275 AMETNTGADAE---LM---LADLIELQEG-IDAAQAYLTRQLRR 311 (389)
T ss_pred HHHccCCccHH---HH---HHHHHHHhhC-hHHHHHHHHHHHhh
Confidence 77744442211 11 2222223333 45666655566655
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.64 E-value=0.28 Score=48.85 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=100.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH-HHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH-VALCYL 100 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH-lAL~~l 100 (229)
-+.=.-|+++|....+.++.-|.--|..+-.+.- -.|+.+||........+ |. ..+|+-|| +|+.+-
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-----~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-----ND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-----cC-cccchhHHHHHHHHh
Confidence 3344558999999999999999999988887776 58999999999999888 32 37899999 789888
Q ss_pred hCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHh-hhhccccchhhHHHH
Q 026999 101 EGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD-QANWYLECHLDLLIL 179 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~-~~~~~~~~F~d~H~~ 179 (229)
..+ +|++|++.|.+.+.- +|++ .+-+-|.+=|= -+|..... .-+.|..+.+.-.. |..+- .|+-.+
T Consensus 87 ~dK-~Y~eaiKcy~nAl~~--~~dN---~qilrDlslLQ--~QmRd~~~-~~~tr~~LLql~~~~ra~w~--~~Avs~-- 153 (700)
T KOG1156|consen 87 SDK-KYDEAIKCYRNALKI--EKDN---LQILRDLSLLQ--IQMRDYEG-YLETRNQLLQLRPSQRASWI--GFAVAQ-- 153 (700)
T ss_pred hhh-hHHHHHHHHHHHHhc--CCCc---HHHHHHHHHHH--HHHHhhhh-HHHHHHHHHHhhhhhHHHHH--HHHHHH--
Confidence 887 999999999999877 4444 22233444332 33333321 12345554444332 23232 244333
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHh
Q 026999 180 WALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 180 ~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
--.|+...+..+++..++-.
T Consensus 154 ---~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 154 ---HLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ---HHHHHHHHHHHHHHHHHHhh
Confidence 23455556666666666554
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.021 Score=55.68 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=71.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+++++.++.+.+|...|.|.-.-.=+|-+|.-..+..+|..+++|||+|.|+..=+--. -.|.++||+..+-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999766655 69999999999988
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
++.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 854
No 131
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.51 E-value=0.47 Score=47.72 Aligned_cols=174 Identities=17% Similarity=0.118 Sum_probs=110.3
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCC-hhhHHH----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHD-CWSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~d-awA~Ha----~~Gr~~egi~~le~ 75 (229)
||..++|..+.+++..+|. +.=....|+ ..-|+.+|++|..+..+|....|.- .|---+ .+|..+|++.++++
T Consensus 598 gdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 7889999999999998886 333445566 3446779999999999999988887 343333 89999999999999
Q ss_pred chhhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 76 CSSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+...++. +| +|=-++..+-..+ +.+.|.+.|..-+.. .+ ++.+. -=||-+|+=.-- +-.|
T Consensus 677 ~lk~fp~------f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~--cP-~~ipL------WllLakleEk~~---~~~r 737 (913)
T KOG0495|consen 677 ALKSFPD------FHKLWLMLGQIEEQME-NIEMAREAYLQGTKK--CP-NSIPL------WLLLAKLEEKDG---QLVR 737 (913)
T ss_pred HHHhCCc------hHHHHHHHhHHHHHHH-HHHHHHHHHHhcccc--CC-CCchH------HHHHHHHHHHhc---chhh
Confidence 9996655 33 4445677666665 899999999886655 22 21111 112333332211 1124
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHH
Q 026999 155 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKG 197 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~ 197 (229)
=..+.+...- ..+..+|.=+-.+=.=.++|..+.++.+++.
T Consensus 738 AR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 738 ARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444433 2333233333333344578888877776653
No 132
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.41 E-value=0.012 Score=36.05 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 45 AKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 45 a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
.+|||++||+|+-++.. .+|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 05899999999999998 799999986
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.40 E-value=0.073 Score=50.28 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=67.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le~ 75 (229)
++..++.+.+.+++...|.++.++.+.|=-|...++|+.|.+.+++|+.+.|++- |..=+ ..|++++|+..|..
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5667888999999999999999999999999999999999999999999999995 55544 79999999998886
Q ss_pred c
Q 026999 76 C 76 (229)
Q Consensus 76 ~ 76 (229)
+
T Consensus 294 ~ 294 (395)
T PF09295_consen 294 C 294 (395)
T ss_pred C
Confidence 6
No 134
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.36 E-value=0.04 Score=30.10 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
++..+|..+.+.|++++|+...+++++++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45678889999999999999999999999974
No 135
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.1 Score=51.43 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=75.4
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
.+|+|++|++.+-+-|.+.|+|..++|. ..+++++++.+++...-.- ..+.| + .|.|.+++.++ ..|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~-~----fEKAYc~Yrln-k~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSF-F----FEKAYCEYRLN-KLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchh-h----HHHHHHHHHcc-cHH
Confidence 4789999999999999999999999999 7999999998888765311 11322 1 68999999997 999
Q ss_pred HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCc
Q 026999 108 KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 148 (229)
Q Consensus 108 ~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~ 148 (229)
+|++.++ - +++.+ ..-+.=-+..||||+.....
T Consensus 97 ealk~~~-~----~~~~~---~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 97 EALKTLK-G----LDRLD---DKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HHHHHHh-c----ccccc---hHHHHHHHHHHHHHhhHHHH
Confidence 9999997 1 22221 21233356789999876543
No 136
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.038 Score=51.96 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.|-.+|+++.-.++|.+|++.+.++|+++|+|+=|+-- ..|+++.|+..++++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666655544 45666666666666654
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.22 E-value=0.9 Score=46.70 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=75.8
Q ss_pred hHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 23 FIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 23 ~~~g~~AF--~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
-+.++++- .+--.|++++|++.+++.+..+|+++-+.-+ .+|+.++++-+---+.. ++|-.+ =.|=+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d~-e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKDY-ELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCh-HHHHH
Confidence 34555544 2233589999999999999999999888777 68888888876666555 555433 57778
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHH
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 140 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLw 140 (229)
++....++| .+++|.-.|.+.|... ++ ...-+..=++|+=
T Consensus 213 ladls~~~~-~i~qA~~cy~rAI~~~--p~---n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 213 LADLSEQLG-NINQARYCYSRAIQAN--PS---NWELIYERSSLYQ 252 (895)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHH
Confidence 888888886 8999999998888763 22 2333455666654
No 138
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.93 E-value=0.24 Score=39.04 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=45.8
Q ss_pred CChhHHHHHHHhhCCCCCC--------chh--------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--------EDF--------------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--------~~~--------------~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
|+........++++..|.+ ++| ++.-++-.+.+.|++++|+..++++++++|.|-.++
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 5666777777788776532 122 222233345667888888888888888888876555
Q ss_pred HH------hhCCHHHHHHHHHHchh
Q 026999 60 HA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 60 Ha------~~Gr~~egi~~le~~~~ 78 (229)
-. .+|+..++++..++..+
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54 46777777766666644
No 139
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.83 E-value=0.032 Score=39.29 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHhhCCC---CC----CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026999 1 MGRPDLCFDIIHQVLPY---NQ----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~---~~----~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln 52 (229)
+|+.+++++..++++.. .+ .-...+..+|.++...|++++|++..++|+++.
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 47888888888888864 22 235688999999999999999999999999874
No 140
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.18 Score=49.51 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=88.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHH----hhCCCCh-h------hHHH--hhCCHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL----KINKHDC-W------SQHA--HDCCFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL----~LnP~da-w------A~Ha--~~Gr~~e 68 (229)
+....+-....+++...|.||+++.-+|.+--+.+.|.+|....+.+| +.+|.-+ | -=|+ ..++.+|
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 455667778888999999999999999988888999999999999999 3333333 2 2344 8999999
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
||.+.+++..-=+. ....|- =+|+.|..+| ..|.|++.|.+.++.
T Consensus 474 AI~~~q~aL~l~~k---~~~~~a--sig~iy~llg-nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK---DASTHA--SIGYIYHLLG-NLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHcCCC---chhHHH--HHHHHHHHhc-ChHHHHHHHHHHHhc
Confidence 99999999872222 223443 3788888887 999999999999987
No 141
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.81 E-value=0.4 Score=42.78 Aligned_cols=117 Identities=10% Similarity=0.083 Sum_probs=92.1
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------------- 61 (229)
|+..++.+.-+++...+|..+ -+.-|++|+..-.++|++|+..++|=+.+.|+++.+--+
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 677777777777766666544 588999999999999999999999999999999988776
Q ss_pred hhCCHHHHHHHHHHchhhccCCC-------------CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCS-------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~-------------~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
-+....+++.-+..-+..|++.. ..+..|. =..|.+|++.| .+..|...++..+...
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E-m~IaryY~kr~-~~~AA~nR~~~v~e~y 197 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE-MAIARYYLKRG-AYVAAINRFEEVLENY 197 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhc-ChHHHHHHHHHHHhcc
Confidence 24456788888888888888732 1223443 24899999997 9999999998888763
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.65 E-value=0.18 Score=45.54 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCH-HHHHHHHHHchh
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCF-KEAVQFMEECSS 78 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~-~egi~~le~~~~ 78 (229)
.+......+..+..+...|......|+|++|++..++||+.+|+|+..+-. +.|+. ++.-+++.+-..
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 333333455667778888888888888888888888888888888876666 67877 445566666555
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.15 Score=49.48 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=72.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChh------hHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCC
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCW------SQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg 104 (229)
...+.|+|+.|...+-.|+.|.|.+-- |-++..|++++++.-..++++ ++|- ..--|--++-.++-+|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~----l~p~-w~kgy~r~Gaa~~~lg- 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR----LNPD-WAKGYSRKGAALFGLG- 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh----cCCc-hhhHHHHhHHHHHhcc-
Confidence 345789999999999999999999531 122279999999999988876 5543 1233345777888887
Q ss_pred CHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH
Q 026999 105 PMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 139 (229)
Q Consensus 105 ~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL 139 (229)
+|++|+..|..-+.. ++++.....-+.++.+..
T Consensus 85 ~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~ 117 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLED 117 (539)
T ss_pred cHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHH
Confidence 999999999998876 455544444455666333
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=0.34 Score=43.44 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
..-.||.+...|+|+.|+..++.=+.-=|++..+-.+ -+|+++++........+.|+.++ --| -..-=+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KAp-dallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAP-DALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CCh-HHHHHH
Confidence 6788999999999999999999999999999998888 59999999999999999999855 323 222468
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 96 ALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 96 AL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|.+..++| +.|+|-+.|+..|...
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHC
Confidence 99999997 9999999999888774
No 145
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.52 E-value=2.9 Score=43.16 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=97.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le 74 (229)
.||.+.+...+..++-.+|..+-++.++|-++++.|+...+-...-.|=-|||+|. |..-+ .+|..++|+-...
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999995 55444 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++. .+|.- --+.|-.+-.|...| ++-+|++-|.+.+.-
T Consensus 232 rAI~----~~p~n-~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 232 RAIQ----ANPSN-WELIYERSSLYQKTG-DLKRAMETFLQLLQL 270 (895)
T ss_pred HHHh----cCCcc-hHHHHHHHHHHHHhC-hHHHHHHHHHHHHhh
Confidence 9988 55542 346678888888887 999999999665543
No 146
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.46 E-value=0.39 Score=40.58 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
+-.+.-.|..+.+.|+|++|.+..++.+..-|+.+++-.+ .+|++++++..+++.++..+..+ ..+ ...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~-~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KAD-YAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THH-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chh-hHH
Confidence 3455667778889999999999999999999999999998 69999999999999999888844 433 344
Q ss_pred HHHHHHHHhCC----------CCHHHHHHHHHhhchhh
Q 026999 93 WHVALCYLEGH----------SPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 93 WHlAL~~l~~g----------g~~d~Al~~yd~~i~~~ 120 (229)
..+|++++... +...+|+..|...|...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 45666655431 13457788887777663
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.07 E-value=0.19 Score=52.32 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=69.9
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...++...-|++..++..+-+...+|-.+.+.-++-+|.+.+++|++|+|.|+-+.-+ ..-..+++........
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3455666677888899999999999999999889999999999999999999766655 3444444444433332
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+ ..+-+....||=|.+++|++.+ +.-.++..+...+
T Consensus 554 q---ka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 554 Q---KAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSAL 589 (1238)
T ss_pred h---hchHHHHHhhhhhccccccCcc-chhhHHHHHHHHh
Confidence 2 1111223334444444444443 4444444444433
No 148
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.94 E-value=0.15 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
+..+|+++--.|+|++|.+..++.|+++|+|.-|.-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 567899999999999999999999999999987653
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.36 Score=43.81 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g---~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
.|+...+...-.+++...|+++..++-+|=+|.... .-.+++++.++||+++|+|+=+.-- ++|++++|+.
T Consensus 169 ~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 169 LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 367788888888888889999988888888776643 4456999999999999999877655 8999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
..+.-.+.-+.
T Consensus 249 ~Wq~lL~~lp~ 259 (287)
T COG4235 249 AWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcCCC
Confidence 99988874433
No 150
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.81 E-value=0.12 Score=31.63 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH 54 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~ 54 (229)
++..+|-++...|+|++|++..+++|++.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3678899999999999999999997766543
No 151
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.78 E-value=0.52 Score=47.55 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=101.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+++..+.+..++.+..+|...-...-+|.+-.+.+++..|-+.+-+.+.++|+++-++.+ ..|+-.++-.-+.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 577788888889998888655444455555567789999999999999999999988887 58888999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
+.. || .-+--+|-+.-+...+-| .+|+|++.|.+.+.-+..++ ...++.+-+-.+-++..
T Consensus 579 AlK----cn-~~~w~iWENymlvsvdvg-e~eda~~A~~rll~~~~~~~---d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 579 ALK----CN-YQHWQIWENYMLVSVDVG-EFEDAIKAYHRLLDLRKKYK---DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred Hhh----cC-CCCCeeeechhhhhhhcc-cHHHHHHHHHHHHHhhhhcc---cchhhHHHHHHHHhhcc
Confidence 998 77 322227777888888987 99999999988776643222 34445555555555555
No 152
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.73 E-value=0.7 Score=44.43 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=39.8
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------hhCCHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------HDCCFKEAVQFME 74 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------~~Gr~~egi~~le 74 (229)
..+.+...+....+|+...++.+.|-.+.-.|+.++|.+...+|+.....=.-..|- +++++++|.....
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 344444555555566666666666666666666666666666666333332322332 4666666666555
Q ss_pred Hch
Q 026999 75 ECS 77 (229)
Q Consensus 75 ~~~ 77 (229)
.-.
T Consensus 330 ~L~ 332 (468)
T PF10300_consen 330 RLL 332 (468)
T ss_pred HHH
Confidence 554
No 153
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.62 E-value=0.23 Score=42.26 Aligned_cols=75 Identities=20% Similarity=0.114 Sum_probs=50.0
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChhhHHH----------hh
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHA----------HD 63 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~----------~d~Ae~~a~rAL~LnP~dawA~Ha----------~~ 63 (229)
++.++...+.....+|.|+..+..-|.+|.|..+ +++|+.-.++||.|||+...|+-. .+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4678888888888899999999999998888643 456888899999999998666544 45
Q ss_pred CCHHHHHHHHHHchh
Q 026999 64 CCFKEAVQFMEECSS 78 (229)
Q Consensus 64 Gr~~egi~~le~~~~ 78 (229)
.+..++-.+.+++..
T Consensus 87 ~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE 101 (186)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 555555555554443
No 154
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.60 E-value=0.59 Score=44.92 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=83.1
Q ss_pred CChhHHHHHHHhhCCCCCCch-----hHHHHHHHHH----H--HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC
Q 026999 2 GRPDLCFDIIHQVLPYNQQED-----FIFGILAFSL----L--ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC 64 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~-----~~~g~~AF~L----~--e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G 64 (229)
||.+..++...++.....-.+ ..++.|.++. . .....++|++.-.+.++.=|+.++=+-. .+|
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g 281 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG 281 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 788888888888877433211 1233333322 2 3447788999999999999999765544 899
Q ss_pred CHHHHHHHHHHch---hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 65 CFKEAVQFMEECS---STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 65 r~~egi~~le~~~---~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++|++.++++. ..|.+ +..-.+|=++.+|+-+. +|++|.+.|+.-+..
