Query 027005
Match_columns 229
No_of_seqs 228 out of 1496
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13474 cytochrome b6-f compl 100.0 1.4E-45 3.1E-50 312.3 17.7 174 56-229 5-178 (178)
2 cd03471 Rieske_cytochrome_b6f 100.0 9.7E-31 2.1E-35 210.8 12.9 124 106-229 3-126 (126)
3 TIGR01416 Rieske_proteo ubiqui 99.9 9.9E-28 2.1E-32 202.7 11.8 144 64-210 1-170 (174)
4 KOG1671 Ubiquinol cytochrome c 99.9 8.9E-28 1.9E-32 204.8 9.8 204 1-212 2-209 (210)
5 COG0723 QcrA Rieske Fe-S prote 99.9 5.2E-27 1.1E-31 197.5 11.6 163 59-223 5-176 (177)
6 TIGR03171 soxL2 Rieske iron-su 99.9 1E-26 2.2E-31 211.0 10.7 151 60-214 58-277 (321)
7 cd03470 Rieske_cytochrome_bc1 99.9 1.6E-21 3.4E-26 157.1 9.6 65 146-212 59-125 (126)
8 cd03476 Rieske_ArOX_small Smal 99.8 1.1E-19 2.3E-24 146.5 10.8 76 137-214 27-115 (126)
9 cd03528 Rieske_RO_ferredoxin R 99.8 8E-20 1.7E-24 138.6 9.0 76 134-212 20-97 (98)
10 cd03478 Rieske_AIFL_N AIFL (ap 99.8 8E-20 1.7E-24 138.6 8.9 75 134-211 19-95 (95)
11 TIGR02377 MocE_fam_FeS Rieske 99.8 1.2E-19 2.7E-24 139.9 9.4 78 134-213 21-100 (101)
12 cd03530 Rieske_NirD_small_Baci 99.8 2.8E-19 6E-24 136.2 9.3 77 134-213 20-98 (98)
13 PF00355 Rieske: Rieske [2Fe-2 99.8 3.7E-19 7.9E-24 134.6 9.2 71 136-208 23-97 (97)
14 cd03469 Rieske_RO_Alpha_N Ries 99.8 7.9E-19 1.7E-23 137.1 10.5 80 134-215 21-112 (118)
15 PRK09965 3-phenylpropionate di 99.8 2.2E-18 4.9E-23 133.8 10.7 75 137-214 24-101 (106)
16 cd03474 Rieske_T4moC Toluene-4 99.8 2E-18 4.4E-23 133.7 10.0 77 135-214 21-99 (108)
17 cd03477 Rieske_YhfW_C YhfW fam 99.8 2E-18 4.4E-23 131.5 8.2 72 135-208 19-90 (91)
18 cd04337 Rieske_RO_Alpha_Cao Ca 99.7 7.4E-18 1.6E-22 135.8 10.5 81 132-214 35-120 (129)
19 TIGR02694 arsenite_ox_S arseni 99.7 6.8E-18 1.5E-22 136.6 10.2 68 145-214 47-117 (129)
20 cd03532 Rieske_RO_Alpha_VanA_D 99.7 4.1E-18 8.9E-23 134.3 8.6 80 133-214 23-109 (116)
21 cd03531 Rieske_RO_Alpha_KSH Th 99.7 1.1E-17 2.3E-22 132.1 10.4 79 134-214 21-106 (115)
22 cd03479 Rieske_RO_Alpha_PhDO_l 99.7 3.6E-17 7.7E-22 133.9 11.7 80 133-214 41-130 (144)
23 cd04338 Rieske_RO_Alpha_Tic55 99.7 2.7E-17 5.9E-22 133.2 10.6 89 124-214 27-125 (134)
24 cd03467 Rieske Rieske domain; 99.7 2.9E-17 6.4E-22 124.7 8.8 71 135-207 21-93 (98)
25 cd03529 Rieske_NirD Assimilato 99.7 5E-17 1.1E-21 125.4 9.1 76 134-212 20-102 (103)
26 COG2146 {NirD} Ferredoxin subu 99.7 6.3E-17 1.4E-21 126.7 8.9 73 139-213 29-104 (106)
27 TIGR02378 nirD_assim_sml nitri 99.7 6.8E-17 1.5E-21 124.7 8.6 77 134-213 21-104 (105)
28 cd03475 Rieske_SoxF_SoxL SoxF 99.7 7.8E-17 1.7E-21 136.0 9.2 73 146-220 74-166 (171)
29 cd03480 Rieske_RO_Alpha_PaO Ri 99.7 1.7E-16 3.7E-21 129.2 10.3 82 132-215 35-130 (138)
30 cd03536 Rieske_RO_Alpha_DTDO T 99.7 1.7E-16 3.7E-21 126.6 9.7 79 134-214 21-114 (123)
31 cd03472 Rieske_RO_Alpha_BPDO_l 99.7 2.6E-16 5.6E-21 126.7 9.1 79 134-214 29-121 (128)
32 PRK09511 nirD nitrite reductas 99.7 3.3E-16 7.2E-21 122.7 9.3 77 134-213 23-107 (108)
33 cd03548 Rieske_RO_Alpha_OMO_CA 99.7 5.6E-16 1.2E-20 125.6 10.6 80 132-214 32-123 (136)
34 cd03537 Rieske_RO_Alpha_PrnD T 99.7 6.7E-16 1.4E-20 123.9 9.7 80 133-214 21-114 (123)
35 cd03541 Rieske_RO_Alpha_CMO Ri 99.6 1.1E-15 2.3E-20 121.8 10.6 81 133-215 21-112 (118)
36 cd03545 Rieske_RO_Alpha_OHBDO_ 99.6 2.8E-15 6.1E-20 123.8 9.5 80 133-214 45-143 (150)
37 cd03535 Rieske_RO_Alpha_NDO Ri 99.6 3.8E-15 8.3E-20 118.8 9.0 78 134-213 23-115 (123)
38 cd03539 Rieske_RO_Alpha_S5H Th 99.6 8E-15 1.7E-19 118.2 9.7 79 134-214 21-122 (129)
39 PLN02281 chlorophyllide a oxyg 99.6 7.4E-15 1.6E-19 142.0 10.6 82 132-215 238-324 (536)
40 PF13806 Rieske_2: Rieske-like 99.6 7.1E-15 1.5E-19 114.7 7.3 78 133-213 20-104 (104)
41 PLN00095 chlorophyllide a oxyg 99.6 1.4E-14 3.1E-19 135.3 10.0 84 130-215 89-179 (394)
42 cd03538 Rieske_RO_Alpha_AntDO 99.6 1.7E-14 3.7E-19 118.6 9.2 81 132-214 41-139 (146)
43 cd03542 Rieske_RO_Alpha_HBDO R 99.5 4.5E-14 9.9E-19 113.0 10.0 79 134-214 21-116 (123)
44 cd03473 Rieske_CMP_Neu5Ac_hydr 99.5 1.3E-13 2.8E-18 108.4 8.0 69 135-206 29-101 (107)
45 PLN02518 pheophorbide a oxygen 99.4 1.1E-12 2.4E-17 127.8 11.0 84 130-215 106-206 (539)
46 COG4638 HcaE Phenylpropionate 99.3 3.2E-12 6.9E-17 117.8 9.0 87 128-216 41-139 (367)
47 TIGR03228 anthran_1_2_A anthra 99.3 8.9E-12 1.9E-16 118.9 8.3 81 133-215 58-151 (438)
48 TIGR03229 benzo_1_2_benA benzo 99.3 1.8E-11 3.8E-16 116.7 10.0 81 133-215 58-155 (433)
49 PF08802 CytB6-F_Fe-S: Cytochr 99.1 2.6E-11 5.7E-16 79.0 2.1 39 58-96 1-39 (39)
50 PF10399 UCR_Fe-S_N: Ubiquitin 98.4 1.9E-07 4.2E-12 61.6 2.9 38 58-95 4-41 (41)
51 TIGR02811 formate_TAT formate 95.6 0.017 3.6E-07 41.9 3.9 24 59-82 5-28 (66)
52 KOG1336 Monodehydroascorbate/f 95.4 0.013 2.8E-07 56.9 3.3 51 160-212 1-54 (478)
53 PF10518 TAT_signal: TAT (twin 95.3 0.018 3.8E-07 34.3 2.5 16 63-78 2-17 (26)
54 TIGR01409 TAT_signal_seq Tat ( 93.0 0.078 1.7E-06 32.1 2.0 17 63-79 1-17 (29)
55 PRK09898 hypothetical protein; 85.5 0.41 8.8E-06 41.3 1.3 26 63-88 13-38 (208)
56 PRK14993 tetrathionate reducta 71.8 3.8 8.3E-05 36.5 3.1 15 62-76 2-16 (244)
57 PRK14990 anaerobic dimethyl su 71.6 3.9 8.5E-05 42.0 3.5 26 53-78 3-29 (814)
58 PF10080 DUF2318: Predicted me 71.1 22 0.00047 27.8 6.8 69 138-214 20-92 (102)
59 PRK10882 hydrogenase 2 protein 69.5 3.2 6.9E-05 38.7 2.2 13 63-75 1-13 (328)
60 PRK09476 napG quinol dehydroge 67.9 6.2 0.00014 35.4 3.6 24 61-84 7-30 (254)
61 TIGR00391 hydA hydrogenase (Ni 60.5 5.6 0.00012 37.8 1.9 20 62-81 14-33 (365)
62 PRK10468 hydrogenase 2 small s 59.7 6 0.00013 37.7 2.0 27 62-88 12-38 (371)
63 TIGR02166 dmsA_ynfE anaerobic 52.6 11 0.00025 38.4 2.8 12 63-74 1-12 (797)
64 TIGR01412 tat_substr_1 Tat-tra 51.3 13 0.00029 35.8 2.9 19 59-77 4-22 (414)
65 PRK15488 thiosulfate reductase 49.1 13 0.00028 37.9 2.6 16 62-77 2-17 (759)
66 TIGR03396 PC_PLC phospholipase 43.8 16 0.00036 37.5 2.4 26 63-89 1-26 (690)
67 PF12318 FAD-SLDH: Membrane bo 40.8 28 0.0006 29.4 2.9 8 62-69 1-8 (168)
68 PRK02888 nitrous-oxide reducta 40.3 31 0.00066 35.2 3.6 18 58-75 4-21 (635)
69 PRK15102 trimethylamine N-oxid 39.6 19 0.0004 37.3 2.0 13 63-75 1-13 (825)
