Query 027002
Match_columns 229
No_of_seqs 135 out of 260
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3114 Uncharacterized conser 100.0 1.3E-42 2.7E-47 311.4 17.0 217 4-229 2-277 (290)
2 KOG2946 Uncharacterized conser 99.1 4.5E-10 9.7E-15 98.1 9.5 135 84-219 68-226 (234)
3 KOG3103 Rab GTPase interacting 99.0 3.5E-09 7.5E-14 93.4 11.3 139 84-223 89-247 (249)
4 PF03878 YIF1: YIF1; InterPro 98.9 1.6E-08 3.4E-13 90.0 10.8 156 66-221 26-237 (240)
5 COG5080 YIP1 Rab GTPase intera 98.7 1.9E-08 4.1E-13 87.4 4.9 135 88-223 70-224 (227)
6 KOG3094 Predicted membrane pro 98.3 1.9E-05 4.1E-10 70.9 13.0 156 67-222 74-281 (284)
7 PF04893 Yip1: Yip1 domain; I 98.2 2.2E-05 4.8E-10 63.3 12.0 76 126-201 75-153 (172)
8 COG5197 Predicted membrane pro 97.9 0.00012 2.7E-09 64.6 10.2 129 71-199 75-244 (284)
9 PF06930 DUF1282: Protein of u 94.9 0.91 2E-05 37.8 12.6 64 138-201 86-149 (170)
10 PF10348 DUF2427: Domain of un 87.1 2.9 6.3E-05 32.7 6.7 53 171-225 48-104 (105)
11 COG0805 TatC Sec-independent p 52.1 1.1E+02 0.0023 27.8 8.7 26 117-142 119-144 (255)
12 PF05924 SAMP: SAMP Motif; In 44.8 17 0.00037 20.5 1.5 18 86-103 1-18 (20)
13 PF10716 NdhL: NADH dehydrogen 27.9 1.8E+02 0.0038 22.1 5.1 48 121-169 22-69 (81)
14 PTZ00359 hypothetical protein; 27.8 93 0.002 30.3 4.4 58 169-226 247-304 (443)
15 PF08611 DUF1774: Fungal prote 25.6 2.6E+02 0.0056 21.9 5.8 30 153-182 25-56 (97)
16 PF08006 DUF1700: Protein of u 21.2 4.5E+02 0.0097 21.7 7.0 19 76-94 26-50 (181)
17 PF14936 p53-inducible11: Tumo 20.3 5.7E+02 0.012 22.1 7.4 75 151-228 93-171 (179)
No 1
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=311.40 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=176.0
Q ss_pred CCCCCCCCCCcCCcCccccCCCccccccCCCCCCcCCCCCCCCCCCC-----------CccCCCCCCCcccCCCCCCccc
Q 027002 4 SYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRP-----------GYQSLGSSSEGFEQQPANNWKG 72 (229)
Q Consensus 4 ~y~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~q~~p~~~~~~~~~-----------~~~~~~~p~~~~~~~~~~~~~~ 72 (229)
++|-++.++.+|++|+.++..+.+.....+ +|+...|+.. |.+.+..++...|||. +.+-+
T Consensus 2 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~sqq~-~~~~~ 73 (290)
T KOG3114|consen 2 NLTFLDFDDVSGGFEDNPDAGGPNVIDTEY-------DPSARSGSTVGGGSDEYNEQGGFDDSKATWLLQSQQV-SDQLS 73 (290)
T ss_pred CcchhhccccccccccCCCCCCCcccCCCC-------CCccCcCCcCCCCcccccccccccCCCcccccccccc-cCCcc
Confidence 467788899999999999887755443322 2222222222 2222222222223333 33348
Q ss_pred ceeeeccccccCCChHHHHHHhhhccccCCCCcccccCCCCCee------------------------------------
Q 027002 73 FFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLF------------------------------------ 116 (229)
Q Consensus 73 ~~si~yYq~yFdVdT~~V~~Rl~~sl~P~~~~f~~~~~~~PDLY------------------------------------ 116 (229)
+|+++||||||||||.||++||++||+| ++.+.+.++.+||||
T Consensus 74 ~~ti~yyq~fFdVDt~qV~~Rl~~SliP-~~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~ 152 (290)
T KOG3114|consen 74 FFTIEYYQPFFDVDTAQVRKRLKESLIP-RNYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYD 152 (290)
T ss_pred cccHHhhccccCCCHHHHHHHHHHhcCC-ccccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecc
Confidence 9999999999999999999999999999 555678899999999
Q ss_pred ---ehhhHHHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 027002 117 ---VNVAACTVYGYAIVVPLAYYFLLQYMGS-----SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTS 188 (229)
