BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027005
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RFS|A Chain A, Rieske Soluble Fragment From Spinach
Length = 139
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/138 (84%), Positives = 129/138 (93%)
Query: 92 FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLAS 151
F PPG G+ GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA+
Sbjct: 1 FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLAT 60
Query: 152 YGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 211
+GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH +V++GKVV
Sbjct: 61 FGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVV 120
Query: 212 FVPWTETDFRTGEAPWWA 229
FVPWTETDFRTGEAPWW+
Sbjct: 121 FVPWTETDFRTGEAPWWS 138
>pdb|2ZT9|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|D Chain D, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 179
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/170 (64%), Positives = 128/170 (75%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKF 69
Query: 120 LNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCH 179
L +H GDRTL +GLKGDPTY+VVE + + YGINAVCTHLGCVVPWN+AENKF CPCH
Sbjct: 70 LESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCH 129
Query: 180 GSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229
GSQY+ G+VVRGPAP SLAL+HA EN K+V WTETDFRTGE PWW+
Sbjct: 130 GSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|D Chain D, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
Length = 179
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 127/170 (74%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G+ GGGTTAKD +GN++ + +
Sbjct: 10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKF 69
Query: 120 LNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCH 179
L +H GDR L +GLKGDPTY+VVE + + YGINAVCTHLGCVVPWN+AENKF CPCH
Sbjct: 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCH 129
Query: 180 GSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229
GSQY+ GRV+RGPAPLSLAL HA V++ +V PWTETDFRTGE PWW
Sbjct: 130 GSQYDETGRVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWWV 179
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|D Chain D, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 179
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/170 (62%), Positives = 127/170 (74%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G+ GGGTTAKD +GN++ + +
Sbjct: 10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKF 69
Query: 120 LNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCH 179
L +H GDR L +GLKGDPTY+VVE + + YGINAVCTHLGCVVPWN+AENKF CPCH
Sbjct: 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCH 129
Query: 180 GSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229
GSQY+ G+V+RGPAPLSLAL HA V++ +V PWTETDFRTGE PWW
Sbjct: 130 GSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWWV 179
>pdb|1Q90|C Chain C, Structure Of The Cytochrome B6f (Plastohydroquinone :
Plastocyanin Oxidoreductase) From Chlamydomonas
Reinhardtii
Length = 127
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 91/125 (72%), Positives = 104/125 (83%), Gaps = 1/125 (0%)
Query: 106 AKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVV 165
AKDA+GNDI A +WL TH GDR+L++GLKGDPTYL+V D T+ YG+NAVCTHLGCVV
Sbjct: 3 AKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVV 62
Query: 166 PWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGE 224
PW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH +V E+G V F WTETDFRTG
Sbjct: 63 PWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVTFSTWTETDFRTGL 122
Query: 225 APWWA 229
PWWA
Sbjct: 123 EPWWA 127
>pdb|3AZC|A Chain A, Crystal Structure Of The Soluble Part Of Cytochrome B6f
Complex Iron- Sulfur Subunit From Thermosynechococcus
Elongatus Bp-1
Length = 133
Score = 193 bits (490), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Query: 102 GGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHL 161
G AKDA+GNDI +++L H PGDR+L +G+KGDPTY++V +D +A+YG+NAVCTHL
Sbjct: 5 GRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHL 64
Query: 162 GCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDF 220
GCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL A V E+ K+VF PWTE DF
Sbjct: 65 GCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDF 124
Query: 221 RTGEAPWW 228
RTG+ PWW
Sbjct: 125 RTGKEPWW 132
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 157 VCTHLGCVVPWNSAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFV 213
VCTHLGCV N+ + + CPCHGS Y+ GR+ +GPAPL+L + + +V V
Sbjct: 138 VCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIV 195
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
pdb|1BGY|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|Q Chain Q, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|E Chain E, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|E Chain E, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|E Chain E, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|E Chain E, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|EE Chain e, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 196
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 157 VCTHLGCVVPWNSAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFV 213
VCTHLGCV N+ + + CPCHGS Y+ GR+ +GPAPL+L + + +V V
Sbjct: 138 VCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIV 195
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske Iron-
Sulfur Protein Of The Bovine Heart Mitochondrial
Cytochrome Bc1-complex
Length = 129
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 157 VCTHLGCVVPWNSAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFV 213