70 PRK13747 putative mercury resi 39.0 9.4 0.0002 28.5 -0.2 8 173-180 25-32 (78)
71 TIGR01553 formate-DH-alph form 38.3 27 0.00058 37.4 3.0 16 63-78 2-17 (1009)
72 PF05265 DUF723: Protein of un 38.0 22 0.00047 25.4 1.6 15 172-186 31-45 (60)
73 PRK00420 hypothetical protein; 37.8 28 0.0006 27.8 2.3 34 154-188 22-56 (112)
74 COG1740 HyaA Ni,Fe-hydrogenase 35.9 22 0.00047 33.6 1.7 22 62-83 12-33 (355)
75 COG0375 HybF Zn finger protein 35.4 21 0.00045 28.7 1.2 31 157-189 72-104 (115)
76 PF07282 OrfB_Zn_ribbon: Putat 33.4 40 0.00087 23.5 2.4 32 154-185 27-58 (69)
77 PF05052 MerE: MerE protein; 32.8 13 0.00029 27.5 -0.2 12 173-184 25-36 (75)
78 PF03935 SKN1: Beta-glucan syn 32.5 97 0.0021 30.8 5.6 33 62-94 36-70 (504)
79 KOG1671 Ubiquinol cytochrome c 32.4 7.1 0.00015 34.3 -2.0 76 62-149 42-120 (210)
80 PF02959 Tax: HTLV Tax; Inter 32.3 15 0.00032 31.9 0.0 52 156-207 25-82 (222)
81 PRK13532 nitrate reductase cat 32.1 32 0.0007 35.6 2.4 16 62-77 2-17 (830)
82 TIGR02659 TTQ_MADH_Lt methylam 31.9 32 0.0007 29.8 1.9 27 63-90 22-48 (186)
83 TIGR03149 cyt_nit_nrfC cytochr 31.7 44 0.00095 29.2 2.8 11 63-73 2-12 (225)
84 TIGR01706 NAPA periplasmic nit 31.3 36 0.00079 35.3 2.6 15 63-77 2-16 (830)
85 cd02764 MopB_PHLH The MopB_PHL 30.5 33 0.00071 33.4 2.0 14 65-78 1-14 (524)
86 TIGR00397 mauM_napG MauM/NapG 29.9 54 0.0012 28.5 3.1 15 63-77 2-16 (213)
87 PF09740 DUF2043: Uncharacteri 29.7 22 0.00048 28.3 0.6 20 171-190 85-106 (110)
88 PF05570 DUF765: Circovirus pr 29.4 28 0.00061 20.9 0.8 17 1-18 1-17 (29)
89 COG4663 FcbT1 TRAP-type mannit 29.3 50 0.0011 31.2 2.9 32 63-94 1-35 (363)
90 TIGR02164 torA trimethylamine- 29.1 40 0.00086 34.9 2.4 15 63-77 1-15 (822)
91 PF11906 DUF3426: Protein of u 27.9 84 0.0018 25.1 3.7 60 154-213 33-103 (149)
92 COG1645 Uncharacterized Zn-fin 27.4 39 0.00084 27.8 1.6 29 155-185 28-56 (131)
93 PF07897 DUF1675: Protein of u 27.0 23 0.0005 32.6 0.2 16 170-185 249-264 (284)
94 PRK05363 TMAO/DMSO reductase; 26.0 42 0.00091 31.4 1.8 15 63-77 21-35 (319)
95 COG0361 InfA Translation initi 24.7 1.3E+02 0.0028 22.3 3.9 45 172-216 11-59 (75)
96 PRK07474 sulfur oxidation prot 24.6 82 0.0018 26.4 3.1 15 60-74 5-19 (154)
97 COG3490 Uncharacterized protei 22.0 44 0.00096 31.4 1.1 23 60-82 3-25 (366)
98 COG0473 LeuB Isocitrate/isopro 20.2 45 0.00097 31.6 0.8 22 172-193 266-287 (348)
No 1
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=312.34 Aligned_cols=174 Identities=68% Similarity=1.198 Sum_probs=157.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCC
Q 027005 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 135 (229)
Q Consensus 56 ~~~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~ 135 (229)
..+++||++||+||+.+++++++++++++++|+++|+.||....+.++.+.+|.+|+++..++|..++.+++..+.+...
T Consensus 5 ~~~~~~d~~RR~FL~~~~~~~gg~~a~~~~~P~v~~~~Pp~~~~~~g~~~a~d~~G~~I~~s~~~~~~~~g~~~~v~~~~ 84 (178)
T PRK13474 5 GSSDVPSMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPSAGGAGGGTTAKDELGNDIPASQFLATHPAGDRSLVQGLK 84 (178)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhheeCChhHccCCCcceeecccCCeeehhhccccCCCCCcEEEEEcC
Confidence 35789999999999999999999999999999999999998776666778889999999888887776676666666667
Q ss_pred CCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECCeEEEEeC
Q 027005 136 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPW 215 (229)
Q Consensus 136 g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g~I~V~~~ 215 (229)
+++.+++++.+|++.+||++++|||+||++.|+..++.|.||||||+||.+|+++.||++++|+.|+++++||.|+|.+|
T Consensus 85 g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~~~~~CP~Hgs~Fd~tG~~~~gPa~~~L~~y~v~v~~g~v~v~~~ 164 (178)
T PRK13474 85 GDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGENKFQCPCHGSQYDATGKVVRGPAPLSLALVHVTVEDDKVLFSPW 164 (178)
T ss_pred CCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCCCEEEecCcCCEECCCCCCccCCCCCCCCeEeEEEECCEEEEEEe
Confidence 78888888889998778999999999999999877789999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCC
Q 027005 216 TETDFRTGEAPWWA 229 (229)
Q Consensus 216 ~~~~fr~~~~~~~~ 229 (229)
.|+|||+|++|||+
T Consensus 165 ~e~~~~~~~~~~~~ 178 (178)
T PRK13474 165 TETDFRTGEKPWWV 178 (178)
T ss_pred eecCCcCCCCCCcC
Confidence 99999999999996
No 2
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.97 E-value=9.7e-31 Score=210.82 Aligned_cols=124 Identities=77% Similarity=1.424 Sum_probs=114.0
Q ss_pred eecCCCCceeeecccccCCCCCccccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcC
Q 027005 106 AKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN 185 (229)
Q Consensus 106 ~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~ 185 (229)
.+|++|++++.+.|+.++.|++....+...+++.+++++.+|++.+||++++|||+||++.++..++.|+||||||+||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~~~~i~CP~Hg~~Fd~ 82 (126)
T cd03471 3 AKDALGNDIKVSKWLATHNPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDA 82 (126)
T ss_pred cccccCCceeHHHHHhhCCCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCCCCEEEcCCCCCEECC
Confidence 36889999999999999999987777766678888888889988778999999999999998766789999999999999
Q ss_pred CCceecCCCCCCCceEEEEEECCeEEEEeCcCCCCCCCCCCCCC
Q 027005 186 QGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229 (229)
Q Consensus 186 sG~vv~GPap~~L~~~~v~v~~g~I~V~~~~~~~fr~~~~~~~~ 229 (229)
+|+++.+|++++|+.|++++++|.|+|..+.|+|+|+++-|||.
T Consensus 83 tG~~~~gPa~~~L~~y~V~vedg~I~V~~~~~~~~~~~~~~~~~ 126 (126)
T cd03471 83 TGKVVRGPAPLSLALVHATVDDDKVVLSPWTETDFRTGEKPWWK 126 (126)
T ss_pred CCCEecCCCCCCCceEeEEEECCEEEEEECcccCcccCCCCCcC
Confidence 99999999999999999999999999999999999999999994
No 3
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.95 E-value=9.9e-28 Score=202.71 Aligned_cols=144 Identities=24% Similarity=0.495 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeec----CCCCceeeeccccc------CCCCCc----c
Q 027005 64 GKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKD----AIGNDIIAADWLNT------HGPGDR----T 129 (229)
Q Consensus 64 ~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d----~~G~~v~~~~W~~~------~~p~~~----~ 129 (229)
+||+||+.++.++++++++++++|+++++.|..+..+.++.++++ .+|+.. ...|..+ ..+++. .