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCHMFQH-DWEEAAEYFLRLLKE 334 (468)
T ss_pred CHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhc
Confidence 9999999999765 44544 23347889999999997 999999999776654
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.46 E-value=1.1 Score=41.59 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred ChhHHHHHHHhhCCCCCC-----chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQ-----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~-----~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+...+.+.+++.+.+.+. -+.++--+|-......++++|.....||++-||+..=|--- -+|+++.|++
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH
Confidence 456677778877776553 34677778888888899999999999999999999766544 6999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++..+ .||-+-.-+---+.-+|-.+| +.++.+....+.+..
T Consensus 236 ~~e~v~e----Qn~~yl~evl~~L~~~Y~~lg-~~~~~~~fL~~~~~~ 278 (389)
T COG2956 236 ALERVLE----QNPEYLSEVLEMLYECYAQLG-KPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHH----hChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc
Confidence 9999988 455334445556788888887 999999888777665
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.35 E-value=0.4 Score=42.47 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=67.3
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|-.+-+|--..+++...|.-+-+.+.+|.=|.+.|+||.|-++..--++|+|..-+++-. +-||++-|.+-+.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 344555666678899999999999999999999999999999999999999999999988 89999999877777
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
.-.
T Consensus 159 fYQ 161 (297)
T COG4785 159 FYQ 161 (297)
T ss_pred HHh
Confidence 655
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.11 E-value=0.75 Score=47.80 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=71.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-------------------hhHHH-
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------------------WSQHA- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da-------------------wA~Ha- 61 (229)
|+.+.+.+.++.++...|+..-++.+.|+.+.+.++++.+-.+ +++.+-|.+. .|+-+
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~L 122 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTL 122 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 5667777777777777777777777777777777777777666 6777666665 33332
Q ss_pred -----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 -----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 -----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..|+.+++++.+++..+-.+. |+. .-| ++|.+|-+. +.++|+.+|.+.+...
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D~~-n~~--aLN--n~AY~~ae~--dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKADRD-NPE--IVK--KLATSYEEE--DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCcc-cHH--HHH--HHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 347777777777777763322 321 222 577776664 6777777777766654
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.03 E-value=1.6 Score=38.26 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.+-.+.-.|..+.+.|+|++|.+..++.+...|+.+++.-+ .+|++++|+...++..+..++.+ ..+ ..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-~~~-~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NID-YV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-chH-HH
Confidence 34445566777888999999999999999999999999866 69999999999999999888844 323 22
Q ss_pred HHHHHHHHHhCC-----------------CCHHHHHHHHHhhchhh
Q 026999 92 WWHVALCYLEGH-----------------SPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 92 ~WHlAL~~l~~g-----------------g~~d~Al~~yd~~i~~~ 120 (229)
.-=+|+++...+ ....+|+..+++-|...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y 154 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY 154 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence 224565543321 01346778888877763
No 159
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.95 E-value=0.65 Score=37.94 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchh
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~ 78 (229)
--|....+.|+|++|++..++-..-=|..+++--+ .+|++++|++-+++.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555555555555544445555544444 34555555555555544
No 160
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=1.1 Score=43.07 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=38.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCChhhHHH----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHDCWSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln--P~dawA~Ha----~~Gr~~egi~~le~ 75 (229)
||..++....+++.-.+|..--..-.+|.-|...|+|++=+++..+-+.+. ...+|-+|. +..+++.|+.+.++
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 777777777777777776544333444444444444444444444444433 122344443 34444444444444
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+++
T Consensus 326 ~I~ 328 (564)
T KOG1174|consen 326 CID 328 (564)
T ss_pred Hhc
Confidence 443
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.44 Score=45.43 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=22.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK 53 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP 53 (229)
|+.+.+....-+++..++.+.+++.+-+-.+-.+.+.+.|.....++|.++|
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp 234 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP 234 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccCh
Confidence 4444444444444444444444444444333333333333333333333333
No 162
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.64 E-value=0.25 Score=30.03 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK 53 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP 53 (229)
..+..+|..+...|++++|++..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3577899999999999999999999998754
No 163
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.54 E-value=0.34 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
++..+|.++.+.|++++|.+..++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56678889999999999999999999999974
No 164
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.39 E-value=0.61 Score=41.33 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=63.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhCCHHHHHHHHHHc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~Gr~~egi~~le~~ 76 (229)
|+++.+.+....+++.+|.+.|++-..|..+-.-|+|.-|..-..+=..-+|+||.-.-. ..=++.+|..-+.+.
T Consensus 113 ~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR 192 (297)
T COG4785 113 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQR 192 (297)
T ss_pred ccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999976655 344566666544443
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.18 E-value=0.73 Score=41.30 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~e 68 (229)
.||...+.+.....+-.+|+.. -+++-+|=++-..|+|++|...+.+.+.-.|+.++|--+ ..|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3778888888888888888755 477778888999999999999999999999999999877 6899999
Q ss_pred HHHHHHHchhhccCC
Q 026999 69 AVQFMEECSSTWSSC 83 (229)
Q Consensus 69 gi~~le~~~~~w~~~ 83 (229)
|.+.+++....++..
T Consensus 234 A~atl~qv~k~YP~t 248 (262)
T COG1729 234 ACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHCCCC
Confidence 999999999988773
No 166
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.11 E-value=2.4 Score=39.93 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------------------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------------- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------------- 61 (229)
||+...++.-..||+..-|+..-+--..|-+|..+|++++|+.=+++-|.-+|++.-..-+
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888888999999999999988888889999999999999999999999999977655544
Q ss_pred --hhCCHHHHHHHHHHchh--hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHH
Q 026999 62 --HDCCFKEAVQFMEECSS--TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALG 137 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~--~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~s 137 (229)
-.|+...+|+++..-.+ -|+. ++ +---|-+|++.| +.-.|+.=. .....+ +++ .....---+.
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda--~l-----~~~Rakc~i~~~-e~k~AI~Dl--k~askL-s~D--nTe~~ykis~ 231 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDA--SL-----RQARAKCYIAEG-EPKKAIHDL--KQASKL-SQD--NTEGHYKISQ 231 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchh--HH-----HHHHHHHHHhcC-cHHHHHHHH--HHHHhc-ccc--chHHHHHHHH
Confidence 37888889998888765 2444 22 223788888886 776666444 333322 222 2233455666
Q ss_pred HHHHHhhcCCcccccccHHHHHHHHH
Q 026999 138 LLLRVYVRGELDVFGNRLKVLADCVA 163 (229)
Q Consensus 138 LLwRL~l~G~~v~vg~rW~~la~~~~ 163 (229)
|||-+. |+.+-..++-+.+.
T Consensus 232 L~Y~vg------d~~~sL~~iRECLK 251 (504)
T KOG0624|consen 232 LLYTVG------DAENSLKEIRECLK 251 (504)
T ss_pred HHHhhh------hHHHHHHHHHHHHc
Confidence 776532 23455666666554
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.06 E-value=2.1 Score=34.97 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=51.4
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--hhC
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--HDC 64 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~~G 64 (229)
|+...+....+.+..-+|..+ .+.-.++.++-.+|+|++|.+.++|=++|+|+++.+--+ +.|
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 667777777777766666433 577789999999999999999999999999999987777 444
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.01 E-value=1.8 Score=42.11 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=76.2
Q ss_pred CChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
||..++.+ +.+|+..-++ .+-+...-+.-+++-| ++..|-..+..||.+++.++-|+.. +.|+.+++..
T Consensus 433 ~d~~~aie-ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIE-ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHH-HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 44555543 4556654322 2233333334445555 9999999999999999999988887 8999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
|..++.+.=.+|. --..+.+|-+-.+| +.|+|++.|-+
T Consensus 512 ~ykeal~ndasc~-----ealfniglt~e~~~-~ldeald~f~k 549 (840)
T KOG2003|consen 512 FYKEALNNDASCT-----EALFNIGLTAEALG-NLDEALDCFLK 549 (840)
T ss_pred HHHHHHcCchHHH-----HHHHHhcccHHHhc-CHHHHHHHHHH
Confidence 9999988333322 23346889888887 99999998854
No 169
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.88 E-value=0.31 Score=50.55 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.+++-+++..+|..+..+|++++|.++.+++|+++|+|+-++.. .. +.++|+.+..++..
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555544 23 55555555555533
No 170
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=1.6 Score=42.36 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=56.7
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+.++=.|++..+|-|--+-.=+|=+++-.+-.--|.=..+||+++.|||+--+-+ ..++.+|||.-..++.
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555556666555544333333334444555555555566666666666554444 3556666666555555
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
. ++.. -+-..|-+|-.|-+++ ++++|...|.+.|.
T Consensus 460 ~----~~dt-e~~~l~~LakLye~l~-d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 460 L----LGDT-EGSALVRLAKLYEELK-DLNEAAQYYEKYVE 494 (559)
T ss_pred h----cccc-chHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 4 2321 2233455565555554 55666555554443
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.58 E-value=1.2 Score=39.57 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=61.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hh-CCHHHHHHHHHHchhhccCCCC-cchhhhHHH
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HD-CCFKEAVQFMEECSSTWSSCSS-FMYTHNWWH 94 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~-Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WH 94 (229)
+-.+. .+++++|....++|+.+--...----+ .. |++++|+.+.+++..-+...+. ....-..-.
T Consensus 82 a~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 82 ANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 33443 449999999999999873333221111 45 8999999999999887776553 223346678
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+|.++..+| +|++|+++|++.+...
T Consensus 161 ~A~l~~~l~-~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 161 AADLYARLG-RYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 999999997 9999999998877653
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=1.2 Score=42.13 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+.++..++.++.+||...|.+.=+++--|-++.+.|+|+.|+...++|++++|+|- ++++
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-a~~~ 329 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-AARA 329 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-HHHH
Confidence 45778999999999999999999999999999999999999999999999999994 4444
No 173
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.81 Score=44.64 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=50.2
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCH
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~ 106 (229)
..|+|..|.+..-+||..+|+|+-..-. -.|.+.+|++-.+.+++ ++| |..+.+. .|.++..+. +|
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie----L~p~~~kgy~R--Kg~al~~mk-~y 442 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE----LDPNFIKAYLR--KGAALRAMK-EY 442 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCchHHHHHHH--HHHHHHHHH-HH
Confidence 3467777777777777777777655544 56667777766666665 232 3333332 344444554 78
Q ss_pred HHHHHHHHhhchhh
Q 026999 107 RKVLEIYDNHIWKE 120 (229)
Q Consensus 107 d~Al~~yd~~i~~~ 120 (229)
++|++.|...+...
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888888874
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.18 E-value=0.81 Score=40.61 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=78.0
Q ss_pred ChhHHHHHHHhhCCCCC--C----chhHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCCChhhHHH------------hh
Q 026999 3 RPDLCFDIIHQVLPYNQ--Q----EDFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHDCWSQHA------------HD 63 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~--~----~~~~~g~~AF~L~e~-g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~ 63 (229)
++..+.+...+++..+- + -+..+.-+|=.+++. |++++|.+..++|+++-..+.-...+ ..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 56777788888887532 1 235677778889888 99999999999999985555432222 68
Q ss_pred CCHHHHHHHHHHchhhccCCCCcch--hh-hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSFMY--TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~~~--~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..+++....-...+ .+. .. .+--..|++|..| |+-.|.+.+++....
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~-l~~~~~~~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENN-LLKYSAKEYFLKAILCHLAMG-DYVAARKALERYCSQ 225 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHC-TTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTT
T ss_pred CCHHHHHHHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 999999999999876443322 222 11 2223677999997 999999999886544
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=1.5 Score=41.98 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=80.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHH--HHHHHHHH----------HhCCHHHHHHHHHHHHhhCCCChhhHHH--------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIF--GILAFSLL----------ELGQMSDAEEAAKKGLKINKHDCWSQHA-------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~--g~~AF~L~----------e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------- 61 (229)
++.+.+...-+++|..+|+..-.- .|..=.|+ .+|.|..|++..-.||.++|++.--..-
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 355666677778888877643222 12211232 3789999999999999999997422221
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..||.+|||.--+.+.. +++- +.--+---|.+|+.++ ++++|++-|.+.+...
T Consensus 297 ~~rLgrl~eaisdc~~Al~----iD~s-yikall~ra~c~l~le-~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK----IDSS-YIKALLRRANCHLALE-KWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhh----cCHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 68999999999999887 4442 1122223899999997 9999999999988773
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.86 E-value=0.45 Score=27.74 Aligned_cols=28 Identities=11% Similarity=0.373 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|.++|.+++..| ++++|++.|++.+.-
T Consensus 3 ~~~~lg~~~~~~~-~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLG-NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 3567999999997 999999999998875
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.78 E-value=0.88 Score=41.03 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC--CHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC--CFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G--r~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
+.-....+.-+++...|++|.|++..++.-..+.++.-..-+ .+| .+.++.-++++-....+. ++ ..
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-t~----~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-TP----KL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SH----HH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC-CH----HH
Confidence 445666677778899999999999999999998887655555 455 589999999997765443 22 22
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.=-+|.+++.+| +|++|.+++...+..
T Consensus 204 lng~A~~~l~~~-~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 204 LNGLAVCHLQLG-HYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 225899999997 999999999887754
No 178
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.69 E-value=15 Score=34.77 Aligned_cols=177 Identities=10% Similarity=0.035 Sum_probs=113.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
||+.++...+.|.-.+ .+.|....+.|- +-.+.|++++|-..-.+|=++.|++--++-- -+|+...+..-+
T Consensus 98 G~~~qAEkl~~rnae~-~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEH-GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhc-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 8899999999886554 455555556655 6778999999999999999997777554443 689989998888
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH--HhhcCCcccc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR--VYVRGELDVF 151 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR--L~l~G~~v~v 151 (229)
++... .+|..+.-. =-..-+|+..| ++.+++++.++.- |.+.-...+..+-=..-|+ |+=.+.+.+.
T Consensus 177 ~~ll~----~~pr~~~vl-rLa~r~y~~~g-~~~~ll~~l~~L~-----ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 177 DQLLE----MTPRHPEVL-RLALRAYIRLG-AWQALLAILPKLR-----KAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred HHHHH----hCcCChHHH-HHHHHHHHHhc-cHHHHHHHHHHHH-----HccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 88877 344323221 12556788887 9999999995532 2333344455554455555 2212221111
Q ss_pred -c--ccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHH
Q 026999 152 -G--NRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLK 196 (229)
Q Consensus 152 -g--~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~ 196 (229)
| +.|+++.+.....++- -+-++-=+..-|+.+++.+++.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l------~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPEL------VVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred hHHHHHHHhccHHhhcChhH------HHHHHHHHHHcCChHHHHHHHH
Confidence 3 6888888877753221 2233444556677777666554
No 179
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.63 E-value=1.7 Score=37.54 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=74.4
Q ss_pred HHHHhhCCCCCCchh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHc
Q 026999 9 DIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 9 ~~~~ralp~~~~~~~---~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~ 76 (229)
..+++..-.++...| +.=.+|=...|+|++++|+..-+.+|....+.-.---+ .+|.+++|+..++.-
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 344455545543333 23345558889999999999999999876665443333 799999999999988
Q ss_pred hh-hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 77 SS-TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~-~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|.. +..+. .+..++..| +.++|++.|...+..
T Consensus 153 ~~~~w~~----~~~el---rGDill~kg-~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 153 KEESWAA----IVAEL---RGDILLAKG-DKQEARAAYEKALES 188 (207)
T ss_pred ccccHHH----HHHHH---hhhHHHHcC-chHHHHHHHHHHHHc
Confidence 54 3433 23455 788889987 999999999998876
No 180
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.51 E-value=1.9 Score=41.99 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=75.8
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHH-------HHHHHHHhhCC----CC-hh-hHHH---------
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-------EAAKKGLKINK----HD-CW-SQHA--------- 61 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae-------~~a~rAL~LnP----~d-aw-A~Ha--------- 61 (229)
+..-...+.++|..+|+-+.++-++|- +++.-..+|+ ++++..+.... .. .| ..|.
