Query 026999
Match_columns 229
No_of_seqs 157 out of 231
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.3 9.5E-11 3.2E-15 96.8 15.7 113 1-119 18-147 (217)
2 3gyz_A Chaperone protein IPGC; 99.2 5.5E-11 1.9E-15 95.0 10.7 103 11-119 25-133 (151)
3 2pl2_A Hypothetical conserved 99.2 1.4E-10 4.7E-15 95.8 12.0 112 1-119 52-180 (217)
4 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.7E-15 91.6 7.9 112 2-119 11-129 (150)
5 2vgx_A Chaperone SYCD; alterna 99.1 3.1E-10 1.1E-14 89.0 10.3 105 9-119 8-118 (148)
6 4gyw_A UDP-N-acetylglucosamine 99.1 1.2E-09 4.2E-14 107.5 14.9 113 1-119 22-140 (723)
7 2xcb_A PCRH, regulatory protei 99.1 1.5E-09 5E-14 83.5 11.9 104 10-119 6-115 (142)
8 4gco_A Protein STI-1; structur 99.1 1.5E-09 5.3E-14 82.9 11.5 103 11-119 2-110 (126)
9 2vq2_A PILW, putative fimbrial 99.1 4.4E-08 1.5E-12 77.7 20.2 180 1-201 21-211 (225)
10 2h6f_A Protein farnesyltransfe 99.1 3.6E-10 1.2E-14 103.1 8.8 113 1-119 110-229 (382)
11 3vtx_A MAMA; tetratricopeptide 99.0 3.5E-09 1.2E-13 83.4 12.6 112 2-119 19-136 (184)
12 3vtx_A MAMA; tetratricopeptide 99.0 9.1E-09 3.1E-13 81.0 14.7 113 1-119 52-170 (184)
13 2h6f_A Protein farnesyltransfe 99.0 8.3E-09 2.8E-13 94.0 16.3 114 1-119 144-269 (382)
14 2ho1_A Type 4 fimbrial biogene 99.0 5.8E-08 2E-12 79.3 19.6 182 1-202 50-239 (252)
15 2fo7_A Synthetic consensus TPR 99.0 9.9E-09 3.4E-13 74.3 12.4 112 2-119 15-132 (136)
16 3as5_A MAMA; tetratricopeptide 99.0 9.8E-09 3.4E-13 78.7 12.6 112 2-119 22-139 (186)
17 3qky_A Outer membrane assembly 99.0 2.3E-08 8E-13 83.4 15.7 116 1-119 28-177 (261)
18 3hym_B Cell division cycle pro 98.9 1.1E-07 3.6E-12 79.9 19.0 112 2-119 70-188 (330)
19 4i17_A Hypothetical protein; T 98.9 8.4E-09 2.9E-13 84.1 11.7 117 1-119 20-146 (228)
20 1w3b_A UDP-N-acetylglucosamine 98.9 7.2E-08 2.5E-12 84.3 18.4 111 2-118 149-265 (388)
21 3urz_A Uncharacterized protein 98.9 5.3E-09 1.8E-13 85.6 10.4 117 1-119 17-186 (208)
22 2e2e_A Formate-dependent nitri 98.9 1E-08 3.5E-13 80.5 11.7 112 2-119 24-144 (177)
23 4gyw_A UDP-N-acetylglucosamine 98.9 4.1E-09 1.4E-13 103.7 11.1 113 1-119 56-174 (723)
24 3as5_A MAMA; tetratricopeptide 98.9 2.5E-08 8.6E-13 76.4 13.3 112 2-119 56-173 (186)
25 3hym_B Cell division cycle pro 98.9 1.8E-07 6.3E-12 78.4 19.8 113 1-119 103-222 (330)
26 1w3b_A UDP-N-acetylglucosamine 98.9 8.7E-08 3E-12 83.8 18.3 76 2-77 47-128 (388)
27 2q7f_A YRRB protein; TPR, prot 98.9 7.1E-08 2.4E-12 77.8 16.3 180 1-201 36-222 (243)
28 1fch_A Peroxisomal targeting s 98.9 1.9E-07 6.4E-12 80.1 19.8 186 1-202 77-315 (368)
29 1a17_A Serine/threonine protei 98.9 1.5E-08 5E-13 77.3 11.0 114 1-118 26-145 (166)
30 4eqf_A PEX5-related protein; a 98.9 1E-07 3.5E-12 82.4 17.2 77 2-78 79-161 (365)
31 3ieg_A DNAJ homolog subfamily 98.9 1E-06 3.5E-11 74.3 23.0 185 1-200 133-334 (359)
32 3ieg_A DNAJ homolog subfamily 98.9 3E-07 1E-11 77.6 19.5 180 1-201 16-217 (359)
33 4eqf_A PEX5-related protein; a 98.9 1.1E-08 3.7E-13 88.6 10.3 114 1-120 190-311 (365)
34 4i17_A Hypothetical protein; T 98.9 3.2E-08 1.1E-12 80.6 12.6 114 1-119 55-209 (228)
35 3u4t_A TPR repeat-containing p 98.8 7.7E-07 2.6E-11 73.2 20.7 187 1-201 50-250 (272)
36 2ho1_A Type 4 fimbrial biogene 98.8 7.4E-08 2.5E-12 78.7 14.3 111 2-118 85-203 (252)
37 3upv_A Heat shock protein STI1 98.8 3.2E-08 1.1E-12 73.5 11.0 94 20-119 2-101 (126)
38 2q7f_A YRRB protein; TPR, prot 98.8 2.9E-08 9.9E-13 80.1 11.6 113 1-119 70-188 (243)
39 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.9E-08 2.4E-12 77.2 13.7 114 1-119 19-150 (213)
40 2vsy_A XCC0866; transferase, g 98.8 4.1E-08 1.4E-12 91.7 13.8 112 2-119 3-120 (568)
41 3sz7_A HSC70 cochaperone (SGT) 98.8 4.1E-08 1.4E-12 76.6 11.6 97 18-120 7-109 (164)
42 3uq3_A Heat shock protein STI1 98.8 4.1E-08 1.4E-12 79.5 11.9 110 4-119 121-236 (258)
43 3cv0_A Peroxisome targeting si 98.8 3.1E-08 1.1E-12 83.1 11.3 112 2-119 152-269 (327)
44 3fp2_A TPR repeat-containing p 98.8 3.1E-07 1.1E-11 82.9 18.5 197 1-204 289-494 (537)
45 1xnf_A Lipoprotein NLPI; TPR, 98.8 2.6E-08 8.9E-13 81.9 10.2 112 2-119 19-140 (275)
46 1xnf_A Lipoprotein NLPI; TPR, 98.8 1.2E-07 4E-12 77.9 14.2 77 2-78 57-139 (275)
47 2y4t_A DNAJ homolog subfamily 98.8 6.4E-07 2.2E-11 79.1 20.0 182 1-201 39-240 (450)
48 2pzi_A Probable serine/threoni 98.8 8.8E-09 3E-13 99.7 8.4 112 1-119 446-563 (681)
49 3gyz_A Chaperone protein IPGC; 98.8 2E-08 6.7E-13 80.0 8.9 78 1-78 49-132 (151)
50 4abn_A Tetratricopeptide repea 98.8 8.3E-07 2.8E-11 82.0 21.0 181 5-200 85-286 (474)
51 2vsy_A XCC0866; transferase, g 98.8 6E-08 2.1E-12 90.5 13.4 114 1-120 36-158 (568)
52 1fch_A Peroxisomal targeting s 98.8 3.5E-08 1.2E-12 84.8 10.7 112 2-119 195-314 (368)
53 3edt_B KLC 2, kinesin light ch 98.8 7.3E-08 2.5E-12 78.7 11.9 117 1-119 56-198 (283)
54 2vq2_A PILW, putative fimbrial 98.7 6.9E-08 2.4E-12 76.6 10.9 113 1-119 55-176 (225)
55 3q49_B STIP1 homology and U bo 98.7 1.3E-07 4.4E-12 70.4 11.7 96 18-119 5-106 (137)
56 2r5s_A Uncharacterized protein 98.7 5.3E-08 1.8E-12 77.1 9.9 112 1-119 19-137 (176)
57 4abn_A Tetratricopeptide repea 98.7 7.3E-08 2.5E-12 89.1 12.3 111 2-119 116-250 (474)
58 2r5s_A Uncharacterized protein 98.7 5.9E-08 2E-12 76.8 10.1 112 1-118 53-172 (176)
59 1hxi_A PEX5, peroxisome target 98.7 2.6E-08 9E-13 75.3 7.6 89 25-119 20-114 (121)
60 2xpi_A Anaphase-promoting comp 98.7 5.6E-07 1.9E-11 82.6 18.0 112 2-119 353-470 (597)
61 2pzi_A Probable serine/threoni 98.7 1.5E-07 5.2E-12 91.0 14.9 112 1-119 404-529 (681)
62 3cv0_A Peroxisome targeting si 98.7 7E-08 2.4E-12 80.9 10.9 118 1-119 185-315 (327)
63 2xpi_A Anaphase-promoting comp 98.7 7.3E-07 2.5E-11 81.8 18.6 185 1-201 386-579 (597)
64 2kck_A TPR repeat; tetratricop 98.7 1.1E-07 3.8E-12 67.3 10.4 97 18-119 2-106 (112)
65 4gcn_A Protein STI-1; structur 98.7 9.5E-08 3.2E-12 72.6 10.6 99 20-119 6-112 (127)
66 4gco_A Protein STI-1; structur 98.7 4.6E-08 1.6E-12 74.5 8.7 78 1-78 26-109 (126)
67 2vyi_A SGTA protein; chaperone 98.7 7.4E-08 2.5E-12 69.7 9.3 97 18-120 8-110 (131)
68 1hxi_A PEX5, peroxisome target 98.7 5.5E-08 1.9E-12 73.5 8.9 78 1-78 30-113 (121)
69 2gw1_A Mitochondrial precursor 98.7 1.1E-06 3.8E-11 78.4 18.3 189 1-201 283-478 (514)
70 2lni_A Stress-induced-phosphop 98.7 2.1E-07 7.3E-12 67.9 11.4 97 17-119 11-113 (133)
71 3u4t_A TPR repeat-containing p 98.7 1.6E-07 5.3E-12 77.4 11.8 112 1-119 16-137 (272)
72 3qky_A Outer membrane assembly 98.7 1.6E-07 5.6E-12 78.2 12.1 116 1-119 65-224 (261)
73 3gw4_A Uncharacterized protein 98.7 1.5E-07 5.3E-12 74.1 11.2 119 1-120 39-177 (203)
74 1hz4_A MALT regulatory protein 98.7 8.1E-07 2.8E-11 77.3 16.8 118 1-119 27-164 (373)
75 3qou_A Protein YBBN; thioredox 98.7 4.1E-08 1.4E-12 84.6 8.1 112 2-119 131-248 (287)
76 3mkr_A Coatomer subunit epsilo 98.7 3.6E-07 1.2E-11 79.1 14.2 108 1-119 114-229 (291)
77 3uq3_A Heat shock protein STI1 98.7 1.9E-07 6.5E-12 75.5 11.3 113 1-119 51-202 (258)
78 3k9i_A BH0479 protein; putativ 98.7 3.7E-08 1.3E-12 73.1 6.3 82 1-82 3-93 (117)
79 2xcb_A PCRH, regulatory protei 98.7 1E-07 3.6E-12 72.9 8.9 81 1-81 31-117 (142)
80 2vyi_A SGTA protein; chaperone 98.6 2.6E-07 8.7E-12 66.8 10.5 100 1-106 25-130 (131)
81 2lni_A Stress-induced-phosphop 98.6 2.2E-07 7.5E-12 67.9 10.2 98 1-103 29-132 (133)
82 2vgx_A Chaperone SYCD; alterna 98.6 1.3E-07 4.6E-12 73.8 8.9 82 1-82 34-121 (148)
83 2y4t_A DNAJ homolog subfamily 98.6 2.3E-06 8E-11 75.5 18.0 184 2-200 157-357 (450)
84 2xev_A YBGF; tetratricopeptide 98.6 1.1E-06 3.7E-11 64.6 13.2 93 24-119 4-105 (129)
85 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.9E-11 62.2 13.5 92 22-119 9-106 (125)
86 4ga2_A E3 SUMO-protein ligase 98.6 1.6E-07 5.5E-12 73.2 9.0 78 1-78 44-128 (150)
87 3edt_B KLC 2, kinesin light ch 98.6 1.3E-07 4.3E-12 77.3 8.6 117 1-119 98-281 (283)
88 3upv_A Heat shock protein STI1 98.6 2E-07 6.8E-12 69.2 9.0 78 1-78 17-100 (126)
89 1elr_A TPR2A-domain of HOP; HO 98.6 6.1E-07 2.1E-11 64.9 11.2 98 21-119 3-108 (131)
90 1p5q_A FKBP52, FK506-binding p 98.6 2.3E-07 7.9E-12 82.0 10.6 113 1-119 160-294 (336)
91 3nf1_A KLC 1, kinesin light ch 98.6 2.4E-06 8.3E-11 70.9 16.2 118 1-119 40-182 (311)
92 3qou_A Protein YBBN; thioredox 98.6 2E-07 6.8E-12 80.2 9.8 115 1-119 164-284 (287)
93 1elw_A TPR1-domain of HOP; HOP 98.6 7.9E-07 2.7E-11 63.1 11.4 92 22-119 4-101 (118)
94 1wao_1 Serine/threonine protei 98.6 7.4E-08 2.5E-12 89.7 6.8 108 1-114 19-134 (477)
95 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.8E-07 2.3E-11 73.5 11.9 116 2-119 18-176 (225)
96 2ond_A Cleavage stimulation fa 98.6 9.9E-07 3.4E-11 75.9 13.4 107 5-119 81-198 (308)
97 2dba_A Smooth muscle cell asso 98.6 5.1E-07 1.8E-11 67.3 10.1 97 17-119 23-128 (148)
98 3sz7_A HSC70 cochaperone (SGT) 98.5 3.9E-07 1.3E-11 70.9 9.5 82 1-82 24-111 (164)
99 3ro3_A PINS homolog, G-protein 98.5 3E-07 1E-11 68.4 8.2 118 1-119 22-158 (164)
100 2ond_A Cleavage stimulation fa 98.5 8.1E-07 2.8E-11 76.5 12.0 113 1-119 112-232 (308)
101 2hr2_A Hypothetical protein; a 98.5 6E-07 2.1E-11 73.2 10.4 98 21-120 10-132 (159)
102 4a1s_A PINS, partner of inscut 98.5 3E-06 1E-10 74.0 15.7 199 1-203 61-294 (411)
103 2gw1_A Mitochondrial precursor 98.5 7.9E-07 2.7E-11 79.4 12.2 118 1-119 317-444 (514)
104 1na0_A Designed protein CTPR3; 98.5 9.3E-07 3.2E-11 63.2 10.3 96 1-101 22-123 (125)
105 2c2l_A CHIP, carboxy terminus 98.5 1.1E-06 3.8E-11 75.4 12.3 95 19-119 1-101 (281)
106 1p5q_A FKBP52, FK506-binding p 98.5 1.6E-07 5.6E-12 82.9 7.0 101 13-119 138-259 (336)
107 2yhc_A BAMD, UPF0169 lipoprote 98.5 9.9E-07 3.4E-11 72.5 11.1 116 1-119 54-213 (225)
108 3gw4_A Uncharacterized protein 98.5 8E-07 2.7E-11 69.9 10.0 117 2-119 6-136 (203)
109 1qqe_A Vesicular transport pro 98.5 6.3E-07 2.2E-11 76.9 10.1 117 2-119 51-187 (292)
110 3q49_B STIP1 homology and U bo 98.5 6.7E-07 2.3E-11 66.4 9.0 82 1-82 22-109 (137)
111 1a17_A Serine/threonine protei 98.5 1.7E-06 5.9E-11 65.6 11.4 93 21-119 12-110 (166)
112 2kck_A TPR repeat; tetratricop 98.5 9.3E-07 3.2E-11 62.3 9.3 81 1-81 19-108 (112)
113 1ouv_A Conserved hypothetical 98.5 2.7E-05 9.3E-10 64.7 19.8 107 1-119 19-143 (273)
114 3ulq_A Response regulator aspa 98.5 3.2E-06 1.1E-10 74.3 14.4 193 1-201 156-368 (383)
115 3ro2_A PINS homolog, G-protein 98.5 5.3E-06 1.8E-10 68.7 15.0 118 1-119 18-172 (338)
116 1hz4_A MALT regulatory protein 98.5 1.3E-05 4.5E-10 69.6 18.1 118 1-119 106-244 (373)
117 3fp2_A TPR repeat-containing p 98.5 1.6E-06 5.4E-11 78.2 12.4 118 1-119 323-457 (537)
118 3nf1_A KLC 1, kinesin light ch 98.4 4E-07 1.4E-11 75.7 7.4 117 1-119 124-307 (311)
119 1elw_A TPR1-domain of HOP; HOP 98.4 3E-06 1E-10 60.0 10.9 78 1-78 17-100 (118)
120 2fo7_A Synthetic consensus TPR 98.4 3.8E-06 1.3E-10 60.3 11.1 90 24-119 3-98 (136)
121 4a1s_A PINS, partner of inscut 98.4 7.1E-06 2.4E-10 71.6 14.6 199 1-203 99-334 (411)
122 1ouv_A Conserved hypothetical 98.4 5.9E-05 2E-09 62.7 19.6 171 1-197 55-247 (273)
123 2kat_A Uncharacterized protein 98.4 2E-06 6.7E-11 62.9 8.7 73 6-78 3-81 (115)
124 2fbn_A 70 kDa peptidylprolyl i 98.4 1.7E-06 5.9E-11 69.3 9.0 109 1-115 51-182 (198)
125 2fbn_A 70 kDa peptidylprolyl i 98.3 4.2E-07 1.4E-11 72.9 5.3 93 21-119 37-151 (198)
126 3urz_A Uncharacterized protein 98.3 1.5E-05 5E-10 64.9 14.6 91 23-119 5-117 (208)
127 3sf4_A G-protein-signaling mod 98.3 1.7E-05 5.7E-10 68.3 15.7 118 1-119 22-176 (406)
128 2xev_A YBGF; tetratricopeptide 98.3 2.7E-06 9.1E-11 62.4 9.1 82 1-82 15-108 (129)
129 1qqe_A Vesicular transport pro 98.3 1.8E-06 6.1E-11 74.0 9.1 89 29-118 44-146 (292)
130 2dba_A Smooth muscle cell asso 98.3 6.8E-06 2.3E-10 61.0 11.1 78 1-78 41-127 (148)
131 3rkv_A Putative peptidylprolyl 98.3 1.3E-06 4.4E-11 67.8 7.3 78 1-78 24-125 (162)
132 4gcn_A Protein STI-1; structur 98.3 1.2E-06 4.1E-11 66.4 7.0 78 1-78 21-111 (127)
133 3mkr_A Coatomer subunit epsilo 98.3 9.3E-06 3.2E-10 70.2 13.5 113 1-119 143-264 (291)
134 2c2l_A CHIP, carboxy terminus 98.3 1.4E-06 4.9E-11 74.7 8.2 81 1-81 17-103 (281)
135 2ooe_A Cleavage stimulation fa 98.3 7.6E-05 2.6E-09 68.7 20.3 179 6-202 304-493 (530)
136 2l6j_A TPR repeat-containing p 98.3 3.1E-07 1.1E-11 65.6 3.3 94 21-115 3-103 (111)
137 3sf4_A G-protein-signaling mod 98.3 1.1E-05 3.9E-10 69.4 13.8 194 1-204 100-339 (406)
138 4g1t_A Interferon-induced prot 98.3 2.9E-06 9.9E-11 75.7 10.2 112 2-119 227-363 (472)
139 4g1t_A Interferon-induced prot 98.3 3.4E-06 1.2E-10 75.2 10.4 112 2-119 152-276 (472)
140 3ulq_A Response regulator aspa 98.3 3.2E-06 1.1E-10 74.2 10.0 118 1-119 116-253 (383)
141 3k9i_A BH0479 protein; putativ 98.3 6.4E-07 2.2E-11 66.2 4.7 81 34-120 2-91 (117)
142 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.4E-06 1.2E-10 77.7 10.4 113 1-119 281-415 (457)
143 2hr2_A Hypothetical protein; a 98.3 2E-06 6.8E-11 70.1 7.7 78 1-78 24-130 (159)
144 3ro2_A PINS homolog, G-protein 98.3 1.1E-05 3.9E-10 66.7 12.4 198 1-202 56-293 (338)
145 2ooe_A Cleavage stimulation fa 98.3 4.8E-05 1.6E-09 70.1 17.8 178 6-201 256-454 (530)
146 4f3v_A ESX-1 secretion system 98.3 2.9E-06 1E-10 75.0 9.1 115 1-119 115-237 (282)
147 3q15_A PSP28, response regulat 98.2 3.2E-05 1.1E-09 67.9 15.3 118 1-120 154-291 (378)
148 3ma5_A Tetratricopeptide repea 98.2 4E-06 1.4E-10 60.7 7.9 61 18-78 3-69 (100)
149 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 7.6E-07 2.6E-11 82.1 3.9 96 18-119 264-380 (457)
150 3rkv_A Putative peptidylprolyl 98.2 9.6E-06 3.3E-10 62.8 9.6 92 22-119 11-126 (162)
151 1zu2_A Mitochondrial import re 98.1 1.4E-06 4.6E-11 71.0 4.2 83 32-119 12-120 (158)
152 2ifu_A Gamma-SNAP; membrane fu 98.1 5.2E-06 1.8E-10 71.6 8.1 115 1-117 89-222 (307)
153 2l6j_A TPR repeat-containing p 98.1 6.5E-07 2.2E-11 63.9 1.9 55 1-55 17-71 (111)
154 1ihg_A Cyclophilin 40; ppiase 98.1 5.9E-06 2E-10 74.4 8.5 105 1-111 236-362 (370)
155 2qfc_A PLCR protein; TPR, HTH, 98.1 3.9E-05 1.3E-09 65.2 13.1 117 2-119 129-266 (293)
156 3rjv_A Putative SEL1 repeat pr 98.1 0.00042 1.4E-08 56.5 18.9 140 7-167 5-157 (212)
157 2if4_A ATFKBP42; FKBP-like, al 98.1 4.3E-06 1.5E-10 73.9 7.0 114 1-119 192-328 (338)
158 2qfc_A PLCR protein; TPR, HTH, 98.1 3.6E-05 1.2E-09 65.4 12.6 118 1-119 88-225 (293)
159 1elr_A TPR2A-domain of HOP; HO 98.1 8.1E-06 2.8E-10 58.8 7.2 78 1-78 17-107 (131)
160 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6E-10 58.6 8.8 98 21-119 8-118 (164)
161 1zu2_A Mitochondrial import re 98.1 2.1E-06 7.3E-11 69.9 3.9 77 2-78 16-119 (158)
162 1na3_A Designed protein CTPR2; 98.1 2.4E-05 8E-10 53.7 8.6 59 20-78 7-71 (91)
163 2kat_A Uncharacterized protein 98.0 9.3E-06 3.2E-10 59.2 6.6 75 39-119 2-82 (115)
164 2kc7_A BFR218_protein; tetratr 98.0 1.1E-05 3.7E-10 57.0 6.6 79 28-120 6-91 (99)
165 3u3w_A Transcriptional activat 98.0 2.5E-05 8.6E-10 66.4 10.0 118 2-119 129-266 (293)
166 1hh8_A P67PHOX, NCF-2, neutrop 98.0 2.3E-05 7.9E-10 62.3 9.2 78 1-78 50-149 (213)
167 4f3v_A ESX-1 secretion system 98.0 3.9E-05 1.3E-09 67.7 11.5 179 2-201 20-237 (282)
168 2e2e_A Formate-dependent nitri 98.0 1.7E-05 5.9E-10 61.8 8.3 82 1-82 57-147 (177)
169 3dra_A Protein farnesyltransfe 98.0 0.00012 4.1E-09 64.9 14.5 110 4-119 49-175 (306)
170 3ly7_A Transcriptional activat 98.0 1.5E-05 5.3E-10 73.0 8.8 108 4-119 215-339 (372)
171 3ly7_A Transcriptional activat 97.9 3.1E-05 1.1E-09 70.9 9.6 80 13-98 268-353 (372)
172 1na3_A Designed protein CTPR2; 97.9 2.7E-05 9.2E-10 53.4 6.9 61 1-61 22-82 (91)
173 2ifu_A Gamma-SNAP; membrane fu 97.9 2.7E-05 9.3E-10 67.0 7.9 119 1-120 49-185 (307)
174 3u3w_A Transcriptional activat 97.9 0.00024 8.2E-09 60.3 13.6 118 2-120 89-226 (293)
175 1wao_1 Serine/threonine protei 97.9 2.9E-05 9.9E-10 72.1 8.3 87 27-119 11-103 (477)
176 3q15_A PSP28, response regulat 97.9 7.2E-05 2.5E-09 65.6 10.3 118 1-119 114-251 (378)
177 3e4b_A ALGK; tetratricopeptide 97.8 0.002 6.9E-08 58.7 19.2 105 3-117 194-314 (452)
178 2kc7_A BFR218_protein; tetratr 97.8 9E-05 3.1E-09 52.1 8.0 75 2-78 14-89 (99)
179 1ihg_A Cyclophilin 40; ppiase 97.8 0.0002 6.8E-09 64.3 11.9 91 23-119 224-336 (370)
180 3dra_A Protein farnesyltransfe 97.8 0.00013 4.5E-09 64.7 10.4 177 3-199 84-285 (306)
181 1dce_A Protein (RAB geranylger 97.7 0.00027 9.4E-09 67.3 12.8 111 4-119 45-173 (567)
182 3rjv_A Putative SEL1 repeat pr 97.7 0.00028 9.7E-09 57.5 11.3 108 2-119 32-158 (212)
183 3u64_A Protein TP_0956; tetrat 97.7 7.1E-05 2.4E-09 66.7 6.9 76 3-78 178-268 (301)
184 2if4_A ATFKBP42; FKBP-like, al 97.6 6.7E-05 2.3E-09 66.2 6.2 93 21-119 178-293 (338)
185 3ma5_A Tetratricopeptide repea 97.6 4.5E-05 1.5E-09 55.0 4.2 59 1-59 20-78 (100)
186 2xm6_A Protein corresponding t 97.6 0.0059 2E-07 55.4 18.2 105 2-118 57-179 (490)
187 3q7a_A Farnesyltransferase alp 97.5 0.00037 1.3E-08 63.2 9.4 127 3-146 69-212 (349)
188 3n71_A Histone lysine methyltr 97.5 0.00027 9.1E-09 66.6 8.5 113 2-117 323-462 (490)
189 1dce_A Protein (RAB geranylger 97.5 0.00034 1.2E-08 66.7 9.1 111 4-119 89-221 (567)
190 3bee_A Putative YFRE protein; 97.4 0.00021 7.2E-09 52.2 5.7 61 18-78 2-71 (93)
191 2xm6_A Protein corresponding t 97.4 0.02 6.9E-07 51.8 19.8 47 3-51 130-180 (490)
192 3n71_A Histone lysine methyltr 97.4 0.00096 3.3E-08 62.8 11.2 87 32-120 319-423 (490)
193 3e4b_A ALGK; tetratricopeptide 97.4 0.0059 2E-07 55.6 16.0 124 2-149 231-370 (452)
194 3dss_A Geranylgeranyl transfer 97.4 0.0023 7.9E-08 57.4 12.9 109 5-119 47-174 (331)
195 3qww_A SET and MYND domain-con 97.3 0.00056 1.9E-08 63.4 8.1 84 35-120 311-412 (433)
196 3bee_A Putative YFRE protein; 97.3 0.0011 3.7E-08 48.3 8.0 55 4-58 25-79 (93)
197 3mv2_B Coatomer subunit epsilo 97.2 0.0018 6E-08 57.8 10.5 110 2-118 114-239 (310)
198 3q7a_A Farnesyltransferase alp 97.2 0.0017 6E-08 58.7 9.6 111 3-119 104-237 (349)
199 1klx_A Cysteine rich protein B 97.2 0.0027 9.2E-08 48.6 9.4 103 3-119 10-126 (138)
200 4b4t_Q 26S proteasome regulato 97.2 0.0052 1.8E-07 53.8 12.4 141 2-146 18-188 (434)
201 3qwp_A SET and MYND domain-con 97.1 0.0022 7.6E-08 59.1 9.8 87 32-120 297-401 (429)
202 1xi4_A Clathrin heavy chain; a 96.9 0.044 1.5E-06 58.1 18.7 66 2-77 1090-1161(1630)
203 3dss_A Geranylgeranyl transfer 96.9 0.037 1.3E-06 49.5 15.6 111 4-119 90-222 (331)
204 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0039 1.3E-07 45.5 6.2 61 1-61 18-85 (104)
205 3qww_A SET and MYND domain-con 96.5 0.0062 2.1E-07 56.3 7.6 81 2-82 312-414 (433)
206 2v5f_A Prolyl 4-hydroxylase su 96.3 0.0065 2.2E-07 44.2 5.6 68 51-119 3-75 (104)
207 3u64_A Protein TP_0956; tetrat 96.3 0.027 9.2E-07 50.1 10.3 78 37-120 178-270 (301)
208 3qwp_A SET and MYND domain-con 96.2 0.011 3.8E-07 54.4 8.0 81 2-82 301-403 (429)
209 1klx_A Cysteine rich protein B 96.1 0.1 3.4E-06 39.5 11.7 106 36-163 9-121 (138)
210 4e6h_A MRNA 3'-END-processing 96.1 0.035 1.2E-06 54.2 11.0 183 2-202 357-571 (679)
211 1b89_A Protein (clathrin heavy 95.9 0.045 1.5E-06 51.2 10.4 124 91-228 150-294 (449)
212 4b4t_Q 26S proteasome regulato 95.5 0.022 7.4E-07 49.7 6.4 117 2-119 69-204 (434)
213 1pc2_A Mitochondria fission pr 95.4 0.018 6.1E-07 46.3 4.8 74 5-78 15-99 (152)
214 1b89_A Protein (clathrin heavy 95.3 0.065 2.2E-06 50.1 9.2 108 1-116 161-308 (449)
215 1pc2_A Mitochondria fission pr 95.0 0.068 2.3E-06 42.9 7.1 79 37-119 13-100 (152)
216 4e6h_A MRNA 3'-END-processing 94.4 0.7 2.4E-05 45.0 14.1 179 7-199 328-531 (679)
217 3mv2_B Coatomer subunit epsilo 94.0 0.49 1.7E-05 41.9 11.2 105 8-118 86-206 (310)
218 1xi4_A Clathrin heavy chain; a 92.6 1.2 4.2E-05 47.4 13.0 135 28-195 1055-1190(1630)
219 2uy1_A Cleavage stimulation fa 92.5 0.54 1.8E-05 43.5 9.4 107 6-119 197-349 (493)
220 1nzn_A CGI-135 protein, fissio 92.0 0.64 2.2E-05 36.0 7.7 79 37-119 16-103 (126)
221 4g26_A Pentatricopeptide repea 91.7 1.8 6E-05 40.2 11.9 115 38-161 86-219 (501)
222 4g26_A Pentatricopeptide repea 91.6 4.6 0.00016 37.4 14.7 156 31-209 35-212 (501)
223 3ffl_A Anaphase-promoting comp 90.5 1.1 3.6E-05 36.5 8.0 84 31-115 29-147 (167)
224 1nzn_A CGI-135 protein, fissio 90.3 0.57 2E-05 36.3 5.9 53 7-59 57-111 (126)
225 3o48_A Mitochondria fission 1 88.6 0.55 1.9E-05 36.9 4.7 53 62-119 55-107 (134)
226 3o48_A Mitochondria fission 1 86.2 1.2 3.9E-05 35.0 5.3 53 8-60 63-116 (134)
227 1y8m_A FIS1; mitochondria, unk 85.6 1.2 3.9E-05 35.4 5.1 51 10-60 64-115 (144)
228 1y8m_A FIS1; mitochondria, unk 84.2 2 6.7E-05 34.1 5.8 53 62-119 54-106 (144)
229 4h7y_A Dual specificity protei 83.2 4.4 0.00015 32.7 7.5 92 5-103 36-141 (161)
230 2ff4_A Probable regulatory pro 82.7 6.4 0.00022 35.1 9.4 79 34-118 127-233 (388)
231 2uy1_A Cleavage stimulation fa 82.5 7.7 0.00026 35.6 10.1 74 35-116 299-380 (493)
232 2ff4_A Probable regulatory pro 80.0 9.9 0.00034 33.9 9.6 77 2-78 129-233 (388)
233 4h7y_A Dual specificity protei 75.5 14 0.00047 29.7 8.2 94 16-119 10-123 (161)
234 3mkq_A Coatomer beta'-subunit; 75.3 45 0.0015 31.0 13.1 101 62-200 664-764 (814)
235 3mkq_A Coatomer beta'-subunit; 74.0 22 0.00075 33.2 10.6 41 33-76 663-707 (814)
236 4gns_B Protein CSD3, chitin bi 66.4 31 0.0011 34.0 10.1 106 5-116 266-397 (754)
237 1zbp_A Hypothetical protein VP 66.3 23 0.0008 30.7 8.2 114 2-119 11-129 (273)
238 4fhn_B Nucleoporin NUP120; pro 60.8 94 0.0032 31.5 12.8 184 14-203 834-1052(1139)
239 3txn_A 26S proteasome regulato 55.2 48 0.0016 30.0 8.6 92 27-119 104-210 (394)
240 3ffl_A Anaphase-promoting comp 50.3 14 0.00048 29.8 3.7 54 23-76 64-148 (167)
241 4gns_B Protein CSD3, chitin bi 43.5 57 0.002 32.1 7.6 52 25-76 340-397 (754)
242 4gq2_M Nucleoporin NUP120; bet 38.9 2.4E+02 0.0081 28.1 11.4 96 11-119 829-926 (950)
243 1zbp_A Hypothetical protein VP 34.4 1.1E+02 0.0036 26.5 7.0 123 62-206 9-134 (273)
244 4b4t_R RPN7, 26S proteasome re 34.2 1.1E+02 0.0039 27.2 7.6 95 24-119 133-237 (429)
245 2crb_A Nuclear receptor bindin 32.9 42 0.0014 24.6 3.6 71 84-159 10-83 (97)
246 3spa_A Mtrpol, DNA-directed RN 30.5 2.6E+02 0.0089 28.9 10.1 93 24-121 129-232 (1134)
247 4b4t_R RPN7, 26S proteasome re 28.9 1E+02 0.0034 27.6 6.3 97 94-203 136-240 (429)
248 3mkq_B Coatomer subunit alpha; 27.9 1.3E+02 0.0045 24.1 6.2 43 1-48 18-60 (177)
249 2uwj_G Type III export protein 22.1 2.5E+02 0.0086 21.0 6.5 70 31-113 13-91 (115)
250 4a1g_A Mitotic checkpoint seri 21.5 1.2E+02 0.0041 23.7 4.7 30 23-52 102-131 (152)
251 2p58_C Putative type III secre 20.3 2.8E+02 0.0094 20.8 7.2 70 31-113 14-92 (116)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.29 E-value=9.5e-11 Score=96.78 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=101.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh-----------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD----------- 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~----------- 63 (229)
.|+.++++...++++..+|+++.++..+|.++...|++++|++..+++++++|+++.++.. .+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 97 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 4899999999999999999999999999999999999999999999999999999988776 57
Q ss_pred CCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..++++.. .+|-. .-.|-.+|..+...| ++++|++.|++.+..
T Consensus 98 g~~~~A~~~~~~al~----~~P~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 98 GYLEQALSVLKDAER----VNPRY-APLHLQRGLVYALLG-ERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----hCccc-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 999999999999988 34431 234457999999997 999999999999887
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.23 E-value=5.5e-11 Score=94.98 Aligned_cols=103 Identities=12% Similarity=0.015 Sum_probs=91.1
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCC
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCS 84 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~ 84 (229)
..+++..+|+++.++..+|..+.+.|+|++|++..+++++++|+++.++.. .+|++++|+..++++... +
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----~ 100 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----G 100 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----C
Confidence 456777889999999999999999999999999999999999999999887 799999999999999883 3
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 85 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 85 ~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|-. ...|.++|.+|+.+| ++++|++.|++.+..
T Consensus 101 P~~-~~~~~~lg~~~~~lg-~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 KND-YTPVFHTGQCQLRLK-APLKAKECFELVIQH 133 (151)
T ss_dssp SSC-CHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 321 234558999999997 999999999999886
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.20 E-value=1.4e-10 Score=95.82 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=100.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCChhhHHH------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-----------GQMSDAEEAAKKGLKINKHDCWSQHA------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-----------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~ 63 (229)
.|+.+.+....++++...|+++.++..+|.++... |++++|++..++|++++|+++.++.. .+
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999999 99999999999999999999988776 79
Q ss_pred CCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..++++...- . + .-.+..+|.+++..| ++++|+..|++.+..
T Consensus 132 g~~~~A~~~~~~al~~~-~-~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-D-T----PEIRSALAELYLSMG-RLDEALAQYAKALEQ 180 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-C-C----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcc-c-c----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999999999998732 1 2 234558999999997 999999999998876
