Query 027001
Match_columns 229
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z0t_A Putative uncharacterize 99.8 1.3E-19 4.3E-24 141.9 3.8 66 130-195 2-76 (109)
2 1xne_A Hypothetical protein PF 99.7 4.2E-19 1.4E-23 139.5 3.6 66 130-195 3-76 (113)
3 3iuw_A Activating signal coint 97.1 0.00015 5.1E-09 54.8 1.5 47 129-176 8-69 (83)
4 1te7_A Hypothetical UPF0267 pr 94.4 0.056 1.9E-06 40.5 4.9 53 132-185 5-69 (103)
5 2dp9_A Hypothetical protein TT 74.0 1.2 4.3E-05 34.3 1.6 27 133-159 11-37 (124)
6 2e5o_A Activating signal coint 60.0 3.8 0.00013 32.9 1.8 27 133-159 10-36 (154)
7 4ham_A LMO2241 protein; struct 41.3 20 0.0007 26.6 3.1 20 69-88 14-33 (134)
8 3k8a_A Putative primosomal rep 28.8 36 0.0012 25.4 2.7 33 142-176 68-101 (103)
9 2xgu_A Relik capsid N-terminal 18.7 70 0.0024 26.4 2.7 23 108-130 20-44 (149)
10 3k29_A Putative uncharacterize 14.9 48 0.0017 27.9 0.9 53 64-117 1-53 (169)
No 1
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=99.77 E-value=1.3e-19 Score=141.85 Aligned_cols=66 Identities=21% Similarity=0.152 Sum_probs=62.1
Q ss_pred hhhcccchhhHHhhhcccceeeeccccccccccC---------CeEEEEEeeeeeccchhhhhhhhccccccccc
Q 027001 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYCF 195 (229)
Q Consensus 130 ~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~~ 195 (229)
.||||||++||++|++|+|||||||+|++|++|+ .++.++|++||+|+||++|+.+++++++.|--
T Consensus 2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~ 76 (109)
T 2z0t_A 2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGV 76 (109)
T ss_dssp EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTC
T ss_pred eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCC
Confidence 4799999999999999999999999999999998 48999999999999999999999999997754
No 2
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=99.75 E-value=4.2e-19 Score=139.48 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=61.9
Q ss_pred hhhcccchhhHHhhhcccceeeeccccccccccC--------CeEEEEEeeeeeccchhhhhhhhccccccccc
Q 027001 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG--------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYCF 195 (229)
Q Consensus 130 ~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk--------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~~ 195 (229)
.+|||||++||++|++|+|||||||+|++|++|+ +++.++|++||.|+||++|+.+++++++.|--
T Consensus 3 ~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~ 76 (113)
T 1xne_A 3 VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDK 76 (113)
T ss_dssp EEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSC
T ss_pred eEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCC
Confidence 4799999999999999999999999999999998 48899999999999999999999999997654
No 3
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=97.08 E-value=0.00015 Score=54.82 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=37.2
Q ss_pred hhhhcccchhhHHhhhcccceeeeccccccccccC---------------CeEEEEEeeeeec
Q 027001 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------------LCLVVYELNFHNY 176 (229)
Q Consensus 129 v~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------------~cL~v~V~~Vr~Y 176 (229)
..+||.++.+||..|++|+||+|.|++|.+|+ ++ +.+.++|..|.-|
T Consensus 8 ~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~~~-vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~ 69 (83)
T 3iuw_A 8 TIHTLKIETEFFKAVKERRKTFEIRKNDRNFQ-VGDILILEEYMNGMYLDDECEAEVIYITDY 69 (83)
T ss_dssp CEEEEEEEHHHHHHHHTTSCCEEEEECCSCCC-TTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred eEEEEEcCHHHHHHHHcCCcEEEEEecccCCC-CCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence 45889999999999999999999999998643 22 3566677777544
No 4
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=94.35 E-value=0.056 Score=40.49 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=39.0
Q ss_pred hcccchhhHHhhhcccceeeeccccccccccCCeE------------EEEEeeeeeccchhhhhhh
Q 027001 132 ELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCL------------VVYELNFHNYVFFFLGSFH 185 (229)
Q Consensus 132 EmhVQEp~fslik~GkKtVEGRLa~eky~rIk~cL------------~v~V~~Vr~Y~SF~e~~~~ 185 (229)
.|...+++..+|.+|+||+.-|...+-+-+.+..+ .++|.+|+ +..|.++...