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 344566788899999988888777753 2233344444 44444444322 11 11 1111
Q ss_pred ---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh
Q 026999 62 ---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 132 (229)
Q Consensus 62 ---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~ 132 (229)
..|+.+|||+.+..-++..+..+ .+-.| -.+--++|+++ .|+++.++..+.=- ..-+.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~Ir--enLie~LLelq-~Yad~q~lL~kYdD-----i~lpkSAti 332 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIR--ENLIEALLELQ-AYADVQALLAKYDD-----ISLPKSATI 332 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHH--HHHHHHHHhcC-CHHHHHHHHHHhcc-----ccCCchHHH
Confidence 47999999999999988555433 23344 24888999997 99998887765311 111124456
Q ss_pred hhHHHHH
Q 026999 133 LNALGLL 139 (229)
Q Consensus 133 ~Da~sLL 139 (229)
+-+++||
T Consensus 333 ~YTaALL 339 (539)
T PF04184_consen 333 CYTAALL 339 (539)
T ss_pred HHHHHHH
Confidence 7777766
No 181
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.90 E-value=0.46 Score=27.05 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKK 47 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~r 47 (229)
+.++..+|.++..+|++++|+...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35778899999999999999988764
No 182
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.64 E-value=1.1 Score=38.21 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH------h-----h-----CCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA------H-----D-----CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha------~-----~-----Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
.++.|.+.++...+.||+|+.+++- . + .-++++|.=++.++. .+|- ...-.|-++.+|.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~-~hdAlw~lGnA~t 80 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPN-KHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCc-hHHHHHHHHHHHH
Confidence 3678999999999999999998887 1 1 235677777777777 6664 3346788888887
Q ss_pred hCC---CCHHHHHHHHHhh
Q 026999 101 EGH---SPMRKVLEIYDNH 116 (229)
Q Consensus 101 ~~g---g~~d~Al~~yd~~ 116 (229)
.++ .+..+|-..|+..
T Consensus 81 s~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHH---HHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHH
Confidence 753 2444555555443
No 183
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.63 E-value=0.58 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+|..|...| ++++|+++|.+.+..
T Consensus 2 l~~Lg~~~~~~g-~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQG-DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 346899999997 999999999995543
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=89.42 E-value=1.8 Score=36.22 Aligned_cols=77 Identities=17% Similarity=-0.021 Sum_probs=61.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH-HH-----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ-HA-----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~-Ha-----~~Gr~~egi~~le~ 75 (229)
|+.+.+...-.-..-.++.++-..--+|-++...++|++|....-.|..++++||-.. |+ +.|+.++|+.-++.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 6667777666666556665554444456678899999999999999999999997654 44 89999999999999
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
++.
T Consensus 131 a~~ 133 (165)
T PRK15331 131 VNE 133 (165)
T ss_pred HHh
Confidence 987
No 185
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.29 E-value=3.9 Score=41.44 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le 74 (229)
+|..+++++++++++..+|.++-++-|+|=+++..++.+.|.+.+-.++...|+.+ |.+-+ ..|.+-.|...++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999996 55555 6889999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHH--hCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYL--EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l--~~gg~~d~Al~~yd~~i~~ 119 (229)
+..- -||--. ..| ++...+ ..| ..+.|..+..+.+..
T Consensus 744 rarl----kNPk~~--~lw-le~Ir~ElR~g-n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 744 RARL----KNPKNA--LLW-LESIRMELRAG-NKEQAELLMAKALQE 782 (913)
T ss_pred HHHh----cCCCcc--hhH-HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9865 344311 222 343333 354 888888887776654
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.18 E-value=4.4 Score=31.68 Aligned_cols=83 Identities=12% Similarity=0.240 Sum_probs=58.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCC--------hhhHHH--------------------hhCCHHHHHHHHHHchhhccC
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHD--------CWSQHA--------------------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~d--------awA~Ha--------------------~~Gr~~egi~~le~~~~~w~~ 82 (229)
.....|+..++.+..++|+++=..+ .|..-. ..|++++++.++++...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~---- 90 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA---- 90 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh----
Confidence 3456788899999999999986443 454443 48999999999999988
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 83 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 83 ~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|+ .-.+|=.+-.+|...| ++.+|++.|++....
T Consensus 91 ~dP~-~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 91 LDPY-DEEAYRLLMRALAAQG-RRAEALRVYERYRRR 125 (146)
T ss_dssp HSTT--HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 5665 3445556667777886 999999999776544
No 187
>PRK10941 hypothetical protein; Provisional
Probab=88.54 E-value=1.2 Score=39.91 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.+..+=-++.+.+++++|.+..++.|.++|+|+.-+=. ..|++..|+.-++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45555567777777777777777777777777764443 57777777776666655
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.45 E-value=8.9 Score=28.84 Aligned_cols=110 Identities=19% Similarity=0.311 Sum_probs=66.2
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCC-ChhhHHH--------hhCCHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKH-DCWSQHA--------HDCCFKEAVQFME 74 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~-dawA~Ha--------~~Gr~~egi~~le 74 (229)
..+.....+++...+........... .+...|++++|.....+++.++|. ...+... ..|+.++++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 44555555666555544444444444 677778888888888888776663 2222222 3667777777777
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+........ ....+.-++..+...+ ++++++..+...+..
T Consensus 192 ~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~ 231 (291)
T COG0457 192 KALKLNPDD----DAEALLNLGLLYLKLG-KYEEALEYYEKALEL 231 (291)
T ss_pred HHHhhCccc----chHHHHHhhHHHHHcc-cHHHHHHHHHHHHhh
Confidence 777633331 1223334666666665 778888777776665
No 189
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.20 E-value=12 Score=38.92 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----------hhCCHHHHHHHHHHchhhccCCCCcchh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----------HDCCFKEAVQFMEECSSTWSSCSSFMYT 89 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----------~~Gr~~egi~~le~~~~~w~~~~~~~~~ 89 (229)
...+....|-+....|+.+.|++.+++++..=|.+.|..-. -+|+.+++...|.++.+ +..-
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-------~a~~ 529 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ-------MARQ 529 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-------HHHH
Confidence 45677888889999999999999999999999999987666 59999999999999987 2245
Q ss_pred hhHHHHHHH
Q 026999 90 HNWWHVALC 98 (229)
Q Consensus 90 H~~WHlAL~ 98 (229)
|..+|++++
T Consensus 530 ~~~~~l~~~ 538 (894)
T COG2909 530 HDVYHLALW 538 (894)
T ss_pred cccHHHHHH
Confidence 555665544
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.18 E-value=1.7 Score=37.76 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCChhHHHHHHHhhCC-CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp-~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--awA~Ha------~~Gr~~egi~ 71 (229)
+||..+++..-++++. .+.+|+-++--+|=++-+.++...|...-++-.+-||.- |..+-. -+|+++++..
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 4677777777777776 455666555556666777777777777777777777653 222222 5677776666
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
-++.+...++.
T Consensus 182 afe~a~~~ypg 192 (251)
T COG4700 182 AFEVAISYYPG 192 (251)
T ss_pred HHHHHHHhCCC
Confidence 66666664433
No 191
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.39 E-value=1.7 Score=28.45 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
|+|-.|++.| |++.|.++.+..+... .....-.|-+||=+
T Consensus 4 dLA~ayie~G-d~e~Ar~lL~evl~~~-------~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMG-DLEGARELLEEVIEEG-------DEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcC-ChHHHHHHHHHHHHcC-------CHHHHHHHHHHHhc
Confidence 7999999997 9999999999988431 24445677777644
No 192
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=86.92 E-value=1.3 Score=41.69 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=38.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
|.+-+++..+.+||..+|+|..++--.|-++.-.-.||.|+.-.++|+++||+|-
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 3455666677777777777777777777777666677777777777777777665
No 193
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.50 E-value=2.4 Score=34.25 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCC--HHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCC--FKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr--~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
-|.+.|..++-++...|+|+++...+.+||-. -...|. .+||.-|+.-... -|+
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y--------FNRRGEL~qdeGklWIaaVfs----------------ra~ 108 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQSADRALRY--------FNRRGELHQDEGKLWIAAVFS----------------RAV 108 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------HHHH--TTSTHHHHHHHHHHH----------------HHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--------HhhccccccccchhHHHHHHH----------------HHH
Confidence 36788999999999999999999999998731 113343 3566666543322 445
Q ss_pred HHHhCCCCHHHHHHHHHhhc
Q 026999 98 CYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i 117 (229)
+.-.+| +.++|+.-|....
T Consensus 109 Al~~~G-r~~eA~~~fr~ag 127 (144)
T PF12968_consen 109 ALEGLG-RKEEALKEFRMAG 127 (144)
T ss_dssp HHHHTT--HHHHHHHHHHHH
T ss_pred HHHhcC-ChHHHHHHHHHHH
Confidence 545676 8898888886543
No 194
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.20 E-value=12 Score=28.05 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=77.6
Q ss_pred CChhHHHHHHHhhCC--CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH-------HHhhCCHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ-------HAHDCCFKEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp--~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~-------Ha~~Gr~~egi~~ 72 (229)
|+...+.....+.+. ..+.....+...+......+.+.++.+...+++..+|++.... ....|++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 445556666666665 4666777777777888888889999999999999888762221 1168999999999
Q ss_pred HHHchhhccCCCC--cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSS--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~--~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++.. .++ ........-....+...+ ++++++..+++.+..
T Consensus 153 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~ 196 (291)
T COG0457 153 YEKALE----LDPELNELAEALLALGALLEALG-RYEEALELLEKALKL 196 (291)
T ss_pred HHHHHh----cCCCccchHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhh
Confidence 998855 222 122333333444455655 899999999887766
No 195
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.16 E-value=12 Score=36.69 Aligned_cols=126 Identities=16% Similarity=0.234 Sum_probs=82.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------h------------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------H------------ 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~------------ 62 (229)
+|+.+++++..-+.-..--++..++..+|-+++-..+-.+|++...++..+=|+||-.+-- .
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 3677777777777655555677778888888888888888888888888888888865543 1
Q ss_pred ----------------------hCCHHHHHHHHHHchhhccCCCCcchhhhHHH--HHHHHHhCCCCHHHHHHHHHhhch
Q 026999 63 ----------------------DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH--VALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 63 ----------------------~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH--lAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.=.+++|.+++++.- +-|...-|. .|-|.-.. |+|.+|+++|.. |.
T Consensus 617 dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-------iqp~~~kwqlmiasc~rrs-gnyqka~d~yk~-~h 687 (840)
T KOG2003|consen 617 DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-------IQPNQSKWQLMIASCFRRS-GNYQKAFDLYKD-IH 687 (840)
T ss_pred hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHhc-ccHHHHHHHHHH-HH
Confidence 1123455555555532 123334454 45665555 599999999955 43
Q ss_pred hhccCCCCCchhhhhhHHHHHHHHh
Q 026999 119 KELEKPDAVHPEVYLNALGLLLRVY 143 (229)
Q Consensus 119 ~~~~~~~~~~~~~~~Da~sLLwRL~ 143 (229)
+- ..+-+|..-+|-|+-
T Consensus 688 rk--------fpedldclkflvri~ 704 (840)
T KOG2003|consen 688 RK--------FPEDLDCLKFLVRIA 704 (840)
T ss_pred Hh--------CccchHHHHHHHHHh
Confidence 31 234579999998864
No 196
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.70 E-value=1.5 Score=25.72 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|-++|.+|+.+| ++++|+..|.+.|.-
T Consensus 4 ~~~~g~~~~~~~-~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLG-DYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 447999999997 999999999998865
No 197
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=85.48 E-value=22 Score=36.27 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=103.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-hhCCHHHHHHHHHHchhhc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-~~Gr~~egi~~le~~~~~w 80 (229)
|+...+-..+.|-+. .|+++..+..+|=++-.--.|+.|-+..+.-=+- -.-.|+.|. +++++.++...++...+
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-A~r~~~~~~~~~~~fs~~~~hle~sl~-- 513 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-AQRSLALLILSNKDFSEADKHLERSLE-- 513 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-HHHhhccccccchhHHHHHHHHHHHhh--
Confidence 444455555555555 5556666666655555555555555554332211 112233334 67999999999999998
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHH
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLAD 160 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~ 160 (229)
.||. .--.|.-.+-+.+.++ +++.+++.|.+.+.. ++++ ..--.|-+..+-|+.=. ..-|..+-+
T Consensus 514 --~npl-q~~~wf~~G~~ALqle-k~q~av~aF~rcvtL--~Pd~---~eaWnNls~ayi~~~~k------~ra~~~l~E 578 (777)
T KOG1128|consen 514 --INPL-QLGTWFGLGCAALQLE-KEQAAVKAFHRCVTL--EPDN---AEAWNNLSTAYIRLKKK------KRAFRKLKE 578 (777)
T ss_pred --cCcc-chhHHHhccHHHHHHh-hhHHHHHHHHHHhhc--CCCc---hhhhhhhhHHHHHHhhh------HHHHHHHHH
Confidence 7765 4467778899999997 999999999999887 3333 22244444455454321 345777777
Q ss_pred HHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHH
Q 026999 161 CVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGL 198 (229)
Q Consensus 161 ~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~ 198 (229)
...-....-..+=|++|.+ ...|..+.+-+...++
T Consensus 579 AlKcn~~~w~iWENymlvs---vdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVS---VDVGEFEDAIKAYHRL 613 (777)
T ss_pred HhhcCCCCCeeeechhhhh---hhcccHHHHHHHHHHH
Confidence 6665433334456666643 3455554444443333
No 198
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.00 E-value=1.6 Score=38.90 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=48.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
||.+.+.+...|++..-|+....-.-+++..+..|+++.|-+..++-|+++|.|--+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 778888888889988888777777778888888999999999999999999988543
No 199
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.97 E-value=0.98 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++|.++...| ++++|++.|++.|..
T Consensus 3 ~~~~a~~~~~~g-~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLG-DYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 357999999986 999999999888765
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=3.6 Score=37.33 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.|.-+..+.=.|.+....|+|++|+..-+.||.-.|+|+-.+-. ++|...+..+-......
T Consensus 203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 45566677777888999999999999999999999999988776 89999888865555544
No 201
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.59 E-value=1.4 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++|.+|...| ++++|+.++.+.+...
T Consensus 7 ~la~~~~~~g-~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 7 NLANAYRAQG-RYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-hcchhhHHHHHHHHHH
Confidence 5999999997 9999999998887764
No 202
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.05 E-value=1.5 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|..+|.++...| ++++|+..|+..|..
T Consensus 4 ~~~~a~~~~~~~-~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLG-DYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHcc
Confidence 567999999997 999999999887753
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=83.66 E-value=9.7 Score=33.86 Aligned_cols=108 Identities=12% Similarity=0.023 Sum_probs=51.7
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHH---hCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLE---LGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e---~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
..+|....++....+..+.+ +.++++.| .++.+.|.+..+++|..=|++.--+-. ..|+.+.+...+++
T Consensus 18 ~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 44555556665322222222 33444443 234555666666666666666433333 56666666666666
Q ss_pred chhhccCCCCcc-hhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~-~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+... +++-. ..-+|=-+.-|-..-| +.+.+.+++++...
T Consensus 96 ~i~~---l~~~~~~~~iw~~~i~fE~~~G-dl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 96 AISS---LPKEKQSKKIWKKFIEFESKYG-DLESVRKVEKRAEE 135 (280)
T ss_dssp HCCT---SSCHHHCHHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHHh---cCchhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 6552 12111 1224444555555554 66666666655444
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=83.53 E-value=6.7 Score=37.15 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHhhCCC-CCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPY-NQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~-~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
.|+.+.+...+..+++. |++. ...+ .-..-++...=++.+++.+...|++|-.+-+ -.+.+.+|-.+
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 47888999999999995 3333 2333 3445678888899999999999999966666 57788999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++.+.+ ..|- .+=|==+|..+...| +.++|-..+...+.-.
T Consensus 351 leaAl~----~~~s--~~~~~~la~~~~~~g-~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 351 LEAALK----LRPS--ASDYAELADALDQLG-EPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHh----cCCC--hhhHHHHHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 998877 2222 111122788888886 8888888887765433
No 205
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=83.27 E-value=17 Score=32.24 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=59.1
Q ss_pred hCCHHHHHHHHHHHHhhCC--CChhhHHH----h-hCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 35 LGQMSDAEEAAKKGLKINK--HDCWSQHA----H-DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP--~dawA~Ha----~-~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
++..++|+.+..+|+.-++ -+.|...| . .++.+-|...+|.....+.. + .-+|.+...+++..+ +.+
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~----~~~~~~Y~~~l~~~~-d~~ 87 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-D----PDFWLEYLDFLIKLN-DIN 87 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT--HH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-C----HHHHHHHHHHHHHhC-cHH
Confidence 3348999999999995444 23444444 2 46666699999999986666 2 357889999999997 999
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
.|..+|++.|..
