Query 027002
Match_columns 229
No_of_seqs 135 out of 260
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xvc_A ESCRT-III, SSO0910; cel 16.6 34 0.0012 23.4 0.3 26 70-95 22-47 (59)
2 1wi9_A Protein C20ORF116 homol 15.4 67 0.0023 22.7 1.6 25 72-96 20-44 (72)
3 2kih_A Matrix protein 2; S31N, 11.9 1.8E+02 0.0063 18.3 2.7 17 211-227 15-31 (43)
4 1wn9_A The hypothetical protei 9.5 89 0.003 24.5 0.8 32 72-103 92-123 (131)
5 2ljb_A M2 protein, BM2 protein 8.4 2.3E+02 0.0077 17.2 2.1 17 211-227 15-31 (35)
6 2knc_A Integrin alpha-IIB; tra 8.2 3.4E+02 0.012 17.9 3.2 15 215-229 26-40 (54)
7 1wh6_A CUT-like 2, homeobox pr 6.9 1.8E+02 0.0062 21.6 1.5 17 83-99 15-31 (101)
8 3si5_X Protein CASC5; BUBR1-bl 6.8 2.2E+02 0.0076 15.8 1.4 12 85-96 11-22 (24)
9 2k1a_A Integrin alpha-IIB; sin 6.4 4.2E+02 0.014 16.5 2.8 15 215-229 24-38 (42)
10 1yb3_A Hypothetical protein; s 6.2 2.7E+02 0.0091 22.8 2.2 23 75-97 118-140 (175)
No 1
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=16.61 E-value=34 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.0
Q ss_pred cccceeeeccccccCCChHHHHHHhh
Q 027002 70 WKGFFSISSYTQYFNVDTDIVINRLF 95 (229)
Q Consensus 70 ~~~~~si~yYq~yFdVdT~~V~~Rl~ 95 (229)
.+|+..+++....|.|+-++|.+=|+
T Consensus 22 sGGildI~~~a~kygV~kdeV~~~Lr 47 (59)
T 2xvc_A 22 NGGFLDIEHFSKVYGVEKQEVVKLLE 47 (59)
T ss_dssp TTSEEEHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCEEeHHHHHHHhCCCHHHHHHHHH
Confidence 46899999999999999999965443
No 2
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=15.41 E-value=67 Score=22.73 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=20.3
Q ss_pred cceeeeccccccCCChHHHHHHhhh
Q 027002 72 GFFSISSYTQYFNVDTDIVINRLFS 96 (229)
Q Consensus 72 ~~~si~yYq~yFdVdT~~V~~Rl~~ 96 (229)
.+-.++-...=|++.|.++.+||..
T Consensus 20 Kvv~LedLA~~F~l~t~~~i~RI~~ 44 (72)
T 1wi9_A 20 KVVLLEDLAFQMGLRTQDAINRIQD 44 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHH
T ss_pred CeeeHHHHHHHhCCChHHHHHHHHH
Confidence 3455666777899999999999976
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=11.87 E-value=1.8e+02 Score=18.26 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHc
Q 027002 211 ASFCLQMALAIFIKVWF 227 (229)
Q Consensus 211 ~i~~lH~~lal~~K~yF 227 (229)
++..+|+++.++=+++|
T Consensus 15 iiGIlHLiLwildRlff 31 (43)
T 2kih_A 15 IIGILHLILWILDRLFF 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56779999999877765
No 4
>1wn9_A The hypothetical protein (TT1805); thermus thermophillus, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus} SCOP: d.319.1.1 PDB: 1wna_A
Probab=9.51 E-value=89 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=28.7
Q ss_pred cceeeeccccccCCChHHHHHHhhhccccCCC
Q 027002 72 GFFSISSYTQYFNVDTDIVINRLFSSLHPLSG 103 (229)
Q Consensus 72 ~~~si~yYq~yFdVdT~~V~~Rl~~sl~P~~~ 103 (229)
...+-+-|+.-|+.+.++..+||..+-+|..+
T Consensus 92 aVl~p~e~~~ll~~p~~~~~rrl~A~aNPtDP 123 (131)
T 1wn9_A 92 AVVSPGEMTALLDLPPEELLKRVMAIANPTDP 123 (131)
T ss_dssp EEECGGGHHHHHTSCHHHHHHHHHHHCEECCG
T ss_pred hccCHHHHHHHHcCCcHHHHHHHHhhcCCCCc
Confidence 56778889999999999999999999999754
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=8.42 E-value=2.3e+02 Score=17.21 Aligned_cols=17 Identities=6% Similarity=-0.302 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHc
Q 027002 211 ASFCLQMALAIFIKVWF 227 (229)
Q Consensus 211 ~i~~lH~~lal~~K~yF 227 (229)
++..+|+++.+.=+++|
T Consensus 15 IigiLHlilWildrLff 31 (35)
T 2ljb_A 15 IIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 46779999998777665
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.18 E-value=3.4e+02 Score=17.89 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHcCC
Q 027002 215 LQMALAIFIKVWFFP 229 (229)
Q Consensus 215 lH~~lal~~K~yFF~ 229 (229)
+-++..++.|.-||+
T Consensus 26 L~li~~~LwK~GFFk 40 (54)
T 2knc_A 26 LTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCccc
Confidence 344445666777774
No 7
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=6.92 E-value=1.8e+02 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=15.1
Q ss_pred cCCChHHHHHHhhhccc
Q 027002 83 FNVDTDIVINRLFSSLH 99 (229)
Q Consensus 83 FdVdT~~V~~Rl~~sl~ 99 (229)
=++||.+|.+||+.-|.
T Consensus 15 ~~lDTk~I~~~ike~L~ 31 (101)
T 1wh6_A 15 REVDTLELTRQVKEKLA 31 (101)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 56999999999999885
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=6.81 E-value=2.2e+02 Score=15.83 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=9.0
Q ss_pred CChHHHHHHhhh
Q 027002 85 VDTDIVINRLFS 96 (229)
Q Consensus 85 VdT~~V~~Rl~~ 96 (229)
++.+|+++||+.
T Consensus 11 infndFIKRLK~ 22 (24)
T 3si5_X 11 IDFNDFIKRLKT 22 (26)
T ss_pred ccHHHHHHHHhc
Confidence 566788888864
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.41 E-value=4.2e+02 Score=16.52 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHcCC
Q 027002 215 LQMALAIFIKVWFFP 229 (229)
Q Consensus 215 lH~~lal~~K~yFF~ 229 (229)
+-++..++.|.=||+
T Consensus 24 L~li~~~LwK~GFFk 38 (42)
T 2k1a_A 24 LTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHcCccc
Confidence 334445556777774
No 10
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=6.23 E-value=2.7e+02 Score=22.77 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.1
Q ss_pred eeeccccccCCChHHHHHHhhhc
Q 027002 75 SISSYTQYFNVDTDIVINRLFSS 97 (229)
Q Consensus 75 si~yYq~yFdVdT~~V~~Rl~~s 97 (229)
--++|...++...++|.+||+.|
T Consensus 118 L~DfyN~~~p~~~deI~~~I~~S 140 (175)
T 1yb3_A 118 LEDFYNFEHPISGDEVWDRIVNS 140 (175)
T ss_dssp TCEEEETTSCCCHHHHHHHHHTS
T ss_pred HHHhccccCCCCHHHHHHHHhcC
Confidence 45788888999999999999987
Done!