T Consensus 5 ~i~f~~~~~~~Il~G~KT~T~R~~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee 69 (103)
T 1te7_A 5 DITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK 69 (103)
T ss_dssp SCCCCHHHHHHHHTCCCEEEEECGGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH
T ss_pred EEEEcHHHHHHHHCCCCEEEEeCCCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH
Confidence 36678899999999999999998655455555333 35888887 6677776543
No 5
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=74.05 E-value=1.2 Score=34.28 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=22.2
Q ss_pred cccchhhHHhhhcccceeeeccccccc
Q 027001 133 LHVQEPFFSFIKDGLETVEGRCTISDY 159 (229)
Q Consensus 133 mhVQEp~fslik~GkKtVEGRLa~eky 159 (229)
|-+..||=++|-+|.||+|+|--.-+|
T Consensus 11 LSIkqpyA~lIl~G~K~~E~R~~~t~~ 37 (124)
T 2dp9_A 11 LIVREPYASLIVDGRKVWEIRRRKTRH 37 (124)
T ss_dssp EECCTTHHHHHHTTCCCEEEESSCCCC
T ss_pred EEEecHHHHHHHCCCceEEeeCCCCCC
Confidence 446789999999999999999865444
No 6
>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.04 E-value=3.8 Score=32.92 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=21.7
Q ss_pred cccchhhHHhhhcccceeeeccccccc
Q 027001 133 LHVQEPFFSFIKDGLETVEGRCTISDY 159 (229)
Q Consensus 133 mhVQEp~fslik~GkKtVEGRLa~eky 159 (229)
|-+..||=++|-.|.|+||+|=-.-+|
T Consensus 10 LSirQPwAslIv~G~K~iE~R~W~T~~ 36 (154)
T 2e5o_A 10 LSVHQPWASLLVRGIKRVEGRSWYTPH 36 (154)
T ss_dssp EEECTTHHHHHHHTSCCEEEESSCCCC
T ss_pred EEEeCcHHHHHHcCCceeeccCCcCCC
Confidence 456789999999999999999544333
No 7
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=41.31 E-value=20 Score=26.64 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhcCCcc
Q 027001 69 PLYKRLALALCRSVNCGAFC 88 (229)
Q Consensus 69 PLykrLA~aL~rci~sg~fc 88 (229)
|||+.++..|.+.|.+|.+.
T Consensus 14 PlY~QI~~~i~~~I~~G~l~ 33 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQ 33 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHcCCCC
Confidence 69999999999999999764
No 8
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=28.81 E-value=36 Score=25.39 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=25.7
Q ss_pred hhhcccc-eeeeccccccccccCCeEEEEEeeeeec
Q 027001 142 FIKDGLE-TVEGRCTISDYNRCGLCLVVYELNFHNY 176 (229)
Q Consensus 142 lik~GkK-tVEGRLa~eky~rIk~cL~v~V~~Vr~Y 176 (229)
.++.|.+ .|||||....|+. ..|++-+++|..+
T Consensus 68 ~l~KG~~v~veGrL~~rs~~~--~~lvlhi~~i~~i 101 (103)
T 3k8a_A 68 QYRQGDCATVEGFLAQKSRRS--LMPMLRIQNIKEY 101 (103)
T ss_dssp TTCTTCEEEEEEEEEESSSSC--CCEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEEECccCC--ccEEEEEEEEEEc
Confidence 4666665 5999999999953 3888988888765
No 9
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=18.70 E-value=70 Score=26.41 Aligned_cols=23 Identities=9% Similarity=0.391 Sum_probs=19.1
Q ss_pred HHHHHHHhhcC--hhHHHHHHHhhh
Q 027001 108 EEWSQLILNKG--SSDLVDILKAVE 130 (229)
Q Consensus 108 ~EW~kLI~eKG--~~EL~n~l~~v~ 130 (229)
+-|-|+|.||| +.|.+.|+.+.+
T Consensus 20 naWVKvvEek~f~spEvipmFsAlS 44 (149)
T 2xgu_A 20 AAWLKQVQEHGLTHPATITYFGVIS 44 (149)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHh
Confidence 67999999999 467998877766
No 10
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=14.85 E-value=48 Score=27.94 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCCChHHHHHHHHHHHhhhhcCCccccchhhcccccccchHHHHHHHHHHHhhc
Q 027001 64 GVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNK 117 (229)
Q Consensus 64 GVp~YPLykrLA~aL~rci~sg~fc~t~~~~a~~~e~~~lkqke~EW~kLI~eK 117 (229)
|.|+|||=..|.--= +-++.-----.-..-++-.|-.-|++++++-++..+.+
T Consensus 1 ~m~~yple~~~~~k~-~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~ 53 (169)
T 3k29_A 1 GMVRYPLEPVLSIKK-DRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHY 53 (169)
T ss_dssp -CCCCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999987764321 11211100000112245567777888888888776654
Done!