VCTHLGCV N+ + + CPCHGS Y+ GR+ +GPAPL+L + + +V V
Sbjct: 71 VCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIV 128
>pdb|1EZV|E Chain E, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|E Chain E, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|P Chain P, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|E Chain E, Yeast Cytochrome Bc1 Complex
pdb|1P84|E Chain E, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|E Chain E, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|E Chain E, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|P Chain P, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|E Chain E, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|P Chain P, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 185
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 157 VCTHLGCVVPWNSAEN--KFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 211
+CTHLGCV P A + + CPCHGS Y+ GR+ +GPAPL+L + + KV+
Sbjct: 128 ICTHLGCV-PIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVI 183
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 157 VCTHLGCVVPWNSAE-NKFICPCHGSQYNNQGRVVRGPAPLSLAL 200
VCTHLGCV NS + + CPCHGS Y+ GR+ +GPAP +L +
Sbjct: 138 VCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEV 182
>pdb|2YIU|C Chain C, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|F Chain F, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 190
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 157 VCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPLSLAL 200
VCTHLGCV P F CPCHGS Y+ GR+ RGPAP +L +
Sbjct: 131 VCTHLGCV-PIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQNLHI 176
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|R Chain R, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 191
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 157 VCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPLSLAL 200
VCTHLGCV P F CPCHGS Y++ GR+ +GPAP +L +
Sbjct: 132 VCTHLGCV-PMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDI 177
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From
Rhodobacter Sphaeroides
Length = 141
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHGS Y++ GR+ +GPAP
Sbjct: 65 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE 123
Query: 197 SLAL 200
+L +
Sbjct: 124 NLPI 127
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|F Chain F, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|I Chain I, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|L Chain L, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 179
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHGS Y++ GR+ +GPAP
Sbjct: 103 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE 161
Query: 197 SLAL 200
+L +
Sbjct: 162 NLPI 165
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHG+ Y++ GR+ +GPAP
Sbjct: 65 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGTHYDSAGRIRKGPAPE 123
Query: 197 SLAL 200
+L +
Sbjct: 124 NLPI 127
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHG+ Y++ GR+ +GPAP
Sbjct: 65 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGAHYDSAGRIRKGPAPE 123
Query: 197 SLAL 200
+L +
Sbjct: 124 NLPI 127
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHGS +++ GR+ +GPAP
Sbjct: 65 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGSHFDSAGRIRKGPAPE 123
Query: 197 SLAL 200
+L +
Sbjct: 124 NLPI 127
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHGS +++ GR+ +GPAP
Sbjct: 65 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPE 123
Query: 197 SLAL 200
+L +
Sbjct: 124 NLPI 127
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGCV P F CPCHG Y++ GR+ +GPAP
Sbjct: 65 DQNRTLDEAGEWLVMWGVCTHLGCV-PIGGVSGDFGGWFCPCHGCHYDSAGRIRKGPAPE 123
Query: 197 SLAL 200
+L +
Sbjct: 124 NLPI 127
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|F Chain F, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|I Chain I, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|L Chain L, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|O Chain O, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|R Chain R, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|I Chain I, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|L Chain L, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|O Chain O, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|R Chain R, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 187
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGC P F CPCHGS Y++ GR+ +GPAP
Sbjct: 111 DQNRTLDEAGEWLVMWGVCTHLGCS-PIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE 169
Query: 197 SLAL 200
+L +
Sbjct: 170 NLPI 173
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|F Chain F, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|I Chain I, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|L Chain L, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|O Chain O, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|R Chain R, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 179
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 144 EKDKTLASYG----INAVCTHLGCVVPWNSAENKF---ICPCHGSQYNNQGRVVRGPAPL 196
++++TL G + VCTHLGC P F CPCHGS Y++ GR+ +GPAP
Sbjct: 103 DQNRTLDEAGEWLVMWGVCTHLGCS-PIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE 161
Query: 197 SLAL 200
+L +
Sbjct: 162 NLPI 165
>pdb|1NYK|A Chain A, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
pdb|1NYK|B Chain B, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
Length = 165
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 137 DPTYLVVEKDKTLAS--YGINAVCTHLGCVVP-WNSAENKFICPCHGSQYN--NQGRVVR 191
DP L E + A +AVCTHLGC+V W + E +CPCHG Y+ + +V+
Sbjct: 64 DPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIA 123