T Consensus 1 ~RR~fl~~~~~~~~~~~~~~~~~p~v~~~~P~~~~~a~~~~~~v~l~eL~pG~~~-~v~~~GkpI~I~~~t~~~~~~~~~ 79 (174)
T TIGR01416 1 TRRDFLYAATGAVGAVGAAAAAVPFIDSMNPSASVKAAGAPTEVDVSKIQPGQQL-TVEWRGKPVFIRRRTKKEIDALKA 79 (174)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHheeCcchhccccCCcEEEEHHHCCCCCeE-EEEECCeEEEEEeCCHHHhhhhhc
Confidence 599999999999999999999999999998877665544556554 345432 2233211 111000 0
Q ss_pred -----ccccC----CCCceEEEEecCCeEEEEEEeccCCCCCccCCccCC---CCEEEcCCCCeeEcCCCceecCCCCCC
Q 027005 130 -----LTEGL----KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSA---ENKFICPCHGSQYNNQGRVVRGPAPLS 197 (229)
Q Consensus 130 -----~~~~~----~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~---~~~~~CPcHGs~FD~sG~vv~GPap~~ 197 (229)
+...+ ..+..+.++..++++ +|++++|||+||.+.|... .+.|+||||||+||++|+++.||++++
T Consensus 80 ~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~--~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~~~ 157 (174)
T TIGR01416 80 LDLGALKDPNSEAQQPDYARVKRSGKPEW--LVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAPLN 157 (174)
T ss_pred cchhhcCCCcccccCcchhhhhhccCCcE--EEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCCCC
Confidence 00000 001122334345666 8999999999999987643 358999999999999999999999999
Q ss_pred CceEEEEEECCeE
Q 027005 198 LALAHANVENGKV 210 (229)
Q Consensus 198 L~~~~v~v~~g~I 210 (229)
|++|+++++++..
T Consensus 158 L~~~~~~~~~~~~ 170 (174)
T TIGR01416 158 LPVPPYKFLSDTT 170 (174)
T ss_pred CCCCCEEEcCCCE
Confidence 9999999987643
No 4
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=99.95 E-value=8.9e-28 Score=204.76 Aligned_cols=204 Identities=25% Similarity=0.339 Sum_probs=169.1
Q ss_pred CCCCCCCCCCCcccccccCCCCCCcccceeecccc--ccccccCCCcceeeeccccCCCCCCCCcchHHHHHHHHHHHhH
Q 027005 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPAR--TQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVS 78 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pd~~RR~FL~~~~~Ga~a 78 (229)
|+| +++|....+||-++..-+..|.-...+++.. .++.++++|+..+.|+...+.++..++++.+-+......++.+
T Consensus 2 ~~s-~s~~~~~s~~l~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~k~~~sy~~~g~~~~~~a~~ak~~v~~fi~smsAsa 80 (210)
T KOG1671|consen 2 MSS-SSLSRVLSTGLGSSHTDLMVPDFSDYRRESVKDHQDTGEERKGFRSYLMVGAGAAGRAYAAKNLVTTFISSMSASA 80 (210)
T ss_pred ccc-cccchhhccccccccccccCCCchhhhchhhhccccchhhhhceeeEEEecccceeehhhhhhhHHHHHHHhhhhh
Confidence 344 6667755679999999999999999998776 4667888788999999999999999999888887777788888
Q ss_pred HHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCCCCceEEEEecCCeEEEEEEeccC
Q 027005 79 LPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVC 158 (229)
Q Consensus 79 l~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vC 158 (229)
-..+.+.+++.-+.+|++ .++.++-.|+++....|...++++++++.+...+||. ...+.......+.+.++|
T Consensus 81 dvlA~akiei~l~~IPeG------k~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq-~d~~rvk~~ewl~~igVC 153 (210)
T KOG1671|consen 81 DVLAMAKIEIKLSDIPEG------KTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQ-DDVDRVKKPEWLVVIGVC 153 (210)
T ss_pred hhhhheeeeeeeecCCCC------CCcceeccCCceEEeeccccccccccccchhhccCch-hhhhhccCcceEEEEeee
Confidence 888888999988888973 4567778889888888888888888888888888988 333333344457889999
Q ss_pred CCCCccCCccCC-CCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEEC-CeEEE
Q 027005 159 THLGCVVPWNSA-ENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVEN-GKVVF 212 (229)
Q Consensus 159 tHlGc~l~~~~~-~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~-g~I~V 212 (229)
|||||.+.++.+ .+.++||||||+||.+||+.+||||.+|.++.+.+.+ +.|.|
T Consensus 154 ThLGCVp~~~AGd~gg~~CPCHGSHYdasGRIrkGPAPlnlevP~y~F~~~d~viv 209 (210)
T KOG1671|consen 154 THLGCVPIANAGDYGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSEDKVIV 209 (210)
T ss_pred ccccccccccccccCceecccccccccccCceecCCCCCccCCCceecccCceEec
Confidence 999999998874 4699999999999999999999999999999988876 44443
No 5
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=99.94 E-value=5.2e-27 Score=197.52 Aligned_cols=163 Identities=31% Similarity=0.535 Sum_probs=113.2
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeecCCC-Cce--eeecccccCCCCCccccccCC
Q 027005 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIG-NDI--IAADWLNTHGPGDRTLTEGLK 135 (229)
Q Consensus 59 ~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G-~~v--~~~~W~~~~~p~~~~~~~~~~ 135 (229)
...+.+||+||..++.+.++..+..+++|++.++.|+.......+.++++... +++ ....|... |..........
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~ 82 (177)
T COG0723 5 AATGLSRRDFLVLLTTGVGAVGAGAALYPAVESVDPPAGGGLAGAPIEVDDSGIGPGPLVTVPWRGK--PVFLLRRTEYA 82 (177)
T ss_pred ccccccHHHhhhhhhccccccceeeeeeehhhcccCcccccccCCceeeeccCCccceEEEEecCCC--CeeeEeecccc
Confidence 34467899999999998888888899999999999977654444455544221 221 12234221 11000000111
Q ss_pred CCceEEEEecCCeE---EEEEEeccCCCCCccCCcc--CCCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECCe-
Q 027005 136 GDPTYLVVEKDKTL---ASYGINAVCTHLGCVVPWN--SAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGK- 209 (229)
Q Consensus 136 g~p~~lv~~~dg~i---~~~A~~~vCtHlGc~l~~~--~~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g~- 209 (229)
+......+..++.. .++|++.+||||||++.|+ ...+.|+||||||+||.+|+|++|||+++|+++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~~~L~~~~~~~~~d~~ 162 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAPRPLPIPPLEYDSDKL 162 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCCCCcCCceEEEeCCce
Confidence 22233333333222 1369999999999999996 57799999999999999999999999999999999999875
Q ss_pred EEEEeCcCCCCCCC
Q 027005 210 VVFVPWTETDFRTG 223 (229)
Q Consensus 210 I~V~~~~~~~fr~~ 223 (229)
+.+..+.+.++++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (177)
T COG0723 163 YLIGLGTEGDPFTI 176 (177)
T ss_pred EEEEeccccccccc
Confidence 55677777777764
No 6
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=99.94 E-value=1e-26 Score=210.98 Aligned_cols=151 Identities=25% Similarity=0.460 Sum_probs=105.1
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCC--CCceeecCCCCceeeecccccCCCCCccccccCCCC
Q 027005 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAG--GGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGD 137 (229)
Q Consensus 60 ~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~--~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~ 137 (229)
.+|++||+||+.+++|+++++ ++.++|++++|.||....++ ...+.+|..|++|+++++.... +......+.+.++
T Consensus 58 ~vD~~RR~fL~~al~gAga~a-~~~avPlv~~l~PP~~a~atG~pk~La~D~~GnPIKASdL~vnS-p~~~lfeyPl~gd 135 (321)
T TIGR03171 58 GVDEGRRKFLKGLIFGIAAAA-VVGIIPGLRVLVPPTVAAASGFPKSLLVDSSGNPIKASSIPVNS-PIITIFEYPMTGE 135 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHH-hhhhhhheecccCchhhhccCCCceEEecCCCCeeeHHHccCCC-cccccccCcCCCC
Confidence 568999999999998888854 44578999999998765433 3367889999999988763221 1100011111111
Q ss_pred ------------------ceEEEEec-------------CCeEEEEEEeccCCCCCccCCcc------------------
Q 027005 138 ------------------PTYLVVEK-------------DKTLASYGINAVCTHLGCVVPWN------------------ 168 (229)
Q Consensus 138 ------------------p~~lv~~~-------------dg~i~~~A~~~vCtHlGc~l~~~------------------ 168 (229)
|.-+.... ++.| +|||.+|||+||++.+.
T Consensus 136 P~fLIklgka~~~~v~i~p~~v~~~~~g~~y~~pgGVGp~~~I--VAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~ 213 (321)
T TIGR03171 136 PNFLLNLGDSSGKPVEIPPTKVVVPQTGKTYTFPGGVGPNKSI--VAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEP 213 (321)
T ss_pred cHHHHHhhhhcCCceecCccccccCCCCcceeccCCcCCCCCE--EEEecccCcCCCCcchhhccCcccccccccccccc
Confidence 11121111 1334 79999999999998442
Q ss_pred -----------CCC---CEEEcCCCCeeEcC-C-CceecCCCCCCCceEEEEEEC--CeEEEEe
Q 027005 169 -----------SAE---NKFICPCHGSQYNN-Q-GRVVRGPAPLSLALAHANVEN--GKVVFVP 214 (229)
Q Consensus 169 -----------~~~---~~~~CPcHGs~FD~-s-G~vv~GPap~~L~~~~v~v~~--g~I~V~~ 214 (229)
... +.|.||||||+||. + |+++.|||+++|+++++++++ |.|+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA~rpLp~i~l~~d~~~~~l~AvG 277 (321)
T TIGR03171 214 DQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPTVRPLPAVILEWDSSTDYLYAIG 277 (321)
T ss_pred cccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCCCCCCCcceEEEeCCCCeEEEEe
Confidence 011 38999999999999 4 589999999999999999984 5677754
No 7
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.86 E-value=1.6e-21 Score=157.13 Aligned_cols=65 Identities=37% Similarity=0.832 Sum_probs=58.7
Q ss_pred CCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEEC-CeEEE
Q 027005 146 DKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVEN-GKVVF 212 (229)
Q Consensus 146 dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~-g~I~V 212 (229)
++++ ||++++|||+||.+.++. +++.|+||||||+||++|+++.||++++|++|++++++ +.|+|
T Consensus 59 ~~~~--~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl~G~~~~gPa~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 59 KPEW--LVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDASGRIRKGPAPLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CCcE--EEEeCcCCCCCCeeccccCCCCEEEecCcCCEECCCCeEecCCCCCCCCeeeEEEecCCEEEe
Confidence 4565 899999999999998876 56899999999999999999999999999999999987 67766
No 8
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.82 E-value=1.1e-19 Score=146.52 Aligned_cols=76 Identities=32% Similarity=0.686 Sum_probs=67.3
Q ss_pred CceEEEEec---------CCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcC--CCceecCCCCCCCceEEEEE
Q 027005 137 DPTYLVVEK---------DKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN--QGRVVRGPAPLSLALAHANV 205 (229)
Q Consensus 137 ~p~~lv~~~---------dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~--sG~vv~GPap~~L~~~~v~v 205 (229)
.+++|++.. ++++ +|++++|||+||+|.++.+++.|.||||||+||+ +|+++.||+.++|+.|++++
T Consensus 27 ~~i~v~r~~~~~~~~~~~~g~~--~A~~~~CpH~g~~L~~g~~~~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ypv~v 104 (126)
T cd03476 27 SPCVLVKLGVPVPGGVGPDNDI--VAFSALCTHMGCPLTYDPSNKTFVCPCHFSQFDPARGGQMVSGQATQNLPQIVLEY 104 (126)
T ss_pred CcEEEEECCccccCccccCCEE--EEEeCcCCCCCccccccccCCEEEccCcCCEEeCCCCCeEEcCCCCCCCCeEEEEE
Confidence 567777753 5676 8999999999999998777789999999999998 47999999999999999999
Q ss_pred E--CCeEEEEe
Q 027005 206 E--NGKVVFVP 214 (229)
Q Consensus 206 ~--~g~I~V~~ 214 (229)
+ +|.|+|..