Q Consensus 117 ---l~~aa~~~ygY~~lvPl~l~~~lk~~~~-----~~sl~~liclYGYSl~i~IPvs~L~~ip~~~l~Wilv~~g~~~S 188 (229)
+++|++.||+|++++|+++|.+++|++. ..++.|++|+||||+++|||+.+++++|..++||++++.++..|
T Consensus 153 f~~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wvl~~~~~~~S 232 (290)
T KOG3114|consen 153 FGLVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWVLVGTALGLS 232 (290)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999884 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccc-CC---ceeehHHHHHHHHHHHHHHHHHHcCC
Q 027002 189 SCFVAFNLKSYME-GN---DLTVLVVASFCLQMALAIFIKVWFFP 229 (229)
Q Consensus 189 ~~fl~~nL~~~l~-~~---k~~liv~~i~~lH~~lal~~K~yFF~ 229 (229)
+.||..++++..+ .. +....++.++++|+++|+++|+|||+
T Consensus 233 ~~~L~~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~~~~lyfF~ 277 (290)
T KOG3114|consen 233 GTFLAGTLWPAVRLDGILHFAFLLIVEIVLLHLLLALGFKLYFFD 277 (290)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhccceeEEec
Confidence 9999999999986 22 34667788899999999999999995
No 2
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=4.5e-10 Score=98.07 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=106.9
Q ss_pred CCChHHHHHHhhhccccCCCCcc--cccCCCCCee------ehh--------------hHHHHHHHHHHHHHHHHHHHHH
Q 027002 84 NVDTDIVINRLFSSLHPLSGDFF--SKIDANPDLF------VNV--------------AACTVYGYAIVVPLAYYFLLQY 141 (229)
Q Consensus 84 dVdT~~V~~Rl~~sl~P~~~~f~--~~~~~~PDLY------l~~--------------aa~~~ygY~~lvPl~l~~~lk~ 141 (229)
+-|-.+|..|+++.+.|+.- |. .++.+.+||| +.. -.+.+|.-+|.+-+++++..|.
T Consensus 68 krD~~~I~~kl~~Vl~P~py-~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~i~wfG~~vvtln~kL 146 (234)
T KOG2946|consen 68 KRDLRAIGSKLKHVLYPHPY-FEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFAILWFGAVVVTLNIKL 146 (234)
T ss_pred HHHHHHHHhceEEEEccCCC-cccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999741 22 2345667999 111 1334777889999999999999
Q ss_pred hcCCCchHHHHHHHhhhhhHHHHHH-HHhhh-hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceeehHHHHHHHHHHH
Q 027002 142 MGSSASLVRFWCLWGYSLFIFVVTS-FLLLI-PIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMAL 219 (229)
Q Consensus 142 ~~~~~sl~~liclYGYSl~i~IPvs-~L~~i-p~~~l~Wilv~~g~~~S~~fl~~nL~~~l~~~k~~liv~~i~~lH~~l 219 (229)
.|++.+++|.+|+.|||+++....+ ++|.. +...+|-++..+|.+||++.-...+.....+.||.+++.+++.+-+.+
T Consensus 147 LGgnIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l~~~~~~~kk~LavYPvFL~y~~~ 226 (234)
T KOG2946|consen 147 LGGNISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFLSISQLPRKKLLAVYPVFLFYFSV 226 (234)
T ss_pred hCCceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccceehhhHHHHHHhh
Confidence 9999999999999999999999986 56665 567899999999999998887777776666788888888887665433
No 3
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.5e-09 Score=93.40 Aligned_cols=139 Identities=20% Similarity=0.271 Sum_probs=111.9
Q ss_pred CCChHHHHHHhhhccccCCCCcccccCCCCCee------ehhhHHH----------HHHHHHHHHHHHHHHHHHhc-CCC
Q 027002 84 NVDTDIVINRLFSSLHPLSGDFFSKIDANPDLF------VNVAACT----------VYGYAIVVPLAYYFLLQYMG-SSA 146 (229)
Q Consensus 84 dVdT~~V~~Rl~~sl~P~~~~f~~~~~~~PDLY------l~~aa~~----------~ygY~~lvPl~l~~~lk~~~-~~~ 146 (229)
++|-+++.+|.+..|+|+|.. -..+.+++||. +..+.++ |||.+.+..+.++.+++.++ .+.
