BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027002
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54TS4|YIPF1_DICDI Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3
SV=1
Length = 347
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 47/215 (21%)
Query: 55 LGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPD 114
L ++ +G E++ + F+ + Y FNVDT V RL S+ P+ FF+ I NPD
Sbjct: 112 LNTNEDGTEKKYS-----FYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRENPD 166
Query: 115 LF-------------------------------------VNVAACTVYGYAIVVPLAYYF 137
L+ + +A T+YGY+ V+PL +
Sbjct: 167 LYGPFWVLTSLVFIVAVTSNLNEYFHSSDHKSWEVDIQKIVYSAITIYGYSFVIPLILWG 226
Query: 138 LLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFN-- 195
+ ++M L+ C++GY+LFIFV S L +IP++L++WII+ +A S F+ N
Sbjct: 227 IFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVTNIF 286
Query: 196 --LKSYMEGNDLTVLVVASFCLQMALAIFIKVWFF 228
LK L + V L + LA+ +K++FF
Sbjct: 287 TPLKEDFTKRGLIICAVIG-ALHIGLALVLKLYFF 320
>sp|Q5RBL0|YIPF1_PONAB Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 52/237 (21%)
Query: 44 NGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLFSSLHPL 101
G G + LG+ + A K F++ Y +F+VDT V +R+ SL P+
Sbjct: 45 RGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPI 104
Query: 102 SGDFFSK--IDANPDLF---------------------------------------VNVA 120
G F + I +NPDL+ V++A
Sbjct: 105 PGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYRYVPEFRKVSIA 164
Query: 121 ACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSFLLLIPIE 174
A T+Y YA +VPLA + L + S S S + C++GYSLFI++ T+ L +IP +
Sbjct: 165 ATTIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQK 224
Query: 175 LLRWIIILLA-GTTSSCFVAFNLKSYMEGNDLTVL--VVASFCLQMALAIFIKVWFF 228
+RWI++++A G + S + E N L +V L M L++ +FF
Sbjct: 225 AVRWILVMIALGISGSVLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281
>sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2 SV=1
Length = 306
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 53/251 (21%)
Query: 31 EAPEATMQTFPPG-NGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDT 87
E P T + P G G + LG+ + A K F++ Y +F+VDT
Sbjct: 31 EDPGETPKHQPGSPRGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDT 90
Query: 88 DIVINRLFSSLHPLSGDFFSK--IDANPDLF----------------------------- 116
V +R+ SL P+ G F + I +NPDL+
Sbjct: 91 YQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIHLGEK 150
Query: 117 ----------VNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLF 160
V++AA +Y YA +VPLA + L + S S S + C++GYSLF
Sbjct: 151 TYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLF 210
Query: 161 IFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQM 217
I++ T+ L +IP + +RWI++++A S +A + E N L +V L M
Sbjct: 211 IYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALATIVTIVLLHM 270
Query: 218 ALAIFIKVWFF 228
L++ +FF
Sbjct: 271 LLSVGCLAYFF 281
>sp|Q91VU1|YIPF1_MOUSE Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1
Length = 306
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 53/243 (21%)
Query: 38 QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLF 95
Q PPG+ G + LG++ + A + F++ Y +F+VDT V +R+
Sbjct: 40 QPRPPGSVGREE-DEELLGNNDSDETELLAGQKRSSPFWTFEYYQTFFDVDTYQVFDRIK 98
Query: 96 SSLHPLSGDFFSK--IDANPDLF------------------------------------- 116
SL P+ G F + I +NPDL+
Sbjct: 99 GSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEF 158
Query: 117 --VNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSFL 168
V++AA +Y YA +VPLA + L + S S S + C++GYSLFI++ T+ L
Sbjct: 159 QKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMSMVSYSFLEIVCVYGYSLFIYIPTAVL 218
Query: 169 LLIPIELLRWIIILLA-GTTSSCFVAFNLKSYMEGNDLTVL--VVASFCLQMALAIFIKV 225
