BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027001
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
 pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
           Complexed With Bestatin
          Length = 889

 Score = 26.9 bits (58), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 77  ALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQ 136
           A  R  +C      Y K  LMN   FL+ K E+     L   ++  +D +K +  + H  
Sbjct: 566 AFVRYNSC---TNIYMKQILMNYNEFLKAKNEKLESFQLTPVNAQFIDAIKYLLEDPHAD 622

Query: 137 EPFFSFI 143
             F S+I
Sbjct: 623 AGFKSYI 629


>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
          Length = 895

 Score = 26.9 bits (58), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 77  ALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQ 136
           A  R  +C      Y K  LMN   FL+ K E+     L   ++  +D +K +  + H  
Sbjct: 566 AFVRYNSC---TNIYMKQILMNYNEFLKAKNEKLESFQLTPVNAQFIDAIKYLLEDPHAD 622

Query: 137 EPFFSFI 143
             F S+I
Sbjct: 623 AGFKSYI 629


>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
           Derivative 15
 pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
           Derivative 16
          Length = 891

 Score = 26.9 bits (58), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 77  ALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQ 136
           A  R  +C      Y K  LMN   FL+ K E+     L   ++  +D +K +  + H  
Sbjct: 567 AFVRYNSC---TNIYMKQILMNYNEFLKAKNEKLESFQLTPVNAQFIDAIKYLLEDPHAD 623

Query: 137 EPFFSFI 143
             F S+I
Sbjct: 624 AGFKSYI 630


>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
           Complexed With The Phosphinate Dipeptide Analog
          Length = 890

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 77  ALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQ 136
           A  R  +C      Y K  LMN   FL+ K E+     L   ++  +D +K +  + H  
Sbjct: 567 AFVRYNSC---TNIYMKQILMNYNEFLKAKNEKLESFQLTPVNAQFIDAIKYLLEDPHAD 623

Query: 137 EPFFSFI 143
             F S+I
Sbjct: 624 AGFKSYI 630


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,864
Number of Sequences: 62578
Number of extensions: 225566
Number of successful extensions: 571
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 8
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)