T Consensus 89 gInf~hI~~KT~~VLnP~r~~-~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi~~~gsl~iy~L~nlm~~~nv 167 (249)
T KOG3103|consen 89 GINFDHIKQKTRAVLNPFRSA-DQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGISLLGSLSIYFLLNLMSNKNV 167 (249)
T ss_pred CCCHHHHHHHHhheecccccC-ceEEecCcccccchHHHHHHHHHHHhcCceEEEEEeeeHHHHHHHHHHHHHHHhhcCc
Confidence 688999999999999999863 15578999999 3333333 67788899999999999998 678
Q ss_pred chHHHHHHHhhhhhHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHHHHhhccccc-CCceeehHHHHHHHHHHHHHHH
Q 027002 147 SLVRFWCLWGYSLFIFVVTSFLLLI-P-IELLRWIIILLAGTTSSCFVAFNLKSYME-GNDLTVLVVASFCLQMALAIFI 223 (229)
Q Consensus 147 sl~~liclYGYSl~i~IPvs~L~~i-p-~~~l~Wilv~~g~~~S~~fl~~nL~~~l~-~~k~~liv~~i~~lH~~lal~~ 223 (229)
++.+..++.|||+.+.+..+.+.++ + ...++.++.+++.+||+..-..-+...++ ++++.++...++.+--+|+++.
T Consensus 168 ~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al~~~~~rlLiaYp~~l~Y~~Fall~ 247 (249)
T KOG3103|consen 168 SFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSALSMENQRLLVAYPCALLYGVFALIV 247 (249)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHhhheeEE
Confidence 9999999999999999999988776 3 35689999999999987766665666565 6777778788888877777653
No 4
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=98.88 E-value=1.6e-08 Score=89.95 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=104.4
Q ss_pred CCCCcccceeeeccccccCCChHHHHHHhhhccccCCCC-cc-----c-----ccC-CCCCeeehh--------------
Q 027002 66 PANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGD-FF-----S-----KID-ANPDLFVNV-------------- 119 (229)
Q Consensus 66 ~~~~~~~~~si~yYq~yFdVdT~~V~~Rl~~sl~P~~~~-f~-----~-----~~~-~~PDLYl~~-------------- 119 (229)
-+++...+.+.+-.|.|||||++=|.+||+--+.|+... .. + +.+ +-||||++.
T Consensus 26 v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~ 105 (240)
T PF03878_consen 26 VQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLIL 105 (240)
T ss_pred HHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHH
Confidence 355666677777899999999999999999999996431 10 0 112 349999222
Q ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHhhhhhHHHHHHHHhhhhHHHHHHHHHHHH
Q 027002 120 -------------AACTVYGYAIVVPLAYYFLLQYMGS--SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLA 184 (229)
Q Consensus 120 -------------aa~~~ygY~~lvPl~l~~~lk~~~~--~~sl~~liclYGYSl~i~IPvs~L~~ip~~~l~Wilv~~g 184 (229)
.++-.....++==+++++.+..++. +.++.|++|.-||..+.-|.+.+...+-..+.-|+..+..
T Consensus 106 G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~~~yy~~~ly~ 185 (240)
T PF03878_consen 106 GLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASLLFGSWVYYIALLYT 185 (240)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2222222222222333444444555 6799999999999988887777776665568889999999
Q ss_pred HHHHHHHHHHhhccccc-------C-------Cce-eehHHHHHHHHHHHHH
Q 027002 185 GTTSSCFVAFNLKSYME-------G-------NDL-TVLVVASFCLQMALAI 221 (229)
Q Consensus 185 ~~~S~~fl~~nL~~~l~-------~-------~k~-~liv~~i~~lH~~lal 221 (229)
.+..+.|+++.++..+- + +|+ .-.+..++++|..++.