No 4
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=1.1e-10 Score=91.57 Aligned_cols=112 Identities=8% Similarity=-0.037 Sum_probs=97.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.++++...+++++..|+++..+..+|-.+.+.|+|++|++..++||+++|+++.++.. .+|++++|+..+++
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999998887 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH-Hhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY-DNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~y-d~~i~~ 119 (229)
+.. .+|-. .-.+..+|.+++..| +++++.+.| ++.+.-
T Consensus 91 al~----~~p~~-~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 91 SVE----LNPTQ-KDLVLKIAELLCKND-VTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHH----HCTTC-HHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHH
T ss_pred HHH----hCCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 988 44432 234557999999987 888877664 777765
No 5
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.13 E-value=3.1e-10 Score=89.01 Aligned_cols=105 Identities=12% Similarity=-0.022 Sum_probs=92.2
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccC
Q 026999 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 9 ~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~ 82 (229)
....+++...|.+...+..+|..+...|+|++|++..+++++++|+++.++.. .+|++++|+..++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 84 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--- 84 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 45678888999999999999999999999999999999999999999988877 799999999999999873
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 83 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 83 ~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|-. .-.+..+|.+++..| ++++|++.|++.+..
T Consensus 85 -~p~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 -DIXE-PRFPFHAAECLLQXG-ELAEAESGLFLAQEL 118 (148)
T ss_dssp -STTC-THHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred -CCCC-chHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 3321 234567999999997 999999999998876
No 6
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=1.2e-09 Score=107.53 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=102.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+++....++++..+|+++.++..+|.++...|++++|++..++||+++|+++.++.. .+|++++|+..++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999887 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|-. .-.|-.+|..|.++| ++++|++.|++.+..
T Consensus 102 kAl~----l~P~~-~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 102 RAIQ----INPAF-ADAHSNLASIHKDSG-NIPEAIASYRTALKL 140 (723)
T ss_dssp HHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHH----hCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9988 44431 233447999999997 999999999999876
No 7
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.08 E-value=1.5e-09 Score=83.47 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=89.4
Q ss_pred HHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCC
Q 026999 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSC 83 (229)
Q Consensus 10 ~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~ 83 (229)
...+++...|++...+..+|..+...|+|++|++..+++++++|+++.++.. .+|++++|+..++++.. .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~ 81 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL----M 81 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----c
Confidence 5677888899999999999999999999999999999999999999988877 79999999999999988 3
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 84 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 84 ~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.. ...+.++|.+++..| ++++|++.|++.+..
T Consensus 82 ~p~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 82 DINE-PRFPFHAAECHLQLG-DLDGAESGFYSARAL 115 (142)
T ss_dssp CTTC-THHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 3332 235568999999997 999999999998766
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.07 E-value=1.5e-09 Score=82.89 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=87.3
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCC
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCS 84 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~ 84 (229)
..|+...+|+.+..+...|-.+...|+|++|++..++||+++|+++.++.. ..|++++|+..+++++. .+
T Consensus 2 ~ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~ 77 (126)
T 4gco_A 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR----LD 77 (126)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HC
T ss_pred hhHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH----hh
Confidence 356777899999999999999999999999999999999999999988877 79999999999999988 34
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 85 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 85 ~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|. ..-.|..+|.+++.+| ++++|++.|++.+.-
T Consensus 78 p~-~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 SK-FIKGYIRKAACLVAMR-EWSKAQRAYEDALQV 110 (126)
T ss_dssp TT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 33 2235567999999997 999999999998876
No 9
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.06 E-value=4.4e-08 Score=77.70 Aligned_cols=180 Identities=10% Similarity=0.033 Sum_probs=127.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh-CCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD-CCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~-Gr~~egi~~l 73 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|.+..+++++++|+++.+... .. |++++++..+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988776 68 9999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 153 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~ 153 (229)
++... ...+|. ....+..+|.++...| ++++|+..|++.+... +. .......-+.++.++ |
T Consensus 101 ~~~~~--~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~la~~~~~~---~------- 161 (225)
T 2vq2_A 101 DKALA--DPTYPT-PYIANLNKGICSAKQG-QFGLAEAYLKRSLAAQ--PQ---FPPAFKELARTKMLA---G------- 161 (225)
T ss_dssp HHHHT--STTCSC-HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS--TT---CHHHHHHHHHHHHHH---T-------
T ss_pred HHHHc--CcCCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---CchHHHHHHHHHHHc---C-------
Confidence 99987 221222 2356667999999997 9999999999888752 11 122222222222221 1
Q ss_pred cHHHHHHHHHhh---hh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 154 RLKVLADCVADQ---AN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 154 rW~~la~~~~~~---~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++++-...+..- .+ .....+ ......+...|+.+.+...++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 233333333221 11 222111 22344456788888888888887654
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.05 E-value=3.6e-10 Score=103.05 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=101.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~-~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.|+.++++....+++..+|.+..++..+|.++...|+ +++|++..++||+++|+++.+++. ..|++++++.++
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4788999999999999999999999999999999996 999999999999999999999888 789999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++. .+|- ..+.|-+++.++..+| ++++|++.|++.|..
T Consensus 190 ~kal~----ldP~-~~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 190 ADILN----QDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHH----HCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHH
T ss_pred HHHHH----hCcc-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Confidence 99988 4544 3577889999999987 999999999998876
No 11
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.03 E-value=3.5e-09 Score=83.35 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=73.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.++++...++++..+|+++.++..+|.++...|++++|++..++++..+|+++.+... ..+++++++..+++
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQR 98 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777766555 45666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|. ....+..+|.++...| ++++|++.|++.+..
T Consensus 99 a~~~----~~~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 99 AIAL----NTV-YADAYYKLGLVYDSMG-EHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHh----Ccc-chHHHHHHHHHHHHhC-CchhHHHHHHHHHHh
Confidence 5552 221 1123334566666654 666666666665554
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.02 E-value=9.1e-09 Score=80.96 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.++....+++...|.++.+...+|..+...++++.|.+..+++++++|+++.+... .+|++++|+..++
T Consensus 52 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 52 IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3677777777777777777777777777777777777777777777777777777776666 5777777777777
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|.. ...|-.+|.+|..+| ++++|++.|++.|..
T Consensus 132 ~~l~----~~p~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 132 KTIS----IKPGF-IRAYQSIGLAYEGKG-LRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHH----hcchh-hhHHHHHHHHHHHCC-CHHHHHHHHHHHHhC
Confidence 7766 23321 234446777777775 777777777776654
No 13
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.02 E-value=8.3e-09 Score=93.99 Aligned_cols=114 Identities=7% Similarity=-0.006 Sum_probs=100.5
Q ss_pred CCC-hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGR-PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~-~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
+|+ .+.++....+++..+|.+..++..+|.++...|++++|++..++||+++|+++.++.. ..|++++++.++
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 475 9999999999999999999999999999999999999999999999999999998887 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-----HHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-----LEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~A-----l~~yd~~i~~ 119 (229)
++++. .+|. ....|.+++..+..++|.+++| ++.|++.|..
T Consensus 224 ~~al~----l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 224 DQLLK----EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHH----HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----hCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 99998 4543 2356678999998855465777 5889998876
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.01 E-value=5.8e-08 Score=79.34 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=127.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++++|+++.+... .+|++++|+..++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999999999877666 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+... ...+|. ....+..+|..++..| ++++|++.|++.+... +. .......-+.++ .. ..+
T Consensus 130 ~~~~--~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~--~~---~~~~~~~la~~~----~~------~g~ 190 (252)
T 2ho1_A 130 EASQ--DTLYPE-RSRVFENLGLVSLQMK-KPAQAKEYFEKSLRLN--RN---QPSVALEMADLL----YK------ERE 190 (252)
T ss_dssp HHTT--CTTCTT-HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHH----HH------TTC
T ss_pred HHHh--CccCcc-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHH----HH------cCC
Confidence 9987 111222 2345567999999987 9999999999888752 11 121122222222 21 123
Q ss_pred HHHHHHHHHhhhhccccchhhHHH--HHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 155 LKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
++.-...+..-..... ...+.+. ...+...|+.+.+.+.++.+.+..
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4444444433221111 1223333 344567888888888887776653
No 15
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=9.9e-09 Score=74.27 Aligned_cols=112 Identities=13% Similarity=0.233 Sum_probs=96.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++..+..+|..+...|++++|++..++++.++|+++.+... ..|++++|+.++++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 788999999999998888899999999999999999999999999999999999877665 78999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. ..-.+..+|..+...| ++++|+..|++.+..
T Consensus 95 ~~~~~~~-----~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 95 ALELDPR-----SAEAWYNLGNAYYKQG-DYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHhCCC-----ChHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc
Confidence 9873222 1234567899999987 999999999887754
No 16
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.97 E-value=9.8e-09 Score=78.70 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=78.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.++.++..+|..+...|++++|.+..+++++++|+++.+... ..|++++++..+++
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 667777777777777777777777777777777777777777777777777777766555 56777777777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. ....+..+|..+...| ++++|++.|.+.+..
T Consensus 102 ~~~~~~~-----~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 102 VAEANPI-----NFNVRFRLGVALDNLG-RFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCcH-----hHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhc
Confidence 7663222 1233445677777775 777777777776655
No 17
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=2.3e-08 Score=83.40 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=98.5
Q ss_pred CCChhHHHHHHHhhCCCCCCc---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------h------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------H------ 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~------ 62 (229)
.|+.+.+....++++..+|.+ +.++..+|.++...|+|++|+...++++.++|+++...-+ .
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 489999999999999998888 7889999999999999999999999999999987654333 4
Q ss_pred --hCCHHHHHHHHHHchhhccCCCCcchhhhH--------------HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 --DCCFKEAVQFMEECSSTWSSCSSFMYTHNW--------------WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 --~Gr~~egi~~le~~~~~w~~~~~~~~~H~~--------------WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+..+++.....+. ++. ..-.. ..+|.+|+..| ++++|+..|++.+..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~-~~~-~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPN-HEL-VDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDA 177 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTT-CTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCcC-chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 89999999999999987666 322 21122 67899999997 999999999998875
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.94 E-value=1.1e-07 Score=79.89 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=80.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
|+.+.+.....+++...|.++.++..+|..+...| ++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 66777777777777777777777777788787888 7888888888888888887766655 6788888888887
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-+. + .-.+..+|..++..| ++++|++.|++.+..
T Consensus 150 ~a~~~~~~-~----~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 150 TAAQLMKG-C----HLPMLYIGLEYGLTN-NSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHTTT-C----SHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhccc-c----HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 77763332 1 122334777777776 788888888776654
No 19
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=8.4e-09 Score=84.08 Aligned_cols=117 Identities=9% Similarity=0.007 Sum_probs=100.9
Q ss_pred CCChhHHHHHHHhhCCCCC-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.|+.+.+.....+++...| .++.++..+|.++...|++++|++..++|++++|+++.++.. .+|++++|+..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4889999999999999888 888888889999999999999999999999999999988877 799999999999
Q ss_pred HHchhhccCCCCcch---hhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMY---THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~---~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++...-+. ++... .-.+..+|..++..| ++++|++.|++.+..
T Consensus 100 ~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 100 TEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred HHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhc
Confidence 999884444 22111 124667999999997 999999999998875
No 20
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=7.2e-08 Score=84.30 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=56.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.....+++...|+++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++++..+++
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555566666666655555555555555555555556666655555555555555544443 34555555555555
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.. .+|- ....+..++..+...| ++++|++.|++.+.
T Consensus 229 al~----~~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 229 ALS----LSPN-HAVVHGNLACVYYEQG-LIDLAIDTYRRAIE 265 (388)
T ss_dssp HHH----HCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHh----hCcC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 444 1111 1122223444444443 55555555544443
No 21
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=5.3e-09 Score=85.61 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGI----------------LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~----------------~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
.|+.+.+.....+++..+|+++.++.. +|.++...|++++|++..+++|+++|+++.++..
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 96 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 477888888888888888888777777 8888888888888888888888888888877766
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCc-------------------------------chhhhHHHHHHHHHhCCCCHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSF-------------------------------MYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~-------------------------------~~~H~~WHlAL~~l~~gg~~d 107 (229)
.+|++++|+..++++...-+. ++. .....++..++.++..| +|+
T Consensus 97 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~-~~~ 174 (208)
T 3urz_A 97 MQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT-RYE 174 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH-THH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc-CHH
Confidence 688888888888888663222 100 00012344555666665 788
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
+|+..|++.|..
T Consensus 175 ~A~~~~~~al~l 186 (208)
T 3urz_A 175 KARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 888888877765
No 22
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.93 E-value=1e-08 Score=80.53 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=95.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCH--HHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCF--KEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~--~egi~~ 72 (229)
|+.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++ ++|+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 677788888999999999999999999999999999999999999999999999877665 46898 999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.... +|. ..-.+..+|.+++..| ++++|+..|++.+..
T Consensus 104 ~~~al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 104 IDKALAL----DSN-EITALMLLASDAFMQA-NYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHh----CCC-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhh
Confidence 9999873 332 1235567999999997 999999999998876
No 23
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.92 E-value=4.1e-09 Score=103.75 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.++++...++++..+|+++.++..+|.++.+.|++++|++..++||+++|+++.++.. .+|++++|++.++
T Consensus 56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999887 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.+ .+|-. ...+.++|..+...| ++++|.+.|++.+.-
T Consensus 136 ~Al~----l~P~~-~~a~~~L~~~l~~~g-~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 136 TALK----LKPDF-PDAYCNLAHCLQIVC-DWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHH----HCSCC-HHHHHHHHHHHHHTT-CCTTHHHHHHHHHHH
T ss_pred HHHH----hCCCC-hHHHhhhhhHHHhcc-cHHHHHHHHHHHHHh
Confidence 9998 44432 345568999999997 999999999877654
No 24
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.92 E-value=2.5e-08 Score=76.39 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=63.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.++.++..+|..+...|++++|++..++++.++|+++.+... ..|++++|+..+++
T Consensus 56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 555566666666665555556666666666666666666666666666666665554443 45666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.... +|. ....+..+|.++...| ++++|++.|++.+..
T Consensus 136 ~~~~----~~~-~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGL----RPN-EGKVHRAIAFSYEQMG-RHEEALPHFKKANEL 173 (186)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhc----Ccc-chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 5552 111 1233345565655554 666666666555443
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.92 E-value=1.8e-07 Score=78.40 Aligned_cols=113 Identities=10% Similarity=0.001 Sum_probs=99.7
Q ss_pred CC-ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MG-RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G-~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.| +.+.+....++++...|.++.++..+|..+...|++++|++..+++++++|++..+... ..|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36 78899999999999999999999999999999999999999999999999998877766 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++... +|. ....+-.+|..++..| ++++|+..|++.+..
T Consensus 183 ~~al~~----~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 183 SQALSI----APE-DPFVMHEVGVVAFQNG-EWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHTT----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHh----CCC-ChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 999883 332 1244557999999997 999999999998875
No 26
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=8.7e-08 Score=83.78 Aligned_cols=76 Identities=17% Similarity=0.045 Sum_probs=39.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+....++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 47 ~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555544333 34444444444444
Q ss_pred ch
Q 026999 76 CS 77 (229)
Q Consensus 76 ~~ 77 (229)
..
T Consensus 127 al 128 (388)
T 1w3b_A 127 AL 128 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.91 E-value=7.1e-08 Score=77.78 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=121.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3778888889999999999999999999999999999999999999999999999888776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+.....+. + ...+..+|.+++..| ++++|+..|++.+... +. .......-+.++.+. | +
T Consensus 116 ~~~~~~~~-~----~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~---~-------~ 174 (243)
T 2q7f_A 116 KALRAGME-N----GDLFYMLGTVLVKLE-QPKLALPYLQRAVELN--EN---DTEARFQFGMCLANE---G-------M 174 (243)
T ss_dssp HHHHHTCC-S----HHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHHH---T-------C
T ss_pred HHHHhCCC-C----HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC--Cc---cHHHHHHHHHHHHHc---C-------C
Confidence 99874333 1 234567999999997 9999999999988662 11 122222222222221 1 2
Q ss_pred HHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 155 LKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 155 W~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
+++-...+..-.. .+..+..-...+.++...|+.+.+.+.++...+.
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 2222222222111 1111122233355667788888887777766554
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.91 E-value=1.9e-07 Score=80.15 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=119.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4788888999999998888888888899999999999999999999999999998887766 6888888888888
Q ss_pred HchhhccCCCCcc----------------------------------------------hhhhHHHHHHHHHhCCCCHHH
Q 026999 75 ECSSTWSSCSSFM----------------------------------------------YTHNWWHVALCYLEGHSPMRK 108 (229)
Q Consensus 75 ~~~~~w~~~~~~~----------------------------------------------~~H~~WHlAL~~l~~gg~~d~ 108 (229)
+.....+...... ....+..+|.++...| ++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~ 235 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK 235 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHH
Confidence 7765333211111 1234556888888886 8888
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCC
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGE 187 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~ 187 (229)
|+..|++.+... ++ ....+..-+.++.+ ..++++-...+..-.. .+..+..-.....++...|+
T Consensus 236 A~~~~~~al~~~--~~---~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 236 AVDCFTAALSVR--PN---DYLLWNKLGATLAN----------GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHHC--TT---CHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC--cC---CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 888888877652 11 12122222222221 1123333333333211 12212222233556667788
Q ss_pred cHHHHHHHHHHHHHh
Q 026999 188 VSKAEDLLKGLKSRH 202 (229)
Q Consensus 188 ~~~~~~ll~~~~~~~ 202 (229)
.+.+.+.+...-+..