T Consensus 105 e~~~g~V~~~~ 115 (126)
T cd03476 105 DEASGDIYAVG 115 (126)
T ss_pred ECCCCEEEEEE
Confidence 9 99999964
No 9
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.81 E-value=8e-20 Score=138.60 Aligned_cols=76 Identities=24% Similarity=0.433 Sum_probs=66.7
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVV 211 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~ 211 (229)
..+.+++|++.. +++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|.|+
T Consensus 20 ~~g~~~~v~r~~-~~~--~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~~~v~~~~g~v~ 96 (98)
T cd03528 20 VGGRPIAVYRVD-GEF--YATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKVEDGDVY 96 (98)
T ss_pred ECCeEEEEEEEC-CEE--EEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCCCCCcceEeEEEECCEEE
Confidence 345667777764 465 899999999999998763 5679999999999999 99999999999999999999999999
Q ss_pred E
Q 027005 212 F 212 (229)
Q Consensus 212 V 212 (229)
|
T Consensus 97 v 97 (98)
T cd03528 97 V 97 (98)
T ss_pred E
Confidence 8
No 10
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.81 E-value=8e-20 Score=138.58 Aligned_cols=75 Identities=28% Similarity=0.486 Sum_probs=66.1
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVV 211 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~ 211 (229)
..+.+++|++. +|++ ||++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|.||
T Consensus 19 ~~~~~v~v~r~-~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 19 VGDGKVLLVRQ-GGEV--HAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVEDGRVY 95 (95)
T ss_pred eCCcEEEEEEE-CCEE--EEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccCCcceEEEEEECCEEC
Confidence 34567777775 7776 899999999999998764 5689999999999998 99999999988999999999999985
No 11
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.81 E-value=1.2e-19 Score=139.88 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=69.0
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVV 211 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~ 211 (229)
..+.+++|++..+|++ ||+++.|||+|++|..+. +++.+.||||||+||+ ||+++.+|+..+|+.|++++++|.|+
T Consensus 21 ~~g~~i~l~r~~~g~~--~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~y~v~v~~g~v~ 98 (101)
T TIGR02377 21 HGGRTFAIYRTPDDQY--YATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKVVDGAVY 98 (101)
T ss_pred ECCeEEEEEEeCCCEE--EEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCCccCCcceEeEEEECCEEE
Confidence 4556788888667776 899999999999998764 5689999999999998 99999999888999999999999999
Q ss_pred EE
Q 027005 212 FV 213 (229)
Q Consensus 212 V~ 213 (229)
|.
T Consensus 99 V~ 100 (101)
T TIGR02377 99 VD 100 (101)
T ss_pred Ee
Confidence 84
No 12
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.80 E-value=2.8e-19 Score=136.18 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=66.9
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVV 211 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~ 211 (229)
..+.+++|+|..+|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|++. +|+..+|+.|++++++|.|+
T Consensus 20 ~~g~~i~l~r~~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~-~p~~~~l~~y~v~v~~g~v~ 96 (98)
T cd03530 20 TGGGEIAVFRTADDEV--FALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQ-GPDEGCVRTFPVKVEDGRVY 96 (98)
T ss_pred ECCEEEEEEEeCCCCE--EEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCC-CCCCCccceEeEEEECCEEE
Confidence 3456788888777887 899999999999998865 5689999999999999 88865 67778999999999999999
Q ss_pred EE
Q 027005 212 FV 213 (229)
Q Consensus 212 V~ 213 (229)
|.
T Consensus 97 v~ 98 (98)
T cd03530 97 LG 98 (98)
T ss_pred EC
Confidence 83
No 13
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.79 E-value=3.7e-19 Score=134.55 Aligned_cols=71 Identities=34% Similarity=0.692 Sum_probs=61.3
Q ss_pred CCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECC
Q 027005 136 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENG 208 (229)
Q Consensus 136 g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g 208 (229)
+...++++..+|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|+++++++
T Consensus 23 ~~~~v~~~~~~g~~--~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 23 GGKLVLVRRSDGEI--YAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVGGPAPRPLPLYPVKVEGD 97 (97)
T ss_dssp TTEEEEEEETTTEE--EEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEESTTCSBSTEEEEEEETT
T ss_pred CCcEEEEEeCCCCE--EEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEecCCCCCCcCCCCeEEeCC
Confidence 44456666788887 899999999999999882 3579999999999999 59999999999999999999975
No 14
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.79 E-value=7.9e-19 Score=137.11 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=69.7
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCCC----------CCceE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPL----------SLALA 201 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap~----------~L~~~ 201 (229)
..+.+++|+|..+|++ +|+.|+|||+||+|.++. +++.|.||+|||+||++|+++.+|+.. .|+.|
T Consensus 21 ~~~~~i~v~r~~~g~~--~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P~~~~~~~~~~~~~~L~~~ 98 (118)
T cd03469 21 LGGEPLVLVRDRDGEV--RAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTV 98 (118)
T ss_pred ECCccEEEEECCCCCE--EEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCCcccccCCCCHHHCCCeEE
Confidence 3566788888778887 899999999999999864 568999999999999999999998754 49999
Q ss_pred EEEEECCeEEEEeC
Q 027005 202 HANVENGKVVFVPW 215 (229)
Q Consensus 202 ~v~v~~g~I~V~~~ 215 (229)
++++++|.|||...
T Consensus 99 ~v~~~~g~v~v~~~ 112 (118)
T cd03469 99 PVEEWGGLIFVNLD 112 (118)
T ss_pred EEEEECCEEEEEcC
Confidence 99999999999643
No 15
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.77 E-value=2.2e-18 Score=133.79 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=64.4
Q ss_pred CceEEEEecCCeEEEEEEeccCCCCCccCCccC-CC-CEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEEEE
Q 027005 137 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AE-NKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVVFV 213 (229)
Q Consensus 137 ~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~-~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~V~ 213 (229)
.++++++ .+|++ ||++++|||+||+|..+. ++ +.+.||||||+||+ +|+++.+|+..+|+.|++++++|.|+|.
T Consensus 24 ~~i~v~~-~~g~~--~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~y~v~v~~g~v~v~ 100 (106)
T PRK09965 24 PVIALFN-VGGEF--YAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHVEGGDIFID 100 (106)
T ss_pred CeEEEEE-ECCEE--EEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCCCCCCcceEeEEEECCEEEEE
Confidence 4455665 47776 899999999999997543 34 68999999999998 9999998988999999999999999996
Q ss_pred e
Q 027005 214 P 214 (229)
Q Consensus 214 ~ 214 (229)
.
T Consensus 101 ~ 101 (106)
T PRK09965 101 L 101 (106)
T ss_pred c
Confidence 4
No 16
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.77 E-value=2e-18 Score=133.73 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=66.5
Q ss_pred CCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEEE
Q 027005 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVVF 212 (229)
Q Consensus 135 ~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~V 212 (229)
.+++++++++.+|++ ||++|+|||+|++|.++. +++.|.||||||+||+ +|+.. +|+..+|+.|++++++|.|+|
T Consensus 21 ~~~~~~~~~~~~g~~--~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~-~~~~~~L~~~~v~v~~g~v~v 97 (108)
T cd03474 21 DGEEVLLVAPEGGEF--RAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGL-NPRDCRLARYPVKVEGGDILV 97 (108)
T ss_pred CCeEEEEEEccCCeE--EEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCcccc-CCCCCccceEeEEEECCEEEE
Confidence 456677888888887 899999999999998765 4569999999999999 67765 588899999999999999999
Q ss_pred Ee
Q 027005 213 VP 214 (229)
Q Consensus 213 ~~ 214 (229)
..