T Consensus 186 ~~a~~~Fl~RsLk~~i~~~~~~~~~~~~~~~~~~~r~yfL~~~a~~Q~~l~~ 237 (240)
T PF03878_consen 186 SFANAFFLLRSLKRVILPSPSSSYGSVSSSSQRKRRNYFLFFIAIVQPPLMF 237 (240)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccccceeehhHHHHHHHHHHHHHH
Confidence 99999999999875432 1 122 2344556677776654
No 5
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=98.69 E-value=1.9e-08 Score=87.44 Aligned_cols=135 Identities=24% Similarity=0.331 Sum_probs=100.1
Q ss_pred HHHHHHhhhccccCCCCcccccCCCCCee------------ehhh----HHHHHHHHHHHHHHHHHHHHHhc-CCCchHH
Q 027002 88 DIVINRLFSSLHPLSGDFFSKIDANPDLF------------VNVA----ACTVYGYAIVVPLAYYFLLQYMG-SSASLVR 150 (229)
Q Consensus 88 ~~V~~Rl~~sl~P~~~~f~~~~~~~PDLY------------l~~a----a~~~ygY~~lvPl~l~~~lk~~~-~~~sl~~ 150 (229)
..++++....+.|++..- .++.++.||| ++.+ .+-+|+-.+.+-+.+.+.+|.++ .+.++++
T Consensus 70 ~~i~~ks~~vl~p~~~~~-~~i~~d~DL~gPliF~lL~sLfLsla~~shFgyiy~islfg~lsl~~~lrLl~~~ni~f~~ 148 (227)
T COG5080 70 GHIKSKSDDVLGPFDNKA-FDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYGISLFGTLSLHLLLRLLGHKNISFFS 148 (227)
T ss_pred cccccccceeeecccccc-hhhhhcccccccHHHHHHHHHHHHhcccceeehhhHHHHHHHHHHHHHHHHhccCceeeee
Confidence 455667777778876521 2467899999 2222 23477788888999999999999 5789999
Q ss_pred HHHHHhhhhhHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhccccc-CCceeehHHHHHHHHHHHHHHH
Q 027002 151 FWCLWGYSLFIFVVTSFLLLIP--IELLRWIIILLAGTTSSCFVAFNLKSYME-GNDLTVLVVASFCLQMALAIFI 223 (229)
Q Consensus 151 liclYGYSl~i~IPvs~L~~ip--~~~l~Wilv~~g~~~S~~fl~~nL~~~l~-~~k~~liv~~i~~lH~~lal~~ 223 (229)
.+|+.|||+++.+..+++|.+- +.+.--++++++..||.......+++.++ .+|+.+++..+...--.|++.+
T Consensus 149 ~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l~l~n~~llv~Ypl~LFY~~fa~ii 224 (227)
T COG5080 149 TISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKLQLSNKRLLVVYPLLLFYNVFAIII 224 (227)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhheEEE
Confidence 9999999999999999999873 34455666777888888877777776666 6777777777666555555443
No 6
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=98.27 E-value=1.9e-05 Score=70.90 Aligned_cols=156 Identities=18% Similarity=0.222 Sum_probs=96.3
Q ss_pred CCCcccceeeeccccccCCChHHHHHHhhhccccCCC-Cccc-----------ccCCCCCeeehhhHHHHHH--------
Q 027002 67 ANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSG-DFFS-----------KIDANPDLFVNVAACTVYG-------- 126 (229)
Q Consensus 67 ~~~~~~~~si~yYq~yFdVdT~~V~~Rl~~sl~P~~~-~f~~-----------~~~~~PDLYl~~aa~~~yg-------- 126 (229)
+++..++++..-.+-||+||+.=|++||+--+.|+.. +... .--+.||||+..-+.+-|.