T Consensus 301 ~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 301 HREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 877777666655543
No 29
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.89 E-value=1.5e-08 Score=77.32 Aligned_cols=114 Identities=9% Similarity=0.022 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999887766 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++...-+. ....+...-.+..++..| ++++|++.|.+...
T Consensus 106 ~a~~~~p~---~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 106 TVVKVKPH---DKDAKMKYQECNKIVKQK-AFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHSTT---CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHH-HHHHHHHcccchHH
Confidence 99873222 112333344555577776 99999999976543
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.88 E-value=1e-07 Score=82.45 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=64.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. .+|++++|+..+++
T Consensus 79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 778888888888888888888888888888888888888888888888888888877766 68888888888887
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 159 al~ 161 (365)
T 4eqf_A 159 WIK 161 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
No 31
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.87 E-value=1e-06 Score=74.28 Aligned_cols=185 Identities=8% Similarity=-0.038 Sum_probs=128.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++++..++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccCCCCcchhhhHH----------HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 75 ECSSTWSSCSSFMYTHNWW----------HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~W----------HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
++....+. + ...+.++ -.|..++..| ++++|++.|++.+... ++ .......+...+-....
T Consensus 213 ~a~~~~~~-~--~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 213 ECLKLDQD-H--KRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTE--PS---VAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHCTT-C--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--CS---SHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcc-c--hHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--CC---chHHHHHHHHHHHHHHH
Confidence 99874443 1 1222222 3488888987 9999999999988762 22 12112222222222222
Q ss_pred cCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 145 RGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 145 ~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
. ..+++.-...+..-.. .+..+..=.....++...|+.+.+.+.++..-+
T Consensus 284 ~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 284 K------DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp H------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H------ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1234444333333221 222223333446677788888877776665543
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.87 E-value=3e-07 Score=77.60 Aligned_cols=180 Identities=9% Similarity=-0.026 Sum_probs=125.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccCCCC---cchhhh------------HHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH
Q 026999 75 ECSSTWSSCSS---FMYTHN------------WWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 139 (229)
Q Consensus 75 ~~~~~w~~~~~---~~~~H~------------~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL 139 (229)
+... .+| - .... ++.+|..+...| ++++|++.|++.+... +. .......-+.++
T Consensus 96 ~~~~----~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~~ 164 (359)
T 3ieg_A 96 KVLK----SNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVC--VW---DAELRELRAECF 164 (359)
T ss_dssp HHHT----SCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHH
T ss_pred HHHh----cCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC--CC---chHHHHHHHHHH
Confidence 9988 333 1 1112 233478889987 9999999999988762 11 122222222222
Q ss_pred HHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 140 LRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 140 wRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.++ .+++.-...+..-.. .+..+..=.....++...|+.+.+.+.+...-+.
T Consensus 165 ~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 165 IKE----------GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHT----------TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 221 234444444433221 2222222233355566778877777666555443
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.86 E-value=1.1e-08 Score=88.64 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=100.6
Q ss_pred CCChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
.|+.+.++...++++...|. ++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36788999999999999998 89999999999999999999999999999999999988877 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++++... +|- ....+..+|.++...| ++++|++.|++.+...
T Consensus 270 ~~~al~~----~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 270 YTRALEI----QPG-FIRSRYNLGISCINLG-AYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHH----CTT-CHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCC-chHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999883 332 1345667999999997 9999999999988763
No 34
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.86 E-value=3.2e-08 Score=80.58 Aligned_cols=114 Identities=7% Similarity=0.031 Sum_probs=97.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh-------HHH------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS-------QHA------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA-------~Ha------~~Gr~~ 67 (229)
+|+.+.++...++++...|.++.++..+|.++...|++++|++..+++++++|+++.. +.. ..|+++
T Consensus 55 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 55 IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 5899999999999999999999999999999999999999999999999999999832 332 699999
Q ss_pred HHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCH---------------------------HHHHHHHHhhchh
Q 026999 68 EAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPM---------------------------RKVLEIYDNHIWK 119 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~---------------------------d~Al~~yd~~i~~ 119 (229)
+|+..++++.. .+|- .....+-.+|.+++..| +. ++|+..|++.+..
T Consensus 135 ~A~~~~~~al~----~~p~~~~~~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 135 KAEENYKHATD----VTSKKWKTDALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCcccHHHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999988 4443 01245567899988886 77 8899999888765
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.85 E-value=7.7e-07 Score=73.21 Aligned_cols=187 Identities=13% Similarity=0.038 Sum_probs=102.8
Q ss_pred CCChhHHHHHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
+|+.+.++....+++. .|.++ .++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+
T Consensus 50 ~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 3667777777777776 33322 336677777777777777777777777777777766655 577777777
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHH-HHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcC-Cc
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVA-LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRG-EL 148 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlA-L~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G-~~ 148 (229)
..++++... +|. ..-.+..+| .++.. + ++++|++.|++.+... ++ .......-+.++..+.-.. .+
T Consensus 129 ~~~~~al~~----~~~-~~~~~~~l~~~~~~~-~-~~~~A~~~~~~a~~~~--p~---~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 129 QYMEKQIRP----TTT-DPKVFYELGQAYYYN-K-EYVKADSSFVKVLELK--PN---IYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp HHHGGGCCS----SCC-CHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHS--TT---CHHHHHHHHHHHHHHSTTCSSC
T ss_pred HHHHHHhhc----CCC-cHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhC--cc---chHHHHHHHHHHHHcCcchhhH
Confidence 777777762 332 223445677 55444 3 7777777777766552 11 1222233333333331100 00
Q ss_pred ccccccHHHHHHHHHhhhhccccchhhHHH--HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 149 DVFGNRLKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 149 v~vg~rW~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
..-..++...+......+.......+++. ...+...|+.+.+.+.++..-+.
T Consensus 197 -~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 197 -LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp -TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00124455544443322211112234444 44456678888777666655443
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.84 E-value=7.4e-08 Score=78.67 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=53.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++ .+|+++.+... ..|++++|+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555 44444444333 355555555555
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++.... +|. ....+..+|..++..| ++++|+..|++.+.
T Consensus 165 ~~~~~~----~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 165 EKSLRL----NRN-QPSVALEMADLLYKER-EYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHH----CSC-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHhc----Ccc-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 555441 111 1122334555555544 55555555554443
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=3.2e-08 Score=73.52 Aligned_cols=94 Identities=13% Similarity=0.037 Sum_probs=80.7
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
..+..+...|..+...|+|++|++..++|++++|+++.++.. ..|++++|+..++++.. .+|. ....+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~-~~~~~~ 76 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPN-FVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC-cHHHHH
Confidence 345667788899999999999999999999999999988777 79999999999999988 3433 234566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.++...| ++++|+..|++.+..
T Consensus 77 ~lg~~~~~~~-~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 77 RKATAQIAVK-EYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHh
Confidence 8999999997 999999999988875
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.84 E-value=2.9e-08 Score=80.10 Aligned_cols=113 Identities=8% Similarity=0.047 Sum_probs=99.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.+... ..|++++|+..++
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+....-+. ....+..+|..++..| ++++|++.|++.+..
T Consensus 150 ~~~~~~~~-----~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 150 RAVELNEN-----DTEARFQFGMCLANEG-MLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHCTT-----CHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHH
T ss_pred HHHHhCCc-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99873322 1235567999999987 999999999988776
No 39
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=6.9e-08 Score=77.22 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....++++. ++.++..+|.++...|++++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 19 ~~~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 95 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95 (213)
T ss_dssp TTCHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence 48899999999999733 67899999999999999999999999999999999988776 7999999999999
Q ss_pred HchhhccCCCC----------c--chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSS----------F--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~----------~--~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-+. ++ + .....+..+|.+++..| ++++|++.|++.+.-
T Consensus 96 ~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 96 EALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHc
Confidence 99874433 11 0 12245668999999997 999999999998876
No 40
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=4.1e-08 Score=91.72 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=71.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++....++++..+|+++.++..+|..+...|++++|++..++|++++|+++.++.. .+|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677788888888888888888888888888888888888888888888888888777666 67888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|- ..-.+-.+|.+++..| ++++|++.|++.+..
T Consensus 83 al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 83 ASDA----APE-HPGIALWLGHALEDAG-QAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhc----CCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 8773 222 1233446888888876 888888888877765
No 41
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.82 E-value=4.1e-08 Score=76.59 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.+.++..+..+|..+...|+|++|++..+++++++|+++.++.. ..|++++|+..+++++. .+|. ....
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~-~~~~ 81 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV----VDPK-YSKA 81 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCC-CHHH
Confidence 44577888999999999999999999999999999999988777 79999999999999988 3333 2356
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|..+|.+++.+| ++++|++.|++.+...
T Consensus 82 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 82 WSRLGLARFDMA-DYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence 668999999997 9999999999988763
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4.1e-08 Score=79.49 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=90.8
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++++.
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444888889999999999999999999999999999999999877766 7999999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|. ....+..+|.++...| ++++|+..|++.+..
T Consensus 201 ~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 201 EK----DPN-FVRAYIRKATAQIAVK-EYASALETLDAARTK 236 (258)
T ss_dssp HH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred Hh----CHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 83 332 2345667999999997 999999999988765
No 43
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.81 E-value=3.1e-08 Score=83.10 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=99.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999999999988776 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 232 a~~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 232 ALDI----NPG-YVRVMYNMAVSYSNMS-QYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHc----CCC-CHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 9873 322 2346678999999997 999999999988776
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.81 E-value=3.1e-07 Score=82.86 Aligned_cols=197 Identities=10% Similarity=0.037 Sum_probs=133.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc-hhhhhhHHHHHHHHhhcCCc-cccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH-PEVYLNALGLLLRVYVRGEL-DVFG 152 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~-~~~~~Da~sLLwRL~l~G~~-v~vg 152 (229)
+.....+. + ...+-.+|.++...| ++++|++.|++.+...-....... ...+..-+.++.++.-.+.. .. .
T Consensus 369 ~~~~~~~~-~----~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 441 (537)
T 3fp2_A 369 ETKLKFPT-L----PEVPTFFAEILTDRG-DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD-E 441 (537)
T ss_dssp HHHHHCTT-C----THHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC-H
T ss_pred HHHHhCCC-C----hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh-H
Confidence 99884333 1 234456899999997 999999999998765321111000 01112223333333111100 00 1
Q ss_pred ccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 026999 153 NRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 153 ~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
.++++-......-.. ++..+..-.....++...|+.+.+.+.++..-+....
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 344444444443221 2222333344567788899988888877776665433
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.80 E-value=2.6e-08 Score=81.89 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=88.5
Q ss_pred CChhHHHHHHHhhCCC----CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~----~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
|+.+.++....+++.. .|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5667788888888775 24567788888888999999999999999999999998887776 6889999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.++++... +|. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 99 ~~~~al~~----~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 99 AFDSVLEL----DPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHH----CTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----Ccc-ccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 99988873 322 1234556888888886 899999999888765
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.80 E-value=1.2e-07 Score=77.90 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=43.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555554444 45555555555555
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 137 a~~ 139 (275)
T 1xnf_A 137 FYQ 139 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 47
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.80 E-value=6.4e-07 Score=79.09 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=124.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. .+|++++|+..++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccCCCCcch----hh----------hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHH
Q 026999 75 ECSSTWSSCSSFMY----TH----------NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 140 (229)
Q Consensus 75 ~~~~~w~~~~~~~~----~H----------~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLw 140 (229)
+... .+|... .+ .++.+|..++..| ++++|+..|++.+... +. .......-+.++.
T Consensus 119 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 119 KVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVC--VW---DAELRELRAECFI 188 (450)
T ss_dssp HHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHH
T ss_pred HHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---ChHHHHHHHHHHH
Confidence 9987 333211 11 1455688888987 9999999999888652 11 1222333333332
Q ss_pred HHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 141 RVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 141 RL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++ |. ..+-.+.+-..... .+.. +..=...+.++...|+.+.+.+.+..+...
T Consensus 189 ~~---g~---~~~A~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 189 KE---GE---PRKAISDLKAASKL-KNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HT---TC---GGGGHHHHHHHHHH-HCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HC---CC---HHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 21 12212222222221 1111 222223355677788888887777766543
No 48
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=8.8e-09 Score=99.75 Aligned_cols=112 Identities=11% Similarity=-0.064 Sum_probs=100.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.++++...++++..+|+++.++..+|.++...|+|++|++..++||+++|+++.++.. .+|++++ +..++
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 3889999999999999999999999999999999999999999999999999999988877 7999999 99999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|-. .-.|..+|.+++.+| ++++|++.|++.+..
T Consensus 525 ~al~----~~P~~-~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 525 TVWS----TNDGV-ISAAFGLARARSAEG-DRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHTSCTT
T ss_pred HHHH----hCCch-HHHHHHHHHHHHHcC-CHHHHHHHHHhhccc
Confidence 9987 44432 235567999999997 999999999998765
No 49
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=2e-08 Score=80.01 Aligned_cols=78 Identities=14% Similarity=-0.037 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++..+|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999998887 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 129 ~al~ 132 (151)
T 3gyz_A 129 LVIQ 132 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.78 E-value=8.3e-07 Score=81.97 Aligned_cols=181 Identities=9% Similarity=-0.032 Sum_probs=128.8
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH-HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM-SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~-d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
+.++....+.....|.++.++..+|..+...|+| ++|++..++||+++|+++.++.. .+|++++|+..++++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666788999999999999999999 99999999999999999988887 7999999999999999
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhC---------CCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh-cCC
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEG---------HSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RGE 147 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~---------gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l-~G~ 147 (229)
. .+|- . ..+-.+|..+... | ++++|++.|++.+... ++ .......-..++.++.+ .|.
T Consensus 165 ~----~~p~-~-~~~~~lg~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~--p~---~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 165 T----HCKN-K-VSLQNLSMVLRQLQTDSGDEHSR-HVMDSVRQAKLAVQMD--VL---DGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp T----TCCC-H-HHHHHHHHHHTTCCCSCHHHHHH-HHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred h----hCCC-H-HHHHHHHHHHHHhccCChhhhhh-hHHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHHHHHhhcc
Confidence 8 4554 2 5556799999998 8 9999999999988762 22 23334444444444422 222
Q ss_pred cccccccHHHHHHHHHhhhh-cc---ccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 148 LDVFGNRLKVLADCVADQAN-WY---LECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 148 ~v~vg~rW~~la~~~~~~~~-~~---~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
+ ..++++-...+..-.. ++ ..+..=.....++...|+.+.+.+.++..-+
T Consensus 233 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 233 N---PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp C---HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c---cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2456665555554332 33 3333334446677788888877766655443
No 51
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=6e-08 Score=90.55 Aligned_cols=114 Identities=5% Similarity=-0.162 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+++....++++..+|+++.++..+|..+...|++++|++..++|++++|+++.++.. .+|++++|+..++
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhC---CCCHHHHHHHHHhhchhh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~---gg~~d~Al~~yd~~i~~~ 120 (229)
++... +|- ....+..++.++... | ++++|++.|++.+...
T Consensus 116 ~al~~----~p~-~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 116 RAHQL----LPE-EPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH----CTT-CHHHHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHT
T ss_pred HHHHh----CCC-CHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcC
Confidence 99883 332 124556799999998 7 9999999999988773
No 52
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.78 E-value=3.5e-08 Score=84.75 Aligned_cols=112 Identities=10% Similarity=0.050 Sum_probs=98.2
Q ss_pred CChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++....+++...|. ++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6778899999999999998 88999999999999999999999999999999999988777 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++... +|- ....+..+|.+++..| ++++|+..|++.+..
T Consensus 275 ~~al~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 275 RRALEL----QPG-YIRSRYNLGISCINLG-AHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHH----CTT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHh----CCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 999873 332 1244567999999997 999999999988775
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.77 E-value=7.3e-08 Score=78.70 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=94.9
Q ss_pred CCChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L--------nP~dawA~Ha--- 61 (229)
+|+.+.++....+++.. .|....++..+|.++...|++++|++..++|+++ +|+.+.++..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 48888999999988864 4667789999999999999999999999999999 4555555554
Q ss_pred ---hhCCHHHHHHHHHHchhhccCC----CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSC----SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~----~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++....... +|. ....+..+|.+++..| ++++|+..|++.+..
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-VAKTKNNLASCYLKQG-KYQDAETLYKEILTR 198 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 6999999999999998743221 222 3456667999999997 999999999998864
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.75 E-value=6.9e-08 Score=76.56 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=97.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-CCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-GQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
.|+.+.++...++++...|.++.++..+|..+... |++++|++..+++++ .+|+++.++.. ..|++++|+.
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 48899999999999999999999999999999999 999999999999999 56665666555 7999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++.... +|. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 135 ~~~~~~~~----~~~-~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 135 YLKRSLAA----QPQ-FPPAFKELARTKMLAG-QLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHH----STT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCC-CchHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999873 222 1345667999999997 999999999998876
No 55
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=1.3e-07 Score=70.38 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.+.++..+..+|..+...|+|++|++..+++++++|+++.++.. ..|++++|+..++++... +|. ....
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~-~~~~ 79 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQ-SVKA 79 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-CHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----Cch-hHHH
Confidence 46678889999999999999999999999999999999988777 799999999999999883 332 2345
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|..+|.+++..| ++++|+..|.+.+..
T Consensus 80 ~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEME-SYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 567999999997 999999999988865
No 56
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=5.3e-08 Score=77.11 Aligned_cols=112 Identities=15% Similarity=-0.008 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
.|+.+++....++++..+|+++.++..+|.++...|++++|++..+++++++| ++..... .+++..+++..+
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~ 97 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL 97 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence 48899999999999999999999999999999999999999999999999999 7754433 223344578888
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++... +|-. .-.+-.+|.++...| ++++|++.|++.+..
T Consensus 98 ~~al~~----~P~~-~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 98 EQELAA----NPDN-FELACELAVQYNQVG-RDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHH----STTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHh----CCCC-HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHh
Confidence 888772 3321 123346899999987 999999999988876
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.74 E-value=7.3e-08 Score=89.08 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=70.9
Q ss_pred CCh-hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh---------CC
Q 026999 2 GRP-DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD---------CC 65 (229)
Q Consensus 2 G~~-~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~---------Gr 65 (229)
|+. ++++...++++..+|.++.++..+|.++...|++++|++..++|++++|+ +.++.. .. |+
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh
Confidence 566 67777777777777777777777777777777777777777777777776 444333 34 66
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~--------gg~~d~Al~~yd~~i~~ 119 (229)
+++|+..++++...-+. ....|..+|.+++.. | ++++|++.|++.+..
T Consensus 195 ~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVL-----DGRSWYILGNAYLSLYFNTGQNPK-ISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHh
Confidence 77777777776652222 122344566666665 5 677777777666654
No 58
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=5.9e-08 Score=76.83 Aligned_cols=112 Identities=9% Similarity=-0.046 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~-L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.|+.+.++...++++...| ++.++..++.. +.+.+...+|++..+++++++|+++.++.. ..|++++|+..+
T Consensus 53 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 53 TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4777888888888877777 66665555532 333344455777888888888888777766 678888888888
Q ss_pred HHchhhccCCCCcc-hhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 74 EECSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 74 e~~~~~w~~~~~~~-~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++..+ .+|-. ....+..++..+...| ++++|+..|++.|.
T Consensus 132 ~~~l~----~~p~~~~~~a~~~l~~~~~~~g-~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILK----VNLGAQDGEVKKTFMDILSALG-QGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHT----TCTTTTTTHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHH----hCcccChHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence 88776 33321 1234556777777776 78888888876654
No 59
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=2.6e-08 Score=75.26 Aligned_cols=89 Identities=10% Similarity=-0.046 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
...+|..+.+.|++++|++..++|++++|+++.++.. ..|++++|+..++++.. .+|-.+ -.+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~-~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDI-AVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH-HHHHHHHHH
Confidence 4456777899999999999999999999999988877 79999999999999988 444322 355679999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...| ++++|++.|++.+..
T Consensus 95 ~~~~g-~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEH-NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHH-HHHHHHHHHHHHHC-
T ss_pred HHHcC-CHHHHHHHHHHHHHh
Confidence 99997 999999999998875
No 60
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.73 E-value=5.6e-07 Score=82.60 Aligned_cols=112 Identities=7% Similarity=0.049 Sum_probs=83.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.+..++..++..+..+|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666666666666667777788888888888888888888888888888888766665 68888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. + ...|..++..|...| ++++|+++|++.+..
T Consensus 433 ~~~~~~~-~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 433 AARLFQG-T----HLPYLFLGMQHMQLG-NILLANEYLQSSYAL 470 (597)
T ss_dssp HHHTTTT-C----SHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHhCcc-c----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 7763222 1 233445777777876 888888888887754
No 61
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=1.5e-07 Score=91.02 Aligned_cols=112 Identities=10% Similarity=-0.045 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHhhC--------CCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCH
Q 026999 1 MGRPDLCFDIIHQVL--------PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCF 66 (229)
Q Consensus 1 ~G~~~~~~~~~~ral--------p~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~ 66 (229)
.|+.+++++..++++ ..+|++..++..+|..+.+.|+|++|++..+++++++|+++.++.. .+|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 478899999999999 8889999999999999999999999999999999999999888776 79999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+..++++.. .+|-. .-.+..+|.++..+| ++++ ++.|++.+..
T Consensus 484 ~~A~~~~~~al~----l~P~~-~~~~~~lg~~~~~~g-~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 484 DSATKHFTEVLD----TFPGE-LAPKLALAATAELAG-NTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHHHHHHHH----HSTTC-SHHHHHHHHHHHHHT-CCCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCCC-hHHHHHHHHHHHHcC-ChHH-HHHHHHHHHh
Confidence 999999999988 34321 234457999999997 9999 9999998876
No 62
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.73 E-value=7e-08 Score=80.88 Aligned_cols=118 Identities=10% Similarity=0.022 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcc-------hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFM-------YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~-------~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-+...... ....|-.++.++...| ++++|..+|++.+..
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN-RPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT-CHHHHHHHTTCCSHH
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 9977443311000 2346667999999997 999999999877665
No 63
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.73 E-value=7.3e-07 Score=81.83 Aligned_cols=185 Identities=8% Similarity=-0.031 Sum_probs=129.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|.+...+..++.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc--hhhhhhHHHHHHHHhhcCCccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH--PEVYLNALGLLLRVYVRGELDVFG 152 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~--~~~~~Da~sLLwRL~l~G~~v~vg 152 (229)
+....-+. + .-.|..++..+...| ++++|+++|++.+.........+. ...+..-+.++.+ .|
T Consensus 466 ~~~~~~~~-~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g------ 530 (597)
T 2xpi_A 466 SSYALFQY-D----PLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---LK------ 530 (597)
T ss_dssp HHHHHCCC-C----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---TT------
T ss_pred HHHHhCCC-C----hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---hc------
Confidence 99873322 2 234557999999987 999999999998775211000011 1111222222222 22
Q ss_pred ccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 153 NRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 153 ~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++++-...+..-.. ++..+-.=.....++...|+.+.+.+.++.+-+.
T Consensus 531 -~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 -MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 23333333322111 1222233345566788899999888887776654
No 64
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=1.1e-07 Score=67.27 Aligned_cols=97 Identities=8% Similarity=-0.044 Sum_probs=82.3
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCc-chhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSF-MYTH 90 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~-~~~H 90 (229)
.|+++.++..+|..+...|++++|+...+++++++|+++.+... ..|++++|+..++++... +|. ....
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~ 77 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV----IEDEYNKD 77 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----SCCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CcccchHH
Confidence 46677777888889999999999999999999999999887766 799999999999999883 322 0234
Q ss_pred hHHHHHHHHHhC-CCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEG-HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~-gg~~d~Al~~yd~~i~~ 119 (229)
.+..+|.+++.. | ++++|++.+.+.+..
T Consensus 78 ~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEG-KEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSS-CSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHhhc
Confidence 667899999998 8 999999999988876
No 65
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.73 E-value=9.5e-08 Score=72.62 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=80.7
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC--cchhhh
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS--FMYTHN 91 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~--~~~~H~ 91 (229)
+.+.++-.+|-.+...|+|++|++..++||+++|+++.++.. .+|++++|+..+++++..-+...+ ...+..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345567788889999999999999999999999999988776 799999999999999764333221 112335
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+|.++...| ++++|++.|.+.+..
T Consensus 86 ~~~lg~~~~~~~-~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQN-DLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 667999999997 999999999998865
No 66
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=4.6e-08 Score=74.53 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++....+++..+|.++.++..+|.++...|++++|++..++||+++|+++.++.. ..|++++|+..++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 106 ~al~ 109 (126)
T 4gco_A 106 DALQ 109 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9988
No 67
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=7.4e-08 Score=69.70 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=83.0
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.|.++..+..+|..+...|++++|++..+++++++|+++.+... ..|++++|+..+++.... +|. ....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 82 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----DPA-YSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-CHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----Ccc-CHHH
Confidence 45677888899999999999999999999999999999887766 799999999999999873 332 2345
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+..+|.++...| ++++|+..|++.+...
T Consensus 83 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 83 YGRMGLALSSLN-KHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHhcC
Confidence 667999999997 9999999999998873
No 68
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=5.5e-08 Score=73.48 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=74.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++..+|.++.++..+|.++...|++++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 110 ~al~ 113 (121)
T 1hxi_A 110 AWLL 113 (121)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9987
No 69
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.1e-06 Score=78.41 Aligned_cols=189 Identities=10% Similarity=0.036 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4788889999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+.....+. + ...+..+|..++..| ++++|+..|++.+...- .. ........+...+-++.+.-.. .| +
T Consensus 363 ~~~~~~~~-~----~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~--~~-~ 430 (514)
T 2gw1_A 363 EAKRKFPE-A----PEVPNFFAEILTDKN-DFDKALKQYDLAIELEN--KL-DGIYVGIAPLVGKATLLTRNPT--VE-N 430 (514)
T ss_dssp HHHHHSTT-C----SHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH--TS-SSCSSCSHHHHHHHHHHHTSCC--TT-H
T ss_pred HHHHHccc-C----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhh--cc-chHHHHHHHHHHHHHHHhhhhh--cC-C
Confidence 99874333 1 234567999999997 99999999998877532 11 1110011122222222222000 01 2
Q ss_pred HHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 155 LKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 155 W~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++.-...+..-.. .+..+..-.....++...|+.+.+.+.++..-+.
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3333333322111 2222222334566777889988887777666554
No 70
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=2.1e-07 Score=67.95 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
..|.....+..+|..+...|++++|++..+++++++|+++.++.. .+|++++|+..++++... +|. ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~-~~~ 85 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----EPT-FIK 85 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----CTT-CHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC-chH
Confidence 456778899999999999999999999999999999999887776 799999999999999883 322 234
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+..+|.+++..| ++++|++.|++.+..