+IP ++RW+++++A G + S V + E N L +V L + L++
Sbjct: 219 WIIPQRVVRWVLVMIALGVSGSVLVMTFWPAVREDNRRVALATIVTIVLLHVLLSVGCLA 278
Query: 226 WFF 228
+FF
Sbjct: 279 YFF 281
>sp|Q6P6G5|YIPF1_RAT Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1
Length = 306
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 53/243 (21%)
Query: 38 QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLF 95
Q PPG+ G + LG++ + A K F++ Y +F+VDT V +R+
Sbjct: 40 QPRPPGSLGREE-DEELLGTNDSDETELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIK 98
Query: 96 SSLHPLSGDFFSK--IDANPDLF------------------------------------- 116
SL P+ G F + I +NPDL+
Sbjct: 99 GSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEF 158
Query: 117 --VNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSFL 168
V++AA +Y YA +VPLA + L + S S S + C++GYSLFI++ T+ L
Sbjct: 159 QKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAVL 218
Query: 169 LLIPIELLRWIIILLA-GTTSSCFVAFNLKSYMEGNDLTVL--VVASFCLQMALAIFIKV 225
+IP ++RW+++ +A G + S + E N L +V L + L++
Sbjct: 219 WIIPQRVIRWVLVTIALGISGSVLAMTFWPAVREDNRRVALATIVTIMLLHVLLSVGCLA 278
Query: 226 WFF 228
+FF
Sbjct: 279 YFF 281
>sp|Q99LP8|YIPF2_MOUSE Protein YIPF2 OS=Mus musculus GN=Yipf2 PE=2 SV=1
Length = 312
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 57/253 (22%)
Query: 10 SSHLLGSVP--AVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPA 67
+++LL P A S+ TS E + + G G G+ G + +S E++P
Sbjct: 15 ATNLLAETPDAATTSQSDELTSREHVAVVVGS---GIGYGAEVGEEEDDKTSLLQEEKPQ 71
Query: 68 NNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLF--------- 116
F++ Y +F+VDT V++R+ SL P G F + + PDL+
Sbjct: 72 PR---FWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATL 128
Query: 117 ------------------------------VNVAACTVYGYAIVVPLAYYFLLQYMGSSA 146
V +A T+Y YA +VPLA + L++ +
Sbjct: 129 AFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGTR 188
Query: 147 SLVRFW------CLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYM 200
+ + C++GYSLF+F+ T L LIP++ ++W+ L S+ + F L +
Sbjct: 189 ERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWIQWLFGALGLALSAAGLVFTLWPVV 248
Query: 201 EGNDLTVLVVASF 213
+ T LV A+
Sbjct: 249 RED--TRLVAAAL 259
>sp|Q9BWQ6|YIPF2_HUMAN Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=2 SV=1
Length = 316
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 49/173 (28%)
Query: 72 GFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLF------------- 116
GF++ S Y +F+VDT V++R+ SL P G F + + PDL+
Sbjct: 76 GFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPDLYGPFWICATLAFVL 135
Query: 117 --------------------------VNVAACTVYGYAIVVPLAYYFLLQY-------MG 143
V VA ++Y YA +VPLA + L++ MG
Sbjct: 136 AVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLALWGFLRWRKGVQERMG 195
Query: 144 SSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL 196
L C++GYSLF+F+ L LIP+ L+W+ LA S+ + F L
Sbjct: 196 PYTFLETV-CIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFTL 247
>sp|Q5XIT3|YIPF2_RAT Protein YIPF2 OS=Rattus norvegicus GN=Yipf2 PE=2 SV=1
Length = 311
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 56/218 (25%)
Query: 10 SSHLLGSVP--AVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPA 67
+++LL P A S+ TS E + + G G G+ G + +S +++P
Sbjct: 15 AANLLAETPDAATTSQSDKLTSQEHVAVVVGS---GIGYGAE-GEEEDDKTSLLQDEKPQ 70
Query: 68 NNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLF--------- 116
F++ Y +F+VDT V++R+ SL P G F + + PDL+
Sbjct: 71 PR---FWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATL 127
Query: 117 ------------------------------VNVAACTVYGYAIVVPLAYYFLLQYMGSSA 146
V +A T+Y YA +VPLA + L++ +
Sbjct: 128 AFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGTR 187