T Consensus 98 ~~ 99 (108)
T cd03474 98 DT 99 (108)
T ss_pred eC
Confidence 64
No 17
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.76 E-value=2e-18 Score=131.48 Aligned_cols=72 Identities=39% Similarity=0.780 Sum_probs=63.5
Q ss_pred CCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECC
Q 027005 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENG 208 (229)
Q Consensus 135 ~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g 208 (229)
.+.+++|++..+|++ ||++++|||+||+|.++..++.|.||||||+||.+|+++.+|+.++|+.|+++--++
T Consensus 19 ~g~~v~v~r~~~g~~--~A~~~~CpH~g~~l~~g~~~~~i~CP~Hg~~Fd~~G~~~~~Pa~~~l~~y~v~~~~~ 90 (91)
T cd03477 19 GGKRLAVYRDEDGVL--HTVSATCTHLGCIVHWNDAEKSWDCPCHGSRFSYDGEVIEGPAVSGLKPADDAPIDN 90 (91)
T ss_pred CCEEEEEEECCCCCE--EEEcCcCCCCCCCCcccCCCCEEECCCCCCEECCCCcEeeCCCCCCCCeeEeecccC
Confidence 456788888778887 899999999999998876667999999999999999999999999999999875443
No 18
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.75 E-value=7.4e-18 Score=135.77 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=71.0
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCC----CCCceEEEEEE
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP----LSLALAHANVE 206 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap----~~L~~~~v~v~ 206 (229)
....+.+++|++..+|++ +|++|+|+|+|++|..+. +++.|.||+|||+||.+|+++..|.. .+|+.|+++++
T Consensus 35 ~~v~g~~l~l~r~~~g~v--~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~ 112 (129)
T cd04337 35 FELFGQPWVLFRDEDGTP--GCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYDGDGECTKMPSTKCLNVGIAALPCMEQ 112 (129)
T ss_pred EEECCcEEEEEECCCCcE--EEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEECCCCCEEeCCcCCCccCCcceEeEEEE
Confidence 445678889998888887 899999999999998765 46899999999999999999998865 38999999999
Q ss_pred CCeEEEEe
Q 027005 207 NGKVVFVP 214 (229)
Q Consensus 207 ~g~I~V~~ 214 (229)
+|.|||..
T Consensus 113 ~g~V~V~~ 120 (129)
T cd04337 113 DGMIWVWP 120 (129)
T ss_pred CCEEEEEc
Confidence 99999965
No 19
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.75 E-value=6.8e-18 Score=136.63 Aligned_cols=68 Identities=31% Similarity=0.645 Sum_probs=61.2
Q ss_pred cCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcC-C-CceecCCCCCCCceEEEEEE-CCeEEEEe
Q 027005 145 KDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN-Q-GRVVRGPAPLSLALAHANVE-NGKVVFVP 214 (229)
Q Consensus 145 ~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-s-G~vv~GPap~~L~~~~v~v~-~g~I~V~~ 214 (229)
.+|++ ||++++|||+||+|.++.+++.|.||||||+||+ + |+++.+|+.++|+.|+++++ +|.|+...
T Consensus 47 ~~G~~--~A~~~~CpH~g~~L~~~~~~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~y~v~v~~~G~V~~~~ 117 (129)
T TIGR02694 47 PDGDI--VAFSTLCTHMGCPVSYSADNKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQIVLRVADNGDIFAEG 117 (129)
T ss_pred cCCEE--EEEeCcCCCCCcccccccCCCEEEcCCCCCEECCCCCCcEECCCCCCCCCeeEEEEECCCeEEEEe
Confidence 57777 8999999999999999888899999999999999 4 69999999999999999997 58898643
No 20
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.75 E-value=4.1e-18 Score=134.28 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=69.8
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCC------CCCceEEEEE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP------LSLALAHANV 205 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap------~~L~~~~v~v 205 (229)
...+.+++|++..+|++ +|++|+|||+|++|..+. .++.|.||+|||+||.+|+++..|.. .+|+.|++++
T Consensus 23 ~~~g~~i~l~r~~~g~~--~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~~p~~~~~~~~~~l~~~~v~~ 100 (116)
T cd03532 23 TLLGEPVVLYRTQDGRV--AALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVHMPGQERVPAKACVRSYPVVE 100 (116)
T ss_pred EECCceEEEEECCCCCE--EEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEeCCCCCCCCCccccccCCEEE
Confidence 34567888998888887 899999999999998764 56899999999999999999988764 3799999999
Q ss_pred ECCeEEEEe
Q 027005 206 ENGKVVFVP 214 (229)
Q Consensus 206 ~~g~I~V~~ 214 (229)
++|.|||..
T Consensus 101 ~~g~v~v~~ 109 (116)
T cd03532 101 RDALIWIWM 109 (116)
T ss_pred ECCEEEEEc
Confidence 999999964
No 21
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.74 E-value=1.1e-17 Score=132.13 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=68.6
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCC------CCCCceEEEEEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA------PLSLALAHANVE 206 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPa------p~~L~~~~v~v~ 206 (229)
..+.+++|+|+.+|++ +|++|+|||+|++|..+. +++.|.||+|||+||.+|+++..|. ...|+.|+++++
T Consensus 21 ~~g~~i~l~r~~~g~~--~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~~~~~p~~~~l~~ypv~~~ 98 (115)
T cd03531 21 AFGTKLVVFADSDGAL--NVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPYARRVPPLARTRAWPTLER 98 (115)
T ss_pred ECCeEEEEEECCCCCE--EEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCcccCCCcccccceEeEEEE
Confidence 4567788998878887 899999999999999765 5689999999999999999998764 347899999999
Q ss_pred CCeEEEEe
Q 027005 207 NGKVVFVP 214 (229)
Q Consensus 207 ~g~I~V~~ 214 (229)
+|.|||..
T Consensus 99 ~g~v~v~~ 106 (115)
T cd03531 99 NGQLFVWH 106 (115)
T ss_pred CCEEEEEC
Confidence 99999954
No 22
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.73 E-value=3.6e-17 Score=133.89 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=69.7
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCCC---------CCceEE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPL---------SLALAH 202 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap~---------~L~~~~ 202 (229)
...+.+++|+|..+|++ +|++|+|||+||+|.++. +++.|.||||||+||.+|+++..|+.. .|+.|+
T Consensus 41 ~~~g~~i~v~r~~~G~v--~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~ 118 (144)
T cd03479 41 RLLGEDLVAFRDTSGRV--GLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYP 118 (144)
T ss_pred EECCcEEEEEEeCCCCE--EEEcCcCCCCCCcccCCcccCCEEEccCCCcEECCCCCEEECCCCccccCCccccCcceEe
Confidence 45667788888888887 899999999999999875 468999999999999999999988542 589999
Q ss_pred EEEECCeEEEEe
Q 027005 203 ANVENGKVVFVP 214 (229)
Q Consensus 203 v~v~~g~I~V~~ 214 (229)
+++++|.|||..
T Consensus 119 v~~~~G~I~V~~ 130 (144)
T cd03479 119 VRERGGLVWAYM 130 (144)
T ss_pred EEEECCEEEEEC
Confidence 999999999964
No 23
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.73 E-value=2.7e-17 Score=133.18 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCCccccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCC--------
Q 027005 124 GPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA-------- 194 (229)
Q Consensus 124 ~p~~~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPa-------- 194 (229)
++..........+.+++|+|+.+|++ ||+.|+|+|+|.+|..+. +++.|.||+|||+||.+|+++..|.
T Consensus 27 l~~~~~~~~~v~g~~ivl~r~~~G~v--~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~~~~~P~~~~~~~~~ 104 (134)
T cd04338 27 VPTDAPLGLSVYDEPFVLFRDQNGQL--RCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGKCVKIPQLPADAKIP 104 (134)
T ss_pred CCCCCCEEEEECCceEEEEEcCCCCE--EEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCCEEECCCCCccCCCC
Confidence 34333333446778899998878887 899999999999998764 5679999999999999999998763
Q ss_pred -CCCCceEEEEEECCeEEEEe
Q 027005 195 -PLSLALAHANVENGKVVFVP 214 (229)
Q Consensus 195 -p~~L~~~~v~v~~g~I~V~~ 214 (229)
...|+.|++++++|.|||..
T Consensus 105 ~~~~l~~y~v~~~~G~V~V~~ 125 (134)
T cd04338 105 KNACVKSYEVRDSQGVVWMWM 125 (134)
T ss_pred cccCcceEeEEEECCEEEEEc
Confidence 24699999999999999964
No 24
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.72 E-value=2.9e-17 Score=124.67 Aligned_cols=71 Identities=35% Similarity=0.748 Sum_probs=63.4
Q ss_pred CCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEEC
Q 027005 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVEN 207 (229)
Q Consensus 135 ~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~ 207 (229)
.+..++|++..++++ ||+++.|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|++++++
T Consensus 21 ~~~~~~v~~~~~~~~--~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~~~~ 93 (98)
T cd03467 21 GGGPVVVVRREGGEV--YALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEG 93 (98)
T ss_pred CCeEEEEEEeCCCEE--EEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCCCCCcCEEEEEEeC
Confidence 356677888777787 899999999999998764 6789999999999999 9999999999999999999985
No 25
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.71 E-value=5e-17 Score=125.35 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCcc-CCccC-----CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCV-VPWNS-----AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVE 206 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~-l~~~~-----~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~ 206 (229)
..+.+++|++..+|++ ||+.+.|||.|++ +..+. +++.++||+|||+||+ ||+++.+|. .+|+.|+++++
T Consensus 20 ~~g~~i~l~r~~~g~~--~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~-~~l~~y~v~~~ 96 (103)
T cd03529 20 VGDTQIAIFRLPGREV--YAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRCLEDED-VSVATFPVRVE 96 (103)
T ss_pred ECCEEEEEEEeCCCeE--EEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCccCCCC-ccEeeEeEEEE
Confidence 4566788888777676 8999999999997 55432 2348999999999998 999999886 58999999999
Q ss_pred CCeEEE
Q 027005 207 NGKVVF 212 (229)
Q Consensus 207 ~g~I~V 212 (229)
+|.|+|
T Consensus 97 ~g~v~v 102 (103)
T cd03529 97 DGEVYV 102 (103)
T ss_pred CCEEEE
Confidence 999998
No 26
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.70 E-value=6.3e-17 Score=126.71 Aligned_cols=73 Identities=27% Similarity=0.530 Sum_probs=63.3
Q ss_pred eEEEEecCCeEEEEEEeccCCCCCccCCccC-CCC-EEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEEEE
Q 027005 139 TYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AEN-KFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVVFV 213 (229)
Q Consensus 139 ~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~-~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~V~ 213 (229)
..+++..+|++ ||+.|+|||.||+++.+. +++ .+.||+|+++||+ ||+++.+|+...|+.|++++++|.|+|.