T Consensus 86 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMK-DYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 5667999999997 999999999988765
No 71
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.70 E-value=1.6e-07 Score=77.44 Aligned_cols=112 Identities=7% Similarity=0.055 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh----HHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS----QHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA----~Ha------~~Gr~~egi 70 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++ .|+++.. +.. ..|++++|+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 48999999999999999999999999999999999999999999999999 6655544 222 799999999
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..++++...-+. ....+-.+|.+++..| ++++|+..|++.+..
T Consensus 95 ~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 95 QQYQAAVDRDTT-----RLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHSTT-----CTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCS
T ss_pred HHHHHHHhcCcc-----cHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhc
Confidence 999999883322 1235567999999997 999999999998875
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.69 E-value=1.6e-07 Score=78.20 Aligned_cols=116 Identities=10% Similarity=0.007 Sum_probs=97.1
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHH--------hCCHHHHHHHHHHHHhhCCCChhhH----------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLE--------LGQMSDAEEAAKKGLKINKHDCWSQ---------- 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e--------~g~~d~Ae~~a~rAL~LnP~dawA~---------- 59 (229)
+|+.+.++...++++..+|+ .+.++..+|.++.. .|++++|++..+++++++|+++.+.
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 58899999999999987664 56789999999999 9999999999999999999997765
Q ss_pred -------HH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhC----------CCCHHHHHHHHHhh
Q 026999 60 -------HA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG----------HSPMRKVLEIYDNH 116 (229)
Q Consensus 60 -------Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~----------gg~~d~Al~~yd~~ 116 (229)
.. .+|++++|+..+++.....+. ++. ..-.+..+|.+|..+ | ++++|+..|++.
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~-~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~ 221 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD-TPW-ADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STT-HHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-Cch-HHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHH
Confidence 22 689999999999999886665 322 234556788888866 6 899999999998
Q ss_pred chh
Q 026999 117 IWK 119 (229)
Q Consensus 117 i~~ 119 (229)
+..
T Consensus 222 ~~~ 224 (261)
T 3qky_A 222 LQI 224 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 73
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=1.5e-07 Score=74.07 Aligned_cols=119 Identities=9% Similarity=-0.083 Sum_probs=90.6
Q ss_pred CCChhHHHHHHHhhCC------CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh---CCCCh----hhHHH------
Q 026999 1 MGRPDLCFDIIHQVLP------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI---NKHDC----WSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp------~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L---nP~da----wA~Ha------ 61 (229)
.|+.+.++....+++. ..+....++..+|..+...|++++|++..++|+++ .|+++ .++..
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 4788888888888888 34456678889999999999999999999999999 55444 22222
Q ss_pred hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..|++++|+..++++.......+. ......+..+|..++..| ++++|++.|++.+.-.
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK-NLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 689999999999998765444332 222345567899999987 9999999998877663
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.69 E-value=8.1e-07 Score=77.32 Aligned_cols=118 Identities=10% Similarity=-0.070 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHhhCCCCCCc-h----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH------HH------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE-D----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ------HA------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~-~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~------Ha------~~ 63 (229)
.|+.+.++...++++...|.+ + .++..+|..+...|++++|++..++|+++.|...... .. .+
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 488999999999988866543 2 3678889999999999999999999999988664331 11 79
Q ss_pred CCHHHHHHHHHHchhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~---~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++++..++++.......+. ......+..+|..++..| ++++|++.|++.+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEV 164 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 9999999999999775543221 112334456899999997 999999999998865
No 75
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.68 E-value=4.1e-08 Score=84.58 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=60.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++....++++..+|+++.++..+|-++...|++++|++..+++++++|+..+.... .+|+.+++++.+++
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 445555555555555555555555555555555555555555555555555533322221 34444445555555
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...-+. . .-.+-.+|..++..| ++++|++.|.+.+..
T Consensus 211 al~~~P~---~--~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 211 QVAENPE---D--AALATQLALQLHQVG-RNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHCTT---C--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCc---c--HHHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 5442221 1 123346888888876 888888888888776
No 76
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.68 E-value=3.6e-07 Score=79.12 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~~Gr~~egi~~ 72 (229)
.|+.++++....+ |.+..++..++.++...|++++|++..+++++++|++....-+ ..|++++|+..
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3777888888777 6777888889999999999999999999999999998744332 24899999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.....+. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 189 ~~~~l~~~p~-----~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 189 FQEMADKCSP-----TLLLLNGQAACHMAQG-RWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHSCC-----CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999884332 1345567999999997 999999999998876
No 77
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.9e-07 Score=75.53 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHhhCCCCCCc-------hhHHHHHHHHHHHhCCHHHHHHHHHHHHh-----------------------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE-------DFIFGILAFSLLELGQMSDAEEAAKKGLK----------------------- 50 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~-------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~----------------------- 50 (229)
+|+.+.++....+++...|.+ +.++..+|..+...|++++|.+..++++.
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 588999999999999877655 68999999999999999999999999999
Q ss_pred ---hCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 51 ---INKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 51 ---LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+++.++.. ..|++++|+..++++....+. + ...+..+|.+++..| ++++|+..|++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-D----ARGYSNRAAALAKLM-SFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-c----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 55555555554 688888888888888773332 1 234556888888886 888888888887765
No 78
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.66 E-value=3.7e-08 Score=73.08 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHhhCCC---CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~---~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+|+.+.++...++++.. +|.++.++..+|.++...|+|++|++..+++++++|+++.++.. ..|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 48889999999999998 68889999999999999999999999999999999999988777 7999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
.++++...-+.
T Consensus 83 ~~~~al~~~p~ 93 (117)
T 3k9i_A 83 LLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 99999874443
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=1e-07 Score=72.93 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=75.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++..+|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988776 7999999999999
Q ss_pred Hchhhcc
Q 026999 75 ECSSTWS 81 (229)
Q Consensus 75 ~~~~~w~ 81 (229)
++...-+
T Consensus 111 ~al~~~p 117 (142)
T 2xcb_A 111 SARALAA 117 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 9987433
No 80
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=2.6e-07 Score=66.79 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+.+++
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999887766 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
++...-+. + ...+..++.++...| ++
T Consensus 105 ~~~~~~p~-~----~~~~~~l~~~~~~~~-~~ 130 (131)
T 2vyi_A 105 KALELDPD-N----ETYKSNLKIAELKLR-EA 130 (131)
T ss_dssp HHHHHSTT-C----HHHHHHHHHHHHHHT-TC
T ss_pred HHHhcCcc-c----hHHHHHHHHHHHHHh-cC
Confidence 99884322 1 234456888888775 54
No 81
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=2.2e-07 Score=67.86 Aligned_cols=98 Identities=8% Similarity=0.015 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+.+++
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCC
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGH 103 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~g 103 (229)
+.... +|. ..-.+-.++.+++..|
T Consensus 109 ~~~~~----~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 109 KALDL----DSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHH----CGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHh----CCC-chHHHHHHHHHHHHhc
Confidence 99873 322 1123334666666543
No 82
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=1.3e-07 Score=73.78 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=76.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+++.....+++...|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
++...-+.
T Consensus 114 ~al~~~p~ 121 (148)
T 2vgx_A 114 LAQELIAN 121 (148)
T ss_dssp HHHHHHTT
T ss_pred HHHHHCcC
Confidence 99874443
No 83
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.62 E-value=2.3e-06 Score=75.45 Aligned_cols=184 Identities=8% Similarity=-0.030 Sum_probs=123.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999988777 79999999999999
Q ss_pred chhhccCCCCcchhhh----------HHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 76 CSSTWSSCSSFMYTHN----------WWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~----------~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
+...-+. ++ ..+. .--++..++..| ++++|++.|++.+... ++ .......+...+-.+...
T Consensus 237 ~~~~~p~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 237 CLKLDQD-HK--RCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTE--PS---IAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHCTT-CH--HHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--CS---SHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCC-hH--HHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHHHHHHH
Confidence 9873332 11 1111 011278888887 9999999999988752 22 111112222222222111
Q ss_pred CCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 146 GELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 146 G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
-.++++-......-.. .+..+-.=...+.++...|+.+.+.+.++..-+
T Consensus 308 ------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 308 ------DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp ------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1234444444433211 122111222235666778888877776665544
No 84
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.62 E-value=1.1e-06 Score=64.58 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh---HHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA---~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
.+...|..+...|+|++|++..+++++.+|++++. +.. .+|++++|+..+++.....+. ++. ..-.+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~-~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDK-AAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STT-HHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-Ccc-cHHHHHH
Confidence 35567888999999999999999999999999953 332 799999999999999885554 222 2344567
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.++...| ++++|+..|++.+..
T Consensus 82 la~~~~~~g-~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEG-KNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 999999997 999999999988876
No 85
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.4e-06 Score=62.20 Aligned_cols=92 Identities=13% Similarity=0.232 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
+..+..+|..+...|++++|++..++++.++|+++.+... ..|++++|+.++++....-+. ....+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHH
Confidence 6778889999999999999999999999999999887766 789999999999999873222 12345679
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|..+...| ++++|+..|++.+..
T Consensus 84 a~~~~~~~-~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 84 GNAYYKQG-DYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHh
Confidence 99999997 999999999988765
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=1.6e-07 Score=73.21 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH-HHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV-QFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi-~~l 73 (229)
+|+.+.+.....+++..+|+++.++..+|.++...|++++|+...++|++++|+++.++.. .+|+.++++ .|+
T Consensus 44 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999998887 689988766 568
Q ss_pred HHchh
Q 026999 74 EECSS 78 (229)
Q Consensus 74 e~~~~ 78 (229)
+++..
T Consensus 124 ~~al~ 128 (150)
T 4ga2_A 124 ERAAK 128 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.61 E-value=1.3e-07 Score=77.27 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L--------nP~dawA~Ha--- 61 (229)
+|+.+.++....+++.. .|....++..+|.++...|++++|++..++++++ +|+.+.++..
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 48889999999999876 4667789999999999999999999999999999 6766666665
Q ss_pred ---hhCCHHHHHHHHHHchhhccC---------------------------------------------CCCcchhhhHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW 93 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~---------------------------------------------~~~~~~~H~~W 93 (229)
.+|++++|+..++++...... .++. ....+.
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 256 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-VNTTLR 256 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-HHHHHH
Confidence 799999999999999764221 1111 234677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.+|...| ++++|+..|++.+..
T Consensus 257 ~la~~~~~~g-~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 257 SLGALYRRQG-KLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 8999999997 999999999887753
No 88
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2e-07 Score=69.18 Aligned_cols=78 Identities=8% Similarity=0.028 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|+|++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988776 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 97 ~al~ 100 (126)
T 3upv_A 97 AART 100 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 89
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=6.1e-07 Score=64.94 Aligned_cols=98 Identities=6% Similarity=0.075 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcc--hhhhH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFM--YTHNW 92 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~--~~H~~ 92 (229)
.+..+..+|..+...|++++|+...++++.++|+++.+... ..|++++++.+++++...-+..++.. ....+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45667788889999999999999999999999999887766 79999999999999977444322111 14567
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+|.++...| ++++|++.|++.+..
T Consensus 83 ~~la~~~~~~~-~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEE-KYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 78999999997 999999999988875
No 90
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=2.3e-07 Score=81.96 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=96.3
Q ss_pred CCChhHHHHHHHhhCCCCCCc---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---------------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---- 61 (229)
.|+.+.++....+++...|.+ ..++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 378899999999999998887 5899999999999999999999999999999999998877
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-HHHHHhhchh
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 119 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~A-l~~yd~~i~~ 119 (229)
..|++++|+..++++.. .+|-. .-.+..++.++...| +++++ ..+|.+.+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~----l~P~~-~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQ----LYPNN-KAAKTQLAVCQQRIR-RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCSSC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH----HCCCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 79999999999999988 33332 235567999999887 99998 5577666544
No 91
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.59 E-value=2.4e-06 Score=70.88 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=95.3
Q ss_pred CCChhHHHHHHHhhCC--------CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp--------~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln--------P~dawA~Ha--- 61 (229)
.|+.+.++....+++. ..+....++..+|..+...|++++|++..++++++. |..+.+...
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4888999999999988 356778899999999999999999999999999994 554555544
Q ss_pred ---hhCCHHHHHHHHHHchhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~---~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++....... ++......+..+|.+++..| ++++|++.|++.+..
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 7999999999999998754221 11123456667999999997 999999999998875
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=2e-07 Score=80.24 Aligned_cols=115 Identities=8% Similarity=-0.020 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++...++++...|+..+.....+..+.+.++.++|++..+++++++|+++.++.. .+|++++|++.++
T Consensus 164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4899999999999999999877888788888999999999999999999999999998887 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+.-+. +.....+-.++..+...| +.++|+..|++.+..
T Consensus 244 ~~l~~~p~---~~~~~a~~~l~~~~~~~g-~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 244 GHLRXDLT---AADGQTRXTFQEILAALG-TGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHCTT---GGGGHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcccc---cccchHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Confidence 99883322 212344557888888886 999999999887764
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=7.9e-07 Score=63.15 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
+..+..+|..+...|++++|+...++++.++|+++.++.. ..|++++|+..+++.... +|. ....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----KPD-WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----Ccc-cHHHHHHH
Confidence 4566778888999999999999999999999999887765 799999999999999873 322 23455679
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|.++...| ++++|++.|++.+..
T Consensus 79 a~~~~~~~-~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLN-RFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHc
Confidence 99999997 999999999888765
No 94
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=7.4e-08 Score=89.65 Aligned_cols=108 Identities=10% Similarity=0.080 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+++....++++...|.++.++..+|.++.+.|+|++|++..++|++++|+++.++.. .+|++++|+..++
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHH--HHhCCCCHHHHHHHHH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIYD 114 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~--~l~~gg~~d~Al~~yd 114 (229)
++...-+. + .. .+-.++.+ ++..| ++++|++.|+
T Consensus 99 ~al~~~p~-~--~~--~~~~l~~~~~~~~~g-~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKVKPH-D--KD--AKMKYQECNKIVKQK-AFERAIAGDE 134 (477)
T ss_dssp HHHHHSTT-C--TT--HHHHHHHHHHHHHHH-HHCCC-----
T ss_pred HHHHhCCC-C--HH--HHHHHHHHHHHHHHH-HHHHHhcccc
Confidence 99874333 1 12 23346666 77876 9999999998
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.56 E-value=6.8e-07 Score=73.52 Aligned_cols=116 Identities=9% Similarity=0.022 Sum_probs=94.3
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------h--------
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------H-------- 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~-------- 62 (229)
|+.+++....++++...|.++ .++..+|.++...|+|++|++..+++++++|+++.+.-+ +
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 888999999999997777654 578899999999999999999999999999999874333 1
Q ss_pred -----------hCCHHHHHHHHHHchhhccCCCCcchh-------------hhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 63 -----------DCCFKEAVQFMEECSSTWSSCSSFMYT-------------HNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 63 -----------~Gr~~egi~~le~~~~~w~~~~~~~~~-------------H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+|++++|+..+++.+...+... .... -....+|.+++..| ++++|+..|++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~-~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ-YTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNRVEGMLR 175 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHH
Confidence 5789999999999998776633 2111 01145788899987 99999999999887
Q ss_pred h
Q 026999 119 K 119 (229)
Q Consensus 119 ~ 119 (229)
.
T Consensus 176 ~ 176 (225)
T 2yhc_A 176 D 176 (225)
T ss_dssp H
T ss_pred H
Confidence 6
No 96
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=9.9e-07 Score=75.94 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=89.1
Q ss_pred hHHHHHHHhhCC-CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-hHHH------hhCCHHHHHHHHHHc
Q 026999 5 DLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 5 ~~~~~~~~ralp-~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-A~Ha------~~Gr~~egi~~le~~ 76 (229)
++++...+|++. ..|++..++..++..++..|++++|++..++||+++|+++. ++.. .+|++++++..++++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999 69999999999999999999999999999999999999875 4443 689999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHh---CCCCHHHHHHHHHhhchh
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~---~gg~~d~Al~~yd~~i~~ 119 (229)
.. .+|. ..+.| ++...++ .| ++++|+++|++.+..
T Consensus 161 ~~----~~p~-~~~~~--~~~a~~~~~~~~-~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 161 RE----DART-RHHVY--VTAALMEYYCSK-DKSVAFKIFELGLKK 198 (308)
T ss_dssp HT----STTC-CTHHH--HHHHHHHHHTSC-CHHHHHHHHHHHHHH
T ss_pred Hh----cCCC-CHHHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 87 3432 23443 3444443 55 999999999999876
No 97
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.1e-07 Score=67.25 Aligned_cols=97 Identities=6% Similarity=-0.069 Sum_probs=81.8
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHHHHHHHHHchhhccCCCCcc
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFM 87 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~ 87 (229)
..+.+...+...|..+...|+|++|++..+++++++|++ +.++.. ..|++++++..+++.... +|.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~- 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----DGG- 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TSC-
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----Ccc-
Confidence 356778889999999999999999999999999999997 555554 799999999999999873 332
Q ss_pred hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 88 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 88 ~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....+..+|.++...| ++++|+..|++.+..
T Consensus 98 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLG-RLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 1345567999999997 999999999998876
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=3.9e-07 Score=70.94 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++..+|.++.++..+|.++...|+|++|++..++||+++|+++.++.. ..|++++|+..++
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
++...-+.
T Consensus 104 ~al~~~p~ 111 (164)
T 3sz7_A 104 KGIEAEGN 111 (164)
T ss_dssp HHHHHHSS
T ss_pred HHHHhCCC
Confidence 99884444
No 99
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=3e-07 Score=68.39 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=90.3
Q ss_pred CCChhHHHHHHHhhCCCCCCc------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------hhhHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d------awA~Ha------~ 62 (229)
.|+.+.++....+++...+.. ..++..+|..+...|++++|++..++++++.|+. +.+... .
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 478888888888888764422 2578889999999999999999999999987664 223332 7
Q ss_pred hCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+..++++.......+. ......+..+|..++..| ++++|++.|++.+.-
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 89999999999998765544332 223456667999999987 999999999887765
No 100
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.53 E-value=8.1e-07 Score=76.48 Aligned_cols=113 Identities=5% Similarity=-0.075 Sum_probs=95.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---h----hCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---H----DCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~-~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~----~Gr~~egi~~ 72 (229)
.|+.+.++..-++++...|.++. ++..++-.+...|++++|++..++|++++|++...... + .|++++|+..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48899999999999999998875 78888888999999999999999999999998665544 2 6999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++....+. ...+|-.++.++...| ++++|+.+|++.+..
T Consensus 192 ~~~al~~~p~-----~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 192 FELGLKKYGD-----IPEYVLAYIDYLSHLN-EDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCC-----cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 9999884333 1345567888888887 999999999998874
No 101
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.52 E-value=6e-07 Score=73.20 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=77.1
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------C-----hhhHHH------hhCCHHHHHHHHHHchhhccC
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------D-----CWSQHA------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~-------d-----awA~Ha------~~Gr~~egi~~le~~~~~w~~ 82 (229)
.++.+...|..+...|+|++|++..++||+++|+ + ++++.. ..||++|++...++++..|+.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3466777888899999999999999999999999 3 234444 799999999999999983211
Q ss_pred C---CCcchhhhH----HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 83 C---SSFMYTHNW----WHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 83 ~---~~~~~~H~~----WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
- +|- ..-.| ...|.++..+| ++++|+..|++.|.-.
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 1 432 22344 58999999997 9999999999988763
No 102
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.52 E-value=3e-06 Score=73.99 Aligned_cols=199 Identities=12% Similarity=0.026 Sum_probs=124.5
Q ss_pred CCChhHHHHHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------hhC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------HDC 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~~G 64 (229)
.|+.+.++...++++...|.++ .++..+|..+...|++++|++..++++++ +|..+.++.. ..|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4889999999999999888776 57889999999999999999999999999 5666666555 799
Q ss_pred CHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCC-----------------HHHHHHHHHhhchhhccCCCC
Q 026999 65 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP-----------------MRKVLEIYDNHIWKELEKPDA 126 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~-----------------~d~Al~~yd~~i~~~~~~~~~ 126 (229)
++++|+..++++.......+. ......+..+|..|...| + +++|++.|.+.+.-... .+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-~~- 217 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-LG- 217 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HT-
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-cC-
Confidence 999999999998775433221 123446678999999987 9 99999999887654211 10
Q ss_pred CchhhhhhHHHHHHHHhhcCCccc-ccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 026999 127 VHPEVYLNALGLLLRVYVRGELDV-FGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 203 (229)
Q Consensus 127 ~~~~~~~Da~sLLwRL~l~G~~v~-vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 203 (229)
.......+...+-++.+.-.+.+ --.-.+..................-.....++...|+.+.+.+.++.......
T Consensus 218 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 218 -DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 11112222222222222211100 00122222222222111122122333446677788888887777765554443
No 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.52 E-value=7.9e-07 Score=79.36 Aligned_cols=118 Identities=8% Similarity=-0.058 Sum_probs=84.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4777788888888887777777777788888888888888888888888888887766655 6788888888888
Q ss_pred HchhhccCCCCc-chhhhHHHHHHHHHh---CCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSF-MYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~-~~~H~~WHlAL~~l~---~gg~~d~Al~~yd~~i~~ 119 (229)
++....+..+.. .....+..+|.+++. .| ++++|+..|++.+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHh
Confidence 776644432211 001245567777777 76 788888888777654
No 104
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=9.3e-07 Score=63.21 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|+...+++++++|+++.++.. ..|++++|+.+++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999877665 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+.... +|.. .-.+..++..+..
T Consensus 102 ~~~~~----~~~~-~~~~~~l~~~~~~ 123 (125)
T 1na0_A 102 KALEL----DPNN-AEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHH----CTTC-HHHHHHHHHHHHH
T ss_pred HHHHh----CCCc-HHHHHHHHHHHHh
Confidence 99873 3321 2233456666554
No 105
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=1.1e-06 Score=75.45 Aligned_cols=95 Identities=7% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 19 ~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
|.++..+..+|..+...|+|++|++..++|++++|+++.++.. ..|++++|+..++++.. .+|. ....+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~-~~~~~ 75 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQ-SVKAH 75 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTT-CHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC-CHHHH
Confidence 4566788889999999999999999999999999999988877 79999999999999988 3432 22345
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+|..++.+| ++++|++.|.+.+..
T Consensus 76 ~~lg~~~~~~g-~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 76 FFLGQCQLEME-SYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 57999999997 999999999988765
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=1.6e-07 Score=82.92 Aligned_cols=101 Identities=10% Similarity=-0.061 Sum_probs=83.8
Q ss_pred hhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------hhhHHH------hhCCHHHHHH
Q 026999 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 13 ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---------------awA~Ha------~~Gr~~egi~ 71 (229)
+++...|.++.++..+|..+...|+|++|++..++|++++|++ +.++.. .+|++++|+.
T Consensus 138 ~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333456677899999999999999999999999999999999 455554 7999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++++.. +|- ....+..+|.+|+.+| ++++|+..|++.+..
T Consensus 218 ~~~~al~~----~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 218 SCNKALEL----DSN-NEKGLSRRGEAHLAVN-DFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 99999983 332 1234557999999997 999999999998876
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=9.9e-07 Score=72.52 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHH------------------hCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLE------------------LGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e------------------~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
+|+.+.++...++++..+|+++ +++.++|.++.+ .|++++|.+..+++++..|+++.+.
T Consensus 54 ~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 54 NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 4889999999999998888766 478888888876 5799999999999999999999875
Q ss_pred HH-----------------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 60 HA-----------------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 60 Ha-----------------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
-+ .+|++++|+..+++.+...+. ++. ..-.+-.++.++..+| ++++|++.++..
T Consensus 134 ~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~-~~~a~~~l~~~~~~~g-~~~~A~~~~~~l 210 (225)
T 2yhc_A 134 DATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQA-TRDALPLMENAYRQMQ-MNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHH-HHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCc-cHHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence 32 689999999999999987766 332 2234557999999997 999999999765
Q ss_pred chh
Q 026999 117 IWK 119 (229)
Q Consensus 117 i~~ 119 (229)
+..
T Consensus 211 ~~~ 213 (225)
T 2yhc_A 211 AAN 213 (225)
T ss_dssp HHC
T ss_pred Hhh
Confidence 543
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=8e-07 Score=69.89 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=89.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~~Gr~~eg 69 (229)
|+...+....+.+....+..+.++..+|..+...|++++|++..++|+++ .|..+.++.. .+|+++++
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77788887333333323367889999999999999999999999999994 4444555544 79999999
Q ss_pred HHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 70 VQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 70 i~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..++++.......+ +......+..+|..++..| ++++|++.|++.+..
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 999999987654433 1134556778999999997 999999999887754
No 109
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.48 E-value=6.3e-07 Score=76.87 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=63.1
Q ss_pred CChhHHHHHHHhhCCCC------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------hh
Q 026999 2 GRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------HD 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------~~ 63 (229)
|+.+++.....+++... +..+.++..+|.++...|++++|+...++|+++.|... .++.. .+
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 55566666666655542 12366666666666666666666666666666665432 12221 23
Q ss_pred -CCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 -CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 -Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..++++....+..+.. .....+-.+|.+++.+| +|++|+..|++.+..
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKS 187 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 66666666666665544432211 01122334566666664 666666666666654
No 110
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=6.7e-07 Score=66.41 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|+...+++++++|+++.++.. ..|++++|+..++
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
++...-+.
T Consensus 102 ~a~~~~p~ 109 (137)
T 3q49_B 102 RAYSLAKE 109 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHChh
Confidence 99874333
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=1.7e-06 Score=65.57 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
.+..+..+|..+...|++++|.+..+++++++|+++.++.. ..|++++|+..++++....+. ....+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHH
Confidence 44677888999999999999999999999999999887776 799999999999999884332 1245567
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.++...| ++++|+..|++.+..
T Consensus 87 ~a~~~~~~~-~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALG-KFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 999999997 999999999998875
No 112
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=9.3e-07 Score=62.34 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=74.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--ChhhHHH------hh-CCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHA------HD-CCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~--dawA~Ha------~~-Gr~~egi~ 71 (229)
.|+.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+ ++.++.. .. |++++|+.
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999 8877666 68 99999999
Q ss_pred HHHHchhhcc
Q 026999 72 FMEECSSTWS 81 (229)
Q Consensus 72 ~le~~~~~w~ 81 (229)
.+++....-+
T Consensus 99 ~~~~~~~~~p 108 (112)
T 2kck_A 99 AEARAKLEHH 108 (112)
T ss_dssp HHHHHGGGCC
T ss_pred HHHHHhhccc
Confidence 9999987443
No 113
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.48 E-value=2.7e-05 Score=64.73 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChhhHHH------h----hCCH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHA------H----DCCF 66 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~ 66 (229)
.|+.+.+....++++. ++++.++..+|..+.. .|++++|.+..++|++++ ++.+... . .|++
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH
Confidence 3677888888888877 6677788888888888 889999999999998886 5555554 4 8889
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
++|+.+++++.. .+. ...+-.+|.+|.. .+ ++++|++.|++.+..