T Consensus 88 ~aR~lfer~i~~ 99 (280)
T PF05843_consen 88 NARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 206
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.79 E-value=19 Score=33.47 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHhhCCC--------C------C-------------Cchh--HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 026999 1 MGRPDLCFDIIHQVLPY--------N------Q-------------QEDF--IFGILAFSLLELGQMSDAEEAAKKGLKI 51 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~------~-------------~~~~--~~g~~AF~L~e~g~~d~Ae~~a~rAL~L 51 (229)
.||...+-+.++|+|=. . . +-++ ++..+--.|.+.|.+.-|.+.++--|.|
T Consensus 53 ~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 53 QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL 132 (360)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 47888888888887521 1 1 1112 4445555899999999999999999999
Q ss_pred CCC-ChhhHHH-------hhCCHHHHHHHHHHchh----hc-cCCCCcchhhhHHHHHHHHHhCCCCH------------
Q 026999 52 NKH-DCWSQHA-------HDCCFKEAVQFMEECSS----TW-SSCSSFMYTHNWWHVALCYLEGHSPM------------ 106 (229)
Q Consensus 52 nP~-dawA~Ha-------~~Gr~~egi~~le~~~~----~w-~~~~~~~~~H~~WHlAL~~l~~gg~~------------ 106 (229)
+|. ||.++=- ..++++-=+++.++... .| ...+++.. =.||+++.++ +.
T Consensus 133 dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~-----S~aLA~~~l~-~~~~~~~~~~~~~~ 206 (360)
T PF04910_consen 133 DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF-----SIALAYFRLE-KEESSQSSAQSGRS 206 (360)
T ss_pred CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH-----HHHHHHHHhc-Cccccccccccccc
Confidence 999 9988765 68888888888887644 22 22333322 2555555554 44
Q ss_pred ---HHHHHHHHhhchh
Q 026999 107 ---RKVLEIYDNHIWK 119 (229)
Q Consensus 107 ---d~Al~~yd~~i~~ 119 (229)
++|-....+.|..
T Consensus 207 ~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 207 ENSESADEALQKAILR 222 (360)
T ss_pred cchhHHHHHHHHHHHH
Confidence 6666666665544
No 207
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.52 E-value=15 Score=36.23 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=86.6
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+|.....++-..|-+--+.|..-+-+ ..+++|+..++.++=|+-.|.|+.++-- ..|+.+.+.+..+=++
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelEl-qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELEL-QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 45677777777777888877777776655 5689999999999999999999776655 6899999999999887
Q ss_pred hhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. .|. -+|-.+|=-.=.|-++.| .++.+..+|.+.+..
T Consensus 499 ~----qp~ldmpellwkaYIdFEi~~~-E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 499 S----QPALDMPELLWKAYIDFEIEEG-EFEKARALYERLLDR 536 (677)
T ss_pred c----CcccccHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence 6 232 246666666677778886 999999999888766
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.21 E-value=15 Score=34.72 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=86.0
Q ss_pred CChhHHHHHHHhhCC-CCCCchhHHHHHHHHHH----H-----hCCHHHHHHHHHHHHhhCCCChhhHHH-----hhCCH
Q 026999 2 GRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLL----E-----LGQMSDAEEAAKKGLKINKHDCWSQHA-----HDCCF 66 (229)
Q Consensus 2 G~~~~~~~~~~ralp-~~~~~~~~~g~~AF~L~----e-----~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~Gr~ 66 (229)
||.+++++.+..++. ..+.++..+|+.|=++- + ...+++|+...+||++++|+-=-++.+ ..|..
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence 899999999999555 56788889998886542 2 235888999999999999876555555 34432
Q ss_pred HHHH--------HHHHHchhhccCCCCcchhhhHHHHHHH---HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhH
Q 026999 67 KEAV--------QFMEECSSTWSSCSSFMYTHNWWHVALC---YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNA 135 (229)
Q Consensus 67 ~egi--------~~le~~~~~w~~~~~~~~~H~~WHlAL~---~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da 135 (229)
.+.. .+-.-.-+.+. .-..-.||-.|-+ .+-.| ++++|...+.+.+.. +...=.....+..
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~----~~~~~dYWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l---~~~~W~l~St~~n 347 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGS----LEKMQDYWDVATLLEASVLAG-DYEKAIQAAEKAFKL---KPPAWELESTLEN 347 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhcc----ccccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhc---CCcchhHHHHHHH
Confidence 2222 11111112111 1223466776644 23355 999999999888865 2221123335666
Q ss_pred HHHHHHHhhcCC
Q 026999 136 LGLLLRVYVRGE 147 (229)
Q Consensus 136 ~sLLwRL~l~G~ 147 (229)
.-|+=++.-.-.
T Consensus 348 i~Li~~~~~~~~ 359 (374)
T PF13281_consen 348 IKLIRHFRKRPE 359 (374)
T ss_pred HHHHHHHhcCCC
Confidence 666666555443
No 209
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.04 E-value=17 Score=34.22 Aligned_cols=109 Identities=10% Similarity=0.081 Sum_probs=83.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~ 72 (229)
|+++.++..-.|.+..--..|.++..+|......++||-+....+||++...++.-+..- ..|++.-+..-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 567778888888888877888899999999999999999999999999998876555444 68888888887
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
++=+.. +++.+ +--.-++|......| ++++|..+|...
T Consensus 418 frlaL~---~d~~h--~ealnNLavL~~r~G-~i~~Arsll~~A 455 (478)
T KOG1129|consen 418 FRLALT---SDAQH--GEALNNLAVLAARSG-DILGARSLLNAA 455 (478)
T ss_pred HHHHhc---cCcch--HHHHHhHHHHHhhcC-chHHHHHHHHHh
Confidence 777766 22222 222235888776665 999999998653
No 210
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.99 E-value=3 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHhCCHHHHHHH--HHHHHhhCCCC
Q 026999 28 LAFSLLELGQMSDAEEA--AKKGLKINKHD 55 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~--a~rAL~LnP~d 55 (229)
+|..+-..|+|++|+.. .+-+..++|.|
T Consensus 7 ~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 47788999999999999 77999999876
No 211
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=81.97 E-value=6.4 Score=31.00 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=62.2
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
..|+.++|++|+++..+.-...++.+...+.=-.-+=.+.. |+..+|++...+++.+.. . ....++-+..+||--
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~-~~~~~Ai~y~r~~l~~~~--~--~~~~~l~~~~~lL~~ 87 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLRE-GDIMEAIEYARKHLSPFN--D--EFLEELKKLMSLLAY 87 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHH-HhHHHHHHHHHHHhhhhH--H--HHHHHHHHHHHHHHc
Confidence 68999999999999976554444443433311112222334 489999999999885531 1 246667788898855
Q ss_pred HhhcC---Ccc---cccccHHHHHHHHHh
Q 026999 142 VYVRG---ELD---VFGNRLKVLADCVAD 164 (229)
Q Consensus 142 L~l~G---~~v---~vg~rW~~la~~~~~ 164 (229)
-.... ..+ --.+||+.|++....
T Consensus 88 ~~~~~~~~s~~~~l~~~~~~~~la~~~~~ 116 (145)
T PF10607_consen 88 PDPEEPLPSPYKELLSPERREELAEEFNS 116 (145)
T ss_pred CCcccccchHHHHHhChHHHHHHHHHHHH
Confidence 55443 110 002688888888776
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.79 E-value=5.4 Score=35.08 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA-----------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
+--+|+|.+|..-+.+||++.|--+--.-+ .++..+.+|.-..+++.-|+.-+ .... --|-.|-
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~--RRAeaye 179 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALE--RRAEAYE 179 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHH--HHHHHHH
Confidence 335677777777777777777766544333 46666777777777777333311 1111 2344555
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
... .||+|++=|...+..
T Consensus 180 k~e-k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KME-KYEEALEDYKKILES 197 (271)
T ss_pred hhh-hHHHHHHHHHHHHHh
Confidence 553 778888877777654
No 213
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.03 E-value=3.5 Score=23.95 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|-.+|..|..+| ++++|++.|.+.+.-
T Consensus 3 ~~~~lg~~y~~~~-~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLG-DYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 3446899999997 999999999887764
No 214
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=80.96 E-value=3.2 Score=43.64 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=53.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChhhHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~-~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+.+++++...+|+..+|++..++..+|.++-++++ .++|-+....|.+++|++.-|+--
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkG 76 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKG 76 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHH
Confidence 56788999999999999999999999999999997 999999999999999999777644
No 215
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.34 E-value=0.67 Score=43.19 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=68.8
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|.++.+.+...++++.+|....+|+-.+-++.+...-..|++=+..|++|||+.+-..-. .+|.++++...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 677888899999999999999999999999999999999999999999999999866554 78999998888887
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 208 a~k 210 (377)
T KOG1308|consen 208 ACK 210 (377)
T ss_pred HHh
Confidence 754
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.08 E-value=10 Score=31.25 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=67.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hhhHHH---------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHA---------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d-awA~Ha---------~~Gr~~egi~ 71 (229)
|+.+.+++...+++..-|..+-+++..|-++--.|+-++|..--.+||+|.-.- --+-|+ .+|+-+.+..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 788999999999999999999999999999999999999999999999996443 334444 6899999998
Q ss_pred HHHHchh
Q 026999 72 FMEECSS 78 (229)
Q Consensus 72 ~le~~~~ 78 (229)
-++.+-+
T Consensus 137 DFe~AA~ 143 (175)
T KOG4555|consen 137 DFEAAAQ 143 (175)
T ss_pred hHHHHHH
Confidence 8888866
No 217
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.51 E-value=14 Score=27.37 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh---hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 026999 42 EEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS---TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI 112 (229)
Q Consensus 42 e~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~---~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~ 112 (229)
.+..+++++-||+|.-+... ..|++++|++-+....+ +|... --+-.+ +.+|-+- | +-+..+.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~--~ar~~l---l~~f~~l-g-~~~plv~~ 80 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD--AARKRL---LDIFELL-G-PGDPLVSE 80 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC--HHHHHH---HHHHHHH---TT-HHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc--HHHHHH---HHHHHHc-C-CCChHHHH
Confidence 45568888999999877777 68899999888777754 34331 123344 5666544 3 55666666
Q ss_pred HHhhch
Q 026999 113 YDNHIW 118 (229)
Q Consensus 113 yd~~i~ 118 (229)
|.+.+.
T Consensus 81 ~RRkL~ 86 (90)
T PF14561_consen 81 YRRKLA 86 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 218
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.47 E-value=2.7 Score=34.45 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=45.4
Q ss_pred ChhhHHH--hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 55 DCWSQHA--HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 55 dawA~Ha--~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|++-- .+-+.++||..++.-.++=......-..++ +|+.|..+| +|+++++..|..+..+
T Consensus 38 lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyY---LAvg~yRlk-eY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 38 LAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYY---LAVGHYRLK-EYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhh---hHHHHHHHh-hHHHHHHHHHHHHhhC
Confidence 4566544 778899999999998762112222333445 999999998 9999999999988773
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.34 E-value=2.3 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILA 29 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~A 29 (229)
.|+.+++++..++++...|+++.+...+|
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 59999999999999999999998887776
No 220
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=77.82 E-value=15 Score=38.31 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=79.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hhhHHH------hhCCHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d-awA~Ha------~~Gr~~egi~~le 74 (229)
|++.+++..+.+++..+|+-.|+....|.++...|.+++|- ..-+|+..-|.+ --.+-+ ..|+.++++.+-+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 57889999999999999999999999999999999999999 556666655544 333333 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCH----HHHHHHHH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM----RKVLEIYD 114 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~----d~Al~~yd 114 (229)
++...++. .||.-|+=-+|..-+ .| ..|+++|.
T Consensus 102 ~~~~~~P~------eell~~lFmayvR~~-~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 102 RANQKYPS------EELLYHLFMAYVREK-SYKKQQKAALQLYK 138 (932)
T ss_pred HHHhhCCc------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99883333 455445555555543 44 46788886
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=23 Score=32.49 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=65.1
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHH-----------
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKE----------- 68 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~e----------- 68 (229)
+.+..+.+++|.- -.....-+..+.+.|++.+|......++...|+++-+.-. ..|++++
T Consensus 121 qlr~~ld~~~~~~---~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 121 QLRQFLDKVLPAE---EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHhcChH---HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 5667777777771 1223345667778888888888888888888888433332 2333322
Q ss_pred -----------HHHHHHHc---------hhhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 69 -----------AVQFMEEC---------SSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 69 -----------gi~~le~~---------~~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
-+++++++ .+.+...+ - .| .---+|..+...| ++|+|++.+=..+.+.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadP-d--d~~aa~~lA~~~~~~g-~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADP-D--DVEAALALADQLHLVG-RNEAALEHLLALLRRD 266 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-C--CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 24455444 22233322 1 12 2223788877776 9999999887777764
No 222
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.26 E-value=5.8 Score=29.54 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 8 ~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
.+..++.+..+|+|.-+..-+|-.+...|+|++|.+..-+.+.-+|+.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 4566777788999999999999999999999999999999999998873
No 223
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=6.8 Score=35.18 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=61.4
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+.+.-.|++-.+|.-+-....-|..+....+++..++-.+|||++.||..=++-. ....+++||.-|.++.
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3455667778888888877677788888888999999999999999999999877665 4667899999999985
Q ss_pred h
Q 026999 78 S 78 (229)
Q Consensus 78 ~ 78 (229)
.
T Consensus 106 s 106 (284)
T KOG4642|consen 106 S 106 (284)
T ss_pred H
Confidence 4
No 224
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.80 E-value=5.3 Score=35.17 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=65.0
Q ss_pred CChhHHHHHHHhhCCCCCC-----chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ-----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~-----~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
|++..+...-+++|..-|. .+-.++..|-++...+..+.|+..+-+||+|||...=|+-- ..-.+++++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 7888888888888887774 45788899999999999999999999999999988777765 347788888
Q ss_pred HHHHHchh
Q 026999 71 QFMEECSS 78 (229)
Q Consensus 71 ~~le~~~~ 78 (229)
.-+.+-..
T Consensus 189 eDyKki~E 196 (271)
T KOG4234|consen 189 EDYKKILE 196 (271)
T ss_pred HHHHHHHH
Confidence 88777766
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=76.34 E-value=83 Score=31.05 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=51.0
Q ss_pred hCCHHHHHHHHHHHHhhCCCChhhHHH---h-hCCHHHHHHHHHHchhh----ccC------------------CCCcch
Q 026999 35 LGQMSDAEEAAKKGLKINKHDCWSQHA---H-DCCFKEAVQFMEECSST----WSS------------------CSSFMY 88 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~-~Gr~~egi~~le~~~~~----w~~------------------~~~~~~ 88 (229)
..+..+-.++|++||++||+-+.|.-- . .--..|+.+.++++.+. +.. .++++
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~- 259 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV- 259 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh-
Confidence 446677788999999999987666554 2 23345555555554211 111 11111
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 89 THNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 89 ~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.-=.+|.+.-++| +.+||++.|...+.
T Consensus 260 -y~KrRLAmCarklG-r~~EAIk~~rdLlk 287 (539)
T PF04184_consen 260 -YAKRRLAMCARKLG-RLREAIKMFRDLLK 287 (539)
T ss_pred -hhHHHHHHHHHHhC-ChHHHHHHHHHHHh
Confidence 12224788888887 99999999977664
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.04 E-value=40 Score=30.72 Aligned_cols=130 Identities=19% Similarity=0.139 Sum_probs=77.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
-+++....+.|-|++.-++...++-+-.-..-| -.+...++.=..++.....+. ....-| +.|.+++
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---T~~lln--G~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---TPLLLN--GQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---ChHHHc--cHHHHHH
Confidence 345666777777788878877777654433222 234466776666665553322 212233 7999999
Q ss_pred hCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHH
Q 026999 101 EGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLL 177 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H 177 (229)
.+| +|++|..+....+.... ..+..++|-+-+ -.+.|.+.+|.+|-- .+. +...|..+|++=|
T Consensus 219 ~~~-~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~---a~~~Gkd~~~~~r~l--~QL---k~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 219 QLG-RYEEAESLLEEALDKDA-----KDPETLANLIVL---ALHLGKDAEVTERNL--SQL---KLSHPEHPFVKHL 281 (299)
T ss_pred Hhc-CHHHHHHHHHHHHhccC-----CCHHHHHHHHHH---HHHhCCChHHHHHHH--HHH---HhcCCcchHHHHH
Confidence 997 99999999999887732 235556665433 235677644444321 111 2335566677654
No 227
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.06 E-value=38 Score=32.38 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=75.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHH--------------HhhCCCChh-hHHH----
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKG--------------LKINKHDCW-SQHA---- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rA--------------L~LnP~daw-A~Ha---- 61 (229)
+||..+++..-.-+......++.+--.+|...-..|.|.+|+..+.+| ..+|-.--| ..|.
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 467777777666666655555555556666666778888888777664 222222222 1222
Q ss_pred -------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc
Q 026999 62 -------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH 128 (229)
Q Consensus 62 -------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~ 128 (229)
|.-.+.|||+...+-.. +||-+...| =-+||+|..+. -||-+-++.+..++.- .+++.