Query: 192 GPAPLSLALAHANVENGKVV 211
GP P + VE+G +V
Sbjct: 124 GPPPRPVPQLPVRVEDGVLV 143
>pdb|3FOU|A Chain A, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
pdb|3FOU|B Chain B, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
Length = 156
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 137 DPTYLVVEKDKTLAS--YGINAVCTHLGCVVP-WNSAENKFICPCHGSQYN--NQGRVVR 191
DP L E + A +AVCTHLGC+V W + E +CPCHG Y+ + +V+
Sbjct: 64 DPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIA 123
Query: 192 GPAPLSLALAHANVENGKVV 211
GP P + VE+G +V
Sbjct: 124 GPPPRPVPQLPVRVEDGVLV 143
>pdb|1G8K|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|D Chain D, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|F Chain F, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|H Chain H, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 133
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 143 VEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ--GRVVRGPAPLSL 198
V D + +Y + +CTH+GC ++S+ F CPCH ++++ + G+++ G A L
Sbjct: 47 VGPDDDIVAYSV--LCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADL 102
>pdb|1G8J|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|D Chain D, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 133
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 143 VEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ--GRVVRGPAPLSL 198
V D + +Y + +CTH+GC ++S+ F CPCH ++++ + G+++ G A L
Sbjct: 47 VGPDDDIVAYSV--LCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADL 102
>pdb|1Q90|R Chain R, Structure Of The Cytochrome B6f (Plastohydroquinone :
Plastocyanin Oxidoreductase) From Chlamydomonas
Reinhardtii
Length = 49
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP 95
+ VPDM KR +MNL+L G LP + + Y FF PP
Sbjct: 3 SSEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPP 41
>pdb|1JM1|A Chain A, Crystal Structure Of The Soluble Domain Of The Rieske
Protein Ii (Soxf) From Sulfolobus Acidocaldarius
Length = 204
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 152 YGINAVCTHLGCVVPWN---SAEN---------KFICPCHGSQY--NNQGRVVRGPAPLS 197
+ + VC HLGC +P S+E+ CPCHGS Y + G VV GPAP
Sbjct: 88 FAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRP 147
Query: 198 LAL 200
L +
Sbjct: 148 LPI 150
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 114 IIAADWL------NTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPW 167
+ A WL PGD +T + DP +V +KD ++A + +N C H G +
Sbjct: 49 VFARSWLLLGHETQIRKPGD-YITTYMGEDPVVVVRQKDASIAVF-LNQ-CRHRGMRICR 105
Query: 168 NSAENK--FICPCHGSQYNNQGRVVRGP 193
A N F C HG Y+ G +V P
Sbjct: 106 ADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 137 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENK--FICPCHGSQYNNQGRVVRGP 193
DP +V +KDK++ + +N C H G + + A N F C HG Y+ G++V P
Sbjct: 81 DPVVMVRQKDKSIKVF-LNQ-CRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 137 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENK--FICPCHGSQYNNQGRVVRGP 193
DP +V +KDK++ + +N C H G + + A N F C HG Y+ G++V P
Sbjct: 81 DPVVMVRQKDKSIKVF-LNQ-CRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 137 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENK--FICPCHGSQYNNQGRVVRGP 193
DP +V +KDK++ + +N C H G + + A N F C HG Y+ G++V P
Sbjct: 81 DPVVMVRQKDKSIKVF-LNQ-CRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 130 LTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAEN--KFICPCHGSQYNNQG 187
LT + DP +V +KD+++ + +N C H G + + N F C HG Y+ G
Sbjct: 75 LTTYMGEDPVIVVRQKDRSIKVF-LNQ-CRHRGMRIERSDFGNAKSFTCTYHGWAYDTAG 132
Query: 188 RVVRGP 193
+V P
Sbjct: 133 NLVNVP 138
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 157 VCTHLGCVVPWNSAENKFICPCHGSQYN 184
VC G + ++ +NK++CP HG + N
Sbjct: 1063 VCDQCGYIGWYDKNKNKYVCPIHGDKSN 1090
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 157 VCTHLGCVVPWNSAENKFICPCHGSQYN 184
VC G + ++ +NK++CP HG + N
Sbjct: 1060 VCDQCGYIGWYDKNKNKYVCPIHGDKSN 1087
>pdb|3TO3|A Chain A, Crystal Structure Of Petrobactin Biosynthesis Protein Asbb
From Bacillus Anthracis Str. Sterne
pdb|3TO3|B Chain B, Crystal Structure Of Petrobactin Biosynthesis Protein Asbb
From Bacillus Anthracis Str. Sterne
Length = 619
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 102 GGTTAKDAIGNDIIAADWLNTHGPGD--RTLTEGLKGDPTYLVVEKDKTLASYGINAVCT 159
G AK+ G II A WLN +G + R L + +LVVE L S+G N +
Sbjct: 388 NGLYAKEKDGTPIIDA-WLNKYGIENWLRLLIQKAIIPVIHLVVEHGIALESHGQNXILV 446
Query: 160 H 160
H
Sbjct: 447 H 447
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|C Chain C, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|E Chain E, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
Length = 454
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 125 PGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENK--FICPCHGSQ 182
PGD +T + D L + D T ++ IN+ CTH G + + N F+C HG
Sbjct: 50 PGD-FITTYMAEDKIILSHQSDGTFRAF-INS-CTHRGNQICHADSGNAKAFVCNYHGWV 106
Query: 183 YNNQGRVVRGPAPLSLALAHANVENGKV 210
Y G +V PL H ++ ++
Sbjct: 107 YGQDGSLV--DVPLESRCYHNKLDKQEL 132
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYAT 90
P+MG + + N + +GA++ G ++P+AT
Sbjct: 288 PEMGHKGITNFIRIGALAAEHGIDVIPHAT 317
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYAT 90
P+MG + + N + +GA++ G ++P+AT
Sbjct: 308 PEMGHKGITNFIRIGALAAEHGIDVIPHAT 337
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 141 LVVEKDKTLASYGINAVCTHLGCVVPWNSAEN--KFICPCHGSQYNNQGRVVRGPA 194
+V +D+ G C H G V N F CP HG Y+N G +V PA
Sbjct: 71 FIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,879,328
Number of Sequences: 62578
Number of extensions: 288462
Number of successful extensions: 568
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 42
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)