T Consensus 74 ~~~~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lG 153 (284)
T KOG3094|consen 74 EKNLGKYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLG 153 (284)
T ss_pred HHHhhhhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhh
Confidence 4555666666667889999999999999999999743 1111 1235689994333333221
Q ss_pred -----------HHH-------HHHHHHHHHHHH-hcC--CCchHHHHHHHhhhhhHHHHHHHHhhhhHHHHHHHHHHHHH
Q 027002 127 -----------YAI-------VVPLAYYFLLQY-MGS--SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAG 185 (229)
Q Consensus 127 -----------Y~~-------lvPl~l~~~lk~-~~~--~~sl~~liclYGYSl~i~IPvs~L~~ip~~~l~Wilv~~g~ 185 (229)
+.+ ++=+++..+..| .+. +.+.++++|.-||-.+..|.+.+.-.+-..+...++...-.
T Consensus 154 lqg~FsPE~Lg~~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~~yyi~~~yt~ 233 (284)
T KOG3094|consen 154 LQGRFSPEALGILASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPYGYYIALAYTY 233 (284)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecchhHHHHHHHHH
Confidence 111 222222223333 233 67899999999999998888877766644445555555555
Q ss_pred HHHHHHHHHhhccccc------C----C-ceeehHHHHHHHHHHHHHH
Q 027002 186 TTSSCFVAFNLKSYME------G----N-DLTVLVVASFCLQMALAIF 222 (229)
Q Consensus 186 ~~S~~fl~~nL~~~l~------~----~-k~~liv~~i~~lH~~lal~ 222 (229)
+.-+.|+++.++..+- + . |+.-.+..+++.|..++..
T Consensus 234 ~a~gvFLlRSlK~~ll~~~~~~~~v~q~~r~~YfLf~ia~~Q~~~l~w 281 (284)
T KOG3094|consen 234 LAFGVFLLRSLKRALLAESSMADPVPQSSRRLYFLFFIAAVQFLILYW 281 (284)
T ss_pred HHHHHHHHHHHHHHHcCCccccCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 5557888888876542 1 1 2333445556666665543
No 7
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=98.25 E-value=2.2e-05 Score=63.32 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhhhhHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHhhccccc
Q 027002 126 GYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIEL---LRWIIILLAGTTSSCFVAFNLKSYME 201 (229)
Q Consensus 126 gY~~lvPl~l~~~lk~~~~~~sl~~liclYGYSl~i~IPvs~L~~ip~~~---l~Wilv~~g~~~S~~fl~~nL~~~l~ 201 (229)
.-.++.+.++|.+.|.+|++.++.|.+|++|||.++.+...+++.+.... +...+..++.+|+...+..-++..-+
T Consensus 75 i~~~i~~~~~~~~~~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~~~ 153 (172)
T PF04893_consen 75 IGWFILALILHLIAKLFGGKGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREVHR 153 (172)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667888999999999999999999999999999999988888875543 34577788889999888888887766
No 8
>COG5197 Predicted membrane protein [Function unknown]
Probab=97.87 E-value=0.00012 Score=64.58 Aligned_cols=129 Identities=18% Similarity=0.282 Sum_probs=81.1
Q ss_pred ccceeeeccccccCCChHHHHHHhhhccccCCCC-cc-----------cccCCCCCeeehhhHHHHHH------------
Q 027002 71 KGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGD-FF-----------SKIDANPDLFVNVAACTVYG------------ 126 (229)
Q Consensus 71 ~~~~si~yYq~yFdVdT~~V~~Rl~~sl~P~~~~-f~-----------~~~~~~PDLYl~~aa~~~yg------------ 126 (229)
..-.+..-.+-|||||+.-|++|++--+.|+.+. .. ...-+.||+|+..-+.+-|.
T Consensus 75 g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~g~ 154 (284)
T COG5197 75 GNAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKGS 154 (284)
T ss_pred cccccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhcccC
Confidence 3345566688999999999999999999998642 11 01236699994433333221
Q ss_pred -------HH----HHHHHHHHHHHHH------hcCCCchHHHHHHHhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027002 127 -------YA----IVVPLAYYFLLQY------MGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSS 189 (229)
Q Consensus 127 -------Y~----~lvPl~l~~~lk~------~~~~~sl~~liclYGYSl~i~IPvs~L~~ip~~~l~Wilv~~g~~~S~ 189 (229)
|. +.+=++=.++.|. .+...++++++|.-||-.++.|...+.-.+-..|..=++...-.+.-+
T Consensus 155 F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~~Mp~v~~i~~~Ylyiaf~ 234 (284)
T COG5197 155 FNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNVTMPFVLNILIFYLYIAFG 234 (284)
T ss_pred CCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 11 1111111222332 123568899999999998888888877665555554455555555567
Q ss_pred HHHHHhhccc
Q 027002 190 CFVAFNLKSY 199 (229)
Q Consensus 190 ~fl~~nL~~~ 199 (229)
.|+.+.++-.