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alN-Vy~ALCyyKlD-Yydvsqevl~vYL~q~---pdSti 220 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALN-VYMALCYYKLD-YYDVSQEVLKVYLRQF---PDSTI 220 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhH-HHHHHHHHhcc-hhhhHHHHHHHHHHhC---CCcHH
Confidence 56667778877777766 454333332 23788888874 6665555555555542 22333
Q ss_pred hhhhhhHHHHHHHHh
Q 026999 129 PEVYLNALGLLLRVY 143 (229)
Q Consensus 129 ~~~~~Da~sLLwRL~ 143 (229)
...+ -++-+|||-
T Consensus 221 A~NL--kacn~fRl~ 233 (557)
T KOG3785|consen 221 AKNL--KACNLFRLI 233 (557)
T ss_pred HHHH--HHHHHhhhh
Confidence 3222 245567764
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.63 E-value=66 Score=31.51 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--hhCC-----HHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--HDCC-----FKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~~Gr-----~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
-|++-.-||+|.-++++.+||+..-|-..---+.+--.-- +.|| +-+.++.|+.....-..-.+. -.|+.-.
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~-s~~l~LF 84 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK-SAYLPLF 84 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC-chHHHHH
Confidence 3678889999999999999999999887766666544443 4454 344455555442211111211 1233345
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~ 174 (229)
.||..+..+ +|++|+..+..--.. +-++-|.+. ..+.+.+.+. .|.
T Consensus 85 ~~L~~Y~~k-~~~kal~~ls~w~~~------------~~~~~~~~L-----------d~ni~~l~~d----------f~l 130 (549)
T PF07079_consen 85 KALVAYKQK-EYRKALQALSVWKEQ------------IKGTESPWL-----------DTNIQQLFSD----------FFL 130 (549)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHhh------------hcccccchh-----------hhhHHHHhhH----------HHH
Confidence 888888887 999999887432211 112222221 1233333221 255
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 026999 175 DLLILWALANTGEVSKAEDLLKGLKSRHS 203 (229)
Q Consensus 175 d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 203 (229)
|=|.+=+|.++|+..+.+.+|.++..+.-
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 66777799999999999999999887653
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=74.31 E-value=30 Score=30.21 Aligned_cols=110 Identities=18% Similarity=0.062 Sum_probs=65.8
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh-hCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~-LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+..+...+.+..-|... -..-+|-.+.|.|+|.||+....+|++ +=-+|+--+-. ..+++.++...++.
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455555566665555322 223466789999999999999999986 33334322222 68999999999988
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
-.+.=+..- ....|+ -+|-.+-.+| .++.|...|+-.|
T Consensus 150 l~e~~pa~r-~pd~~L--l~aR~laa~g-~~a~Aesafe~a~ 187 (251)
T COG4700 150 LMEYNPAFR-SPDGHL--LFARTLAAQG-KYADAESAFEVAI 187 (251)
T ss_pred HhhcCCccC-CCCchH--HHHHHHHhcC-CchhHHHHHHHHH
Confidence 765211100 111333 2555544554 8886666655444
No 230
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.24 E-value=95 Score=30.72 Aligned_cols=174 Identities=18% Similarity=0.127 Sum_probs=101.7
Q ss_pred chhHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCChhh---HHH--------hhCCHHHHHHHHHHchhhccCCCCcch
Q 026999 21 EDFIFGILAFS-LLELGQMSDAEEAAKKGLKINKHDCWS---QHA--------HDCCFKEAVQFMEECSSTWSSCSSFMY 88 (229)
Q Consensus 21 ~~~~~g~~AF~-L~e~g~~d~Ae~~a~rAL~LnP~dawA---~Ha--------~~Gr~~egi~~le~~~~~w~~~~~~~~ 88 (229)
+..+.--+|=. ++||.++++||....||+.++.++..- ..+ .+-++..++..+++.++.... +..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~---~~~ 134 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSET---YGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc---cCc
Confidence 55666666664 458999999999999999999763322 111 466666699999999885555 212
Q ss_pred hhhHHHHHHH----HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc-CCcccccccHHHHHHHHH
Q 026999 89 THNWWHVALC----YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVA 163 (229)
Q Consensus 89 ~H~~WHlAL~----~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~-G~~v~vg~rW~~la~~~~ 163 (229)
.+..|+.-+. ++..+ |+..|++.++.-..-... .+ .....+=++=+-.-|.+. |.. .+..+.+.....
T Consensus 135 ~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~-~~--d~~~~v~~~l~~~~l~l~~~~~---~d~~~~l~~~~~ 207 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQ-RG--DPAVFVLASLSEALLHLRRGSP---DDVLELLQRAIA 207 (608)
T ss_pred hhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhh-cC--CHHHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHH
Confidence 2333443222 22334 899999999776655321 11 121111111111112221 211 233333333321
Q ss_pred hh---------hhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 026999 164 DQ---------ANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 164 ~~---------~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
.. .......|..+.-+.+....|+...+...|..++.....
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 112355677777788899999988889889988888755
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=73.71 E-value=20 Score=34.47 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHH--hCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 23 FIFGILAFSLLE--LGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 23 ~~~g~~AF~L~e--~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
-.+|..+.-++- .|.++.|...+++|-+..|+-+|+.-+ ..|+.++++..+++...
T Consensus 153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 153 RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 456666665544 678899999999999999999999988 68999999999988754
No 232
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.35 E-value=77 Score=31.38 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=85.6
Q ss_pred CChhHHHHHHHhhCCCCCC---------chhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCC------hhhHHH----
Q 026999 2 GRPDLCFDIIHQVLPYNQQ---------EDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHD------CWSQHA---- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~---------~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~d------awA~Ha---- 61 (229)
|+.++-++.-+|++.--|. |-|+--.+++ .=.+..+.++++++.++.|.|=|+- .|-+-|
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 7888999999999876543 3355555554 5556889999999999999999986 344444
Q ss_pred ---------------------------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHH
Q 026999 62 ---------------------------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 108 (229)
Q Consensus 62 ---------------------------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~ 108 (229)
..+.++......++.+. | +|- .+..|=-.|-+-..+| +.|.
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~---~Pe-~c~~W~kyaElE~~Lg-dtdR 489 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-F---SPE-NCYAWSKYAELETSLG-DTDR 489 (677)
T ss_pred HHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-c---ChH-hhHHHHHHHHHHHHhh-hHHH
Confidence 13344444444444444 2 222 3556667787777787 9999
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
|..||.-.|... .+|.--|||.-.+
T Consensus 490 aRaifelAi~qp-----------~ldmpellwkaYI 514 (677)
T KOG1915|consen 490 ARAIFELAISQP-----------ALDMPELLWKAYI 514 (677)
T ss_pred HHHHHHHHhcCc-----------ccccHHHHHHHhh
Confidence 999998888763 2566777776543
No 233
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.27 E-value=9.4 Score=28.17 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=32.7
Q ss_pred CChhHHHHHHHhhCCCC----C-----CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 026999 2 GRPDLCFDIIHQVLPYN----Q-----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH 54 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~----~-----~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~ 54 (229)
||..++++...+.+..- . ...+++..+|......|++++|....++|+.+-+.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 66666666666665531 1 12455555666666777777777777777766443
No 234
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.30 E-value=8.1 Score=36.56 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=59.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|.++++.|+-.+.+..+|-++..+...|.++.....+..||.-+..||+||..-.=|.-- ..|..+||..-.+.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~ 190 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET 190 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence 678889999999999999899889999999999999999999999999998766544433 45555566555555
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
..+
T Consensus 191 vL~ 193 (536)
T KOG4648|consen 191 VLA 193 (536)
T ss_pred HHh
Confidence 544
No 235
>PRK10941 hypothetical protein; Provisional
Probab=72.19 E-value=15 Score=32.91 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=54.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
++...++..+++.+-..|+++|-.-=.|+.+.+.|.+..|..=.+.-|+.+|+|+-+.
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 6788999999999999999999999999999999999999999999999999999664
No 236
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.02 E-value=62 Score=29.36 Aligned_cols=139 Identities=6% Similarity=-0.003 Sum_probs=84.4
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----hhC------------CHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDC------------CFKE 68 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----~~G------------r~~e 68 (229)
+.-+...+|||.++|++.-++-.+=-..++.-+-++-.+.-+++|..+|+++--+-. .++ -+.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 345677889999998766544333223345557777788899999999998766655 222 2344
Q ss_pred HHHHHHHchhhc----cCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCC---CchhhhhhHHHHH
Q 026999 69 AVQFMEECSSTW----SSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDA---VHPEVYLNALGLL 139 (229)
Q Consensus 69 gi~~le~~~~~w----~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~---~~~~~~~Da~sLL 139 (229)
.+..|......- .... ......+.+.++.|..+.| ..|.|+.++...+.-.+-.... ....+.++.-.-.
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG-~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~F 206 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG-YTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEF 206 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC-chHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 555554444321 0000 1123568899999988886 9999999998777544311111 1111455666666
Q ss_pred HHHhh
Q 026999 140 LRVYV 144 (229)
Q Consensus 140 wRL~l 144 (229)
|=-+.
T Consensus 207 WeS~v 211 (321)
T PF08424_consen 207 WESEV 211 (321)
T ss_pred hCcCC
Confidence 65433
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=71.58 E-value=6.9 Score=37.83 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=83.6
Q ss_pred CCChhHHHHHHHhhCCC---CCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---------CChhhHHH---h
Q 026999 1 MGRPDLCFDIIHQVLPY---NQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINK---------HDCWSQHA---H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~---~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP---------~dawA~Ha---~ 62 (229)
+||++++...-+.-+.. +++ .-.+++.+|-.+...|+++-|.+..+++|.|.- ..++++-. .
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 47777776665555543 222 336788888888889999999998888765532 23444433 3
Q ss_pred hCCHHHHHHHHHHchhhccCCCCcc-hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~~~-~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
...++.||.+-.+....-+.++..+ -.--.|-++..|-.+| ..++|+.....++....
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg-~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG-EHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 5578999999888855444444322 2447899999999997 88999998888877644
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.16 E-value=6.9 Score=35.79 Aligned_cols=130 Identities=20% Similarity=0.250 Sum_probs=79.2
Q ss_pred CChhHHHHHHHhhCCCC-CCchhHHHHHHHHHHHhCCHHHHHHHHHH----HHhhCC-CChhhHHH-------hhCCHHH
Q 026999 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKINK-HDCWSQHA-------HDCCFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~-~~~~~~~g~~AF~L~e~g~~d~Ae~~a~r----AL~LnP-~dawA~Ha-------~~Gr~~e 68 (229)
|++.-.++...+++..+ |.++....-++=+-++-|+...|+..+++ +=.||- .+.--+|- -+.++.+
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 44455566666777765 68888888888888888888888777773 222221 22333333 3667777
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 139 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL 139 (229)
+..+.++..+.=++ ++ ..-| ..||+.+-+| +...|++.....+.. ++.....--.++|-+++.
T Consensus 271 a~r~~~~i~~~D~~-~~--~a~N--nKALcllYlg-~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 271 AHRFFTEILRMDPR-NA--VANN--NKALCLLYLG-KLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHhhccccCCC-ch--hhhc--hHHHHHHHHH-HHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHH
Confidence 87777777653222 21 2222 3788877776 788888888777766 233222222356666653
No 239
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.44 E-value=33 Score=25.21 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
++|..+...| ++++|+..+++.|.-..
T Consensus 46 ~lA~~~~~~G-~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 46 NLAELHRRFG-HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 4888888987 99999999999988754
No 240
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.43 E-value=65 Score=29.62 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=46.4
Q ss_pred CChhHHHHHHHhhCCCC------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~eg 69 (229)
||.+.|-...++|--.. ...-.++-..+|++.-.++|..|-....+-+..+|.|+-+..+ +.|+..+|
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 55555555544443221 1233455566666666666666666666667777777666666 66777777
Q ss_pred HHHHHHchh
Q 026999 70 VQFMEECSS 78 (229)
Q Consensus 70 i~~le~~~~ 78 (229)
+.-|++..+
T Consensus 306 iK~~e~~~~ 314 (366)
T KOG2796|consen 306 LKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhc
Confidence 777776665
No 241
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=69.44 E-value=8 Score=34.86 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~ 82 (229)
.++..+=-.+.++++++.|...+.+-|.+||+|++-+-. ..|...-++.-++...+.-++
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 445555557889999999999999999999999976655 567777777777776653333
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.24 E-value=61 Score=29.42 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=76.8
Q ss_pred HHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hhCCHHHHHHH
Q 026999 9 DIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HDCCFKEAVQF 72 (229)
Q Consensus 9 ~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~Gr~~egi~~ 72 (229)
....+....|..|+ -.++--|.++-...+|++|.-.-++|.+---|+.--.|+ ....+.|++.+
T Consensus 14 e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl 93 (308)
T KOG1585|consen 14 EMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDL 93 (308)
T ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444454433 345555667778899999999999999666666656666 35678999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+++..-+..+++-.+.-.-=-.|-=.++.- +-|+|+.+|.+.+.--
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv-~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENV-KPDDALQLYQRALAVV 140 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 9999988888876544332222333346765 7899999998877653
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.01 E-value=22 Score=33.97 Aligned_cols=177 Identities=14% Similarity=0.028 Sum_probs=104.8
Q ss_pred CCChhHHHHHHHhhCCC--CCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-hhHHH------------
Q 026999 1 MGRPDLCFDIIHQVLPY--NQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-WSQHA------------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da-wA~Ha------------ 61 (229)
||-+.+++++.++++.. .-+|+ .+.--++--+....+|++|.-...+|++|-.+-. --+|.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 35567888888888773 33444 2333444446667899999999999999876543 12222
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCcchhh--hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSFMYTH--NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~~~~H--~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~ 136 (229)
++|+.-+|.+.-+++..---..++. +.| -.=-+|..|-++| |.|.|..-|+..+..-..-.+.+.-.+.+|.+
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdr-a~~arc~~~~aDIyR~~g-d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~ 292 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDR-ALQARCLLCFADIYRSRG-DLERAFRRYEQAMGTMASLGDRMGQVEALDGA 292 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 7899888888887775421111211 222 2234788888987 99999999998877632212222222234444
Q ss_pred HHHH---HHhhcCCc---ccccccHHHHHHHHHhhhhccccchhhHHHHHHHhc
Q 026999 137 GLLL---RVYVRGEL---DVFGNRLKVLADCVADQANWYLECHLDLLILWALAN 184 (229)
Q Consensus 137 sLLw---RL~l~G~~---v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ 184 (229)
+=-| |++=.|.. .++-.|-.+|+...-.+ +. -..+|-.++...
T Consensus 293 Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K---~~--vlK~hcrla~iY 341 (518)
T KOG1941|consen 293 AKCLETLRLQNKICNCRALEFNTRLLEVASSIGAK---LS--VLKLHCRLASIY 341 (518)
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhh---HH--HHHHHHHHHHHH
Confidence 4332 44444432 23446777777665542 21 345666666554
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=67.91 E-value=53 Score=31.04 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=62.2
Q ss_pred ChhHHHHHHHhhCCC----CCCchhHHHHHHHHHHH---hCCHHHHHHHHHHHHhhC-CCChh--hHHH-------h---
Q 026999 3 RPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLE---LGQMSDAEEAAKKGLKIN-KHDCW--SQHA-------H--- 62 (229)
Q Consensus 3 ~~~~~~~~~~ralp~----~~~~~~~~g~~AF~L~e---~g~~d~Ae~~a~rAL~Ln-P~daw--A~Ha-------~--- 62 (229)
|.+.|..+++..-+. .+..+.+...+||+|-. .|+.++|.......|.-. +.++. ++.. .