Query: 147 SLVRFW------CLWGYSLFIFVVTSFLLLIPIELLRW 178
+ + C++GYSLF+F+ T L LIP++ L+W
Sbjct: 188 ERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWLQW 225
>sp|Q9UTD3|YIP5_SCHPO Protein YIP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yip5 PE=3 SV=1
Length = 249
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 54/178 (30%)
Query: 28 TSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDT 87
T++EA + Q P ++P L S ++ P W + FNV+T
Sbjct: 16 TTFEAEDLYKQRTPI-----TKPPAPRLQSRRASMQETP---W-------TIKDSFNVET 60
Query: 88 DIVINRLFSSLHPLSGDFFSKIDANPDLF------------------------------- 116
V+ R +L P + +FF +D PDL+
Sbjct: 61 KDVVQRCIHTLIP-TVNFFDVVDDRPDLYGPFWITTTVIQALFFSNSITEYARYATGHGT 119
Query: 117 -------VNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSF 167
+ AA +YGY ++ + + +L + + L+ CL+GY+ +++ S
Sbjct: 120 SGYSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYGYANIVWLPVSL 177
>sp|Q7NN41|ATKA_GLOVI Potassium-transporting ATPase A chain OS=Gloeobacter violaceus
(strain PCC 7421) GN=kdpA PE=3 SV=1
Length = 575
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 42 PGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVI 91
PG G S PG+ L + ANN GF + T ++N+ T +V+
Sbjct: 451 PGLAGNSNPGFHGLTQVVYEYASAAANNGSGFEGLGDATPWWNLSTSVVL 500
>sp|B1JSG7|PUR7_YERPY Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pseudotuberculosis serotype O:3 (strain
YPIII) GN=purC PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|Q668F9|PUR7_YERPS Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pseudotuberculosis serotype I (strain
IP32953) GN=purC PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|A4TMM9|PUR7_YERPP Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pestis (strain Pestoides F) GN=purC PE=3
SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|Q1CK24|PUR7_YERPN Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=purC
PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|A9R2H1|PUR7_YERPG Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pestis bv. Antiqua (strain Angola) GN=purC
PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|Q8ZCD2|PUR7_YERPE Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pestis GN=purC PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|B2K993|PUR7_YERPB Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pseudotuberculosis serotype IB (strain
PB1/+) GN=purC PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|Q1C5Q7|PUR7_YERPA Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=purC
PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|A7FG51|PUR7_YERP3 Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
31758) GN=purC PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 97 SLHPLSGDFFSKIDANPDLFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 145
SL+P D F K DA D VN + C +G+A LA L Y+ +
Sbjct: 112 SLNPPLFDLFLKNDAMHDPMVNESYCKTFGWATEAQLARMKELSYLAND 160
>sp|B7JY03|ATKA_CYAP8 Potassium-transporting ATPase A chain OS=Cyanothece sp. (strain PCC
8801) GN=kdpA PE=3 SV=1
Length = 559
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 26 HATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNV 85
H + P A FP G S PG+ + + ANN GF + T ++N+
Sbjct: 423 HPFAILVPGAITLVFPEILSGISNPGFHGVSQVVYEYASAAANNGSGFEGLGDNTLWWNL 482
Query: 86 DTDIVI 91
T +V+
Sbjct: 483 STSVVL 488
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,352,138
Number of Sequences: 539616
Number of extensions: 3700018
Number of successful extensions: 11889
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11854
Number of HSP's gapped (non-prelim): 38
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)