T Consensus 235 vFLlRSlK~~ 244 (284)
T COG5197 235 VFLLRSLKFN 244 (284)
T ss_pred HHHHHHHHHh
Confidence 8888887643
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=94.86 E-value=0.91 Score=37.78 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=54.3
Q ss_pred HHHHhcCCCchHHHHHHHhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 027002 138 LLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYME 201 (229)
Q Consensus 138 ~lk~~~~~~sl~~liclYGYSl~i~IPvs~L~~ip~~~l~Wilv~~g~~~S~~fl~~nL~~~l~ 201 (229)
+.|-++.+.++-|+.-..||+.++.....++..+|..|+--....++..++...++.-+....+
T Consensus 86 ~~~~~~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~~~l~~~~~~~~~~~~~~Lly~Gv~~~~~ 149 (170)
T PF06930_consen 86 MMKTFGGRPSYKKCLAFAAYAATPLFLGGIVNLYPSLWLTLLVGLIALIYSVYLLYLGVPIFMN 149 (170)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455667889999999999999999999999999988877777788889999999888877665
No 10
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=87.05 E-value=2.9 Score=32.72 Aligned_cols=53 Identities=11% Similarity=0.302 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccc-cC---CceeehHHHHHHHHHHHHHHHHH
Q 027002 171 IPIELLRWIIILLAGTTSSCFVAFNLKSYM-EG---NDLTVLVVASFCLQMALAIFIKV 225 (229)
Q Consensus 171 ip~~~l~Wilv~~g~~~S~~fl~~nL~~~l-~~---~k~~liv~~i~~lH~~lal~~K~ 225 (229)
+|...+.+++.++|.+....+ .+-.|.+ .+ .|...++..+.++|.++++..|+
T Consensus 48 ~~~q~~~~~l~~~g~~~g~~~--~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~~~~ 104 (105)
T PF10348_consen 48 LPVQTVFLVLMILGLFLGSVY--NGSTPDLYPNNAHGKMGWILFVLMIVQVILGVILKL 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556666666665555543 3333334 22 23445667778899999999875
No 11
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=52.11 E-value=1.1e+02 Score=27.80 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=22.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHh
Q 027002 117 VNVAACTVYGYAIVVPLAYYFLLQYM 142 (229)
Q Consensus 117 l~~aa~~~ygY~~lvPl~l~~~lk~~ 142 (229)
+-.+++..|+|-++.|++++++..+-
T Consensus 119 ~LF~~G~~faYfvv~P~~~~F~~~~~ 144 (255)
T COG0805 119 VLFLLGAAFAYFVVFPLVFKFLLSFA 144 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55667778899999999999998875
No 12
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=44.76 E-value=17 Score=20.51 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=11.4
Q ss_pred ChHHHHHHhhhccccCCC
Q 027002 86 DTDIVINRLFSSLHPLSG 103 (229)
Q Consensus 86 dT~~V~~Rl~~sl~P~~~ 103 (229)
|.+|++++++.|-+|.+.