T Consensus 29 ~~~~~~~~g~v--~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~~p~~~~l~~y~vrve~g~v~v~ 104 (106)
T COG2146 29 FALVVRADGEV--FAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRVEGGRVFVD 104 (106)
T ss_pred EEEEEecCCEE--EEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceecCCCCCceeEEeEEEECCEEEEe
Confidence 55666788887 999999999999987764 343 6999999999999 9999998875459999999999999985
No 27
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.70 E-value=6.8e-17 Score=124.71 Aligned_cols=77 Identities=19% Similarity=0.376 Sum_probs=63.7
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCC-CccCCccC-CCC----EEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHL-GCVVPWNS-AEN----KFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVE 206 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHl-Gc~l~~~~-~~~----~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~ 206 (229)
..+.+++|++..++++ ||+.+.|||+ +.+|..+. .++ .|.||+|||+||+ +|+++.+|. .+|+.|+++++
T Consensus 21 v~g~~l~v~r~~~~~~--~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~-~~L~~y~v~v~ 97 (105)
T TIGR02378 21 LGDTQIAIFRVPGDQV--FAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGRCLEDDS-GSVRTYEVRVE 97 (105)
T ss_pred ECCEEEEEEEeCCCcE--EEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCccccCCCC-ccEeeEeEEEE
Confidence 3566788888767776 8999999999 77787653 223 3999999999999 999998665 69999999999
Q ss_pred CCeEEEE
Q 027005 207 NGKVVFV 213 (229)
Q Consensus 207 ~g~I~V~ 213 (229)
+|.|+|.
T Consensus 98 ~g~v~v~ 104 (105)
T TIGR02378 98 DGRVYVA 104 (105)
T ss_pred CCEEEEe
Confidence 9999984
No 28
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.69 E-value=7.8e-17 Score=136.01 Aligned_cols=73 Identities=33% Similarity=0.630 Sum_probs=59.6
Q ss_pred CCeEEEEEEeccCCCCCccCCc----c------------CCCCEEEcCCCCeeEcC-CC-ceecCCCCCCCceEEEEEEC
Q 027005 146 DKTLASYGINAVCTHLGCVVPW----N------------SAENKFICPCHGSQYNN-QG-RVVRGPAPLSLALAHANVEN 207 (229)
Q Consensus 146 dg~i~~~A~~~vCtHlGc~l~~----~------------~~~~~~~CPcHGs~FD~-sG-~vv~GPap~~L~~~~v~v~~ 207 (229)
++++ +|++++|||+||++.+ . .+++.|+||||||+||+ +| .++.|||+++|++|.+++|+
T Consensus 74 ~g~I--vA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~ 151 (171)
T cd03475 74 NKSI--VAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPAVILEYDS 151 (171)
T ss_pred CCEE--EEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeC
Confidence 4555 8999999999999864 1 13579999999999999 55 78889999999999999995
Q ss_pred --CeEEEEeCcCCCC
Q 027005 208 --GKVVFVPWTETDF 220 (229)
Q Consensus 208 --g~I~V~~~~~~~f 220 (229)
|.||.+.-+..+|
T Consensus 152 ~~d~iyAvG~~g~~~ 166 (171)
T cd03475 152 STDDLYAVGTLGPEF 166 (171)
T ss_pred CCCcEEEEeccCccc
Confidence 7899876544443
No 29
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.69 E-value=1.7e-16 Score=129.20 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=69.5
Q ss_pred ccCCCCceEEEEec-CCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCC-----------CCC
Q 027005 132 EGLKGDPTYLVVEK-DKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPA-----------PLS 197 (229)
Q Consensus 132 ~~~~g~p~~lv~~~-dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPa-----------p~~ 197 (229)
....+.+++|+|.. +|++ ||+.|+|||+|.+|..+. .++.|.||+|||+||.+|+++..|. ...
T Consensus 35 ~~~~g~~i~v~r~~~dG~~--~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~~~~~P~~~~~g~~~~~~~~~ 112 (138)
T cd03480 35 FTLLGRDLVIWWDRNSQQW--RAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGSCQRIPQAAEGGKAHTSPRAC 112 (138)
T ss_pred EEECCeeEEEEEECCCCEE--EEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCCEEECCCCccccccCCCcccc
Confidence 34567888899875 8987 899999999999998764 3469999999999999999998663 257
Q ss_pred CceEEEEEECCeEEEEeC
Q 027005 198 LALAHANVENGKVVFVPW 215 (229)
Q Consensus 198 L~~~~v~v~~g~I~V~~~ 215 (229)
|+.|++++++|.|||...
T Consensus 113 l~~ypv~v~~g~V~V~~~ 130 (138)
T cd03480 113 VASLPTAVRQGLLFVWPG 130 (138)
T ss_pred cceEeEEEECCEEEEecC
Confidence 999999999999999653
No 30
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.68 E-value=1.7e-16 Score=126.60 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=66.8
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCC--CEEEcCCCCeeEcCCCceecCCCC-------------CCC
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAE--NKFICPCHGSQYNNQGRVVRGPAP-------------LSL 198 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~--~~~~CPcHGs~FD~sG~vv~GPap-------------~~L 198 (229)
..+++++|++..+|++ +|+.|+|||+|++|.++..+ ..|.||+|||+||.+|+++..|.. .+|
T Consensus 21 ~~~~~i~v~r~~~g~v--~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p~~~~~~~~~~~~~~~~~L 98 (123)
T cd03536 21 MGSDSVIVARDKDGEI--HVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAPVEKECMHGKMRTKAELGL 98 (123)
T ss_pred ECCceEEEEECCCCCE--EEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECCccccccccCCCCHHHCCC
Confidence 3556788888778887 89999999999999875432 479999999999999999988763 468
Q ss_pred ceEEEEEECCeEEEEe
Q 027005 199 ALAHANVENGKVVFVP 214 (229)
Q Consensus 199 ~~~~v~v~~g~I~V~~ 214 (229)
..|++++.+|.|||.-
T Consensus 99 ~~~~v~~~~g~Ifv~~ 114 (123)
T cd03536 99 HKARVTLYGGLIFATW 114 (123)
T ss_pred cceeEEEECCEEEEEe
Confidence 9999999999999964
No 31
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.67 E-value=2.6e-16 Score=126.73 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=66.7
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCCC------------CCc
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPL------------SLA 199 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap~------------~L~ 199 (229)
..+++++|+++.+|++ +|+.|+|||+|++|..+. +.+.|.||||||+||.+|+++..|+.. .|+
T Consensus 29 ~~~~~i~l~r~~~g~i--~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~l~ 106 (128)
T cd03472 29 MGEDPVIVVRQKDGSI--RVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGNLVNVPFEKEAFCDGLDKADWGPL 106 (128)
T ss_pred ECCceEEEEECCCCCE--EEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcCEEeccCcccccccCCCHHHCCCc
Confidence 4567888998888987 899999999999998754 235899999999999999999998743 377
Q ss_pred eEEEEEECCeEEEEe
Q 027005 200 LAHANVENGKVVFVP 214 (229)
Q Consensus 200 ~~~v~v~~g~I~V~~ 214 (229)
.+++.+-.|.|||..
T Consensus 107 ~~~v~~~~g~vfv~~ 121 (128)
T cd03472 107 QARVETYKGLIFANW 121 (128)
T ss_pred ceeEeEECCEEEEEc
Confidence 788888899999964
No 32
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.67 E-value=3.3e-16 Score=122.69 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCCCceEEEEe-cCCeEEEEEEeccCCCCCcc-CCccC--C-CC--EEEcCCCCeeEcC-CCceecCCCCCCCceEEEEE
Q 027005 134 LKGDPTYLVVE-KDKTLASYGINAVCTHLGCV-VPWNS--A-EN--KFICPCHGSQYNN-QGRVVRGPAPLSLALAHANV 205 (229)
Q Consensus 134 ~~g~p~~lv~~-~dg~i~~~A~~~vCtHlGc~-l~~~~--~-~~--~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v 205 (229)
..+..+.|++. .+|++ ||++|.|||.|++ |..+. + ++ .+.||+||++||+ ||++...|. .+|+.|++++
T Consensus 23 v~g~~i~l~~~~~~g~~--~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~typV~v 99 (108)
T PRK09511 23 VGDEQVAIFRPYHDEQV--FAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYDARV 99 (108)
T ss_pred ECCEEEEEEEECCCCEE--EEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCcccCCCCC-ccEeeEeEEE
Confidence 34556777774 47777 9999999999996 77653 1 22 4999999999999 999997554 7999999999
Q ss_pred ECCeEEEE
Q 027005 206 ENGKVVFV 213 (229)
Q Consensus 206 ~~g~I~V~ 213 (229)
+||.|+|.