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~ 235 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN 235 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC
Confidence 567788887765554 45678899999999999 999999999999965443 34443 3333 1
Q ss_pred ---hCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCC
Q 026999 63 ---DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 103 (229)
Q Consensus 63 ---~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g 103 (229)
....++||.|-.+. |...+...++-| +|....-.|
T Consensus 236 ~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN---~AtLL~~~g 273 (374)
T PF13281_consen 236 FTDRESLDKAIEWYRKG---FEIEPDYYSGIN---AATLLMLAG 273 (374)
T ss_pred ccchHHHHHHHHHHHHH---HcCCccccchHH---HHHHHHHcC
Confidence 22356677666654 334444556666 666555555
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.43 E-value=26 Score=31.35 Aligned_cols=119 Identities=11% Similarity=0.104 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
+..+..-|-.....|+|++|....++.....|.++|+--+ ..|++++|+..+++.++..++.++.. ...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d--Y~~ 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD--YAY 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh--HHH
Confidence 3455666777889999999999999999999999999777 68999999999999999887755432 233
Q ss_pred HHHHHHHHhCC----CC---HHHHHHHHHhhchhhccCCCCCchhhhhhHHH--HHHHHhhcCCc
Q 026999 93 WHVALCYLEGH----SP---MRKVLEIYDNHIWKELEKPDAVHPEVYLNALG--LLLRVYVRGEL 148 (229)
Q Consensus 93 WHlAL~~l~~g----g~---~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~s--LLwRL~l~G~~ 148 (229)
--.+|.++..= .| ..+|..-+++.|.+- .+|. + -.||-. -..+..|.|.+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-Y--a~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-Y--APDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-c--hhhHHHHHHHHHHHHHHHH
Confidence 34666665521 02 335566666666653 2222 2 233333 33555666654
No 246
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.38 E-value=18 Score=29.25 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHhhCCCC-------CCch--h--HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 026999 1 MGRPDLCFDIIHQVLPYN-------QQED--F--IFGILAFSLLELGQMSDAEEAAKKGLKI 51 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~-------~~~~--~--~~g~~AF~L~e~g~~d~Ae~~a~rAL~L 51 (229)
+|+++.++.++.++|... .+.. | +-...|.+|+++|+.++|.+..+.|-++
T Consensus 68 Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 68 LGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 689999999999999852 2222 2 3445677999999999999999998764
No 247
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.53 E-value=19 Score=29.80 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh
Q 026999 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW 57 (229)
Q Consensus 8 ~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw 57 (229)
++..++.+..+| ++.++..++.++..+|+.++|+...+++..+=|.+.+
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 344444443333 5555556666666666666666666666666664433
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=63.99 E-value=1.5e+02 Score=28.84 Aligned_cols=170 Identities=19% Similarity=0.129 Sum_probs=100.6
Q ss_pred CChhHHHHHHHhhCCC---CC-----CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH
Q 026999 2 GRPDLCFDIIHQVLPY---NQ-----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK 67 (229)
Q Consensus 2 G~~~~~~~~~~ralp~---~~-----~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~ 67 (229)
||.+.++.++...... -+ .-.-++.-.+..+... +...|...+.+|+.|.|+..-+.-. .+|+..
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh
Confidence 7788888877655442 11 2345666666666544 5778999999999999999665544 799999
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHh--hc
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY--VR 145 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~--l~ 145 (229)
+|-..+|.+=+ . .|+.. +++.|.... --|.+++-.++.-.-..-|++ ++-|+|-+-+ |.
T Consensus 281 Kg~~ilE~aWK---~-ePHP~------ia~lY~~ar-~gdta~dRlkRa~~L~slk~n--------naes~~~va~aAld 341 (531)
T COG3898 281 KGSKILETAWK---A-EPHPD------IALLYVRAR-SGDTALDRLKRAKKLESLKPN--------NAESSLAVAEAALD 341 (531)
T ss_pred hhhhHHHHHHh---c-CCChH------HHHHHHHhc-CCCcHHHHHHHHHHHHhcCcc--------chHHHHHHHHHHHh
Confidence 99999987644 4 44533 566666644 336777766554433323332 5666665554 44
Q ss_pred CCcccccccH-HHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHH
Q 026999 146 GELDVFGNRL-KVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKG 197 (229)
Q Consensus 146 G~~v~vg~rW-~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~ 197 (229)
+.+. +..|= .+.+....+ ...|.=+-+=+.=+-+||...++++|..
T Consensus 342 a~e~-~~ARa~Aeaa~r~~p-----res~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 342 AGEF-SAARAKAEAAAREAP-----RESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred ccch-HHHHHHHHHHhhhCc-----hhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 4431 12221 112222222 2223233333456677888888887754
No 249
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.88 E-value=11 Score=35.23 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=55.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
|..+.+....+-++...|.++.++--+|--.++.++.-+|-...-|||.+.|.+.-|+-.
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 677888899999999999999999999999999999999999999999999999988876
No 250
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=63.69 E-value=13 Score=36.06 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHhhCCCCC------CchhHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhCCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQ--------------------MSDAEEAAKKGLKINKH 54 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~------~~~~~~g~~AF~L~e~g~--------------------~d~Ae~~a~rAL~LnP~ 54 (229)
+|.++.++..+.|.+..-. ..+.++..+|-++.+.|+ +..|.+....-|++-..
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999887532 355677777777766553 33455556666666666
Q ss_pred ChhhHHH------------hhCCHHHHHHHHHHchhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 55 DCWSQHA------------HDCCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 55 dawA~Ha------------~~Gr~~egi~~le~~~~~w~~~---~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
......- -.|+++.+|.+=+.....-..- ....+.|- .++-+|+.+| +++-|.+.|+..+.-
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s--NlgN~hiflg-~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS--NLGNCHIFLG-NFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc--ccchhhhhhc-ccHhHHHHHHHHHHH
Confidence 5554443 4899999999877764322211 12234452 4889999997 999999999876654
No 251
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.70 E-value=19 Score=29.54 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=41.4
Q ss_pred HHHHHHhhCC-CCCC-chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 7 CFDIIHQVLP-YNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 7 ~~~~~~ralp-~~~~-~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
-....+..++ ..|+ .-.-+.++|+++-..++|+++.+..+.-|+.+|||..|.--
T Consensus 54 GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 54 GIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3444555555 3443 33455689999999999999999999999999999877544
No 252
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.99 E-value=1.1e+02 Score=33.24 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=90.8
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 111 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~ 111 (229)
-.+++-|++|-+..++ ..+|-.-.-.+--.-|..+.|.+|.+++.. --+|-.+|-+.|..| ...+|++
T Consensus 1058 ai~~~LyEEAF~ifkk-f~~n~~A~~VLie~i~~ldRA~efAe~~n~----------p~vWsqlakAQL~~~-~v~dAie 1125 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKK-FDMNVSAIQVLIENIGSLDRAYEFAERCNE----------PAVWSQLAKAQLQGG-LVKDAIE 1125 (1666)
T ss_pred HhhhhHHHHHHHHHHH-hcccHHHHHHHHHHhhhHHHHHHHHHhhCC----------hHHHHHHHHHHHhcC-chHHHHH
Confidence 4466677777766654 122211111111167888888888887654 135677999999975 9999988
Q ss_pred HHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHH
Q 026999 112 IYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKA 191 (229)
Q Consensus 112 ~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~ 191 (229)
-|=+ . ++.+.+.+.+|++|= ...|++|..++.---...-.+..|--.++|++++++..++
T Consensus 1126 Syik---a----dDps~y~eVi~~a~~-------------~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1126 SYIK---A----DDPSNYLEVIDVASR-------------TGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHh---c----CCcHHHHHHHHHHHh-------------cCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHH
Confidence 7733 2 222347777787751 3569999999876444555678899999999999999888
Q ss_pred HHHHHH
Q 026999 192 EDLLKG 197 (229)
Q Consensus 192 ~~ll~~ 197 (229)
+++|.+
T Consensus 1186 E~fi~g 1191 (1666)
T KOG0985|consen 1186 EEFIAG 1191 (1666)
T ss_pred HHHhcC
Confidence 887753
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.23 E-value=1.2e+02 Score=31.84 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=65.7
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-----------ChhhHHH----hhCCHHHHHHHHHHchhhccCCC
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-----------DCWSQHA----HDCCFKEAVQFMEECSSTWSSCS 84 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~-----------dawA~Ha----~~Gr~~egi~~le~~~~~w~~~~ 84 (229)
++|-+--..||.+.-.++|++|+....++-.--|. ..-|+-+ .+|+++++.+..+.+...-+..-
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 46666678899999999999999998887766555 2223333 89999999999999977555533
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 85 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 85 ~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
++...-..=-++..+.=+| ++++|+.+...
T Consensus 493 ~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~ 522 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRG-ELTQALALMQQ 522 (894)
T ss_pred chhhhhhhhhhhHHHHHhc-hHHHHHHHHHH
Confidence 3322222233565555555 89988877644
No 254
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.22 E-value=22 Score=33.45 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHHHHhhCCC--CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 7 CFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 7 ~~~~~~ralp~--~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
.+..++..... -.+|..+|+..|=-|...|+.++|.+.++||++|.+|.+-..+
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 34444444443 3467788999999999999999999999999999999875433
No 255
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=59.21 E-value=27 Score=31.50 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=53.0
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+.+.+...++|.+-.+|.++|-.-=-|+++.+.|.+.-|.+-....++..|+++.+--.
T Consensus 196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 45678899999999999999999999999999999999999999999999999977544
No 256
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.43 E-value=51 Score=30.87 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=41.1
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
..|++++++.-...+.. -+.+-+ -+...+||+|+..| +|+.|++....-|.++.
T Consensus 156 kegqyEaAvqkFqaAlq----vsGyqp-llAYniALaHy~~~-qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQ----VSGYQP-LLAYNLALAHYSSR-QYASALKHISEIIERGI 209 (459)
T ss_pred ccccHHHHHHHHHHHHh----hcCCCc-hhHHHHHHHHHhhh-hHHHHHHHHHHHHHhhh
Confidence 68999999988888876 232322 23345999999997 99999999977776653
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.56 E-value=51 Score=30.28 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=71.3
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
..|++.++...+..+...++..+. ..-. +|.++++.| +.++|..+++..=.... .+ -...+.=-..||=|
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~--~~~~---la~~~l~~g-~~e~A~~iL~~lP~~~~--~~--~~~~l~a~i~ll~q 215 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSE--AKLL---LAECLLAAG-DVEAAQAILAALPLQAQ--DK--AAHGLQAQIELLEQ 215 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccch--HHHH---HHHHHHHcC-ChHHHHHHHHhCcccch--hh--HHHHHHHHHHHHHH
Confidence 568889999999999887777332 2233 899999997 99999999999755521 11 01111112444444
Q ss_pred HhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcH-HHHHHHHHHHHH
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS-KAEDLLKGLKSR 201 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~-~~~~ll~~~~~~ 201 (229)
+.-.+ .-.++-..+..-.+++-..| -.+..+...|+.+ +++.|+.-+++-
T Consensus 216 aa~~~-------~~~~l~~~~aadPdd~~aa~---~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 216 AAATP-------EIQDLQRRLAADPDDVEAAL---ALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HhcCC-------CHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33322 34455555555444444333 3345555566654 456666666653
No 258
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=57.43 E-value=49 Score=33.79 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=55.9
Q ss_pred HHhhCCCChhhHHH----hhCCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 48 GLKINKHDCWSQHA----HDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 48 AL~LnP~dawA~Ha----~~Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|.-||++.--+|- ++|++.+-+.-..++...++.--.. -++-+||-+|-+|-..| +.+.|..+|++.+--
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~-~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG-DLDDARVIFEKATKV 416 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC-cHHHHHHHHHHhhcC
Confidence 56678888888888 8999999999999998876542221 12449999999987775 999999999887654
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=56.62 E-value=1.1e+02 Score=25.26 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCc-chhhhHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWW 93 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~-~~~H~~W 93 (229)
++--+|-=+...|+++.|.+...++.+-......-++. ..|++.....+++++...-...++- ...-+-=
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44445556889999999999999988877666665554 6899988888888885543332210 0111111
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
--||+++..+ +|.+|-..|-..+..
T Consensus 118 ~~gL~~l~~r-~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGLANLAQR-DFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHhc-hHHHHHHHHHccCcC
Confidence 3789999987 999999999665543
No 260
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.36 E-value=19 Score=31.40 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=41.9
Q ss_pred HHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
...-|+.++++...+...+. .+..++.|.+|-.|+..| +|++|++.|+.....
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g-~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLG-DYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 34557888888877775443 566789999999999997 999999999776443
No 261
>PF12854 PPR_1: PPR repeat
Probab=55.98 E-value=29 Score=20.72 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKK 47 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~r 47 (229)
.|.+.++.+=-++...|++++|+++.++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566777777788999999999988764
No 262
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.79 E-value=16 Score=20.26 Aligned_cols=23 Identities=13% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhhCCCChhh
Q 026999 36 GQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 36 g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
|+.++|....++++...|+++-.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~ 23 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVEL 23 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHH
Confidence 56778888888888888876543
No 263
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=55.17 E-value=3.5e+02 Score=30.39 Aligned_cols=136 Identities=10% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH
Q 026999 41 AEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 113 (229)
Q Consensus 41 Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~y 113 (229)
-.+.++||...+ ||+-+|. -.+.+++|.+.|+.....+.+ ..-+|=-++-+.|... +-++|.++.
T Consensus 1516 l~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-----~~~vW~~y~~fLl~~n-e~~aa~~lL 1587 (1710)
T KOG1070|consen 1516 LKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-----TRKVWIMYADFLLRQN-EAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-----hhhHHHHHHHHHhccc-HHHHHHHHH
Confidence 444555555443 4555555 355666666666666664442 1123334555555543 556666666
Q ss_pred HhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc----HHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcH
Q 026999 114 DNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR----LKVLADCVADQANWYLECHLDLLILWALANTGEVS 189 (229)
Q Consensus 114 d~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r----W~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~ 189 (229)
.+.+.- .+-++=++-.|=.--|++.--| .+| |+.+.....+|.+ -.....|+ =.+.|+.+
T Consensus 1588 ~rAL~~-------lPk~eHv~~IskfAqLEFk~GD---aeRGRtlfEgll~ayPKRtD-lW~VYid~-----eik~~~~~ 1651 (1710)
T KOG1070|consen 1588 KRALKS-------LPKQEHVEFISKFAQLEFKYGD---AERGRTLFEGLLSAYPKRTD-LWSVYIDM-----EIKHGDIK 1651 (1710)
T ss_pred HHHHhh-------cchhhhHHHHHHHHHHHhhcCC---chhhHHHHHHHHhhCccchh-HHHHHHHH-----HHccCCHH
Confidence 555543 1233445666666667776554 445 5554443332222 11122232 24677777
Q ss_pred HHHHHHHHHHH
Q 026999 190 KAEDLLKGLKS 200 (229)
Q Consensus 190 ~~~~ll~~~~~ 200 (229)
-++.|.+++=.
T Consensus 1652 ~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1652 YVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHHHHHh
Confidence 78877776543
No 264
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.95 E-value=1.7e+02 Score=26.66 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|..+++.+.-++.+..+|.+--.+--.=-++--+|+--+|++.--.=|+.=|+|.-|+|- ..|.++.|+=-+|
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3677888899999999999887666544446667887779999999999999999999998 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCC--CHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHS--PMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg--~~d~Al~~yd~~i~~ 119 (229)
+.+= .+||-|..+ =-+|-.++-.|| +++-+.+.|.+.+--
T Consensus 179 E~ll----~~P~n~l~f-~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLL----IQPFNPLYF-QRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHH----cCCCcHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9976 566633221 123333333332 455667777665543
No 265
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.41 E-value=16 Score=32.73 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
+..+.+.|+++.|-++..+||++.|..+-.+-- ..|+++.+.+-.+++.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 345678999999999999999999998766665 58999999999999877
No 266
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=54.22 E-value=30 Score=21.77 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln 52 (229)
.++-.+|=+-.|+++|++|.+=.+++|+|.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356677778889999999999999999875
No 267
>PF13041 PPR_2: PPR repeat family
Probab=52.27 E-value=22 Score=22.63 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHhCCCCHHHHHHHHHhhchhhc
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
.+...| ++++|+++|++....+.
T Consensus 12 ~~~~~~-~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 12 GYCKAG-KFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHCc-CHHHHHHHHHHHHHcCC
Confidence 345665 99999999999987765
No 268
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.45 E-value=12 Score=36.24 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=41.0
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
+++.+.++..+++..+|+.+-+.+..|+++.-.++|..|..=+-+|++++|...=+.+- -.|++.+++.-++.+
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555555555555444443 244555555555544
Q ss_pred hh
Q 026999 77 SS 78 (229)
Q Consensus 77 ~~ 78 (229)
..
T Consensus 99 ~~ 100 (476)
T KOG0376|consen 99 KK 100 (476)
T ss_pred hh
Confidence 43
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=51.06 E-value=81 Score=26.18 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=57.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhh-------h
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQ-------A 166 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~-------~ 166 (229)
-+|.+|...| |+++|++.|.+. ... . ......+|.+=-+-|+.+.-. .|..|..+..+- .
