Query 027002
Match_columns 229
No_of_seqs 135 out of 260
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 05:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027002.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027002hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wh8a_ a.35.1.7 (A:) Homeobox 19.4 17 0.0013 26.0 1.2 16 84-99 26-41 (111)
2 d1wi9a_ a.4.5.47 (A:) Hypothet 14.1 36 0.0026 22.5 1.6 25 72-96 20-44 (72)
3 d1s7ea2 a.35.1.7 (A:6-85) Hepa 11.8 37 0.0027 22.7 1.2 17 84-100 1-17 (80)
4 d1wdka2 a.100.1.3 (A:621-715) 9.8 49 0.0036 22.2 1.3 16 84-99 1-16 (95)
5 d1x2la1 a.35.1.7 (A:9-95) Home 9.7 55 0.004 22.2 1.5 16 84-99 8-23 (87)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 8.1 1E+02 0.0074 17.4 1.9 14 158-171 12-25 (36)
7 d1knva_ c.52.1.7 (A:) Restrict 7.7 90 0.0065 25.4 2.2 37 79-116 109-145 (290)
8 d1ldja1 a.4.5.34 (A:687-776) A 6.9 1.5E+02 0.011 19.6 2.7 36 78-116 51-86 (90)
9 d1wh6a_ a.35.1.7 (A:) Homeobox 6.5 92 0.0067 21.6 1.5 18 82-99 14-31 (101)
10 d1iuya_ a.4.5.34 (A:) Cullin-3 6.2 1.7E+02 0.013 19.2 2.8 37 77-116 52-88 (92)
No 1
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.43 E-value=17 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.5
Q ss_pred CCChHHHHHHhhhccc
Q 027002 84 NVDTDIVINRLFSSLH 99 (229)
Q Consensus 84 dVdT~~V~~Rl~~sl~ 99 (229)
++||.++.+||+.-|.
T Consensus 26 eLDT~~Ia~~v~~~L~ 41 (111)
T d1wh8a_ 26 ELDTYSITKRVKEVLT 41 (111)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5999999999999884
No 2
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.11 E-value=36 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=20.6
Q ss_pred cceeeeccccccCCChHHHHHHhhh
Q 027002 72 GFFSISSYTQYFNVDTDIVINRLFS 96 (229)
Q Consensus 72 ~~~si~yYq~yFdVdT~~V~~Rl~~ 96 (229)
.+-.++-...-|++.|+|+.+||..
T Consensus 20 Kvv~LedLAa~F~lktqd~i~RIq~ 44 (72)
T d1wi9a_ 20 KVVLLEDLAFQMGLRTQDAINRIQD 44 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHH
T ss_pred CEeeHHHHHHHcCCcHHHHHHHHHH
Confidence 3456677788899999999999975
No 3
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.84 E-value=37 Score=22.73 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCChHHHHHHhhhcccc
Q 027002 84 NVDTDIVINRLFSSLHP 100 (229)
Q Consensus 84 dVdT~~V~~Rl~~sl~P 100 (229)
++||.++.+||+..|.=
T Consensus 1 eldT~~I~~~i~~eL~~ 17 (80)
T d1s7ea2 1 EINTKEVAQRITTELKR 17 (80)
T ss_dssp CCCSHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999998853
No 4
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=9.85 E-value=49 Score=22.15 Aligned_cols=16 Identities=25% Similarity=0.408 Sum_probs=12.1
Q ss_pred CCChHHHHHHhhhccc
Q 027002 84 NVDTDIVINRLFSSLH 99 (229)
Q Consensus 84 dVdT~~V~~Rl~~sl~ 99 (229)
|++.+||.+||...++
T Consensus 1 ~~~d~~IvnRll~~~~ 16 (95)
T d1wdka2 1 DVTDEDIINWMMIPLC 16 (95)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5678888888887664
No 5
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.73 E-value=55 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.4
Q ss_pred CCChHHHHHHhhhccc
Q 027002 84 NVDTDIVINRLFSSLH 99 (229)
Q Consensus 84 dVdT~~V~~Rl~~sl~ 99 (229)
++||.|+.+||+..|.