T Consensus 100 e~g~V~v~ 107 (108)
T PRK09511 100 KDGVVQLR 107 (108)
T ss_pred ECCEEEEe
Confidence 99999984
No 33
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.66 E-value=5.6e-16 Score=125.59 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=66.1
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcC-CCceecC---CC-----CCCCc
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRG---PA-----PLSLA 199 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~-sG~vv~G---Pa-----p~~L~ 199 (229)
....+.+++|++ .+|++ +|+.|+|||+|++|..+. +++.|.||+|||+||+ +|+++.. |. ...|+
T Consensus 32 ~~~~g~~i~l~r-~~g~v--~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~ 108 (136)
T cd03548 32 IQLCGEPILLRR-VDGKV--YALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLK 108 (136)
T ss_pred EEECCcEEEEEe-cCCEE--EEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCccEEEcccCCCccccccCCCc
Confidence 345667787776 68877 899999999999998653 4679999999999998 9999863 32 24799
Q ss_pred eEEEEEECCeEEEEe
Q 027005 200 LAHANVENGKVVFVP 214 (229)
Q Consensus 200 ~~~v~v~~g~I~V~~ 214 (229)
.|++++++|.|||..
T Consensus 109 ~ypv~~~~g~V~v~~ 123 (136)
T cd03548 109 TYPVEEAKGMIFVFV 123 (136)
T ss_pred eEeEEEECCEEEEEe
Confidence 999999999999964
No 34
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.65 E-value=6.7e-16 Score=123.91 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=68.6
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCC-----------C--CCC
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA-----------P--LSL 198 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPa-----------p--~~L 198 (229)
.+.+++++|+|..+|++ +|+.|+|+|+|++|..+. +++.|.||+|||+||.+|+++..|. + ..|
T Consensus 21 ~~~g~~ivl~r~~~g~v--~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~p~~~~~ 98 (123)
T cd03537 21 TLFGRPCVAWRGATGRA--VVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIPGHSTAVRRLEPVPRGARQ 98 (123)
T ss_pred EECCeEEEEEEccCCEE--EEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECCCCcccccccccCCccccc
Confidence 45677888999888887 899999999999998764 5688999999999999999987763 1 468
Q ss_pred ceEEEEEECCeEEEEe
Q 027005 199 ALAHANVENGKVVFVP 214 (229)
Q Consensus 199 ~~~~v~v~~g~I~V~~ 214 (229)
+.|++++.+|.|||..
T Consensus 99 ~~~pv~e~~G~Vwv~~ 114 (123)
T cd03537 99 PTLVTAERYGYVWVWY 114 (123)
T ss_pred ccEeEEEECCEEEEEc
Confidence 8999999999999964
No 35
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.65 E-value=1.1e-15 Score=121.83 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=68.9
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCCC----------CCceE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPL----------SLALA 201 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap~----------~L~~~ 201 (229)
.+.+++++|+|+.+|++ +|+.|+|+|+|++|..+. +++.|.||+|||+||++|+++..|... .|..+
T Consensus 21 ~~~g~~i~v~r~~dg~v--~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P~~~~~~~~~~~~~~L~~~ 98 (118)
T cd03541 21 RLGNVEYVVCRDGNGKL--HAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKATQATGIQNFNPKELGLVPL 98 (118)
T ss_pred EECCeEEEEEECCCCCE--EEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCCCcccccCCCHHHCCCceE
Confidence 45667899999888887 899999999999998765 456899999999999999999988543 57788
Q ss_pred EEEEECCeEEEEeC
Q 027005 202 HANVENGKVVFVPW 215 (229)
Q Consensus 202 ~v~v~~g~I~V~~~ 215 (229)
++++.+|.|||...
T Consensus 99 ~~~~~~g~vfv~~~ 112 (118)
T cd03541 99 KVAEWGPFVLISVD 112 (118)
T ss_pred eEEEECCEEEEEeC
Confidence 88888999999743
No 36
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.61 E-value=2.8e-15 Score=123.78 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=67.8
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC---------------
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP--------------- 195 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap--------------- 195 (229)
...+++++|+|+.+|++ +|+.|+|||+|++|..+. .++.|.||+|||+||++|+++..|+.
T Consensus 45 ~i~g~~iiv~r~~~g~v--~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~ 122 (150)
T cd03545 45 FVGDTPVVVTRAEDGSL--HAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDM 122 (150)
T ss_pred EECCceEEEEECCCCCE--EEEcccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCH
Confidence 34567888888778887 899999999999998653 35789999999999999999988742
Q ss_pred --CCCceEEEEEECCeEEEEe
Q 027005 196 --LSLALAHANVENGKVVFVP 214 (229)
Q Consensus 196 --~~L~~~~v~v~~g~I~V~~ 214 (229)
..|+.|++.+.+|.|||.-
T Consensus 123 ~~~~L~~~~v~~~~g~ifv~l 143 (150)
T cd03545 123 KQHGLEKLRVETVGGLVFASF 143 (150)
T ss_pred HHCCCcceeEeEECCEEEEEe
Confidence 3688999999999999963
No 37
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.60 E-value=3.8e-15 Score=118.81 Aligned_cols=78 Identities=28% Similarity=0.427 Sum_probs=64.0
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCC--CCEEEcCCCCeeEcCCCceecCCCCC------------CCc
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSA--ENKFICPCHGSQYNNQGRVVRGPAPL------------SLA 199 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~--~~~~~CPcHGs~FD~sG~vv~GPap~------------~L~ 199 (229)
..+++++|+++.+|++ +|+.|+|||+|++|..+.. .+.|.||+|||+||.+|+++..|+.. .|+
T Consensus 23 ~~~~~iiv~r~~~g~~--~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~~p~~~~~~~~~~~~~~~~L~ 100 (123)
T cd03535 23 IGDDSFIVCRDEDGEI--RAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVGVPAQQEAYGGGFDKSQWGLR 100 (123)
T ss_pred ECCeEEEEEECCCCCE--EEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEeeCCCcccccccCcCHHHCCCc
Confidence 3456788888778887 8999999999999987643 25899999999999999999887532 477
Q ss_pred eEE-EEEECCeEEEE
Q 027005 200 LAH-ANVENGKVVFV 213 (229)
Q Consensus 200 ~~~-v~v~~g~I~V~ 213 (229)
.++ +++.+|.|||.
T Consensus 101 ~~~~~e~~~g~vfv~ 115 (123)
T cd03535 101 PAPNLDSYNGLIFGS 115 (123)
T ss_pred cceeEEEECCEEEEE
Confidence 786 45679999995
No 38
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.58 E-value=8e-15 Score=118.23 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=65.7
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCC-----------------
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPA----------------- 194 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPa----------------- 194 (229)
..+.+++++|+.||++ +|+.|+|+|+|.+|..+. +.+.|.||+|||+||++|+++.-|.
T Consensus 21 ~~~~~v~v~r~~dg~v--~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p~~~~~~~~~~~~~~~~~~ 98 (129)
T cd03539 21 IGERSVIMTRDPDGGI--NVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVPFRRGVKKDGKVNGGMPKD 98 (129)
T ss_pred ECCcEEEEEECCCCCE--EEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeeccccccccccccccccccCC
Confidence 3456778888888887 899999999999998653 3368999999999999999998664
Q ss_pred ----CCCCceEEEEEECCeEEEEe
Q 027005 195 ----PLSLALAHANVENGKVVFVP 214 (229)
Q Consensus 195 ----p~~L~~~~v~v~~g~I~V~~ 214 (229)
...|..+++++.+|.|||..
T Consensus 99 ~~~~~~~L~~~~v~~~~g~Ifv~~ 122 (129)
T cd03539 99 FKTKDHGLTKLKVATRGGVVFASF 122 (129)
T ss_pred cChHHCCCceeeEeEECCEEEEEe
Confidence 23688999999999999964
No 39
>PLN02281 chlorophyllide a oxygenase
Probab=99.58 E-value=7.4e-15 Score=142.04 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=71.5
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCC----CCCceEEEEEE
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP----LSLALAHANVE 206 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap----~~L~~~~v~v~ 206 (229)
..+.|.+++|+|..+|++ +|+.|+|+|+|++|..+. +++.|.||+|||+||.+|+++..|.. ..|..|+++++
T Consensus 238 v~llG~~IVL~R~~dG~v--~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~ 315 (536)
T PLN02281 238 IECFEQPWVIFRGEDGKP--GCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQ 315 (536)
T ss_pred EEECCEEEEEEECCCCeE--EEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEE
Confidence 345778899999888987 899999999999999765 56899999999999999999998864 35889999999
Q ss_pred CCeEEEEeC
Q 027005 207 NGKVVFVPW 215 (229)
Q Consensus 207 ~g~I~V~~~ 215 (229)
+|.|||.+.
T Consensus 316 ~GlVwV~lg 324 (536)
T PLN02281 316 EGMIWIWPG 324 (536)
T ss_pred CCEEEEEeC
Confidence 999999653
No 40
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.56 E-value=7.1e-15 Score=114.65 Aligned_cols=78 Identities=24% Similarity=0.409 Sum_probs=66.5
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCC-CCccCCccC-C----CCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTH-LGCVVPWNS-A----ENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANV 205 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtH-lGc~l~~~~-~----~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v 205 (229)
...+..++|++..++++ ||++|.||| .+-+|+.+. + +..+.||+|+++||+ +|+++..|. .+|++|++++
T Consensus 20 ~v~g~~Ialf~~~~~~v--yAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~~ypvrv 96 (104)
T PF13806_consen 20 EVDGRQIALFRVRDGEV--YAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGECLEDPD-VSLRTYPVRV 96 (104)
T ss_dssp EETTEEEEEEEESTTEE--EEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTEESSECS-EBSBEEEEEE
T ss_pred EECCeEEEEEEeCCCCE--EEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcCcCCCCC-CcEEeEEEEE
Confidence 34567788888767887 999999999 799998763 2 248999999999999 999998666 8999999999
Q ss_pred ECCeEEEE
Q 027005 206 ENGKVVFV 213 (229)
Q Consensus 206 ~~g~I~V~ 213 (229)
+||.|+|.