T Consensus 41 ~l~~~~~~~G-d~~~A~k~y~~~-~~~---~--~~~~~~id~~l~~irv~i~~~------d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 41 DLADHYCKIG-DLEEALKAYSRA-RDY---C--TSPGHKIDMCLNVIRVAIFFG------DWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHH-hhh---c--CCHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHhccc
Confidence 4899999997 999999999873 332 2 346668888877878777644 476666665442 1
Q ss_pred hccccchhhHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 026999 167 NWYLECHLDLLILWALANTGEV-SKAEDLLKGLKSR 201 (229)
Q Consensus 167 ~~~~~~F~d~H~~~al~~ag~~-~~~~~ll~~~~~~ 201 (229)
++.......+-..++..+.++. .+++.+|+..-.+
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1222222333444555555554 4455555555444
No 270
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.79 E-value=37 Score=33.58 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP--~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
-++..+|-++.-.|+||+|.+..-.|..+-| .++-|.-. |.|+...|+..+.++.- . ||.++|
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~----~-~~v~~~ 690 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH----V-SFVPGR 690 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc----c-cccCcc
Confidence 4778899999999999999999999999888 55555444 89999999999998865 2 366665
No 271
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=24 Score=31.72 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=46.7
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
+.+.....+.|++...|+..-.|.+++-++.+...|++|+..-.||..+-.+.
T Consensus 59 ~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 59 HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 45677788999999999999999999999999999999999999997765443
No 272
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.80 E-value=27 Score=23.53 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|+.++.+| +|++|++..+..+.-
T Consensus 6 ~lAig~ykl~-~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 6 YLAIGHYKLG-EYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHhh
Confidence 5899999997 999999999998876
No 273
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=1.8e+02 Score=29.43 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=67.0
Q ss_pred CChhHHHHHHHhhCCC---------CC------------C-chhHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCC-Ch
Q 026999 2 GRPDLCFDIIHQVLPY---------NQ------------Q-EDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKH-DC 56 (229)
Q Consensus 2 G~~~~~~~~~~ralp~---------~~------------~-~~~~~g~~AF--~L~e~g~~d~Ae~~a~rAL~LnP~-da 56 (229)
||...+.++|+|+|=. .| . -.+++.++-. .+...|.+.-|-+.++--|.|+|. ||
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc
Confidence 7889999999998632 11 1 1234444433 677899999999999999999999 99
Q ss_pred hhHHH---hhCCHHHHHHHHHHchhhcc------CCCCcchhhhHHHHHHHHHhCCCC---HHHHHHHHHhhc
Q 026999 57 WSQHA---HDCCFKEAVQFMEECSSTWS------SCSSFMYTHNWWHVALCYLEGHSP---MRKVLEIYDNHI 117 (229)
Q Consensus 57 wA~Ha---~~Gr~~egi~~le~~~~~w~------~~~~~~~~H~~WHlAL~~l~~gg~---~d~Al~~yd~~i 117 (229)
.+.-. .-.--.+=.+|+.+....|. ..++|.++.- +|.+|+... + -+.|+..+.+.+
T Consensus 378 l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A---lA~f~l~~~-~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 378 LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA---LARFFLRKN-EEDDRQSALNALLQAL 446 (665)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH---HHHHHHhcC-ChhhHHHHHHHHHHHH
Confidence 98877 11111112334444433332 2233444434 888888843 3 234444444433
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.81 E-value=88 Score=31.79 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=90.9
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------hhCCHHHHHHHHHHchh
Q 026999 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 9 ~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------~~Gr~~egi~~le~~~~ 78 (229)
..+.-.+...+..|++|.|-+|=.--.|..-+|...+++|+-+-|.. +-|. ..|+..+|--.|..+..
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h--~kdi~lLSlaTiL~RaG~sadA~iILhAA~~ 277 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH--NKDIALLSLATVLHRAGFSADAAVILHAALD 277 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc--cccchhhhHHHHHHHcccccchhheeehhcc
Confidence 34556677789999999999999999999999999999999998872 1222 68999998888877776
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 79 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 79 ~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
..+++. =|.--++-.+..+| +|-..+--||.....+ +..-+.....-+++|-+-||+=.
T Consensus 278 ----dA~~~t-~n~y~l~~i~aml~-~~N~S~~~ydha~k~~--p~f~q~~~q~~~~ISC~~~L~~k 336 (886)
T KOG4507|consen 278 ----DADFFT-SNYYTLGNIYAMLG-EYNHSVLCYDHALQAR--PGFEQAIKQRKHAISCQQKLEQK 336 (886)
T ss_pred ----CCcccc-ccceeHHHHHHHHh-hhhhhhhhhhhhhccC--cchhHHHHHHHHHHHHHHHHHHH
Confidence 233322 23335777778886 8998888888655442 12212233346888888887654
No 275
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=45.35 E-value=1e+02 Score=24.14 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=41.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH-----------hhCCHHHHHHHHHHchhhccC
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA-----------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha-----------~~Gr~~egi~~le~~~~~w~~ 82 (229)
|..+-+.|++-+|.+..+..+..++++. |-+|. .+.+++--..++..+.+.++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~ 69 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSR 69 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHH
Confidence 5567789999999999999999999986 77777 244566666777777665544
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.93 E-value=2e+02 Score=23.89 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=55.3
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh--hHHHHHHHHHhCCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH--NWWHVALCYLEGHSP 105 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H--~~WHlAL~~l~~gg~ 105 (229)
..++.+.++.+...--.|.|+.+-.--. .+|++.+|+..+++... ..+..+.. + +|+|+..+|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~----~~~~~p~~kAL---lA~CL~~~~-- 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE----RAPGFPYAKAL---LALCLYALG-- 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc----cCCCChHHHHH---HHHHHHHcC--
Confidence 4569999999988888999998843333 79999999999999866 34433433 4 777777765
Q ss_pred HHHHHHHHHhhchh
Q 026999 106 MRKVLEIYDNHIWK 119 (229)
Q Consensus 106 ~d~Al~~yd~~i~~ 119 (229)
|...+.|-..+..
T Consensus 93 -D~~Wr~~A~evle 105 (160)
T PF09613_consen 93 -DPSWRRYADEVLE 105 (160)
T ss_pred -ChHHHHHHHHHHh
Confidence 4567777665554
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.91 E-value=1.1e+02 Score=29.24 Aligned_cols=141 Identities=13% Similarity=-0.015 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH
Q 026999 36 GQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV 109 (229)
Q Consensus 36 g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~A 109 (229)
|.+-+|-..=++-|.--|.|--|+-. +.|+...-...+++-.+.|+.+-|. +..+-=-+|....+.| -|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~-~sYv~GmyaFgL~E~g-~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC-YSYVHGMYAFGLEECG-IYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH-HHHHHHHHHhhHHHhc-cchhH
Confidence 33444444445777778888766644 8999999999999999999985543 2222223778888997 99999
Q ss_pred HHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccc-------ccccHHHHHHHHHhhhhccccchhhHHHHHHH
Q 026999 110 LEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV-------FGNRLKVLADCVADQANWYLECHLDLLILWAL 182 (229)
Q Consensus 110 l~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~-------vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al 182 (229)
.+.-|+.+.-.. .+ -=-.-++---|++.|---+ -.+.|. -..... ..|=.|.++.+
T Consensus 195 Ek~A~ralqiN~--~D------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mla--------sHNyWH~Al~~ 257 (491)
T KOG2610|consen 195 EKQADRALQINR--FD------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLA--------SHNYWHTALFH 257 (491)
T ss_pred HHHHHhhccCCC--cc------hHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHH--------hhhhHHHHHhh
Confidence 999999877631 11 1111223334677764210 125565 222222 24566777777
Q ss_pred hcCCCcHHHHHHH
Q 026999 183 ANTGEVSKAEDLL 195 (229)
Q Consensus 183 ~~ag~~~~~~~ll 195 (229)
.-.+..+.+.+.-
T Consensus 258 iE~aeye~aleIy 270 (491)
T KOG2610|consen 258 IEGAEYEKALEIY 270 (491)
T ss_pred hcccchhHHHHHH
Confidence 7777766665443
No 278
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.41 E-value=2e+02 Score=27.49 Aligned_cols=118 Identities=23% Similarity=0.238 Sum_probs=69.5
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChh--------hHHH--------------
Q 026999 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCW--------SQHA-------------- 61 (229)
Q Consensus 9 ~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~daw--------A~Ha-------------- 61 (229)
..+..++..+|.-+-++-.+| -+|.--..+||+..++||.. +.+..- ++|-
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLA 282 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLA--EEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLA 282 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHH
Confidence 344556667776555554443 45556788899998888863 222222 3332
Q ss_pred ----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCC--CCHHHHHHHHHhhchhhccCCCCCchhhhhhH
Q 026999 62 ----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH--SPMRKVLEIYDNHIWKELEKPDAVHPEVYLNA 135 (229)
Q Consensus 62 ----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g--g~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da 135 (229)
.+||..|++..+..-.+..+- .+++-.|- ++--..|+.. .|...++.-||.---| | +..++-.
T Consensus 283 MCARklGrlrEA~K~~RDL~ke~pl-~t~lnihe--NLiEalLE~QAYADvqavLakYDdislP---k-----SA~icYT 351 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHE--NLLEALLELQAYADVQAVLAKYDDISLP---K-----SAAICYT 351 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccccCc---c-----hHHHHHH
Confidence 489999999999999886553 33444441 2444445543 1445566667643222 2 3346777
Q ss_pred HHHH
Q 026999 136 LGLL 139 (229)
Q Consensus 136 ~sLL 139 (229)
++||
T Consensus 352 aALL 355 (556)
T KOG3807|consen 352 AALL 355 (556)
T ss_pred HHHH
Confidence 7775
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=36.76 E-value=44 Score=31.83 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=43.1
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
+..+..-|..++..+..|--+++-.+-+..+.|...+|.+-++++|+|+|++.
T Consensus 147 FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 147 FAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 34455556667777777777888888889999999999999999999999954
No 280
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=36.17 E-value=53 Score=18.16 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHhCCCCHHHHHHHHHhhchhh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|...| ++++|+++|+......
T Consensus 10 ~~~~~-~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 10 LCKAG-RVEEALELFKEMLERG 30 (35)
T ss_pred HHHCC-CHHHHHHHHHHHHHcC
Confidence 34555 9999999998877654
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.48 E-value=1.7e+02 Score=25.51 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH
Q 026999 43 EAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 113 (229)
Q Consensus 43 ~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~y 113 (229)
..+++=..-||...+|.-+ ..|++++|+.-|......=.+ ..+ -...-=-+|-..+..| .+|+|+++.
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~l-k~l~~lRLArvq~q~~-k~D~AL~~L 149 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-ENL-KALAALRLARVQLQQK-KADAALKTL 149 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-HHH-HHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 3344555667788888777 689999999999977642222 222 3333334788888887 999999888
Q ss_pred Hhhc
Q 026999 114 DNHI 117 (229)
Q Consensus 114 d~~i 117 (229)
|+..
T Consensus 150 ~t~~ 153 (207)
T COG2976 150 DTIK 153 (207)
T ss_pred hccc
Confidence 6633
No 282
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=34.90 E-value=1.8e+02 Score=22.84 Aligned_cols=61 Identities=10% Similarity=0.232 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHh------CCH-----HHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLEL------GQM-----SDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~------g~~-----d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.||...+++.++..+...+++. .+|...|-++.+. -+. -.+.+.+.++..|.|+.+-.++.
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~ 83 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFE 83 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHH
Confidence 4899999999999999765433 6666666655332 122 23888899999999998766665
No 283
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=4.1e+02 Score=25.29 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CChhhHHH--hhCCHHHHHHHHHHchhhccCCCCcchh--hhH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHA--HDCCFKEAVQFMEECSSTWSSCSSFMYT--HNW 92 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP------~dawA~Ha--~~Gr~~egi~~le~~~~~w~~~~~~~~~--H~~ 92 (229)
++--+.+-=++.+|.++-|..++++.==-|= ..+++++. ..|+++.++.|..+....-...++.+-. -.-
T Consensus 117 ~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQ 196 (389)
T KOG0396|consen 117 KLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQ 196 (389)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence 4455556667889999999999865422221 23456666 8999999999999986655555543322 232
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH-HHHhhcCCcc--cc-cccHHHHHHHHHh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL-LRVYVRGELD--VF-GNRLKVLADCVAD 164 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL-wRL~l~G~~v--~v-g~rW~~la~~~~~ 164 (229)
-..-|. +.+ .|++|++...+++.|-. ++ ...++-=|+++| ++..-.+... .. .+||+.|++....
T Consensus 197 efIELi--~~~-~~~~Ai~~akk~f~~~~-~~---~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s 265 (389)
T KOG0396|consen 197 EFIELI--KVD-NYDKAIAFAKKHFAPWA-KS---HKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLS 265 (389)
T ss_pred HHHHHH--Hhc-cHHHHHHHHHHHHhhhh-hh---hHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhH
Confidence 334444 454 89999999999999953 32 344444445544 4555554421 11 4899999988776
No 284
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=34.73 E-value=2e+02 Score=29.61 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=71.2
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC----CChhhHHH------hhCC-HHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK----HDCWSQHA------HDCC-FKEAVQFM 73 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP----~dawA~Ha------~~Gr-~~egi~~l 73 (229)
...+..-.|++..-=--|..--.+|+-|+|+.-++++-++.+|++.|=| .|.|..-- +.|. .+.+....
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3344444455554444566677888889999999999999999999854 35555443 5554 67888888
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
|++.+ .|+|-..--++=-.|.+--+-| -...|+.+|++.-.
T Consensus 574 EqaL~---~Cpp~~aKtiyLlYA~lEEe~G-Lar~amsiyerat~ 614 (835)
T KOG2047|consen 574 EQALD---GCPPEHAKTIYLLYAKLEEEHG-LARHAMSIYERATS 614 (835)
T ss_pred HHHHh---cCCHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 99987 5664322223333444433444 77788888877443
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.13 E-value=3.9e+02 Score=24.83 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=66.4
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh-----hCCCC-------hh-----------------hHHH------h
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-----INKHD-------CW-----------------SQHA------H 62 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~-----LnP~d-------aw-----------------A~Ha------~ 62 (229)
+|-.--.+-.++-++..+|++..|.+..+|||= +.|.. .. +++- +
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 455556777888899999999999999999962 22222 11 1111 6
Q ss_pred hCCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+|.+..|.+|..=-.. ++|- .|.+.--++-.+.+..+ +|+--++.++....
T Consensus 116 RG~~rTAlE~~KlLls----Ldp~~DP~g~ll~ID~~ALrs~-~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLS----LDPDEDPLGVLLFIDYYALRSR-QYQWLIDFSESPLA 167 (360)
T ss_pred cCcHHHHHHHHHHHHh----cCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHhHhh
Confidence 8889998888776655 3443 56666666777777776 89888888876544
No 286
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=33.79 E-value=1e+02 Score=22.81 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=31.0
Q ss_pred hHHHHHHHhhCCCCC---CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 026999 5 DLCFDIIHQVLPYNQ---QEDFIFGILAFSLLELGQMSDAEEAAKKGLKI 51 (229)
Q Consensus 5 ~~~~~~~~ralp~~~---~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L 51 (229)
..++..=.++++..+ +-.-++|++.=++++.|+|.+..+.+-+=+++
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555432 33457888888888888888888777766654
No 287
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.70 E-value=56 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
-++|..+=.+.|+|.+.+|.++++|++.++|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e 313 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE 313 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh
Confidence 4677777788999999999999999999999764
No 288
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.23 E-value=72 Score=17.84 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 179 LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 179 ~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
+-++++.|+.+.+.++++.|++.
T Consensus 8 l~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 8 LRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 55788899999999999999874
No 289
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=32.54 E-value=39 Score=24.70 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHhCCHHHHHHHHHHHHhhC
Q 026999 33 LELGQMSDAEEAAKKGLKIN 52 (229)
Q Consensus 33 ~e~g~~d~Ae~~a~rAL~Ln 52 (229)
-..|||++|++.+++|..++
T Consensus 48 ~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 48 YAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred HHCCCHHHHHHHHHHhHHHH
Confidence 44899999999999997654
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.52 E-value=1.8e+02 Score=24.18 Aligned_cols=84 Identities=8% Similarity=-0.040 Sum_probs=54.2
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 96 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA 96 (229)
..|..+-+.-+-|..+...|++++|+...+...+-.|..+.+-.- +++--...+ +| -|-..|
T Consensus 39 LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL--------lA~CL~~~~-----D~-----~Wr~~A 100 (160)
T PF09613_consen 39 LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL--------LALCLYALG-----DP-----SWRRYA 100 (160)
T ss_pred hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH--------HHHHHHHcC-----Ch-----HHHHHH
Confidence 356666666677777999999999999999988888888754321 222222222 11 112245
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.--++.+ .-..++.+.+.....