T Consensus 95 ~~A~~~~~~a~~----~~~---~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 95 NKALQYYSKACD----LKY---AEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHHHHHH----TTC---HHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----cCC---ccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhc
Confidence 999999988877 231 1233458888887 76 899999999887764
No 114
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.47 E-value=3.2e-06 Score=74.26 Aligned_cols=193 Identities=11% Similarity=0.141 Sum_probs=121.8
Q ss_pred CCChhHHHHHHHhhCCCCC-------CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYNQ-------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~-------~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------ 61 (229)
+|+.+.++....+++...+ ....++..+|.++...|+|++|++..++|+++.|+.. .+.+.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5888899999999887533 2346889999999999999999999999999977554 23333
Q ss_pred hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 140 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLw 140 (229)
.+|++++|+..++++.......+. ......+-.+|..++..| ++++|+..|++.+.-.. +.+ ..........|-
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~-~~~---~~~~~~~~~~l~ 310 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQ-KAG---DVIYLSEFEFLK 310 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-HHT---CHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-HcC---CHHHHHHHHHHH
Confidence 799999999999999874443332 123456668999999997 99999999999887532 111 111112223333
Q ss_pred HHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 141 RVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 141 RL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.+...-.+ .+..+...+........+...-.-......+...|+.+.+.......-..
T Consensus 311 ~~~~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 311 SLYLSGPD---EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCc---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33332211 02244444444433222221112223355566677776666555544443
No 115
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.46 E-value=5.3e-06 Score=68.73 Aligned_cols=118 Identities=10% Similarity=0.131 Sum_probs=95.1
Q ss_pred CCChhHHHHHHHhhCCCCCCc----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------hhC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------HDC 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~----~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~~G 64 (229)
.|+.+.++...++++...|.+ ..++..+|..+...|++++|++..++++++ .|..+.++.. ..|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 489999999999999988877 467889999999999999999999999998 4444544444 799
Q ss_pred CHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHhhchh
Q 026999 65 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWK 119 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~--------------------~d~Al~~yd~~i~~ 119 (229)
++++|+..++++....+..+. ......+..++..+...| + +++|++.|++.+.-
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998765544332 223446778999999987 9 99999999887654
No 116
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.46 E-value=1.3e-05 Score=69.57 Aligned_cols=118 Identities=8% Similarity=0.014 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHhhCCCC--------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-----hHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~--------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-----A~Ha------ 61 (229)
.|+.++++...++++... |....++.++|.++.+.|++++|++..++++++.|.... ++..
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 488889998888888743 345678888999999999999999999999999986422 1111
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH--HHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA--LCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA--L~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++++..++++.......+...........+ ..++..| ++++|...+++.+.+
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKP 244 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCC
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 69999999999999976544422111111111123 3367886 999999999988765
No 117
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.45 E-value=1.6e-06 Score=78.17 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=98.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.+... ..|++++|+..++
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999987777 7999999999999
Q ss_pred HchhhccCCCCcch-hhhHHHHHHHHHhC----------CCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMY-THNWWHVALCYLEG----------HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~-~H~~WHlAL~~l~~----------gg~~d~Al~~yd~~i~~ 119 (229)
++...-+....... .-.+...|.++... | ++++|+..|++.+..
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHHh
Confidence 99765444222211 11234567777776 7 999999999998876
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.43 E-value=4e-07 Score=75.65 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHhhCCCC--------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~--------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L--------nP~dawA~Ha--- 61 (229)
+|+.+.++....+++... +....++..+|..+...|++++|++..++++++ +|..+.+...
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 478888999888888653 567788999999999999999999999999999 6666655554
Q ss_pred ---hhCCHHHHHHHHHHchhhccC---------------------------------------------CCCcchhhhHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW 93 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~---------------------------------------------~~~~~~~H~~W 93 (229)
.+|++++|+.+++++...... .+|. ....+.
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 282 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLK 282 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHH
Confidence 799999999999999763211 1121 234667
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.+|...| ++++|++.|++.+.-
T Consensus 283 ~la~~~~~~g-~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 283 NLGALYRRQG-KFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 8999999997 999999999988765
No 119
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=3e-06 Score=60.03 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....++++...|.++.++..+|..+...|++++|.+..+++++++|+++.++.. ..|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999877666 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
+...
T Consensus 97 ~~~~ 100 (118)
T 1elw_A 97 EGLK 100 (118)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9987
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.40 E-value=3.8e-06 Score=60.34 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
++..+|..+...|++++|++..+++++++|+++.+... ..|++++++.++++.... +|. ....+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPR-SAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCC-chHHHHHHHH
Confidence 45677888999999999999999999999999887665 789999999999999873 222 1234557899
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+...| ++++|++.|++.+..
T Consensus 78 ~~~~~~-~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 78 AYYKQG-DYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHh
Confidence 999987 999999999887765
No 121
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=7.1e-06 Score=71.60 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=124.5
Q ss_pred CCChhHHHHHHHhhCCC------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~ 62 (229)
+|+.+.++....+++.. .+....++..+|..+...|++++|++..++++++ .|..+.++.. .
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 37888889988888875 4567789999999999999999999999999999 5555555554 6
Q ss_pred hCC-----------------HHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCC
Q 026999 63 DCC-----------------FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKP 124 (229)
Q Consensus 63 ~Gr-----------------~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~ 124 (229)
.|+ +++++.+++++.......+. ......+..+|..++..| ++++|++.|++.+..... .
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-~ 256 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIARE-F 256 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH-H
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHh-c
Confidence 899 99999999988664433221 223446778999999997 999999999998765321 1
Q ss_pred CCCchhhhhhHHHHHHHHhhcCCcccc-cccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 026999 125 DAVHPEVYLNALGLLLRVYVRGELDVF-GNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 203 (229)
Q Consensus 125 ~~~~~~~~~Da~sLLwRL~l~G~~v~v-g~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 203 (229)
........+...+-++.+.-.+.+- -...+..................-.....++...|+.+.+.+.++.......
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 --GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111122232223222222111000 0112222222221111112122333445667788998888777776655543
No 122
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.38 E-value=5.9e-05 Score=62.67 Aligned_cols=171 Identities=12% Similarity=-0.022 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChhhHHH------h----hCCH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHA------H----DCCF 66 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~ 66 (229)
.|+.+.++...++++... ++.++..+|..+.. .+++++|++..++|++++ ++.++.. . .|++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence 478889999999998774 78888899999999 999999999999999985 6666555 4 8999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHH
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 142 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL 142 (229)
++|+.+++++.. .++. ..+..++..+.. .+ ++++|++.|++.+... .. ++...|-.+
T Consensus 131 ~~A~~~~~~a~~----~~~~---~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~-------~~----~a~~~lg~~ 191 (273)
T 1ouv_A 131 KKAVEYFTKACD----LNDG---DGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK-------DS----PGCFNAGNM 191 (273)
T ss_dssp HHHHHHHHHHHH----TTCH---HHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT-------CH----HHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCcH---HHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC-------CH----HHHHHHHHH
Confidence 999999999988 3422 233468999887 76 9999999999887652 12 344444455
Q ss_pred hhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhc----CCCcHHHHHHHHH
Q 026999 143 YVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALAN----TGEVSKAEDLLKG 197 (229)
Q Consensus 143 ~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~----ag~~~~~~~ll~~ 197 (229)
...|..+ ..+.+.-......-..... +-.-......+.. .++.+.+.+.++.
T Consensus 192 ~~~g~~~--~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 192 YHHGEGA--TKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHTCSS--CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHcCCCC--CccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 5556542 4456665555554332221 2222333444444 5666666555443
No 123
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.36 E-value=2e-06 Score=62.94 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=55.5
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.++...++++..+|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677788888888888888888888888889999998888988888887665544 45566666655555544
No 124
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=1.7e-06 Score=69.27 Aligned_cols=109 Identities=16% Similarity=0.012 Sum_probs=84.6
Q ss_pred CCChhHHHHHHHhhCCCCCCch----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
.|+.+.+.....+++...|.++ .++..+|.++...|+|++|+..++++++++|+++.++..
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4788999999999998887776 889999999999999999999999999999999988777
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH-HHHHh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDN 115 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al-~~yd~ 115 (229)
..|++++|+.+++++... +|.. .-.+-.++.++...+ +++++. ..|..
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~----~p~~-~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 182 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASL----NPNN-LDIRNSYELCVNKLK-EARKKDKLTFGG 182 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH----STTC-HHHHHHHHHHHHHHH-HHHC--------
T ss_pred HHHHcccHHHHHHHHHHHHHH----CCCc-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 799999999999999873 3321 233445777777765 677666 34433
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=4.2e-07 Score=72.90 Aligned_cols=93 Identities=8% Similarity=0.001 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----------------hhHHH------hhCCHHHHHHHHHHchh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da----------------wA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
....+...|..+...|+|++|++..++|+++.|+++ .++.. ..|++++|+..++++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445777888899999999999999999999999987 45444 79999999999999988
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 79 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 79 ~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. +|. ..-.+..+|.+++.+| ++++|++.|.+.+..
T Consensus 117 ~----~p~-~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 117 I----DKN-NVKALYKLGVANMYFG-FLEEAKENLYKAASL 151 (198)
T ss_dssp H----STT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred h----Ccc-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 3 332 1234557999999997 999999999998876
No 126
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.34 E-value=1.5e-05 Score=64.85 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH------------------H----hhCCHHHHHHHHHHchhhc
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH------------------A----HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H------------------a----~~Gr~~egi~~le~~~~~w 80 (229)
-.+-..|..+...|+|++|++..+++++++|+++.++. + ..|++++|+..++++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 34556788899999999999999999999999875542 2 69999999999999988
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|- ..-.+..+|.+++..| ++++|+..|++.+..
T Consensus 83 --~~p~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 --KAPN-NVDCLEACAEMQVCRG-QEKDALRMYEKILQL 117 (208)
T ss_dssp --HCTT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred --HCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 3332 1234557999999997 999999999999886
No 127
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.34 E-value=1.7e-05 Score=68.28 Aligned_cols=118 Identities=10% Similarity=0.110 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCChhhHHH------hhC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKIN------KHDCWSQHA------HDC 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln------P~dawA~Ha------~~G 64 (229)
.|+.+.+....++++...|.++ .++..+|..+...|++++|+...++|+++. |..+.++.. ..|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 4889999999999999888774 578889999999999999999999999983 444444443 789
Q ss_pred CHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHhhchh
Q 026999 65 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWK 119 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~--------------------~d~Al~~yd~~i~~ 119 (229)
++++|+..++++....+..+. ......+..+|..+...| + +++|++.|++.+.-
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999775544222 223446778999999987 9 99999999887765
No 128
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=2.7e-06 Score=62.43 Aligned_cols=82 Identities=12% Similarity=0.006 Sum_probs=72.3
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~e 68 (229)
.|+.+.+.....+++..+|+++ .++..+|.++...|+|++|++..++++.++|++ +.++.. .+|++++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 4889999999999999888877 688999999999999999999999999999999 554544 7999999
Q ss_pred HHHHHHHchhhccC
Q 026999 69 AVQFMEECSSTWSS 82 (229)
Q Consensus 69 gi~~le~~~~~w~~ 82 (229)
|+..+++.....+.
T Consensus 95 A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 95 AQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999885444
No 129
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.33 E-value=1.8e-06 Score=74.03 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=68.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCC------hhhHHH------hhCCHHHHHHHHHHchhhccCCCCcc-hhhhHHHH
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFM-YTHNWWHV 95 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~d------awA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~-~~H~~WHl 95 (229)
+-.+...|+|++|.+..++|+++.|.. +.++.. .+|++++|+..++++.......+... ....+-.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556789999999999999999996543 333333 68999999999999988766544321 12244469
Q ss_pred HHHHHhC-CCCHHHHHHHHHhhch
Q 026999 96 ALCYLEG-HSPMRKVLEIYDNHIW 118 (229)
Q Consensus 96 AL~~l~~-gg~~d~Al~~yd~~i~ 118 (229)
|..|... | ++++|++.|++.+.
T Consensus 124 g~~~~~~lg-~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 124 GEILENDLH-DYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-CHHHHHHHHHHHHH
Confidence 9999985 7 99999999998875
No 130
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6.8e-06 Score=61.03 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=72.6
Q ss_pred CCChhHHHHHHHhhCCCCCCc---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
.|+.+.+....++++...|++ ..++..+|..+...|+|++|++..+++++++|+++.++.. ..|++++|+.
T Consensus 41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120 (148)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 488999999999999999987 8899999999999999999999999999999999877766 7999999999
Q ss_pred HHHHchh
Q 026999 72 FMEECSS 78 (229)
Q Consensus 72 ~le~~~~ 78 (229)
++++...
T Consensus 121 ~~~~al~ 127 (148)
T 2dba_A 121 DLQRCVS 127 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 131
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=1.3e-06 Score=67.81 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCChhHHHHHHHhhCCC------------------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-
Q 026999 1 MGRPDLCFDIIHQVLPY------------------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------------------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha- 61 (229)
.|+.+.++..-.+++.. .|.+..++..+|.++...|+|++|+..+++||+++|+++.++..
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 37788888888888876 56666888899999999999999999999999999999877766
Q ss_pred -----hhCCHHHHHHHHHHchh
Q 026999 62 -----HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 62 -----~~Gr~~egi~~le~~~~ 78 (229)
..|++++|+..++++..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHh
Confidence 67888888888888876
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.2e-06 Score=66.40 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH-------HH------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ-------HA------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~-------Ha------~~Gr~~ 67 (229)
.|+.+.++..-.+++..+|.++.++..+|.++.+.|+|++|++..++||+++|++.-.. .. .+|+++
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 48999999999999999999999999999999999999999999999999999885432 22 689999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
+|+.+.+++..
T Consensus 101 ~A~~~~~kal~ 111 (127)
T 4gcn_A 101 LAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 133
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.32 E-value=9.3e-06 Score=70.15 Aligned_cols=113 Identities=8% Similarity=-0.065 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHH--HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS--LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~--L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
+|+.+.+....++++...|++....-..++. +...|++++|++..+++++.+|+++.++.. .+|++++|+..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5899999999999999888876444334432 234589999999999999999999988776 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHH-HHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK-VLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~-Al~~yd~~i~~ 119 (229)
++++.. .+|-. ...+-+++.++...| ++++ +.+++++.+..
T Consensus 223 l~~al~----~~p~~-~~~l~~l~~~~~~~g-~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALD----KDSGH-PETLINLVVLSQHLG-KPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHH----HCTTC-HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHH----hCCCC-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 999988 33321 234557999999987 7765 56788776655
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=1.4e-06 Score=74.74 Aligned_cols=81 Identities=11% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred Hchhhcc
Q 026999 75 ECSSTWS 81 (229)
Q Consensus 75 ~~~~~w~ 81 (229)
++...-+
T Consensus 97 ~al~l~p 103 (281)
T 2c2l_A 97 RAYSLAK 103 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHhCc
Confidence 9876433
No 135
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.31 E-value=7.6e-05 Score=68.74 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=115.9
Q ss_pred HHHHHHHhhCC-CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---hhHHH----hhCCHHHHHHHHHHch
Q 026999 6 LCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHA----HDCCFKEAVQFMEECS 77 (229)
Q Consensus 6 ~~~~~~~ralp-~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da---wA~Ha----~~Gr~~egi~~le~~~ 77 (229)
.++...+|++. ..|.+..++..++-.++..|++++|++..+++|+++|+++ |..-. .+|+.++++..++++.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999999998 7999999999999999999999999999999999999985 33322 5899999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHH-HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHH
Q 026999 78 STWSSCSSFMYTHNWWHVALC-YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 156 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~-~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~ 156 (229)
. .+|. ..+.++-.++. +...| ++++|+++|++.+... ++ .......-+.+++++ |- .++-.
T Consensus 384 ~----~~~~-~~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~--p~---~~~~~~~~~~~~~~~---g~----~~~Ar 445 (530)
T 2ooe_A 384 E----DART-RHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKY--GD---IPEYVLAYIDYLSHL---NE----DNNTR 445 (530)
T ss_dssp T----CTTC-CTHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH--TT---CHHHHHHHHHHHTTT---TC----HHHHH
T ss_pred h----ccCC-chHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHC--CC---CHHHHHHHHHHHHhC---CC----HhhHH
Confidence 7 3333 23444444443 23465 9999999999988763 21 122223333333221 21 23455
Q ss_pred HHHHHHHhhhhccccchhhHHH--HHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 157 VLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 157 ~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
.+.+......+.......++-. +--....|+.+.+..+.....+..
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5555544432211111112221 112344688887777776665544
No 136
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.1e-07 Score=65.60 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhHH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWW 93 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~W 93 (229)
++..+..+|..+...|+|++|++..++|++++|+++.++.. ..|++++|+..++++...-+..++ ......+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567788899999999999999999999999999988877 799999999999999883333211 11133556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~ 115 (229)
.++.++...| +++++++.|++
T Consensus 83 ~~~~~~~~~~-~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVG-SVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHH-CCCCCSSSSSS
T ss_pred HHHHHHHHHH-hHhhhHhHHHH
Confidence 7788888876 77777766643
No 137
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.31 E-value=1.1e-05 Score=69.35 Aligned_cols=194 Identities=12% Similarity=0.002 Sum_probs=107.8
Q ss_pred CCChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhC--
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQ--------------------MSDAEEAAKKGLKIN-- 52 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~--------------------~d~Ae~~a~rAL~Ln-- 52 (229)
+|+.+.++....+++...+. ...++..+|..+...|+ +++|++..++++++.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777665432 23477777777777887 888888888887772
Q ss_pred ----CCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 53 ----KHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 53 ----P~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
|..+.+... .+|++++|+..++++.......+. ......+..+|..++..| ++++|+..|++.+....
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLAR 258 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHH
Confidence 222323332 578888888888888665444321 122335567888888886 88888888887765431
Q ss_pred cCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHh-------hhhccccchhhHHHHHHHhcCCCcHHHHHH
Q 026999 122 EKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD-------QANWYLECHLDLLILWALANTGEVSKAEDL 194 (229)
Q Consensus 122 ~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~-------~~~~~~~~F~d~H~~~al~~ag~~~~~~~l 194 (229)
. .+ .......+...+-++.+.-. ++++-...... ..+....+..-.....++...|+.+.+.+.
T Consensus 259 ~-~~--~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 259 Q-LK--DRAVEAQSCYSLGNTYTLLQ------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp H-TT--CHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred h-Cc--CchHHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 11 12112222222222222211 22222222221 111111122223345566677888887777
Q ss_pred HHHHHHHhhc
Q 026999 195 LKGLKSRHSK 204 (229)
Q Consensus 195 l~~~~~~~~~ 204 (229)
+...-+....
T Consensus 330 ~~~al~~~~~ 339 (406)
T 3sf4_A 330 AEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655544
No 138
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.30 E-value=2.9e-06 Score=75.68 Aligned_cols=112 Identities=10% Similarity=-0.029 Sum_probs=87.3
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------------------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------------------- 61 (229)
|+.+.+....++++...|.++.++..+|..+...|++++|++..++|++++|+++.+++.
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556778888888888889999999999999999999999999999999999999888765
Q ss_pred -----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 -----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 -----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+..++++..++++...-+. ..-.+..+|..+...| ++++|+..|++.+..
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~~-~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDN-----LFRVCSILASLHALAD-QYEEAEYYFQKEFSK 363 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTT-----TCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCc-----hhhhhhhHHHHHHHhc-cHHHHHHHHHHHHhc
Confidence 123466777777777662222 1223456999999997 999999999998865
No 139
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.29 E-value=3.4e-06 Score=75.20 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=86.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH---HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------hhCCHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF---SLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------HDCCFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF---~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------~~Gr~~e 68 (229)
++.+++....++++..+|+++.++..++. .+...+++++|.+..++|++++|+++.+... ..|+.++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 45778999999999999988876655554 4666788899999999999999999887654 4688999
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++..++++... +|. ....+-.+|.++...| ++++|+..|++.+..
T Consensus 232 a~~~~~~al~~----~~~-~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 232 GEKLVEEALEK----APG-VTDVLRSAAKFYRRKD-EPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHH----CSS-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----Ccc-HHHHHHHHHHHHHHcC-chHHHHHHHHHHHHh
Confidence 99999999872 332 2234457999999997 999999999998876
No 140
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.29 E-value=3.2e-06 Score=74.24 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHhhCCC------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-------hHHH------
Q 026999 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-------SQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-------A~Ha------ 61 (229)
.|+.+.++....+++.. .+..+.++..+|..+...|++++|.+..++|+++.|+... ++..
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 48899999999999875 2235688999999999999999999999999999766543 2222
Q ss_pred hhCCHHHHHHHHHHchhhccCCC-CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++.+.....+ +......+..+|.+|...| ++++|++.|.+.+.-
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 68999999999999976544433 2223346667999999997 999999999998874
No 141
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=6.4e-07 Score=66.21 Aligned_cols=81 Identities=11% Similarity=0.002 Sum_probs=64.1
Q ss_pred HhCCHHHHHHHHHHHHhh---CCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCC
Q 026999 34 ELGQMSDAEEAAKKGLKI---NKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~L---nP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg 104 (229)
..|++++|++..++||++ +|+++.++.. .+|++++|+..++++....+. + ...+..+|.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~----~~~~~~l~~~~~~~g- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-H----QALRVFYAMVLYNLG- 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c----hHHHHHHHHHHHHcC-
Confidence 368999999999999999 5888777776 799999999999999884333 1 234457999999997
Q ss_pred CHHHHHHHHHhhchhh
Q 026999 105 PMRKVLEIYDNHIWKE 120 (229)
Q Consensus 105 ~~d~Al~~yd~~i~~~ 120 (229)
++++|++.|++.+...
T Consensus 76 ~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 76 RYEQGVELLLKIIAET 91 (117)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998873
No 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=3.4e-06 Score=77.67 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=92.8
Q ss_pred CCChhHHHHHHHhhCCCCCCc---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---------------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---- 61 (229)
.|+...+.....+++...|.+ ..++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 360 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 488999999999999988877 5899999999999999999999999999999999998877
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH-HHHHhhchh
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDNHIWK 119 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al-~~yd~~i~~ 119 (229)
..|++++|+..++++.. .+|.. .-.+..++.++...+ +++++. .+|.+.+..
T Consensus 361 ~~~~g~~~~A~~~~~~al~----l~P~~-~~a~~~l~~~~~~~~-~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLE----VNPQN-KAARLQISMCQKKAK-EHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHT----TC-----CHHHHHHHHHHHHH-HHHHHHHHHHHHC---
T ss_pred HHHccCHHHHHHHHHHHHH----hCCCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 79999999999999988 44432 245667999988887 888776 456555443
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=2e-06 Score=70.11 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHhhCCCCCC-------ch-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCChhhH--
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ-------ED-----FIFGILAFSLLELGQMSDAEEAAKKGLKI-------NKHDCWSQ-- 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~-------~~-----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-------nP~dawA~-- 59 (229)
.|+.+.+...-.+++...|+ +. .++..+|.++...|+|++|+..+++||++ +|+++.++
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 38899999999999998887 33 39999999999999999999999999999 99999888
Q ss_pred --HH------hhCCHHHHHHHHHHchh
Q 026999 60 --HA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 60 --Ha------~~Gr~~egi~~le~~~~ 78 (229)
.. ..|+++||+..++++..
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55 79999999999999987
No 144
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.27 E-value=1.1e-05 Score=66.70 Aligned_cols=198 Identities=14% Similarity=0.028 Sum_probs=121.3
Q ss_pred CCChhHHHHHHHhhCCC------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~ 62 (229)
.|+.+.++....+++.. .+....++..+|..+...|++++|++..++++++.|.... +... .
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 47888899888888765 3445678899999999999999999999999999876533 2222 6
Q ss_pred hCC--------------------HHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 63 DCC--------------------FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 63 ~Gr--------------------~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
.|+ +++++..++++.......+. ......+..+|..++..| ++++|++.|++.+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 889 99999999888654433222 223446677999999997 99999999998876531
Q ss_pred cCCCCCchhhhhhHHHHHHHHhhc-CCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 122 EKPDAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 122 ~~~~~~~~~~~~Da~sLLwRL~l~-G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
. .+ .......+...+-++.+. |.....-.-.+...............+..-......+...|+.+.+.+.++....
T Consensus 215 ~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 215 E-FG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp H-HT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 11 111122222222222111 2110001222222222222111122223333446667788998888777766555
Q ss_pred Hh
Q 026999 201 RH 202 (229)
Q Consensus 201 ~~ 202 (229)
..
T Consensus 292 ~~ 293 (338)
T 3ro2_A 292 IA 293 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 145
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.27 E-value=4.8e-05 Score=70.10 Aligned_cols=178 Identities=11% Similarity=0.018 Sum_probs=117.1
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHh-hCCCChhhHHH------hhC
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLE-------LGQMS-------DAEEAAKKGLK-INKHDCWSQHA------HDC 64 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e-------~g~~d-------~Ae~~a~rAL~-LnP~dawA~Ha------~~G 64 (229)
+++...++++...|.++.+...+|-.+.. .|+++ +|++..++|++ ++|+++..+.. ..|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 55667788888888888888888887775 69987 99999999997 89999877666 689
Q ss_pred CHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 65 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
++++++..++++.. .+|..+.-+|=.++.++...| ++++|+++|++.+... +. .....+..+-+.|+ .
T Consensus 336 ~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~Al~~~--~~---~~~~~~~~a~~~~~--~ 403 (530)
T 2ooe_A 336 KYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDA--RT---RHHVYVTAALMEYY--C 403 (530)
T ss_dssp CHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCT--TC---CTHHHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcc--CC---chHHHHHHHHHHHH--H
Confidence 99999999999988 444323335556788777776 8999999999988642 11 12223322222222 1
Q ss_pred cCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 145 RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 145 ~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.|- .++=..+.+......++....+ .+++-.+...|+.+.++.+++..-..
T Consensus 404 ~~~----~~~A~~~~e~al~~~p~~~~~~--~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 404 SKD----KSVAFKIFELGLKKYGDIPEYV--LAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCC----HHHHHHHHHHHHHHHTTCHHHH--HHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred cCC----hhHHHHHHHHHHHHCCCCHHHH--HHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 222 1122222222222223322112 44455567889999898888765543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=2.9e-06 Score=74.99 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=93.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC----ChhhHHH----hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH----DCWSQHA----HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~----dawA~Ha----~~Gr~~egi~~ 72 (229)
.|+.++++...+++++..|++. .+.++|..+.+.|++++|++..++++...++ +++.... ..|+++||+++
T Consensus 115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3889999999999999999888 9999999999999999999999998886422 2333333 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++....- .+|....-.++.+|+++.++| +.++|.++|++.+..
T Consensus 194 l~~a~~g~--~~P~~~~da~~~~glaL~~lG-r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 194 LTEANDSP--AGEACARAIAWYLAMARRSQG-NESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTST--TTTTTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCC--CCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 99997511 103223446678999999997 999999999988876
No 147
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.24 E-value=3.2e-05 Score=67.94 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=92.3
Q ss_pred CCChhHHHHHHHhhCCCCC---C----chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--Ch----hhHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYNQ---Q----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DC----WSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~---~----~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~--da----wA~Ha------ 61 (229)
+|+.+.++....+++...+ + ....+..+|.++...|+|++|++..++|+++.+. +. .+.+.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5888899999999887532 2 3467889999999999999999999999998653 22 22222
Q ss_pred hhCCHHHHHHHHHHchhhccCC-CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSC-SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~-~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|++++|+..++++....... +|. ....+..+|..+...| ++++|+..|++.+.-.
