BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027001
         (229 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2
          Length = 4731

 Score = 34.7 bits (78), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 134 HVQEPFFSFIK--DGLETVEGRCTISDYNRCGLCLVVYELNFHNYVF 178
            + EP   F K  D L + EG+  I  YNR    LV +E+ +H   F
Sbjct: 770 RINEPINYFFKNSDILSSTEGKAVIRQYNRIAYVLVEFEVAYHTAWF 816


>sp|Q58720|MOBB_METJA Putative molybdopterin-guanine dinucleotide biosynthesis adapter
           protein OS=Methanocaldococcus jannaschii (strain ATCC
           43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
           GN=mobB PE=3 SV=1
          Length = 234

 Score = 32.0 bits (71), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 13/72 (18%)

Query: 83  NCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVD--ILKAVEFELHVQEPFF 140
           +CG  CRT+ K  +        + E  W   +L KG   +VD  I+ AV F   V +   
Sbjct: 157 HCGYNCRTFVKAVV--------KGEARWDDCVLAKGIKIIVDGKIIPAVPF---VSKIVG 205

Query: 141 SFIKDGLETVEG 152
           S IK  +ET++G
Sbjct: 206 STIKAMIETLKG 217


>sp|A9KJ27|GATB_CLOPH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
           18823 / ISDg) GN=gatB PE=3 SV=1
          Length = 478

 Score = 31.2 bits (69), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 132 ELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLV 167
           E+H++E     + D  E     CT+ DYNRCG+ L+
Sbjct: 121 EIHMEEDAGKLVHDPWED----CTLVDYNRCGVPLI 152


>sp|A1WK56|RPOC_VEREI DNA-directed RNA polymerase subunit beta' OS=Verminephrobacter
           eiseniae (strain EF01-2) GN=rpoC PE=3 SV=1
          Length = 1411

 Score = 30.8 bits (68), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 31/46 (67%)

Query: 92  KKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQE 137
           KK+++M+EE +  +++E   + I   G+  + D+L++++ +L +++
Sbjct: 155 KKLSIMSEEDYEAKRKEYGDEFIAKMGAEGIKDLLESIDIDLSIEK 200


>sp|Q9V6H2|OR49B_DROME Odorant receptor 49b OS=Drosophila melanogaster GN=Or49b PE=2 SV=1
          Length = 375

 Score = 30.4 bits (67), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 167 VVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLR 226
           ++Y+ N   YV   L SFH IF  + Y  +  +G+   +  S M    + +  R + LL 
Sbjct: 20  LLYDKNLRRYVCIGLASFH-IFTQIVYMMSTNEGLTGIIRNSYMLVLWINTVLRAYLLLA 78

Query: 227 DSD 229
           D D
Sbjct: 79  DHD 81


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,017,323
Number of Sequences: 539616
Number of extensions: 3366613
Number of successful extensions: 7094
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7093
Number of HSP's gapped (non-prelim): 5
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)