T Consensus 1 d~deiL~~CI~sAmPk~~ 18 (20)
T PF05924_consen 1 DEDEILQECIGSAMPKRR 18 (20)
T ss_dssp --HHHHHHHHHCTS----
T ss_pred CHHHHHHHHHHHhccccc
Confidence 346999999999999764
No 13
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=27.92 E-value=1.8e+02 Score=22.07 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhhhhHHHHHHHHh
Q 027002 121 ACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLL 169 (229)
Q Consensus 121 a~~~ygY~~lvPl~l~~~lk~~~~~~sl~~liclYGYSl~i~IPvs~L~ 169 (229)
+.+-..|..++|++++.=++..=...+.+|-.+.||- .+.|-|-.+++
T Consensus 22 ~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~l-vF~FFPGllL~ 69 (81)
T PF10716_consen 22 AALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFL-VFLFFPGLLLL 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH
Confidence 4445569999999987766544445678899999985 45566655543
No 14
>PTZ00359 hypothetical protein; Provisional
Probab=27.78 E-value=93 Score=30.33 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceeehHHHHHHHHHHHHHHHHHH
Q 027002 169 LLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVW 226 (229)
Q Consensus 169 ~~ip~~~l~Wilv~~g~~~S~~fl~~nL~~~l~~~k~~liv~~i~~lH~~lal~~K~y 226 (229)
|.+|++-.+|+++.++|..-|..+..-+.-.=+..+..-.+..+.+++.++++++-+|
T Consensus 247 CC~pft~~D~vFL~L~G~~vGiLItV~ls~~~~~~~~~~~ly~L~~ll~I~Tv~LL~y 304 (443)
T PTZ00359 247 CCMSFTKCDGVFIFLTGTVVGILITVCLSMFPEIKQYQWTLVGLIAMLYILTVALFLY 304 (443)
T ss_pred EEeeccchhhhHHHHhhhHHHHHHHHHhhhCcccccccchHHHHHHHHHHHHHHHHHH
Confidence 5578888899999999998888876555432222222345567777777777766554
No 15
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=25.59 E-value=2.6e+02 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHhhhhhHHHHHHHHh--hhhHHHHHHHHHH
Q 027002 153 CLWGYSLFIFVVTSFLL--LIPIELLRWIIIL 182 (229)
Q Consensus 153 clYGYSl~i~IPvs~L~--~ip~~~l~Wilv~ 182 (229)
+..|||+....-..-+- ...+-.+||++..
T Consensus 25 ~~~GfslS~L~~slgv~Q~~~kvialQWIFAF 56 (97)
T PF08611_consen 25 YAMGFSLSYLTASLGVGQFFIKVIALQWIFAF 56 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899988776654442 3466778998754
No 16
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.18 E-value=4.5e+02 Score=21.71 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=13.5
Q ss_pred eeccccccCC------ChHHHHHHh
Q 027002 76 ISSYTQYFNV------DTDIVINRL 94 (229)
Q Consensus 76 i~yYq~yFdV------dT~~V~~Rl 94 (229)
++||+.|||- +.+|+.+++
T Consensus 26 l~~Y~e~f~d~~~~G~sEeeii~~L 50 (181)
T PF08006_consen 26 LEYYEEYFDDAGEEGKSEEEIIAEL 50 (181)
T ss_pred HHHHHHHHHHhhhCCCCHHHHHHHc
Confidence 7899999983 456665554
No 17
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=20.35 E-value=5.7e+02 Score=22.11 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred HHHHHhhhhhHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHHhhcccccCCceeehHHHHHHHHHHHHHHHHHH
Q 027002 151 FWCLWGYSLFIFVVTSFLLLI-P---IELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVW 226 (229)
Q Consensus 151 liclYGYSl~i~IPvs~L~~i-p---~~~l~Wilv~~g~~~S~~fl~~nL~~~l~~~k~~liv~~i~~lH~~lal~~K~y 226 (229)
.+=+||=+++.+ ..+.|.. + --.+||.+..=+...+..|++..+- ..+-..+......+.+.|+.|+++=..|
T Consensus 93 ~vRlyGgAL~s~--aLi~w~~l~t~ek~iIrwtLL~ea~y~~vq~~vtt~t-~~e~~~~s~~~~llLisr~lf~liS~yy 169 (179)
T PF14936_consen 93 PVRLYGGALLSI--ALIFWNALYTAEKAIIRWTLLSEACYFGVQFLVTTAT-LAEMGWLSNAALLLLISRLLFALISMYY 169 (179)
T ss_pred eehhhhHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 345677666543 3444443 2 2467999988887777777775554 2222333334455667788887776666
Q ss_pred cC
Q 027002 227 FF 228 (229)
Q Consensus 227 FF 228 (229)
|+
T Consensus 170 Yy 171 (179)
T PF14936_consen 170 YY 171 (179)
T ss_pred HH
Confidence 54
Done!