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 6999999999999997744422 223 2556678999999997 9999999999988763
No 148
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.23 E-value=4e-06 Score=60.72 Aligned_cols=61 Identities=11% Similarity=-0.028 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
+|+++.++..+|.++...|+|++|++..+++++++|+++.++.. ..|++++|+..++++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999998765444 45555555555555544
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=7.6e-07 Score=82.07 Aligned_cols=96 Identities=8% Similarity=-0.046 Sum_probs=80.6
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------hhhHHH------hhCCHHHHHHHHHHc
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---------------awA~Ha------~~Gr~~egi~~le~~ 76 (229)
.|..+..+..+|..+...|+|++|+...++||+++|++ +.++.. ..|++++|+..++++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999 355444 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+. .+|- ..-.+..+|.+|+.+| ++++|+..|++.+..
T Consensus 344 l~----~~p~-~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 344 LG----LDSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLEV 380 (457)
T ss_dssp HH----HSTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred Hh----cCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 88 3332 1345567999999997 999999999998875
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=9.6e-06 Score=62.76 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------------------CCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------NKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------------------nP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+...|..+...|+|++|+...++||++ +|.++.++.. ..|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 355667888899999999999999999999 5555555554 7999999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|. ..-.+..+|.+|+.+| ++++|+..|.+.+.-
T Consensus 91 ~~----~p~-~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KR----EET-NEKALFRRAKARIAAW-KLDEAEEDLKLLLRN 126 (162)
T ss_dssp HH----STT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hc----CCc-chHHHHHHHHHHHHHh-cHHHHHHHHHHHHhc
Confidence 83 332 2345567999999997 999999999998876
No 151
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=1.4e-06 Score=71.04 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=60.7
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCC----------HHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCC----------FKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr----------~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
.+..++|++|.+.+++|+++||+++-++.. ..|+ +++||..+++++. .+|- ..-.||.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcC-cHHHHHHH
Confidence 345567778888888888888888777765 3443 4588888888877 5553 23466778
Q ss_pred HHHHHhCC----------CCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGH----------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~g----------g~~d~Al~~yd~~i~~ 119 (229)
+.+|..+| |++++|++.|++.|.-
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 88887763 3899999999999987
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.15 E-value=5.2e-06 Score=71.61 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=83.5
Q ss_pred CCChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------~ 62 (229)
+|+.+.++...++++..++. ....+..+|.++.. |++++|++..++|+++.|.+. .++.. .
T Consensus 89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 47788888888888775321 23577788888877 999999999999999988652 22222 6
Q ss_pred hCCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+|++++|+..++++.......+.. .....+-.++++++..| ++++|+..|++.+
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al 222 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 899999999999988755553321 11224455788888886 8999999998888
No 153
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.5e-07 Score=63.92 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|++..+++++++|++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4899999999999999999999999999999999999999999999999999998
No 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=5.9e-06 Score=74.42 Aligned_cols=105 Identities=7% Similarity=-0.048 Sum_probs=85.9
Q ss_pred CCChhHHHHHHHhhCC----------------CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLP----------------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp----------------~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
.|+.+.++...++++. ..|.+..++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3788888888888887 667788899999999999999999999999999999999988877
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 111 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~ 111 (229)
..|++++|+..++++.. .+|-. .-.+..++.++...+ +++++.+
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~----l~P~~-~~~~~~l~~~~~~~~-~~~~a~k 362 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQE----IAPED-KAIQAELLKVKQKIK-AQKDKEK 362 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCTTC-HHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH----hCCCC-HHHHHHHHHHHHHHH-HHHHHHH
Confidence 79999999999999987 34321 234456777776665 6766653
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.13 E-value=3.9e-05 Score=65.23 Aligned_cols=117 Identities=9% Similarity=0.067 Sum_probs=72.5
Q ss_pred CChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHH---hhCCCChh----hHHH------h
Q 026999 2 GRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDCW----SQHA------H 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL---~LnP~daw----A~Ha------~ 62 (229)
|+.+.++....+++...+. ...++..+|.++...|+|++|++..++|+ ...|++.. +... .
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 5677777777777653221 13466777777777888888888888877 44555432 2111 5
Q ss_pred hCCHHHHHHHHHHchhhccCCC-CcchhhhHHHHHHHHHhCCCCHHHH-HHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~WHlAL~~l~~gg~~d~A-l~~yd~~i~~ 119 (229)
+|++++|+.+++++...-...+ .....-.+..+|.+|..+| ++++| ...|++.+.-
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 7788888877777754332211 1222445566777777776 77777 6667665543
No 156
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.13 E-value=0.00042 Score=56.46 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=100.9
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhC----CHHHHHHHHHHch
Q 026999 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDC----CFKEAVQFMEECS 77 (229)
Q Consensus 7 ~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~G----r~~egi~~le~~~ 77 (229)
++...+++... .++.++..+|..+...+++++|++..++|++. +++.+... ..| ++++|+.+++++.
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 34444555543 78889999999999999999999999999875 57777766 446 8999999999997
Q ss_pred hhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccc
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 153 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~ 153 (229)
. .+.. .. +..++.+|+. .+ ++++|+++|.+.+... +.....+|...|=.+...|..| ..
T Consensus 81 ~----~g~~-~a--~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~-------~~~~~~~a~~~Lg~~y~~g~g~--~~ 143 (212)
T 3rjv_A 81 E----AGSK-SG--EIVLARVLVNRQAGAT-DVAHAITLLQDAARDS-------ESDAAVDAQMLLGLIYASGVHG--PE 143 (212)
T ss_dssp H----TTCH-HH--HHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSST-------TSHHHHHHHHHHHHHHHHTSSS--SC
T ss_pred H----CCCH-HH--HHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcC-------CCcchHHHHHHHHHHHHcCCCC--CC
Confidence 6 2322 22 3369999887 66 9999999999877652 1112456777777777777753 45
Q ss_pred cHHHHHHHHHhhhh
Q 026999 154 RLKVLADCVADQAN 167 (229)
Q Consensus 154 rW~~la~~~~~~~~ 167 (229)
..+.-......-..
T Consensus 144 d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 144 DDVKASEYFKGSSS 157 (212)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666555555433
No 157
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=4.3e-06 Score=73.92 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=71.2
Q ss_pred CCChhHHHHHHHhhCCCCCCch-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~-----------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-- 61 (229)
.|+...+.....+++...|.+. .++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG 271 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4788999999999998888776 378899999999999999999999999999999988877
Q ss_pred ----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++...-+. + + ..+..++.......+..+++.++|.+.+..
T Consensus 272 ~a~~~~g~~~~A~~~l~~al~l~p~-~---~-~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 272 KAKAELGQMDSARDDFRKAQKYAPD-D---K-AIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-C---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 799999999999999873222 1 1 222235544233234788899999887765
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.11 E-value=3.6e-05 Score=65.42 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=87.2
Q ss_pred CCChhHHHHHHHhhCCCCCCch------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hh----hHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CW----SQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--aw----A~Ha------~ 62 (229)
.|+.+.+.....+++...+... ..+..+|..+...|++++|++..++||++.++. .+ +... .
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 3788888888888887655332 234446667778899999999999999987654 33 2322 7
Q ss_pred hCCHHHHHHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+..++++.......+ +......+..+|.+|...| +|++|+..|++.+.-
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEI 225 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999984433322 1222256778999999997 999999999987765
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=8.1e-06 Score=58.83 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-------hhhHHH------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHA------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d-------awA~Ha------~~Gr~~ 67 (229)
.|+...+.....+++...|.++.++..+|..+...|++++|+...++++.++|++ +.+... ..|+++
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 4889999999999999999999999999999999999999999999999999987 555444 799999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
+|+.++++...
T Consensus 97 ~A~~~~~~~~~ 107 (131)
T 1elr_A 97 DAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.8e-05 Score=58.60 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------hhCCHHHHHHHHHHchhhccCCCC-cc
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------HDCCFKEAVQFMEECSSTWSSCSS-FM 87 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~ 87 (229)
...++..+|..+...|++++|++..++++++.|+... +... .+|++++|+.+++++.......++ ..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3467888999999999999999999999999876432 2222 799999999999999876555332 22
Q ss_pred hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 88 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 88 ~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....+..+|.++...| ++++|++.|++.+.-
T Consensus 88 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 2345667999999997 999999999887765
No 161
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=2.1e-06 Score=69.86 Aligned_cols=77 Identities=17% Similarity=0.037 Sum_probs=69.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhCCCChhhHHH------hh--
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHA------HD-- 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~----------d~Ae~~a~rAL~LnP~dawA~Ha------~~-- 63 (229)
+.++.++...++++..+|.++.++..+|.+|.+.|++ ++|+...++||+|||+++.++.. .+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999875 59999999999999999988777 33
Q ss_pred ---------CCHHHHHHHHHHchh
Q 026999 64 ---------CCFKEAVQFMEECSS 78 (229)
Q Consensus 64 ---------Gr~~egi~~le~~~~ 78 (229)
|++++|+..++++..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH
Confidence 589999999999998
No 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=2.4e-05 Score=53.69 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.++..+..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+.+++++..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456778889999999999999999999999999999877666 68889999988888877
No 163
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=9.3e-06 Score=59.23 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 026999 39 SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI 112 (229)
Q Consensus 39 d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~ 112 (229)
++|++..+++++++|+++.++.. ..|++++|+..++++... +|. ....|..+|.++...| ++++|+..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF----DPT-YSVAWKWLGKTLQGQG-DRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-CHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----CCC-cHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 45788999999999999988877 799999999999999883 332 2345567999999997 99999999
Q ss_pred HHhhchh
Q 026999 113 YDNHIWK 119 (229)
Q Consensus 113 yd~~i~~ 119 (229)
|++.+..
T Consensus 76 ~~~al~~ 82 (115)
T 2kat_A 76 WESGLAA 82 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988765
No 164
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.03 E-value=1.1e-05 Score=57.02 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=55.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChh-hHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-A~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
.|..+...|+|++|++..+++++++|+++. ++.. ..|++++|+..++++...-+. ....+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD---SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH--------
Confidence 466677888888888888888888888887 6655 688888888888888773222 1122221
Q ss_pred hCCCCHHHHHHHHHhhchhh
Q 026999 101 EGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~~ 120 (229)
+ .+++++..|.+.+...
T Consensus 75 --~-~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 --K-MVMDILNFYNKDMYNQ 91 (99)
T ss_dssp --H-HHHHHHHHHCCTTHHH
T ss_pred --H-HHHHHHHHHHHHhccC
Confidence 3 5777888887777663
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.03 E-value=2.5e-05 Score=66.42 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=76.3
Q ss_pred CChhHHHHHHHhhCCCCC--Cc----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CCh----hhHHH------h
Q 026999 2 GRPDLCFDIIHQVLPYNQ--QE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINK---HDC----WSQHA------H 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~--~~----~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP---~da----wA~Ha------~ 62 (229)
|+.+.++....+++...+ .+ ..++..+|.++.+.|+|++|+...++||++-+ .+. .++.. .
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 566777777777776322 22 23677788888888888888888888885322 221 12222 6
Q ss_pred hCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+.+++++..-....+. ......+..+|.+|..+|.++++|++.|++.+.-
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 78888888888888654433332 2224566778888888752358888888777654
No 166
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.03 E-value=2.3e-05 Score=62.29 Aligned_cols=78 Identities=8% Similarity=-0.046 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----------------hhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da----------------wA~Ha--- 61 (229)
+|+.+.++....+++..+|.++.++..+|.++...|++++|++..+++++++|++. .++..
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999876 44444
Q ss_pred ---hhCCHHHHHHHHHHchh
Q 026999 62 ---HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~ 78 (229)
.+|++++|+..++++..
T Consensus 130 ~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 79999999999999988
No 167
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.03 E-value=3.9e-05 Score=67.73 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=127.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHH-------HHHHHHhCCHHHHHHHHHHHHhhCCCChhhH---------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGIL-------AFSLLELGQMSDAEEAAKKGLKINKHDCWSQ--------------- 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~-------AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~--------------- 59 (229)
||...++....+++..+|+.+.+...+ +-+|...+++.++....+++++|+|+..-+.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 688999999999999999998887777 8899999999999999999999999863221
Q ss_pred --------HH----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCC
Q 026999 60 --------HA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV 127 (229)
Q Consensus 60 --------Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~ 127 (229)
.+ ..|++++|.+.+++... .+|-.. ..|-+|+.+++.+ ++++|++.|+..+...
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~--~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPV----AGSEHL--VAWMKAVVYGAAE-RWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHH--HHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchH--HHHHHHHHHHHcC-CHHHHHHHHHHhhccC-------
Confidence 11 69999999999999987 455323 6688999999997 9999999997554431
Q ss_pred chhhhhh-HHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccc--cchhhHHH--HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 128 HPEVYLN-ALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYL--ECHLDLLI--LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 128 ~~~~~~D-a~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~--~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.+.+.+ +.-.| ...-.. -.++++-...+..-...+. ..+.|.++ .+++...|+.+++..+++.+...
T Consensus 166 -d~~~~~~a~~~L---G~al~~---LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 -DKFLAGAAGVAH---GVAAAN---LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp -CHHHHHHHHHHH---HHHHHH---TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHH---HHHHHH---CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111112 21111 111110 1245555555544332332 11555554 88899999999999999888764
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.03 E-value=1.7e-05 Score=61.77 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=74.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHH-HHHhCCH--HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQM--SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~-L~e~g~~--d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+|+.+.++....+++...|.++.++..+|.+ +...|++ ++|++..+++++++|+++.++.. .+|++++|+.
T Consensus 57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence 4899999999999999999999999999999 7789999 99999999999999999887766 7999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
.++++...-+.
T Consensus 137 ~~~~al~~~p~ 147 (177)
T 2e2e_A 137 LWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHTCCT
T ss_pred HHHHHHhhCCC
Confidence 99999884333
No 169
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.02 E-value=0.00012 Score=64.91 Aligned_cols=110 Identities=13% Similarity=-0.052 Sum_probs=78.4
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH----h------h---CCHHH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHA----H------D---CCFKE 68 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha----~------~---Gr~~e 68 (229)
.++++....+++..+|++.-+-...+-+|...| +++++.+...++|.+||++.+++|- . . +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 356777777777777877777777777777777 7788888888888888888777776 1 1 67777
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH--HHHHHHHhhchh
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--KVLEIYDNHIWK 119 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d--~Al~~yd~~i~~ 119 (229)
.+.++++... .+|- -.|.|-|.....-..| +++ ++++.+++.|..
T Consensus 129 EL~~~~~~l~----~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 129 EFDILEAMLS----SDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHh
Confidence 7777777776 2332 2466667666655565 666 777777777766
No 170
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.01 E-value=1.5e-05 Score=72.98 Aligned_cols=108 Identities=6% Similarity=-0.090 Sum_probs=82.6
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH-----------HHHHHHHHHHHhhCCCChhhHHH------hhCCH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM-----------SDAEEAAKKGLKINKHDCWSQHA------HDCCF 66 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~-----------d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~ 66 (229)
..+++++.+|++..+|++++++..+++++.....+ .+|.+ +..++.++|++++++-+ ++|++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 46789999999999999999999999987642211 12333 22456889999998877 69999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+..++++.. +||....|+ -++..+...| ++++|++.|++.+..
T Consensus 294 d~A~~~l~rAl~----Ln~s~~a~~--llG~~~~~~G-~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 294 DESYQAINTGID----LEMSWLNYV--LLGKVYEMKG-MNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHH--HHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCHHHHH--HHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 999999999998 564322221 3566666776 999999999999987
No 171
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.95 E-value=3.1e-05 Score=70.95 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=66.1
Q ss_pred hhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCc
Q 026999 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSF 86 (229)
Q Consensus 13 ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~ 86 (229)
.+++..|.++.++..+++.+.-.|++++|++..+|||++||+ ..++-. +.|++++|++.++++.+ .+|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr----L~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN----LRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCC
Confidence 456778999999999999998899999999999999999975 333222 89999999999999999 8888
Q ss_pred chhhhHHHHHHH
Q 026999 87 MYTHNWWHVALC 98 (229)
Q Consensus 87 ~~~H~~WHlAL~ 98 (229)
.+..+ |.-.++
T Consensus 343 ~~t~~-~~~~l~ 353 (372)
T 3ly7_A 343 ANTLY-WIENGI 353 (372)
T ss_dssp HHHHH-HHHHSS
T ss_pred cChHH-HHhCce
Confidence 77544 555554
No 172
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=2.7e-05 Score=53.38 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|++..+++++++|+++.+...
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999876643
No 173
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.90 E-value=2.7e-05 Score=67.02 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--h----hhHHH-----hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--C----WSQHA-----HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--a----wA~Ha-----~~ 63 (229)
.|+.+.+.+...+++...+. -...+..+|.++...|+|++|++..++|+++.+.. . .++.. ..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 37788888888888776432 24577888899999999999999999999996542 2 22222 34
Q ss_pred CCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|++++|+..++++.......+.. .....+-.+|.+|..+| +|++|+..|++.+...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMY 185 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence 99999999999998866654321 12345567999999997 9999999999988753
No 174
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.89 E-value=0.00024 Score=60.28 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=86.8
Q ss_pred CChhHHHHHHHhhCCCCCCchh------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------hh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDF------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------HD 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~------~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~~ 63 (229)
|+.+.+....++++...+..+. .+..++..+...|++++|....++||.+.+.... +... .+
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence 7888899999998876554332 2223455566677999999999999997654332 2222 79
Q ss_pred CCHHHHHHHHHHchhhccCC--CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 64 CCFKEAVQFMEECSSTWSSC--SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~--~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|++++|+.+.+++....... ++....-.+-.+|.+|..+| +|++|+..|++.+.-.
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS 226 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 99999999999998644432 21223346678999999997 9999999999988753
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=2.9e-05 Score=72.08 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
.+|..+...|+|++|++..++|++++|+++.++.. .+|++++|+..++++.. .+|- ....+..+|..|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC-CHHHHHHHHHHHH
Confidence 34455667899999999999999999999988877 79999999999999998 3443 2345567999999
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
.+| ++++|++.|++.+..
T Consensus 86 ~~g-~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 86 ALG-KFRAALRDYETVVKV 103 (477)
T ss_dssp HHT-CHHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHHh
Confidence 997 999999999998876
No 176
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.87 E-value=7.2e-05 Score=65.64 Aligned_cols=118 Identities=8% Similarity=-0.049 Sum_probs=93.3
Q ss_pred CCChhHHHHHHHhhCCCC------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-------hHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-------SQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-------A~Ha------ 61 (229)
.|+.+.++....+++... +..+.++..+|.++...|++++|....++|+++.|+... +...
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 488899999999988752 235678899999999999999999999999999776432 1111
Q ss_pred hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++.+.....+. ......+-.+|.+|...| ++++|++.|.+.+.-
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 699999999999999775543332 223446667999999997 999999999998873
No 177
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.80 E-value=0.002 Score=58.74 Aligned_cols=105 Identities=8% Similarity=-0.005 Sum_probs=48.4
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----GQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEA 69 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~----g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~eg 69 (229)
+...++...++++...+.++..+..+|..+... +++++|.+..++|. |+++.+... ..|++++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 344444444555444444444444444444332 35555555555544 445444444 23455555
Q ss_pred HHHHHHchhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHhhc
Q 026999 70 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHI 117 (229)
Q Consensus 70 i~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g---g~~d~Al~~yd~~i 117 (229)
+.+++++.. .+ ....++ .++.+|.... .++++|+++|.+.+
T Consensus 271 ~~~~~~Aa~----~g-~~~A~~--~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 271 MKYLDNGRA----AD-QPRAEL--LLGKLYYEGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHH----TT-CHHHHH--HHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHH----CC-CHHHHH--HHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence 555555544 12 111221 3555555410 15666666665554
No 178
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.80 E-value=9e-05 Score=52.14 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=66.7
Q ss_pred CChhHHHHHHHhhCCCCCCchh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSS 78 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~-~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~ 78 (229)
|+.+.+....++++..+|.++. ++..+|.++...|++++|++..+++++++|+++-++. .+...+++...++...
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--RKMVMDILNFYNKDMY 89 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--HHHHHHHHHHHCCTTH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhc
Confidence 7889999999999999999999 9999999999999999999999999999999986653 3677888888777654
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.78 E-value=0.0002 Score=64.33 Aligned_cols=91 Identities=10% Similarity=-0.072 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------hCCCChhhHHH------hhCCHHHHHHHHHHchhhc
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLK----------------INKHDCWSQHA------HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~----------------LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w 80 (229)
..+..+|..+...|+|++|++..++||+ ++|.++.++.. .+|++++|+..++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 4577788899999999999999999999 77777766665 79999999999999998
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|- ..-.+..+|.+|+.+| ++++|++.|++.+..
T Consensus 302 --~~p~-~~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 302 --IDPS-NTKALYRRAQGWQGLK-EYDQALADLKKAQEI 336 (370)
T ss_dssp --TCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred --hCch-hHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 3432 2345567999999997 999999999998876
No 180
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.78 E-value=0.00013 Score=64.67 Aligned_cols=177 Identities=8% Similarity=-0.017 Sum_probs=118.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHH----HHh---CCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH--
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSL----LEL---GQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK-- 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L----~e~---g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~-- 67 (229)
+....++...+++..+|.+..+-...+.++ ... ++++++.+...++|+++|++.++++- ..|+++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 778899999999999999888888888888 666 78999999999999999999999887 578887
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH------HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR------KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d------~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
+.+++.++... .+|. -.|-|-|........+ +.. ++++.+++.|... --|.++-.+|
T Consensus 164 ~EL~~~~~~i~----~d~~-N~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~-----------p~n~SaW~y~ 226 (306)
T 3dra_A 164 KELSFVDKVID----TDLK-NNSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKC-----------PQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHHHH----HCTT-CHHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHC-----------SSCHHHHHHH
T ss_pred HHHHHHHHHHH----hCCC-CHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhC-----------CCCccHHHHH
Confidence 99999999987 3433 3466666666544443 211 3555555555541 2366777676
Q ss_pred HhhcCCcccccccHHHHHHHHHhhhh----ccccchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQAN----WYLECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~~~----~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
-.+.... |...+.+.....+... ....+|+---.+-++...|+.+.+.++.+.+.
T Consensus 227 ~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 227 LGIHERF---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHT---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhc---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6665442 3334445444444222 13344544444445556677766666655554
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00027 Score=67.34 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=95.3
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChhhHHH------hhC--C
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHA------HDC--C 65 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~----------~d~Ae~~a~rAL~LnP~dawA~Ha------~~G--r 65 (229)
.+++++...+++..+|.+..+....+.++...|+ |++|.+...++|+++|++.++++- ..| +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4578999999999999999999999999999998 999999999999999999999988 567 6
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++++++.+++.. .+|. -.|.|-|.+......|..++++++.+++.|..
T Consensus 125 ~~~el~~~~k~l~----~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 125 WARELELCARFLE----ADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp HHHHHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh----hccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 7999999999988 3433 35777777776666643799999999999876
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.75 E-value=0.00028 Score=57.50 Aligned_cols=108 Identities=11% Similarity=0.050 Sum_probs=54.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC----CHHHHHHHHHHHHhhCCCChhhHHH------h----hCCHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG----QMSDAEEAAKKGLKINKHDCWSQHA------H----DCCFK 67 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g----~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~~ 67 (229)
||.+.++...++++.. +++.++..+|..+.. + ++++|.+..++|+ +++++.+... . .++++
T Consensus 32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~ 106 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVA 106 (212)
T ss_dssp TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHH
Confidence 4555555555555432 345555555555555 4 5666666666653 3445555444 1 44556
Q ss_pred HHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 68 EAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
+|+.+++++.. .++. -..--+..++.+|+. .+ ++++|+.+|.+.+..
T Consensus 107 ~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 107 HAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc
Confidence 66666665554 2320 001111235555555 43 566666666555543
No 183
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.67 E-value=7.1e-05 Score=66.70 Aligned_cols=76 Identities=8% Similarity=-0.051 Sum_probs=66.9
Q ss_pred ChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCCCC-hhhHHH-------hhCCHH
Q 026999 3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLE-----LGQMSDAEEAAKKGLKINKHD-CWSQHA-------HDCCFK 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e-----~g~~d~Ae~~a~rAL~LnP~d-awA~Ha-------~~Gr~~ 67 (229)
....+++.++|++..+|. ++-+|..+|..+.. -|+.++|++..+|||+|||+. +.+... .+|+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 457889999999999998 66799999999888 499999999999999999975 766666 269999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
++.+.+++++.
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999988
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=6.7e-05 Score=66.17 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-----------------hHHH------hhCCHHHHHHHHHHch
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----------------SQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-----------------A~Ha------~~Gr~~egi~~le~~~ 77 (229)
....+...|..+...|+|++|+...++|++++|++.. ++.. ..|++++|+..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456777888888999999999999999999999862 2222 7999999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|. ....+..+|.+|+.+| ++++|+..|.+.+..
T Consensus 258 ~~----~p~-~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TE----EEK-NPKALFRRGKAKAELG-QMDSARDDFRKAQKY 293 (338)
T ss_dssp HH----CTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-
T ss_pred Hh----CCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 73 332 1345567999999997 999999999998765
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=4.5e-05 Score=55.01 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
+|+.+.++...++++..+|+++.++..+|.++...|++++|++..++|++++|++....
T Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 20 HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 58999999999999999999999999999999999999999999999999988765443
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.55 E-value=0.0059 Score=55.41 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=59.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChhhHHH------h----hCCHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHA------H----DCCFK 67 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~~ 67 (229)
||.+.+....++++.. +++.++..+|..+.. .+++++|.+..++|++.+ ++.+... . .++++
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4555666666666543 455566666666666 666777777777666543 4444433 1 45666
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhch
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~ 118 (229)
+|+.+++++.. .+.. . .+..+|.+|.. .+ ++++|+++|.+.+.
T Consensus 133 ~A~~~~~~a~~----~~~~-~--a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 133 ESVKWFRLAAE----QGRD-S--GQQSMGDAYFEGDGVTR-DYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHH----TTCH-H--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----CCCH-H--HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHH
Confidence 66666666655 1211 1 12246666655 33 66666666665544
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.50 E-value=0.00037 Score=63.17 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=102.2
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH-------hhC-CHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA-------HDC-CFKEAVQFM 73 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~G-r~~egi~~l 73 (229)
..+++++...+++..+|.+..+-...+.++...| .++++.+...++|.+||++.++++- ..+ ++++.+++.
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4578999999999999999999999999999999 5999999999999999999999998 336 899999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH--------HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--------KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d--------~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
++... .+|- -.|.|-|.....-..| .++ ++++.+++.|... ..|.++--+|-.+.
T Consensus 149 ~k~L~----~dpk-Ny~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~d-----------p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 149 HGSLL----PDPK-NYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVD-----------GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHTS----SCTT-CHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHH
T ss_pred HHHHH----hCCC-CHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHH
Confidence 99987 3443 3577777766655554 566 9999999888762 12555666665554
Q ss_pred C
Q 026999 146 G 146 (229)
Q Consensus 146 G 146 (229)
.