T Consensus 8 ~ldT~~i~~~v~~~L~ 23 (87)
T d1x2la1 8 QLDTAEIAFQVKEQLL 23 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999999884
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.14 E-value=1e+02 Score=17.43 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHhhh
Q 027002 158 SLFIFVVTSFLLLI 171 (229)
Q Consensus 158 Sl~i~IPvs~L~~i 171 (229)
.+++.||.+++.++
T Consensus 12 ~LFilvPt~FLliL 25 (36)
T d2axtm1 12 ALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 46778887777655
No 7
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.67 E-value=90 Score=25.36 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=31.1
Q ss_pred cccccCCChHHHHHHhhhccccCCCCcccccCCCCCee
Q 027002 79 YTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLF 116 (229)
Q Consensus 79 Yq~yFdVdT~~V~~Rl~~sl~P~~~~f~~~~~~~PDLY 116 (229)
+++-|+=++.|++..+.+++.|++.. ++-+..|||+=
T Consensus 109 ~~~L~~~e~~e~i~~~~a~l~~~k~~-v~LiTSnPD~v 145 (290)
T d1knva_ 109 FRKIFDNETREKLHQLEKSLLTHKQQ-VRLITSNPDLL 145 (290)
T ss_dssp GGGGBCHHHHHHHHHHHHHHHSSSSC-CBCCCCCCSEE
T ss_pred HHHHhhHHHHHHHHHHHHhhhhhccc-cccccCCCceE
Confidence 67788889999999999999998764 45678889986
No 8
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.89 E-value=1.5e+02 Score=19.60 Aligned_cols=36 Identities=11% Similarity=0.319 Sum_probs=24.5
Q ss_pred ccccccCCChHHHHHHhhhccccCCCCcccccCCCCCee
Q 027002 78 SYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLF 116 (229)
Q Consensus 78 yYq~yFdVdT~~V~~Rl~~sl~P~~~~f~~~~~~~PDLY 116 (229)
-.++-|.++..++.+||- .|+= .+|.++..++++.|
T Consensus 51 ~l~~~F~p~~~~iK~~Ie-~LIe--reYi~R~~~~~~~y 86 (90)
T d1ldja1 51 QLSSRFKPRVPVIKKCID-ILIE--KEYLERVDGEKDTY 86 (90)
T ss_dssp HHTTTCCCCHHHHHHHHH-HHHH--TTSEEECSSSTTEE
T ss_pred HHhccCCCCHHHHHHHHH-HHHh--hHHHhcCCCCCcee
Confidence 456679999988877763 3432 24666666788887
No 9
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.50 E-value=92 Score=21.57 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.5
Q ss_pred ccCCChHHHHHHhhhccc
Q 027002 82 YFNVDTDIVINRLFSSLH 99 (229)
Q Consensus 82 yFdVdT~~V~~Rl~~sl~ 99 (229)
|=++||.++.+||+.-|.
T Consensus 14 ~~~ldT~~I~~~v~~eL~ 31 (101)
T d1wh6a_ 14 YREVDTLELTRQVKEKLA 31 (101)
T ss_dssp HSCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHH
Confidence 347999999999999885
No 10
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.15 E-value=1.7e+02 Score=19.17 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=25.3
Q ss_pred eccccccCCChHHHHHHhhhccccCCCCcccccCCCCCee
Q 027002 77 SSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLF 116 (229)
Q Consensus 77 ~yYq~yFdVdT~~V~~Rl~~sl~P~~~~f~~~~~~~PDLY 116 (229)
+-.++-|.++..++.++|- .|+= .+|.++..++++.|
T Consensus 52 ~~l~~~F~p~~~~iK~~Ie-~LIe--keYi~R~~~d~~~y 88 (92)
T d1iuya_ 52 QQLKARFLPSPVVIKKRIE-GLIE--REYLARTPEDRKVY 88 (92)
T ss_dssp HHTCSSCCCCHHHHHHHHH-HHHH--TTSEEECSSCSSEE
T ss_pred HHHhCcCCCCHHHHHHHHH-HHHh--hhhhhcCCCCCCee
Confidence 4557789999988887774 3332 24666666778887
Done!