T Consensus 101 ~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 101 DEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred HHHHhcC-CChHHHHHHHHHHHh
Confidence 5556765 457778887666555
No 291
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=28.32 E-value=1.1e+02 Score=31.34 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=46.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCC-cccccccHHHHHHHHHh---hhhcc-
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE-LDVFGNRLKVLADCVAD---QANWY- 169 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~-~v~vg~rW~~la~~~~~---~~~~~- 169 (229)
|+++.|..+ +|..|..-|.+.+.+..+ ..+.++.|-..+ .+|- +++|.+.=+-+-....+ ..+++
T Consensus 593 WGlA~Lk~e-~~aaAR~KFkqafklkge----dipdvi~diin~-----ieGgpp~dVq~Vrem~dhlak~aptilddSL 662 (1141)
T KOG1811|consen 593 WGLACLKAE-NLAAAREKFKQAFKLKGE----DIPDVIFDIINL-----IEGGPPRDVQDVREMLDHLAKPAPTILDDSL 662 (1141)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHhCCCCC----ccchHHHHHHHh-----hcCCCcchHHHHHHHHHHhccCCcccccccc
Confidence 778888886 999999999998877321 223333343332 2443 33334322222222221 11111
Q ss_pred --ccchhhHHHHHHHhcCCC
Q 026999 170 --LECHLDLLILWALANTGE 187 (229)
Q Consensus 170 --~~~F~d~H~~~al~~ag~ 187 (229)
-..|+.+|..=++.++.+
T Consensus 663 qaD~Y~~~Lh~~eaf~Rser 682 (1141)
T KOG1811|consen 663 QADDYFATLHELEAFLRSER 682 (1141)
T ss_pred cchhHHHHHHhhhhhhhhhh
Confidence 124999999999887754
No 292
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.81 E-value=6.3e+02 Score=25.29 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=85.5
Q ss_pred CCChhHHHHHHHhhCCC---CC-------CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCChhhHHH--------
Q 026999 1 MGRPDLCFDIIHQVLPY---NQ-------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHDCWSQHA-------- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~---~~-------~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-nP~dawA~Ha-------- 61 (229)
+||...++..+..+..- .| ..+..|..+|.=-.-.|.|+.||..+..|+.+ +..|.||.-.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 35666666555544431 22 24566666776667789999999999999976 5567777665
Q ss_pred hhCCHHHHHHHHHHchhh--ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH
Q 026999 62 HDCCFKEAVQFMEECSST--WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 139 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~--w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL 139 (229)
.+|+.+.-...++.--+. -+.++..+..-+..-.|++.+..+ ++.||.....+-+-- +++++.+ .+-++||+
T Consensus 416 ~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn-~lnEaK~~l~e~Lkm----anaed~~-rL~a~~Lv 489 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN-DLNEAKRFLRETLKM----ANAEDLN-RLTACSLV 489 (629)
T ss_pred HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh----cchhhHH-HHHHHHHH
Confidence 678877777777766541 111111222335556899999987 999999888665543 3333333 34567765
Q ss_pred H
Q 026999 140 L 140 (229)
Q Consensus 140 w 140 (229)
.
T Consensus 490 L 490 (629)
T KOG2300|consen 490 L 490 (629)
T ss_pred H
Confidence 4
No 293
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=27.35 E-value=1.5e+02 Score=31.32 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+|+.+.+....+..-...+.|--.+..+-+++.+.|++|+|-...++|+.-+|+--.-.|-
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~l 116 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHL 116 (932)
T ss_pred hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHH
Confidence 4666777744444444566788889999999999999999999999999999996555554
No 294
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=26.71 E-value=1.6e+02 Score=20.11 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=11.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGL 49 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL 49 (229)
.|.-..+.|+|++|.....+|+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555666666555555444
No 295
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=26.44 E-value=1.4e+02 Score=20.76 Aligned_cols=12 Identities=50% Similarity=0.526 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 026999 39 SDAEEAAKKGLK 50 (229)
Q Consensus 39 d~Ae~~a~rAL~ 50 (229)
++|.....+|++
T Consensus 6 ~~A~~li~~Av~ 17 (77)
T smart00745 6 SKAKELISKALK 17 (77)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.43 E-value=5.9e+02 Score=24.47 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=80.2
Q ss_pred CChhHHHHHHH--hhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhh
Q 026999 2 GRPDLCFDIIH--QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSST 79 (229)
Q Consensus 2 G~~~~~~~~~~--ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~ 79 (229)
||.+.+...++ +.+|.-| ..+...+.+| |+..|..+.|.+.. -+|+----+.-..|+.+.|.+...+-.
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~f-L~~~G~~e~AL~~~-----~D~~~rFeLAl~lg~L~~A~~~a~~~~-- 345 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIP-KDQGQSIARF-LEKKGYPELALQFV-----TDPDHRFELALQLGNLDIALEIAKELD-- 345 (443)
T ss_dssp T-HHH-----HHHHTGGG---HHHHHHHHHH-HHHTT-HHHHHHHS-----S-HHHHHHHHHHCT-HHHHHHHCCCCS--
T ss_pred CChhhhhhhhhhhhhcccCC-hhHHHHHHHH-HHHCCCHHHHHhhc-----CChHHHhHHHHhcCCHHHHHHHHHhcC--
Confidence 44444444444 6677666 2334444444 66778877776652 122211111117889998887654332
Q ss_pred ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHH
Q 026999 80 WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLA 159 (229)
Q Consensus 80 w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la 159 (229)
..+.|=.+|-..|..| +++-|.+.|.+ +. |-.+|++=.-..|- .+..+.++
T Consensus 346 --------~~~~W~~Lg~~AL~~g-~~~lAe~c~~k--------~~--------d~~~L~lLy~~~g~----~~~L~kl~ 396 (443)
T PF04053_consen 346 --------DPEKWKQLGDEALRQG-NIELAEECYQK--------AK--------DFSGLLLLYSSTGD----REKLSKLA 396 (443)
T ss_dssp --------THHHHHHHHHHHHHTT-BHHHHHHHHHH--------CT---------HHHHHHHHHHCT-----HHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHcC-CHHHHHHHHHh--------hc--------CccccHHHHHHhCC----HHHHHHHH
Confidence 2347778999999997 99999988844 21 44455544555554 35677888
Q ss_pred HHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 160 DCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 160 ~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
.....+.+. ...|.- +.-.|+.+..-.+|..-.+
T Consensus 397 ~~a~~~~~~-n~af~~------~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 397 KIAEERGDI-NIAFQA------ALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHTT-H-HHHHHH------HHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHccCH-HHHHHH------HHHcCCHHHHHHHHHHcCC
Confidence 777654433 324432 2345776655555554433
No 297
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=26.36 E-value=2.7e+02 Score=21.26 Aligned_cols=82 Identities=6% Similarity=0.068 Sum_probs=48.7
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCC
Q 026999 33 LELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 33 ~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg 104 (229)
+..|........-+..+.-+|.++ .+|+ -+-+..+.++++++....++... ..-..+..|.-+.+.+...|
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~-~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENP-ALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccch-hHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 456778888888888888887555 4666 34467788899885322111100 01123345666666666555
Q ss_pred CHHHHHHHHHh
Q 026999 105 PMRKVLEIYDN 115 (229)
Q Consensus 105 ~~d~Al~~yd~ 115 (229)
++++|++++=.
T Consensus 97 ~~~~Al~~~l~ 107 (140)
T smart00299 97 NFKDAIVTLIE 107 (140)
T ss_pred CHHHHHHHHHH
Confidence 77777766633
No 298
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=2.1e+02 Score=27.05 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=52.0
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA----------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+....+|..|+...-++|+-+-.|+..-.. +.|++..+|.-..++.. .+|- +.--+|--|.++++
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~----~~P~-h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK----LKPT-HLKAYIRGAKCLLE 165 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----cCcc-hhhhhhhhhHHHHH
Confidence 344567777777777777777766644333 56666666666666655 3321 12256677777777
Q ss_pred CCCCHHHHHHHHHhhchh
Q 026999 102 GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 102 ~gg~~d~Al~~yd~~i~~ 119 (229)
+. ++++|+.+++..+..
T Consensus 166 Le-~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 166 LE-RFAEAVNWCEEGLQI 182 (390)
T ss_pred HH-HHHHHHHHHhhhhhh
Confidence 76 777777777777544
No 299
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.78 E-value=45 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.082 Sum_probs=9.9
Q ss_pred hhHHHHHHHHhhc
Q 026999 133 LNALGLLLRVYVR 145 (229)
Q Consensus 133 ~Da~sLLwRL~l~ 145 (229)
-.--.|||||+.+
T Consensus 7 eelkqll~rle~e 19 (46)
T PF08181_consen 7 EELKQLLWRLENE 19 (46)
T ss_pred HHHHHHHHHHHHH
Confidence 3445799999986
No 300
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.54 E-value=1.2e+02 Score=28.96 Aligned_cols=97 Identities=15% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCCchhHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCCh---hhHHH------------------hhCCHHHHHHHHH
Q 026999 18 NQQEDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDC---WSQHA------------------HDCCFKEAVQFME 74 (229)
Q Consensus 18 ~~~~~~~~g~~AF--~L~e~g~~d~Ae~~a~rAL~LnP~da---wA~Ha------------------~~Gr~~egi~~le 74 (229)
+|+-|-.++++-+ .|.+..+..+-.++-++. .+|.+. ++-+. ..|++..|+..|+
T Consensus 69 ~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~--~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~ 146 (404)
T PF10255_consen 69 NPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRG--EDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLE 146 (404)
T ss_pred ccCcccHHHHHHHHHHHHHHHhHHHHHHHhhcc--CCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhh
Confidence 3555656666655 556666666644444443 222221 11111 5899999999988
Q ss_pred Hchhhcc-CCCCcchhh--hHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSSTWS-SCSSFMYTH--NWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~~w~-~~~~~~~~H--~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.-.-+=. -.+....+| .+-|.|-+|+.++ +|.+|+++|...+
T Consensus 147 ~idl~~~~l~~~V~~~~is~~YyvGFaylMlr-RY~DAir~f~~iL 191 (404)
T PF10255_consen 147 NIDLNKKGLYTKVPACHISTYYYVGFAYLMLR-RYADAIRTFSQIL 191 (404)
T ss_pred ccCcccchhhccCcchheehHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7632100 001113455 5679999999997 9999999996544
No 301
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=23.36 E-value=1.4e+02 Score=16.85 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHH
Q 026999 177 LILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 177 H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
.++++|..-|+......|++.++
T Consensus 4 ~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 4 AAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHGGG-SHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Confidence 45789999999999999988876
No 302
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=22.24 E-value=2.2e+02 Score=29.48 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=50.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhhcc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSSTWS 81 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~w~ 81 (229)
|+.+++...+++.=..-|+ ++--+|==|.|+.++++|.++..|| ||.+||...+++-...--
T Consensus 787 ~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkA---------------Gr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKA---------------GRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHh---------------cchHHHHHHHHHhhhhhh
Confidence 4455566665554333232 2223333477888888888777665 999999999998754222
Q ss_pred CCCCc-chhhhHHHHHHHHHh
Q 026999 82 SCSSF-MYTHNWWHVALCYLE 101 (229)
Q Consensus 82 ~~~~~-~~~H~~WHlAL~~l~ 101 (229)
..+-| ..+.++|-++--+|.
T Consensus 849 ~E~Rf~DA~y~yw~L~~q~Ld 869 (1081)
T KOG1538|consen 849 AESRFNDAAYYYWMLSMQCLD 869 (1081)
T ss_pred hhhhhccchhHHHHhhhhhhh
Confidence 22222 235578888777666
No 303
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=2e+02 Score=26.28 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=40.8
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
|+.-..++-+..+|.++|.+--+++-.|=+....=..++|++=..++|+++|--+-++-
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 45556667777777777777777777777776666777777777777777776554443
No 304
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.65 E-value=6.3e+02 Score=26.77 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=67.4
Q ss_pred HHHHHHhhCCCChhhHHH--------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 44 AAKKGLKINKHDCWSQHA--------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 44 ~a~rAL~LnP~dawA~Ha--------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
.+-+.++.+++.+-.+-. ++=|...++.|=.-..+.|...+.- + ... .++..+.+.+
T Consensus 27 r~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-~-----------~~i---~~~~~e~iks 91 (960)
T KOG1992|consen 27 RALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-P-----------IKI---IEEDREQIKS 91 (960)
T ss_pred HHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-c-----------ccc---chhHHHHHHH
Confidence 345677888888776665 4455777777666667788875432 2 122 2555677777
Q ss_pred hchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhcc
Q 026999 116 HIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWY 169 (229)
Q Consensus 116 ~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~ 169 (229)
.|-.-..++....-..+.||.|+. |.- |++++|..|.+....+....
T Consensus 92 lIv~lMl~s~~~iQ~qlseal~~I------g~~-DFP~kWptLl~dL~~~ls~~ 138 (960)
T KOG1992|consen 92 LIVTLMLSSPFNIQKQLSEALSLI------GKR-DFPDKWPTLLPDLVARLSSG 138 (960)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHH------hcc-ccchhhHHHHHHHHhhcccc
Confidence 777766544322334457887764 443 58999999999998876643
No 305
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=21.28 E-value=1.1e+02 Score=26.90 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=16.5
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCh
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
..++...|....+||++|||+-.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 34566778888888888887753
No 306
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=3.2e+02 Score=25.86 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=44.6
Q ss_pred hHHHHHHHhhCCC---CCC-chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPY---NQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 5 ~~~~~~~~ralp~---~~~-~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
..+..+-...+-. +|+ +.-.+...|-+..+-|.|..|..=+.+|+.++|...=|.-- ...++++++.|.+
T Consensus 98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3444444444443 222 34566666667777777777777777777777776544433 5666777777766
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
+-..
T Consensus 178 e~~~ 181 (390)
T KOG0551|consen 178 EGLQ 181 (390)
T ss_pred hhhh
Confidence 6544
No 307
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.04 E-value=1.2e+02 Score=18.57 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q 026999 37 QMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~d 55 (229)
++|+|....+|.+...|+-
T Consensus 2 E~dRAR~IyeR~v~~hp~~ 20 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV 20 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc
Confidence 5789999999999888764
No 308
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.62 E-value=7e+02 Score=28.17 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=21.8
Q ss_pred hCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|+.+.|...+++....++. +.-+|--+...-+..| +.+-+..+|++.|..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~-~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHG-DIKYVRDLFERVIEL 1663 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccC-CHHHHHHHHHHHHhc
Confidence 44555555555554443222 2223333333333343 444555555444443
No 309
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=20.26 E-value=2e+02 Score=28.53 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=19.1
Q ss_pred hhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCh
Q 026999 13 QVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 13 ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~da 56 (229)
+++..+|+++-+--+-|+=.-|-| ..+.|.....|+|..||+.+
T Consensus 130 ~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 130 AMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred HHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 333334444433333333333333 24445555555555555544
No 310
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=20.11 E-value=2e+02 Score=27.66 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hhCCHHHHHHHHHHchh--------hcc
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HDCCFKEAVQFMEECSS--------TWS 81 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~Gr~~egi~~le~~~~--------~w~ 81 (229)
.++++.++-++.-.+.++++.+..+.|+.+..++..++-. ...+.++++-|..++.+ +|.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 3888899999989999999999999999988777666544 45677888888888733 333
Q ss_pred CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 82 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 82 ~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. -.+.-...|+|..+-.+| +.-.|.+..++...-
T Consensus 202 ~---kyr~~~lyhmaValR~~G-~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 202 L---KYRAMSLYHMAVALRLLG-RLGDAMECCEEAMKL 235 (518)
T ss_pred H---HHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHH
Confidence 3 123336678888877776 888888888765544
No 311
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=20.01 E-value=2.1e+02 Score=19.16 Aligned_cols=46 Identities=20% Similarity=0.026 Sum_probs=28.3
Q ss_pred hHHHHHHHhhCCCCCC---chhHHHH-HHHHHHHhCCHHHHHHHHHHHHh
Q 026999 5 DLCFDIIHQVLPYNQQ---EDFIFGI-LAFSLLELGQMSDAEEAAKKGLK 50 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~---~~~~~g~-~AF~L~e~g~~d~Ae~~a~rAL~ 50 (229)
...|..|...+|.-+. .|.-..- -..-+...|+.++|++..+++|+
T Consensus 11 ~~~R~~Vk~~l~~~~~RR~FWe~~~~g~~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 11 GRFRERVKQRLPDFAERRRFWERFFDGPFAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHcCHHHHHHHCCCHHHHHHHHHHhhC
Confidence 3567788888886332 2221111 12367789999999999999874
Done!