T Consensus 212 ~ 212 (349)
T 3q7a_A 212 V 212 (349)
T ss_dssp T
T ss_pred H
Confidence 3
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00027 Score=66.56 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=85.6
Q ss_pred CChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH-------
Q 026999 2 GRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha------- 61 (229)
|+.++++...++++.. +|+-...+..+|.++...|+|++|+..++++|++ -|+++....+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6777777777777653 2334467888999999999999999999999986 5777766555
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhh-----hHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTH-----NWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H-----~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.+|+++||+..++++...... .+-+.| ..=-++.++.+++ .|++|..+|.+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~--~lG~~Hp~~~~~~~~l~~~~~e~~-~~~~ae~~~~~~~ 462 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLV--THGPSHPITKDLEAMRMQTEMELR-MFRQNEFMYHKMR 462 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH--HTCTTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 699999999999999765443 111223 2234888999997 9999999997753
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=0.00034 Score=66.68 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=90.2
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH------hhC-CHHHHHHHHH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHA------HDC-CFKEAVQFME 74 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G-r~~egi~~le 74 (229)
..+++....+++..+|.+..+....++++...| ++++|.+...++|+++|+|..|++- ..| +.++++++.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 678899999999999999999999999999999 7799999999999999999888877 466 8999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCC-------------CCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGH-------------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~g-------------g~~d~Al~~yd~~i~~ 119 (229)
+++. .+|. -.-.|-|.+..+..++ +.++++++.|++.|..
T Consensus 169 ~~I~----~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 169 SLIT----RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp TTTT----TTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 9988 4543 1223334444433320 2689999999999976
No 190
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.45 E-value=0.00021 Score=52.24 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=43.7
Q ss_pred CCCchhHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQ---MSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~---~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.|+++.+++.+|-+|...++ .++|++..++||+++|+++-+.-- .+|++++|+...++...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777777777765544 677777777777777777766655 67777777777777765
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.41 E-value=0.02 Score=51.84 Aligned_cols=47 Identities=11% Similarity=-0.101 Sum_probs=20.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhh
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKI 51 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~L 51 (229)
|.+.++...++++.. +++.++..+|..+.. .+++++|.+..++|++.
T Consensus 130 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 444444444444332 233444444444444 44444444444444443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.41 E-value=0.00096 Score=62.76 Aligned_cols=87 Identities=6% Similarity=-0.023 Sum_probs=67.9
Q ss_pred HHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH---------hhCCHHHHHHHHHHchhhccC----CCCcchhhhHH
Q 026999 32 LLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSS----CSSFMYTHNWW 93 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~----~~~~~~~H~~W 93 (229)
+...|+|++|+...+++|++ -|++++...+ .+|++++|+.+.+++...+.. ..|. ....+-
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHH
Confidence 55689999999999999986 5777776666 699999999999999765433 1221 122445
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|..|..+| +|++|+.+|.+.+...
T Consensus 398 nLa~~~~~~G-~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 398 RAGLTNWHAG-HIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 6999999997 9999999998887653
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.38 E-value=0.0059 Score=55.63 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=94.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHH-H--HHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhC-----CHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS-L--LELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDC-----CFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~-L--~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~G-----r~~e 68 (229)
+|.+.++...+++. |+++.++..+|.. + ...+++++|.+..++|++.+ ++.+... ..| ++++
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~ 305 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKA 305 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 47788999999998 7888888888887 4 46889999999999998654 7777766 677 9999
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g---g~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
|+.|++++. .. ++ ..+ ..++.+|.... .++++|+.+|.+...+. ..+|.--|=.+...
T Consensus 306 A~~~~~~Aa---~g-~~--~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----------~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 306 AEAHFEKAV---GR-EV--AAD--YYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----------QNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHTTT---TT-CH--HHH--HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----------CTTHHHHHHHHHHS
T ss_pred HHHHHHHHh---CC-CH--HHH--HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----------hHHHHHHHHHHHHh
Confidence 999999998 22 32 233 35999988721 18999999998877652 13555566666677
Q ss_pred CCcc
Q 026999 146 GELD 149 (229)
Q Consensus 146 G~~v 149 (229)
|..|
T Consensus 367 G~g~ 370 (452)
T 3e4b_A 367 GKGT 370 (452)
T ss_dssp CTTB
T ss_pred CCCC
Confidence 7653
No 194
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.38 E-value=0.0023 Score=57.41 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=92.2
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChhhHHH------hhC--CH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHA------HDC--CF 66 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~----------~d~Ae~~a~rAL~LnP~dawA~Ha------~~G--r~ 66 (229)
+++++...+++..+|.+.-+-...+.++...+. ++++.+...++|..||++.++++- ..| .+
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 478999999999999999888888888877765 789999999999999999999988 455 48
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCC-HHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-MRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~-~d~Al~~yd~~i~~ 119 (229)
++.+++.++... .+|. -.|.|-|-....-..| . ++++++.+++.|..
T Consensus 127 ~~EL~~~~k~l~----~dpr-Ny~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 127 ARELELCARFLE----ADER-NFHCWDYRRFVAAQAA-VAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCC-CHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHH
Confidence 999999999988 3433 3578888887766776 6 69999999999976
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.30 E-value=0.00056 Score=63.35 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=67.0
Q ss_pred hCCHHHHHHHHHHHHh-----hCCCChhhHHH---------hhCCHHHHHHHHHHchhhccC----CCCcchhhhHHHHH
Q 026999 35 LGQMSDAEEAAKKGLK-----INKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSS----CSSFMYTHNWWHVA 96 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~-----LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~----~~~~~~~H~~WHlA 96 (229)
.|+|++|+...+++|+ +-|+++....+ .+|++++|+.+.+++...+.. ..|- ...-+-.+|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHH
Confidence 5789999999999998 56888887776 699999999999999765443 2221 233445799
Q ss_pred HHHHhCCCCHHHHHHHHHhhchhh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..|..+| +|++|+.+|.+.+...
T Consensus 390 ~~~~~qg-~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLE-NKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHH
Confidence 9999997 9999999999888764
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.28 E-value=0.0011 Score=48.35 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=50.9
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
.+++....++++..+|.++.++.++|+...+.|+|++|...-++.|+.+|.++|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 5788999999999999999999999999999999999999999999999998875
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.25 E-value=0.0018 Score=57.84 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=83.7
Q ss_pred CChhHHHHHHHhhCCCCC--CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hhC--C
Q 026999 2 GRPDLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HDC--C 65 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~--~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~G--r 65 (229)
|+.+++++...+++...| ++..+..+.+..+...|+.+.|++..++..+.+|+..|+-.. .+| +
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 889999999999988876 777888889999999999999999999999999954444332 345 8
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
.+++..++++.....+. +-.....|. +++.+| ++++|.++++..+.
T Consensus 194 ~q~A~~~f~El~~~~p~---~~~~~lLln---~~~~~g-~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 194 ATSNFYYYEELSQTFPT---WKTQLGLLN---LHLQQR-NIAEAQGIVELLLS 239 (310)
T ss_dssp TTHHHHHHHHHHTTSCS---HHHHHHHHH---HHHHHT-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCC---cccHHHHHH---HHHHcC-CHHHHHHHHHHHHH
Confidence 99999999998764332 112223233 677886 99999999975443
No 198
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.16 E-value=0.0017 Score=58.72 Aligned_cols=111 Identities=8% Similarity=-0.007 Sum_probs=92.7
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-C-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH-------
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK------- 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~------- 67 (229)
+..+.+..+.+++..+|.+..+-...++++... + +++++.+...++|+++|+|.+|++- ..|+.+
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 478899999999999999999999999999998 8 9999999999999999999988877 455666
Q ss_pred -HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCC-------HHHHHHHHHhhchh
Q 026999 68 -EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-------MRKVLEIYDNHIWK 119 (229)
Q Consensus 68 -egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~-------~d~Al~~yd~~i~~ 119 (229)
+.+++.++.+. .+|. -.+-|-|.+.....++ + ++++++.+++.|..
T Consensus 184 ~eELe~~~k~I~----~dp~-N~SAW~~R~~lL~~l~-~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 184 GSELDWCNEMLR----VDGR-NNSAWGWRWYLRVSRP-GAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHH----HCTT-CHHHHHHHHHHHTTST-TCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCC-CHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHh
Confidence 99999999988 3433 3456666776655565 5 79999999999876
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.16 E-value=0.0027 Score=48.58 Aligned_cols=103 Identities=5% Similarity=-0.051 Sum_probs=81.3
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----h-----hCCHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----H-----DCCFKEAVQF 72 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~-----~Gr~~egi~~ 72 (229)
|.+.++...+++.......+. +|..+...+.+++|.+..++|.+. +++.+... . .+++++|+.|
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 567788888888876544444 777788888999999999999987 67777776 2 6799999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
++++.+ .+..... ..++.+|.. .+ ++++|+++|.+....
T Consensus 84 ~~~Aa~----~g~~~a~---~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACG----LNDQDGC---LILGYKQYAGKGVVK-NEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHH----TTCHHHH---HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHc----CCCHHHH---HHHHHHHHCCCCCCc-CHHHHHHHHHHHHHC
Confidence 999987 3422232 359999998 66 999999999887765
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0052 Score=53.76 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=103.8
Q ss_pred CChhHHHHHHHhhCCCCCCch-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 2 GRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~-----------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
|+..++.+...+++...+... -++..+|-.+...|++++|.+...+++.+.+...-+...
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 788888888888887655322 246778889999999999999999999998887655333
Q ss_pred ---------hhCCHHHHHHHHHHchhhccCCC-CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhh
Q 026999 62 ---------HDCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEV 131 (229)
Q Consensus 62 ---------~~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~ 131 (229)
..|+.++++.+.+.+...-...+ .+...-.+-.+|..|++.| +|++|+.++.+.+... .+. .....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~-~~~--~~~~~ 173 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF-KKL--DDKPS 173 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH-TTS--SCSTH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH-Hhc--ccchh
Confidence 57999999999998865333322 2334445567999999997 9999999998876542 222 23344
Q ss_pred hhhHHHHHHHHhhcC
Q 026999 132 YLNALGLLLRVYVRG 146 (229)
Q Consensus 132 ~~Da~sLLwRL~l~G 146 (229)
.+++...+.|+.+.=
T Consensus 174 ~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKL 188 (434)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 677777777777753
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0022 Score=59.07 Aligned_cols=87 Identities=6% Similarity=-0.069 Sum_probs=69.1
Q ss_pred HHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH---------hhCCHHHHHHHHHHchhhccC----CCCcchhhhHH
Q 026999 32 LLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSS----CSSFMYTHNWW 93 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~----~~~~~~~H~~W 93 (229)
+...|+|++|++..+++|++ -|+++....+ .+|++++|+.+.+++...+.. ..|. ...-+.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV-RGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH-HHHHHH
Confidence 33578999999999999975 6888877766 699999999999999765433 2222 234566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|..|..+| +|++|+.+|.+.+...
T Consensus 376 nLa~~~~~~g-~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 376 KVGKLQLHQG-MFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 7999999997 9999999999888764
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.94 E-value=0.044 Score=58.08 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=51.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++.+.++|+ ..+.++..+|.+++..|++.+|.....+| +|+.++.. ..|+++++++++..
T Consensus 1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666666 55788889999999999999999999887 67666555 78999999999976
Q ss_pred ch
Q 026999 76 CS 77 (229)
Q Consensus 76 ~~ 77 (229)
+.
T Consensus 1160 Ar 1161 (1630)
T 1xi4_A 1160 AR 1161 (1630)
T ss_pred HH
Confidence 54
No 203
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.88 E-value=0.037 Score=49.54 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=87.3
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH------hhCC-HHHHHHHHH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHA------HDCC-FKEAVQFME 74 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr-~~egi~~le 74 (229)
....+..+.+++..+|.+..+-...++++...| .++++.+...++|+++|+|..|++- ..|+ .++.+++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356788899999999999999999999999988 4999999999999999999888876 5677 599999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCC-------------CCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGH-------------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~g-------------g~~d~Al~~yd~~i~~ 119 (229)
+++. .+|. -...|-|.+......+ +.++++++.+++.|..
T Consensus 170 ~~I~----~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 170 SLIT----RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHH----HCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 9988 3433 1233334443333220 2589999999999977
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.0039 Score=45.48 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHhhCCCC-------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYN-------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~-------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.|+...+....++++... ...+.++..+|+++.+.|++++|....++|+.++|+++.+.+.
T Consensus 18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 367778888887777642 2456789999999999999999999999999999999988766
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.46 E-value=0.0062 Score=56.31 Aligned_cols=81 Identities=7% Similarity=-0.107 Sum_probs=65.0
Q ss_pred CChhHHHHHHHhhCCC-----CCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH-------
Q 026999 2 GRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~-----~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha------- 61 (229)
|+.+++....++++.. .|+++ -.+..+|.++...|+|++|+..++|+|++ -|+++....+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6777888888877763 33444 56778899999999999999999999976 5777776666
Q ss_pred --hhCCHHHHHHHHHHchhhccC
Q 026999 62 --HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~ 82 (229)
.+|+++||+..++++...+..
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHH
Confidence 699999999999999775443
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.32 E-value=0.0065 Score=44.23 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=49.1
Q ss_pred hCCCChhhHHH---hhCCHHHHHHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 51 INKHDCWSQHA---HDCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 51 LnP~dawA~Ha---~~Gr~~egi~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++.|+..+-. .+|++++|+.|++.+...+...+ .+....++-++|.+++.+| ++++|+..|.+.+.-
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Confidence 44555555444 67888888888888877664422 1334456678999999997 999999999988765
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.27 E-value=0.027 Score=50.08 Aligned_cols=78 Identities=10% Similarity=-0.068 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhhCCC--ChhhHHH-----h------hCCHHHHHHHHHHchhhccCCCCc--chhhhHHHHHHHHHh
Q 026999 37 QMSDAEEAAKKGLKINKH--DCWSQHA-----H------DCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLE 101 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~--dawA~Ha-----~------~Gr~~egi~~le~~~~~w~~~~~~--~~~H~~WHlAL~~l~ 101 (229)
...+|+...+|||+|+|+ ++=++.. . -|+.++|...++++.. .||- +-.++ .+|-++..
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~----LnP~~~id~~v--~YA~~l~~ 251 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR----YCSAHDPDHHI--TYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH----HCCTTCSHHHH--HHHHHTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH----hCCCCCchHHH--HHHHHHHH
Confidence 356799999999999999 6545555 2 4999999999999998 5652 33343 37777767
Q ss_pred CCCCHHHHHHHHHhhchhh
Q 026999 102 GHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 102 ~gg~~d~Al~~yd~~i~~~ 120 (229)
..|+++++.+.+++.+...
T Consensus 252 ~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAID 270 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCC
T ss_pred hcCCHHHHHHHHHHHHcCC
Confidence 4349999999999998863
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.24 E-value=0.011 Score=54.37 Aligned_cols=81 Identities=7% Similarity=0.033 Sum_probs=65.7
Q ss_pred CChhHHHHHHHhhCCC-----CCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH-------
Q 026999 2 GRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~-----~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha------- 61 (229)
|+.++++...++++.. .|+++ -.+..+|-++...|+|++|++.++|+|++ -|++|....+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 6778888888888864 23444 46778888999999999999999999976 5888876666
Q ss_pred --hhCCHHHHHHHHHHchhhccC
Q 026999 62 --HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~ 82 (229)
.+|+++||+..++++......
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999775444
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.12 E-value=0.1 Score=39.55 Aligned_cols=106 Identities=11% Similarity=-0.010 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhHHH---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHH
Q 026999 36 GQMSDAEEAAKKGLKINKHDCWSQHA---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRK 108 (229)
Q Consensus 36 g~~d~Ae~~a~rAL~LnP~dawA~Ha---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~ 108 (229)
+++++|.+..++|.+.++.++. +-. ..+..++|+.|++++.. .+...... .++.+|+. .+ ++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~-lg~~y~~g~~~~~A~~~~~~Aa~----~g~~~a~~---~Lg~~y~~G~g~~~-d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC-LSLVSNSQINKQKLFQYLSKACE----LNSGNGCR---FLGDFYENGKYVKK-DLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH-HHHHTCTTSCHHHHHHHHHHHHH----TTCHHHHH---HHHHHHHHCSSSCC-CHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh-HHHHHHcCCCHHHHHHHHHHHHc----CCCHHHHH---HHHHHHHcCCCCCc-cHHH
Confidence 4789999999999999877776 433 45678889999999988 34322333 59999988 65 9999
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHH
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVA 163 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~ 163 (229)
|+++|.+..... ..+|.-.|=.+...|..| ....+.-...+.
T Consensus 80 A~~~~~~Aa~~g-----------~~~a~~~Lg~~y~~G~g~--~~d~~~A~~~~~ 121 (138)
T 1klx_A 80 AAQYYSKACGLN-----------DQDGCLILGYKQYAGKGV--VKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSS--CCCHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----------CHHHHHHHHHHHHCCCCC--CcCHHHHHHHHH
Confidence 999998877542 235566666666777643 444444444433
No 210
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.09 E-value=0.035 Score=54.19 Aligned_cols=183 Identities=9% Similarity=0.060 Sum_probs=110.4
Q ss_pred CChhHHH-HHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----------CCCC-------------h
Q 026999 2 GRPDLCF-DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----------NKHD-------------C 56 (229)
Q Consensus 2 G~~~~~~-~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----------nP~d-------------a 56 (229)
|+...++ ...+|++...|.+..+.-.++-..+..|++++|++..++++.. +|.+ .
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 4555665 7778888777877777777777888888999999999999875 2531 4
Q ss_pred hhHHH----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh
Q 026999 57 WSQHA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 132 (229)
Q Consensus 57 wA~Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~ 132 (229)
|...+ ..|..+++...++++...- + ....++|-..|......+++++.|.++|+..+... +.. ..-.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~---~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~---~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLK---K-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD---GEYI 507 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTG---G-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc---C-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc---hHHH
Confidence 66666 5678889999998887621 2 11345555566665555546899999998888762 111 1112
Q ss_pred hhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh---ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 133 LNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN---WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 133 ~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~---~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
+--+-+++++ |- -++=..+.+....... .....|.-..-. =..-|+.+.++.+.+.+.+..
T Consensus 508 ~~y~~fe~~~---~~----~~~AR~lferal~~~~~~~~~~~lw~~~~~f--E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYV---NE----ESQVKSLFESSIDKISDSHLLKMIFQKVIFF--ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHH---TC----HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH--HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC---CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC
Confidence 2223333332 21 2455566666555433 122222221111 124577777777777766554
No 211
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.90 E-value=0.045 Score=51.17 Aligned_cols=124 Identities=9% Similarity=-0.103 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH--HHHhh-cCCcc--------------cccc
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL--LRVYV-RGELD--------------VFGN 153 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL--wRL~l-~G~~v--------------~vg~ 153 (229)
+|.-+|.++..+| +|++|++.|.+...+. .-..+++++--+ ||+-. .|..+ .-..
T Consensus 150 n~~~LA~~L~~Lg-~yq~AVea~~KA~~~~-------~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 150 NFGRLASTLVHLG-EYQAAVDGARKANSTR-------TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG 221 (449)
T ss_dssp CHHHHHHHHHTTT-CHHHHHHHHHHHTCHH-------HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhc-cHHHHHHHHHHcCCch-------hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCC
Confidence 6677999999997 9999999998874441 112233333221 00000 00000 0024
Q ss_pred cHHHHHHHHHhhhh---ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchH-HHHHHHHHHHHHHhhhhhhc
Q 026999 154 RLKVLADCVADQAN---WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKK-KQELMQTGVQVSSDICLICH 228 (229)
Q Consensus 154 rW~~la~~~~~~~~---~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 228 (229)
+|+++......... .|.-.|.-+ +.+-++-. -+++.+.++.+.++.+-. .-+.+...-...+.+-+|||
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel----~il~~ky~--p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTEL----AILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHH----HHHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHH----HHHHHhcC--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888877533 344445544 55555544 488999999988765532 22223333333344455544
No 212
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.022 Score=49.73 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=86.3
Q ss_pred CChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------hh
Q 026999 2 GRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------HD 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~~ 63 (229)
|+.+.+.+...++++..+. ...+..++++.....|.+++|.+..++++.+.+...- .... .+
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 7889999999999886443 2246677788888889999999999999988654421 1111 79
Q ss_pred CCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..+++........++. ...-.+--.+..|+..| ++++|..+|++.+..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTA 204 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHH
Confidence 99999999999986544433221 12224456788889997 999999999887755
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.35 E-value=0.018 Score=46.32 Aligned_cols=74 Identities=7% Similarity=-0.113 Sum_probs=48.7
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CChhhHHH------hhCCHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKIN-K-HDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g---~~d~Ae~~a~rAL~Ln-P-~dawA~Ha------~~Gr~~egi~~l 73 (229)
..+++...+.++..+.+....+.+|++|..++ +++++....+..+..+ | +....+-- ..|++++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34555666666666677777777777777766 6667777777777776 5 22222222 577777777777
Q ss_pred HHchh
Q 026999 74 EECSS 78 (229)
Q Consensus 74 e~~~~ 78 (229)
+...+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77776
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.33 E-value=0.065 Score=50.06 Aligned_cols=108 Identities=13% Similarity=0.210 Sum_probs=70.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---hhCCHHHHHHHHHHch
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---HDCCFKEAVQFMEECS 77 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~~Gr~~egi~~le~~~ 77 (229)
+|+..++.+...++ .++...-...|+..+.|++++|...+.. |.++|++...+-. ..|+++|++..+++..
T Consensus 161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 161 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 57788888888888 3455555566777777777777666663 5566666554333 5677888877777774
Q ss_pred hh------------------------------ccCCCCcch-------hhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 78 ST------------------------------WSSCSSFMY-------THNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 78 ~~------------------------------w~~~~~~~~-------~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
.. |+..| ..+ .|.|=-+...|++-+ +||.|+...-.+
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in-i~k~~~~~~~~~~w~e~~~ly~~~~-e~d~A~~tm~~h 308 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKYE-EYDNAIITMMNH 308 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-HHHHHHHHHTTTCHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHhC
Confidence 31 55555 333 567777777777775 888777655443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.95 E-value=0.068 Score=42.86 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
....+++...+.++.+|.+.-+.-. ..+..++||..++...+.. +|-...-.+-++|+.|+.+| +|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~-~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLK-EYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHcc-CHH
Confidence 4567888899999988887766555 3457889999999998854 12111223357999999997 999
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
+|++.+++.+..
T Consensus 89 ~A~~y~~~lL~i 100 (152)
T 1pc2_A 89 KALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999987
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.41 E-value=0.7 Score=44.99 Aligned_cols=179 Identities=12% Similarity=-0.052 Sum_probs=109.7
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHH-HHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHHHchhh
Q 026999 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-EAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFMEECSST 79 (229)
Q Consensus 7 ~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae-~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le~~~~~ 79 (229)
.+..-++++-..|.++-+-.++|--+...|+.++|. +..+||+..+|++. |-..+ ..|+++++...++++...
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455666666666666666666688889999996 99999999999986 33333 689999999999998763
Q ss_pred cc--------CCCC---------cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh-hccCCCCCchhhhhhHHHHHHH
Q 026999 80 WS--------SCSS---------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK-ELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 80 w~--------~~~~---------~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~-~~~~~~~~~~~~~~Da~sLLwR 141 (229)
-. ..+. +-..-+|=..+-+....| ..++|.++|++.+.. .. .....++..+.|-++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~-~l~~AR~vf~~A~~~~~~-----~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ-GLAASRKIFGKCRRLKKL-----VTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTGGG-----SCTHHHHHHHHHHHT
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHH
Confidence 21 0010 001224555666655565 799999999998764 11 124456776666666
Q ss_pred HhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
+ |-+ .++-..|.+.....+++..... +.|+--+...|+.+.++.+.+..-
T Consensus 482 ~---~~d---~e~Ar~ife~~Lk~~p~~~~~w--~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 482 I---SKD---TKTACKVLELGLKYFATDGEYI--NKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp T---TSC---CHHHHHHHHHHHHHHTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred h---CCC---HHHHHHHHHHHHHHCCCchHHH--HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4 222 2344555554444433222111 122222334578888888877543
No 217
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.02 E-value=0.49 Score=41.92 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=72.5
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CChhhHHH------hhCCHHHHHHHHHHchhh
Q 026999 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHA------HDCCFKEAVQFMEECSST 79 (229)
Q Consensus 8 ~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP--~dawA~Ha------~~Gr~~egi~~le~~~~~ 79 (229)
+...++.+...+.....+.++|-++...|++++|.+...++|..+| ++.-+.-. ..||+++|...+++....
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455666655445566677999999999999999999999999998 44433333 799999999999876541
Q ss_pred -----ccCCCCcchhhhHHHHHHH--HHh-CCCCHHHHHHHHHhhch
Q 026999 80 -----WSSCSSFMYTHNWWHVALC--YLE-GHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 80 -----w~~~~~~~~~H~~WHlAL~--~l~-~gg~~d~Al~~yd~~i~ 118 (229)
|....... -++-. .+. .|+++.+|..+|++...
T Consensus 166 ~~d~~~~~d~~l~------~Laea~v~l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 166 IEDTVSGDNEMIL------NLAESYIKFATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp SCHHHHHHHHHHH------HHHHHHHHHHHTCSTTTHHHHHHHHHHT
T ss_pred CccccccchHHHH------HHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33322111 13333 332 23489999999988543
No 218
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.62 E-value=1.2 Score=47.36 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=86.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
.|-.+.+.|+|++|.+..+++- ++.++..+-- ..|++++|++++++... .-.|-.+|-+++..| ++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nldrAiE~Aervn~----------p~vWsqLAKAql~~G-~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNLDRAYEFAERCNE----------PAVWSQLAKAQLQKG-MV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC-CH
Confidence 3778899999999999999983 3333322222 78999999999986622 133447999999986 99
Q ss_pred HHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCC
Q 026999 107 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTG 186 (229)
Q Consensus 107 d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag 186 (229)
++|++.|.+. + ....+.+-+.-+-+ -.+|+++-.+...-..-...+..|...+.++++.+
T Consensus 1122 kEAIdsYiKA--------d--D~say~eVa~~~~~----------lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1122 KEAIDSYIKA--------D--DPSSYMEVVQAANT----------SGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHhc--------C--ChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 9999999552 1 12223332222211 24688887777552222222344555777788877
Q ss_pred CcHHHHHHH
Q 026999 187 EVSKAEDLL 195 (229)
Q Consensus 187 ~~~~~~~ll 195 (229)
+.++++..+
T Consensus 1182 rleele~fI 1190 (1630)
T 1xi4_A 1182 RLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHH
Confidence 766655554
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.50 E-value=0.54 Score=43.52 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------------------
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------------------ 61 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------------------ 61 (229)
+.+..-++++-..|.++.+--+++--+...|+.++|....+||+.. |++..-.-+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccc
Confidence 3445566666655666666666666678899999999999999999 998532222
Q ss_pred ----------------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ----------------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ----------------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|..+.+...++++ . .++. ..|.|.-.|.+.+..+++.+.|.++|+..+..
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 134455566666666 2 1222 34565555655554443578888888777765
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.96 E-value=0.64 Score=36.02 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
....+++...++++.++...-+.-. ...+..+||..|+.-.+. .+|...--..-++|+.|+.+| +|+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---~~p~~~Rd~lY~LAvg~yklg-~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLK-EYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHTT-CHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHhh-hHH
Confidence 4556788888888877755444333 455567799999998872 223222234457999999997 999
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
+|++.++..+..
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.67 E-value=1.8 Score=40.24 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhh--CCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH-HHHhCCCCHHH
Q 026999 38 MSDAEEAAKKGLKI--NKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRK 108 (229)
Q Consensus 38 ~d~Ae~~a~rAL~L--nP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL-~~l~~gg~~d~ 108 (229)
+++|.++.++-.+- .||. -...+ ..|++++|..++++... .+ +.|....|..-+ .|...| +.++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g-~~Pd~~tyn~lI~~~~~~g-~~~~ 158 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKA----FG-IQPRLRSYGPALFGFCRKG-DADK 158 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHH----TT-CCCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCccceehHHHHHHHHCC-CHHH
Confidence 56666666554432 3432 23333 57777777777777654 11 112222222222 333444 7777
Q ss_pred HHHHHHhhchhhccCCCCCchhhhh----------hHHHHHHHHhhcCCcccccccHHHHHHH
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYL----------NALGLLLRVYVRGELDVFGNRLKVLADC 161 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~----------Da~sLLwRL~l~G~~v~vg~rW~~la~~ 161 (229)
|+++|+..+..+..+ +...+..++ .|..+|-+|.=.|..+ -..-+..|-+.
T Consensus 159 A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~ 219 (501)
T 4g26_A 159 AYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHH
Confidence 777777776665422 222233333 3445666666666643 13334444443
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.65 E-value=4.6 Score=37.36 Aligned_cols=156 Identities=9% Similarity=0.003 Sum_probs=90.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhh--CCCChhhHHH---------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 31 SLLELGQMSDAEEAAKKGLKI--NKHDCWSQHA---------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~L--nP~dawA~Ha---------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
++...|++++|.++.++..+. .|+ .....+ ..|..++|.+.+++.... + ..|.-..|
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~----G-~~Pd~~ty 108 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD----K-VVPNEATF 108 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----T-CCCCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----C-CCCCHHHH
Confidence 456789999999999888764 443 333333 134478899988887652 2 11222222
Q ss_pred -HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhcccc-
Q 026999 94 -HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLE- 171 (229)
Q Consensus 94 -HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~- 171 (229)
-+--.|...| +.++|+++|+........ .+...++.++++ +--.| ++++....+..-...+..
T Consensus 109 n~lI~~~~~~g-~~~~A~~l~~~M~~~g~~-Pd~~tyn~lI~~------~~~~g-------~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 109 TNGARLAVAKD-DPEMAFDMVKQMKAFGIQ-PRLRSYGPALFG------FCRKG-------DADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHTTCC-CCHHHHHHHHHH------HHHTT-------CHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHcCCC-CccceehHHHHH------HHHCC-------CHHHHHHHHHHHHhcCCCC
Confidence 2444455665 999999999988776542 111122222222 22222 233333333332222221
Q ss_pred ---chhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHH
Q 026999 172 ---CHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKK 209 (229)
Q Consensus 172 ---~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~ 209 (229)
.|+-+ +-+++++|+.+.+.++++.|++.........
T Consensus 174 d~~ty~~L--i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 174 EEPELAAL--LKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp CHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CHHHHHHH--HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 23322 5578899999999999999999876644443
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.53 E-value=1.1 Score=36.49 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChhh-----------HHH----hhCCHHHHHHHHHHchhhccCC------------
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCWS-----------QHA----HDCCFKEAVQFMEECSSTWSSC------------ 83 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~dawA-----------~Ha----~~Gr~~egi~~le~~~~~w~~~------------ 83 (229)
.+.+.|.|+-|+-++..++.+..+++.+ ..+ .+|++..|...++++...-...
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~ 108 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN 108 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3556777777777777766666555542 222 5777777777777652221110
Q ss_pred --------CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 84 --------SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 84 --------~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
+.+--.-+-..+|.||++++ ++++|+.+...
T Consensus 109 ~ss~p~s~~~~~e~Elkykia~C~~~l~-~~~~Ai~~Le~ 147 (167)
T 3ffl_A 109 SASTPQSQCLPSEIEVKYKLAECYTVLK-QDKDAIAILDG 147 (167)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred cCCCcccccccchHHHHHHHHHHHHHHC-CHHHHHHHHhc
Confidence 00111234456999999998 99999999855
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.27 E-value=0.57 Score=36.29 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHhhCCCC-C-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 7 CFDIIHQVLPYN-Q-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 7 ~~~~~~ralp~~-~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
.....+..+... | ..--.+..+|+++...|+|++|.+..++.|+++|+|.-|.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 445555555544 3 3445788999999999999999999999999999997664
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.62 E-value=0.55 Score=36.87 Aligned_cols=53 Identities=4% Similarity=-0.110 Sum_probs=43.3
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
...+..+||..|+.-.+ .+|-..--.+..+|+.|+.+| +|++|++..+..+..
T Consensus 55 ~~~d~~~GI~LLe~l~~----~~~~~~Rd~LYyLAvg~yklg-dY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 55 DVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHh----cCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhh
Confidence 56677899999999877 344334557778999999997 999999999988876
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.20 E-value=1.2 Score=35.02 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCCC-chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 8 FDIIHQVLPYNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 8 ~~~~~ralp~~~~-~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
....+..+...|. .--.+..+|+|+-..|+|++|.+..++.|+++|+|.-|.-
T Consensus 63 I~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 63 VKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3333444443442 3456778899999999999999999999999999976654
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.63 E-value=1.2 Score=35.44 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHhhCCCCC-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 10 IIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 10 ~~~ralp~~~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
..+..+...| ..--.+..+|+++-..|+|++|.+..++.|+++|+|..|.-
T Consensus 64 LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 64 ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3333333334 23356778899999999999999999999999999976653
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.25 E-value=2 Score=34.08 Aligned_cols=53 Identities=4% Similarity=-0.110 Sum_probs=41.9
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
...+..+||..|+.-.+ .+|...--..-.+|+.|+.+| +|++|++..+..+..
T Consensus 54 ~~~di~~GI~LLe~l~~----~~~~~~RdcLYyLAvg~ykl~-~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 54 DVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 106 (144)
T ss_dssp SHHHHHHHHHHHHHHHH----HCCSTHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh----cCccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHhc
Confidence 56778899999999887 233223334457999999997 999999999998877
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.24 E-value=4.4 Score=32.66 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=66.0
Q ss_pred hHHHHHHHhhCCCC--------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hhhHHH----hhCCHHHHH
Q 026999 5 DLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHA----HDCCFKEAV 70 (229)
Q Consensus 5 ~~~~~~~~ralp~~--------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--awA~Ha----~~Gr~~egi 70 (229)
++.++.-+|++..- ..|.|+.--+|. +++.++.++|+...+.++.+..+. .|..+| .+|+.+.|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 66667666666533 335555555553 478899999999999999997777 455555 799999999
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCC
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 103 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g 103 (229)
..|.+++. .+|. +... =-.|+.-|..|
T Consensus 115 kILg~AiG----~~~k-~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 115 QLLQKAVE----RGAV-PLEM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHH----TTCB-CHHH-HHHHHHHHHTT
T ss_pred HHHHHHhc----cCCC-cHHH-HHHHHHhhhcC
Confidence 99999998 5654 3332 13666666665
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.73 E-value=6.4 Score=35.11 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=58.8
Q ss_pred HhCCHHHHHHHHHHHHhhCCC--------ChhhHHH--------------------hhCCHHHHHHHHHHchhhccCCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKH--------DCWSQHA--------------------HDCCFKEAVQFMEECSSTWSSCSS 85 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~--------dawA~Ha--------------------~~Gr~~egi~~le~~~~~w~~~~~ 85 (229)
..|+.++|.+..++||++=.. ..|+... ..|++++++..++.... ..|
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~----~~P 202 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF----EHP 202 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HST
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC
Confidence 357888888888999988533 3465432 48999999999999877 455
Q ss_pred cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 86 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 86 ~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+ .-..|-.+-.++...| +..+|++.|++.-.
T Consensus 203 ~-~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 203 Y-REPLWTQLITAYYLSD-RQSDALGAYRRVKT 233 (388)
T ss_dssp T-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 4 4456667777877886 99999999966433
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=82.52 E-value=7.7 Score=35.64 Aligned_cols=74 Identities=7% Similarity=-0.145 Sum_probs=53.5
Q ss_pred hCCHHHHHHHHHHHHhhCCCC---hhhHHH----hhC-CHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 35 LGQMSDAEEAAKKGLKINKHD---CWSQHA----HDC-CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP~d---awA~Ha----~~G-r~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
.+..++|.+...+| . .|+. .|..-+ ..| +++.|...++.....++. . + -+||-.+-+....| +.
T Consensus 299 ~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~---~-~~~~~yid~e~~~~-~~ 370 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-S---T-LLKEEFFLFLLRIG-DE 370 (493)
T ss_dssp HHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-C---H-HHHHHHHHHHHHHT-CH
T ss_pred cCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-C---H-HHHHHHHHHHHHcC-CH
Confidence 56789999999999 3 4542 232223 234 699999999999886544 2 2 35777788878886 99
Q ss_pred HHHHHHHHhh
Q 026999 107 RKVLEIYDNH 116 (229)
Q Consensus 107 d~Al~~yd~~ 116 (229)
+.|..+|++.
T Consensus 371 ~~aR~l~er~ 380 (493)
T 2uy1_A 371 ENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999999774
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.02 E-value=9.9 Score=33.88 Aligned_cols=77 Identities=10% Similarity=-0.081 Sum_probs=57.2
Q ss_pred CChhHHHHHHHhhCCCCCC--------chhH--------------HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--------EDFI--------------FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--------~~~~--------------~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
|+...+.+...+++..|.+ ++++ .--++-.+.+.|++++|....+++++.+|-+-.++
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5667777888888887642 1221 11233355678999999999999999999996544
Q ss_pred HH------hhCCHHHHHHHHHHchh
Q 026999 60 HA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 60 Ha------~~Gr~~egi~~le~~~~ 78 (229)
-. ..||..+|++..++..+
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33 69999999999988866
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=75.54 E-value=14 Score=29.71 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=71.7
Q ss_pred CCCCCchhHHHHHHHHHHHhCCH------HHHHHHHHHHHhhCCCChhhHHH--------------hhCCHHHHHHHHHH
Q 026999 16 PYNQQEDFIFGILAFSLLELGQM------SDAEEAAKKGLKINKHDCWSQHA--------------HDCCFKEAVQFMEE 75 (229)
Q Consensus 16 p~~~~~~~~~g~~AF~L~e~g~~------d~Ae~~a~rAL~LnP~dawA~Ha--------------~~Gr~~egi~~le~ 75 (229)
|.+|+.|+.+-.+ +|..|+- ++=....+||++--|-+- --+. ..++++++.+....
T Consensus 10 p~~yd~W~~yl~l---lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 10 ANNPEDWLSLLLK---LEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp CCSHHHHHHHHHH---HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCCHHHHHHHHHH---HHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4555666555444 7778887 888899999999998874 1121 35788888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +-.| ..+|=-.|-|.+..| +.++|.++.-+.|.-
T Consensus 86 a~~~---hKkF--AKiwi~~AqFEiRqg-nl~kARkILg~AiG~ 123 (161)
T 4h7y_A 86 ARAN---CKKF--AFVHISFAQFELSQG-NVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHH---CTTB--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHH---hHHH--HHHHHHHHHHHHHcc-cHHHHHHHHHHHhcc
Confidence 8774 3446 677778999999987 999999999998875
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=75.32 E-value=45 Score=31.04 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=63.1
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
..|++++|.+..+... .-..|--+|-.+++.| +++.|.+.|.+. + ..+.+.+|++
T Consensus 664 ~~~~~~~A~~~~~~~~----------~~~~W~~la~~al~~~-~~~~A~~~y~~~------~--------d~~~l~~l~~ 718 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES----------AEMKWRALGDASLQRF-NFKLAIEAFTNA------H--------DLESLFLLHS 718 (814)
T ss_dssp HHTCHHHHHHHHTTCC----------CHHHHHHHHHHHHHTT-CHHHHHHHHHHH------T--------CHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC----------cHhHHHHHHHHHHHcC-CHHHHHHHHHHc------c--------ChhhhHHHHH
Confidence 7888888888754321 1356777999999987 999999999541 1 2355666665
Q ss_pred HhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
. .|. .+.+..++....... + |+. +..++...|+.+.+.+++..+.+
T Consensus 719 ~--~~~----~~~~~~~~~~a~~~~-~----~~~--A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 719 S--FNN----KEGLVTLAKDAETTG-K----FNL--AFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp H--TTC----HHHHHHHHHHHHHTT-C----HHH--HHHHHHHHTCHHHHHHHHHHTTC
T ss_pred H--cCC----HHHHHHHHHHHHHcC-c----hHH--HHHHHHHcCCHHHHHHHHHHcCC
Confidence 4 332 456777776665421 1 111 12234456777777777665554
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=74.01 E-value=22 Score=33.21 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=24.8
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCChhhHHH----hhCCHHHHHHHHHHc
Q 026999 33 LELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 33 ~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----~~Gr~~egi~~le~~ 76 (229)
.+.|++++|.+.++ .++....|..-+ .+|+++.|+..+.++
T Consensus 663 l~~~~~~~A~~~~~---~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLT---DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH---hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 46777777777643 344444554444 566776666666654
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=66.40 E-value=31 Score=34.01 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=63.9
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-C-CHHHHHHHHHHHH--------hhCCCChhhH----------HH---
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGL--------KINKHDCWSQ----------HA--- 61 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-g-~~d~Ae~~a~rAL--------~LnP~dawA~----------Ha--- 61 (229)
+.+++..++....+|.....+...-.+..+. + +=-+|.....++| +++|.+..+. |.
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 3455566665555565443332222222222 2 1223666666666 3456664433 32
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
-+|+++-|+....++.. +.|- -.--|-.||.+|+.+| |||.||-.....
T Consensus 346 FLl~K~~~elAL~~Ak~AV~----~aPs-eF~tW~~La~vYi~l~-d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE----LALD-SFESWYNLARCHIKKE-EYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCSS-CHHHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh----cCch-hhHHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence 58999999999999987 4543 1234558999999997 999999877443
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.32 E-value=23 Score=30.69 Aligned_cols=114 Identities=7% Similarity=-0.065 Sum_probs=74.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhh----CCHHHHHHHHHHch
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHD----CCFKEAVQFMEECS 77 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~----Gr~~egi~~le~~~ 77 (229)
|+.+.++..+...+...|.|.-.-..+-=-|+-+|++++|.+..+-..+++|...-....+. +.....--|--+..
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~~ 90 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 90 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 67788889999999999998876666655799999999999999999999999876554421 11111111111222
Q ss_pred hhccCCCCcchhhh-HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHN-WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~-~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..-..+ +.+. .=+-|+..+..| ++++|.++-+.....
T Consensus 91 P~~~g~~---~~w~~~ll~Al~~~~~G-~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 91 AKVLGEN---EELTKSLVSFNLSMVSQ-DYEQVSELALQIEEL 129 (273)
T ss_dssp EECCCSC---HHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CCCCCCC---HHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhc
Confidence 3222211 1110 012566666665 999999998877544
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.82 E-value=94 Score=31.54 Aligned_cols=184 Identities=11% Similarity=0.051 Sum_probs=109.3
Q ss_pred hCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHH---hhCCC------------------C---hhhHHH-----hhC
Q 026999 14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL---KINKH------------------D---CWSQHA-----HDC 64 (229)
Q Consensus 14 alp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL---~LnP~------------------d---awA~Ha-----~~G 64 (229)
.+|..+.++..-.|+|-++..+|++++|....++|- ..+.. + .+=.|. ..|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 344556677777889999999999999999998872 11111 1 112343 578
Q ss_pred CHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH----HhhchhhccCCCCCchhhhh--hHHHH
Q 026999 65 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY----DNHIWKELEKPDAVHPEVYL--NALGL 138 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~y----d~~i~~~~~~~~~~~~~~~~--Da~sL 138 (229)
.++.++.|...++..=....+-+..-+|=-+=.++++.| +||+|-... |..+...+.+ .....++ +..+.
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~-~ye~Ay~aL~~~pd~~~r~~cLr---~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG-KFDAAHVALMVLSTTPLKKSCLL---DFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC-CSGGGGHHHHHHHHSSSCHHHHH---HHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHhCCChhh
Confidence 899999999988764433333233333333555678887 999986655 2222222210 0111222 45667
Q ss_pred HHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 026999 139 LLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 203 (229)
Q Consensus 139 LwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 203 (229)
|.+|-..|.-.+|.+-....+..... ..+...+-++-|.+=..+.....++.-+-+.+.+...
T Consensus 990 L~~lpf~gl~~~Vd~IL~~kAr~~~~--~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 990 LLNYSMPTLRQDVDNLLERKAFQMIN--VESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hhCCCCccHHHHHHHHHHHHHHhCCc--cccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence 77777766521233333332322211 1122234578888888888888999988888877754
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.17 E-value=48 Score=29.95 Aligned_cols=92 Identities=8% Similarity=-0.032 Sum_probs=68.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hhCCHHHHHHHHHHchhhccC--CCCcchhhhH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HDCCFKEAVQFMEECSSTWSS--CSSFMYTHNW 92 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~Gr~~egi~~le~~~~~w~~--~~~~~~~H~~ 92 (229)
-++--+.+.|+|.+|.+...+.+.--++.-...+- ..|+..++.+.++++...=+. ++|.+.+-+-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 35667889999999999988888754431112222 589999999999888653333 4555566788
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYL-EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l-~~gg~~d~Al~~yd~~i~~ 119 (229)
.--|++|+ ..+ +|.+|-..|-..+..
T Consensus 184 ~~~Gi~~l~~~r-dyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADER-DFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhcc-CHHHHHHHHHHHHhc
Confidence 88999999 887 999999998776544
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=50.32 E-value=14 Score=29.78 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---Chh--------------------------hHHH--hhCCHHHHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCW--------------------------SQHA--HDCCFKEAVQ 71 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~---daw--------------------------A~Ha--~~Gr~~egi~ 71 (229)
.++.++|-++-..|+|.+|+...++||.+... ..- +... ..|++++||.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 47888999999999999999999999876542 110 0111 6999999999
Q ss_pred HHHHc
Q 026999 72 FMEEC 76 (229)
Q Consensus 72 ~le~~ 76 (229)
.|++-
T Consensus 144 ~Le~I 148 (167)
T 3ffl_A 144 ILDGI 148 (167)
T ss_dssp HHHTS
T ss_pred HHhcC
Confidence 99874
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=43.50 E-value=57 Score=32.12 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hhhHHH----hhCCHHHHHHHHHHc
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHA----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--awA~Ha----~~Gr~~egi~~le~~ 76 (229)
+..-+=-|...|+|+-|.+.|++|+.+-|.+ +|+.=+ ..|+++.|+-.|-++
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3333333446899999999999999999998 777777 799999999998887
No 242
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.86 E-value=2.4e+02 Score=28.12 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCCCChhhHHHhhCC-HHHHHHHHHHchhhccCCCCcch
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL-KINKHDCWSQHAHDCC-FKEAVQFMEECSSTWSSCSSFMY 88 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL-~LnP~dawA~Ha~~Gr-~~egi~~le~~~~~w~~~~~~~~ 88 (229)
+...+|..|.++..-.++|-++..+|++++|....+||= .+-+++ .... .++....+..... +.+ .
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~------~~~~~~~~~~~ll~~~e~-----~~~-~ 896 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT------SQFAVLREFQEIAEKYHH-----QNL-L 896 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSC------CSCGGGHHHHHHHHHTTT-----CSH-H
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCc------ccccchhhhhhccCcccc-----cch-h
Confidence 334455556666666677777777777777777766642 111111 1111 1122222222222 212 3
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 89 THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 89 ~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.++|=|..-..-..+ -|+-++......|.-
T Consensus 897 ~~YY~hV~~LFE~~~-a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 897 SCYYLHLSKKLFEES-AYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Confidence 346666665544555 899999999888865
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=34.42 E-value=1.1e+02 Score=26.50 Aligned_cols=123 Identities=9% Similarity=-0.038 Sum_probs=64.5
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhH-HHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNA-LGLLL 140 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da-~sLLw 140 (229)
..|..+++++.++..++ .+|-...+=+-..=|..+. |++++|++-.+....- .+...+....+-++ -+-.+
T Consensus 9 ~~g~L~~al~~~~~~VR----~~P~da~~R~~LfqLLcv~--G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCID--GDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp TTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHHH
Confidence 46777777777777777 3333333321122333344 4888888777655443 11111111001000 01123
Q ss_pred HHhhc-CCcccccccHHHHHHHHHh-hhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCc
Q 026999 141 RVYVR-GELDVFGNRLKVLADCVAD-QANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMI 206 (229)
Q Consensus 141 RL~l~-G~~v~vg~rW~~la~~~~~-~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~ 206 (229)
|-++- |.. .| .+..+..+...++.++...+.|+.+.+.++.+...+.+...+
T Consensus 81 R~~vfaG~~--------------~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 81 RKDFAQGAA--------------TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHTTSCC--------------CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHcCCC--------------CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 33321 211 11 123344456677778888899999999999888877764433
No 244
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.20 E-value=1.1e+02 Score=27.23 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCC-CcchhhhHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCS-SFMYTHNWW 93 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~W 93 (229)
++..+|=-+.++|++++|.+...+.......+..-+.. ..+++..+...+.++.......+ +-....+-=
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556667889999999999999999988877655554 68999999999999865444322 222334434
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
-.|++++..+ +|.+|-..|-..+..
T Consensus 213 ~~gl~~l~~r-~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVR-NFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hHHHHHHHHHHHhcc
Confidence 4788888887 999999988665544
No 245
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.90 E-value=42 Score=24.60 Aligned_cols=71 Identities=13% Similarity=0.007 Sum_probs=43.0
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch---hhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHH
Q 026999 84 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW---KELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLA 159 (229)
Q Consensus 84 ~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~---~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la 159 (229)
+|....|..-=.|-.++..| .||+|++...+... .....+ ......++..|=---.+.-+++ +.+||+..-
T Consensus 10 spLn~AH~~~RrAe~ll~~g-kydeAIech~kAa~yL~eAmklt---qs~qa~~SLqLQrd~HlKQ~~l-iq~r~k~~~ 83 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAG-KYEEAISCHRKATTYLSEAMKLT---ESEQAHLSLELQRDSHMKQLLL-IQERWKRAK 83 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 44556788777888888986 99999998876542 211111 1222334333333333555654 578998764
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=30.48 E-value=2.6e+02 Score=28.94 Aligned_cols=93 Identities=10% Similarity=-0.100 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-----hCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLK-----INKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~-----LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
.++.+=-++..+|++++|.++.++--+ ..|| .....+ ..|+.++|+..+++.... .+.|-..+.|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G~~PDvvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA--GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCcHHHHHH
Confidence 455555588999999999999855332 3443 445555 799999999999988652 12232233332
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
=--+++ ..|...++|.++++.+...++
T Consensus 206 LI~glc--K~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 206 ALQCMG--RQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHH--HHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHHHcCC
Confidence 223444 334235788899988877654
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.93 E-value=1e+02 Score=27.56 Aligned_cols=97 Identities=8% Similarity=-0.090 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhh---hhccc
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQ---ANWYL 170 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~---~~~~~ 170 (229)
-+|-+|++.| ++++|+++|.+.... + . .....+|..-..-|+.+.-. .|..+-....+- .....
T Consensus 136 ~la~~~~~~G-d~~~A~~~~~~~~~~-~---~--~~~~kid~~l~~irl~l~~~------d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 136 NLGEYYAQIG-DKDNAEKTLGKSLSK-A---I--STGAKIDVMLTIARLGFFYN------DQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp HHHHHHHHHC-CCTTHHHHHHHHHHH-H---T--CCCSHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHh-c---C--ChHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhhhcCC
Confidence 4899999997 999999999774433 2 1 23457888888889888744 355555444431 11111
Q ss_pred --cchhhHH--HHHHHhcCCC-cHHHHHHHHHHHHHhh
Q 026999 171 --ECHLDLL--ILWALANTGE-VSKAEDLLKGLKSRHS 203 (229)
Q Consensus 171 --~~F~d~H--~~~al~~ag~-~~~~~~ll~~~~~~~~ 203 (229)
..-+-+. ..+.+...++ .+++..+++....+..
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 1111222 2333333444 4556677777766643
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=27.93 E-value=1.3e+02 Score=24.08 Aligned_cols=43 Identities=19% Similarity=0.075 Sum_probs=21.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKG 48 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rA 48 (229)
.|+.+.+.+.+... ..+..|--+ |=.-...|+++-||+...++
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~L---g~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERL---IQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHH---HHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHH---HHHHHHcCChHHHHHHHHHh
Confidence 47777777776654 112223233 33233456666665555543
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.11 E-value=2.5e+02 Score=20.97 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 31 SLLELG--QMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 31 ~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+|+-+| .+++|...++ =|+.+|. .-++.- .+|+++++..+.+..- |++.- -| +||+.-.
T Consensus 13 AL~gTG~H~HqEA~tIAd-wL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdle-------pw-~ALce~r 80 (115)
T 2uwj_G 13 ALAGSGQHCHEEALCIAE-WLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP--WPALE-------PW-FALCEWH 80 (115)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGH-------HH-HHHHHHH
T ss_pred HHHHccchHHHHHHHHHH-HHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHH-------HH-HHHHHHh
Confidence 566676 6777877754 5777777 444443 6999999999876554 33322 23 6788777
Q ss_pred CCCCHHHHHHHH
Q 026999 102 GHSPMRKVLEIY 113 (229)
Q Consensus 102 ~gg~~d~Al~~y 113 (229)
+| -.+++....
T Consensus 81 lG-l~s~le~rL 91 (115)
T 2uwj_G 81 LG-LGAALDRRL 91 (115)
T ss_dssp TT-CHHHHHHHH
T ss_pred cc-cHHHHHHHH
Confidence 76 666666555
No 250
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.53 E-value=1.2e+02 Score=23.74 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln 52 (229)
.++--.|..|+..|++.+|+++.+++++-+
T Consensus 102 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 102 PLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455556668899999999999999999864
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.30 E-value=2.8e+02 Score=20.76 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 31 SLLELG--QMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 31 ~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+|+-+| .+++|...++ =|+.+|. .-++.- .+|+++++..+.+..- |++.-| | +||+.-.
T Consensus 14 AL~gTG~H~HqEA~tIAd-wL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlep-------w-~ALce~r 81 (116)
T 2p58_C 14 ALIGTGNHYHEEANCIAE-WLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEP-------W-LALCEYR 81 (116)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHH-------H-HHHHHHH
T ss_pred HHHHccchHHHHHHHHHH-HHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHH-------H-HHHHHHh
Confidence 566666 6777877754 5777777 444443 5999999999987654 434222 2 5777667
Q ss_pred CCCCHHHHHHHH
Q 026999 102 GHSPMRKVLEIY 113 (229)
Q Consensus 102 ~gg~~d~Al~~y 113 (229)
+| -.+++....
T Consensus 82 lG-l~s~le~rL 92 (116)
T 2p58_C 82 LG-LGSALESRL 92 (116)
T ss_dssp HT-CHHHHHHHH
T ss_pred cc-cHHHHHHHH
Confidence 75 666665555
Done!