T Consensus 97 ~~g~V~V~ 104 (104)
T PF13806_consen 97 EDGQVYVE 104 (104)
T ss_dssp CTTEEEEE
T ss_pred ECCEEEEC
Confidence 99999984
No 41
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=99.56 E-value=1.4e-14 Score=135.34 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=71.8
Q ss_pred ccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCCC------CCceEE
Q 027005 130 LTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPL------SLALAH 202 (229)
Q Consensus 130 ~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap~------~L~~~~ 202 (229)
....+.|.+++|+++.+|++ +|+.|+|+|+||+|+.+. +++.|.||+|||+||.+|+++..|... .+..|+
T Consensus 89 ~~f~L~GepIVL~Rd~dGqv--~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~C~~iP~~~~~~~~~~v~tYP 166 (394)
T PLN00095 89 IAFDLFNVPWVLFRDADGEA--GCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGECAKMPSCKKFLKGVFADAAP 166 (394)
T ss_pred EEEEECCEEEEEEECCCCCE--EEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCCEeeCCCccccccccccceEE
Confidence 33456788999999888887 899999999999998764 568999999999999999999988643 257999
Q ss_pred EEEECCeEEEEeC
Q 027005 203 ANVENGKVVFVPW 215 (229)
Q Consensus 203 v~v~~g~I~V~~~ 215 (229)
+++++|.|||-+.
T Consensus 167 V~e~dGlVwVw~G 179 (394)
T PLN00095 167 VIERDGFIFLWAG 179 (394)
T ss_pred EEEECCEEEEEeC
Confidence 9999999999654
No 42
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.56 E-value=1.7e-14 Score=118.58 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=66.1
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcCCCceecCCCC-------------
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNNQGRVVRGPAP------------- 195 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~sG~vv~GPap------------- 195 (229)
....+.+++|++..+|++ +|+.|+|||+|++|.++. .++.|.||+|||+||.+|+++..|+.
T Consensus 41 ~~i~g~~i~v~r~~~g~v--~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~ 118 (146)
T cd03538 41 TRIGDQPVVMVRHTDGSV--HVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHA 118 (146)
T ss_pred EEECCeeEEEEECCCCCE--EEEeccCcCCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchh
Confidence 345678899999878887 899999999999996543 24579999999999999999988852
Q ss_pred -CCCceE-EEEEECCeEEEEe
Q 027005 196 -LSLALA-HANVENGKVVFVP 214 (229)
Q Consensus 196 -~~L~~~-~v~v~~g~I~V~~ 214 (229)
..|..+ .+++.+|.|||.-
T Consensus 119 ~~~L~~~~~v~~~~g~ifv~~ 139 (146)
T cd03538 119 DKGMQRVGAVDIYRGFVFARL 139 (146)
T ss_pred hCCCCcceeEEEECCEEEEEc
Confidence 246666 6788899999964
No 43
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.54 E-value=4.5e-14 Score=113.04 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=60.3
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC--------------CC
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP--------------LS 197 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap--------------~~ 197 (229)
..+.+++|+|..+|++ +|+.|+|||+|++|..+. +.+.|.||+|||+||.+|+++..|.. ..
T Consensus 21 ~~~~~i~l~r~~~g~v--~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p~~~~~~y~~~~~~~~~~~ 98 (123)
T cd03542 21 IGRQPVVITRDKDGEL--NAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVKDPKTAGYPEGFNCDGSHD 98 (123)
T ss_pred ECCcEEEEEECCCCCE--EEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECCcccccCcCcccChhhcCC
Confidence 4567788898878887 899999999999998753 34589999999999999999976631 13
Q ss_pred CceEE-EEEECCeEEEEe
Q 027005 198 LALAH-ANVENGKVVFVP 214 (229)
Q Consensus 198 L~~~~-v~v~~g~I~V~~ 214 (229)
|..++ ++...|.||+..
T Consensus 99 L~~~~~~~~~~g~v~~~~ 116 (123)
T cd03542 99 LTKVARFESYRGFLFGSL 116 (123)
T ss_pred CccceeEEEECCEEEEEc
Confidence 44442 344468888864
No 44
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.48 E-value=1.3e-13 Score=108.41 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=56.6
Q ss_pred CCCceEEEEecCCeEEEEEEeccCCCCCccCCcc---CCCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEE
Q 027005 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN---SAENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVE 206 (229)
Q Consensus 135 ~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~---~~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~ 206 (229)
.+..+.|++ .+|++ ||++|.|||+|++|..+ .+++.+.||+|||+||+ +|+++..|+..+...+.++++
T Consensus 29 ~g~~I~V~~-~~G~~--~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~~~~~~~~~~~~ 101 (107)
T cd03473 29 DGKKYIIYK-SKSEL--KACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDSFCQDELVVEYD 101 (107)
T ss_pred CCcEEEEEE-ECCEE--EEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCcccccceeEEEEc
Confidence 455677776 47877 99999999999998763 35678999999999999 999999888777777766664
No 45
>PLN02518 pheophorbide a oxygenase
Probab=99.41 E-value=1.1e-12 Score=127.79 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=70.2
Q ss_pred ccccCCCCceEEEEe-cCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC-----------
Q 027005 130 LTEGLKGDPTYLVVE-KDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP----------- 195 (229)
Q Consensus 130 ~~~~~~g~p~~lv~~-~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap----------- 195 (229)
....+.|++++|+|+ .+|++ +|+.|+|+|+|++|+.+. +++.|.||+|||+||.+|+++.-|..
T Consensus 106 ~~~~llG~~lVl~Rd~~~G~~--~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~G~c~~IP~~~~~~~~~~~~~ 183 (539)
T PLN02518 106 TPFQLLGRDLVLWKDPNQGEW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVK 183 (539)
T ss_pred EEEEECCEEEEEEEECCCCeE--EEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCCCCeeeccccccccccccccc
Confidence 334567889999997 78887 799999999999999874 35799999999999999999875521
Q ss_pred ---CCCceEEEEEECCeEEEEeC
Q 027005 196 ---LSLALAHANVENGKVVFVPW 215 (229)
Q Consensus 196 ---~~L~~~~v~v~~g~I~V~~~ 215 (229)
..+..|++++.+|.|||.+.
T Consensus 184 ~~~a~v~sypv~e~~GlIwV~~~ 206 (539)
T PLN02518 184 SPRACAIKFPTMVSQGLLFVWPD 206 (539)
T ss_pred CcccccceEeEEEECCEEEEEeC
Confidence 24889999999999999654
No 46
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.34 E-value=3.2e-12 Score=117.83 Aligned_cols=87 Identities=25% Similarity=0.397 Sum_probs=72.9
Q ss_pred ccccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CC-CEEEcCCCCeeEcCCCceecCCC-----C-----
Q 027005 128 RTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AE-NKFICPCHGSQYNNQGRVVRGPA-----P----- 195 (229)
Q Consensus 128 ~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~-~~~~CPcHGs~FD~sG~vv~GPa-----p----- 195 (229)
..+...+.+++++|+|+.||++ .|+.|+|+|+|..|..+. .+ +.|.||+|||+||.+|+++.-|. .
T Consensus 41 ~~~~~~i~g~~lvi~R~~dg~~--~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~ 118 (367)
T COG4638 41 DPLTVRIGGEPLVVVRDKDGQV--HALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSE 118 (367)
T ss_pred CceeEEEcCeEEEEEECCCCCE--EEEeccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhh
Confidence 3444556788999999999997 799999999999998865 44 79999999999999999998772 1
Q ss_pred CCCceEEEEEECCeEEEEeCc
Q 027005 196 LSLALAHANVENGKVVFVPWT 216 (229)
Q Consensus 196 ~~L~~~~v~v~~g~I~V~~~~ 216 (229)
..|..|++++..|.|||.+..
T Consensus 119 ~~l~~~~~~~~~G~Iwi~~~~ 139 (367)
T COG4638 119 HGLKRYPVEERYGFIWIWLGD 139 (367)
T ss_pred CCccccceEEEccEEEEecCC
Confidence 248889999999999996543
No 47
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=99.28 E-value=8.9e-12 Score=118.87 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=66.4
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCc-cC-CCCEEEcCCCCeeEcCCCceecCCCC-----------CCCc
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPW-NS-AENKFICPCHGSQYNNQGRVVRGPAP-----------LSLA 199 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~-~~-~~~~~~CPcHGs~FD~sG~vv~GPap-----------~~L~ 199 (229)
...++|++|+|+.||++ +|+.|+|+|+|+.|.. +. ....|.||+|||+||.+|++++-|.+ ..|.
T Consensus 58 ~ig~~pviv~R~~dG~i--~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~ 135 (438)
T TIGR03228 58 RAGRQPMIVTRDGKGEL--HALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLK 135 (438)
T ss_pred EECCeEEEEEECCCCCE--EEEcccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCc
Confidence 45678999999999998 7999999999999975 33 33579999999999999999976643 2477
Q ss_pred eEEEEEECCeEEEEeC
Q 027005 200 LAHANVENGKVVFVPW 215 (229)
Q Consensus 200 ~~~v~v~~g~I~V~~~ 215 (229)
.+++..-.|.||+...
T Consensus 136 ~~rv~~y~GfIFv~l~ 151 (438)
T TIGR03228 136 KARIASYRGFVFVSLD 151 (438)
T ss_pred ceeEEEECCEEEEEeC
Confidence 7777778999999643
No 48
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=99.27 E-value=1.8e-11 Score=116.72 Aligned_cols=81 Identities=21% Similarity=0.398 Sum_probs=64.6
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC--------------C
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP--------------L 196 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap--------------~ 196 (229)
...+.|++|+|+.||++ +|+.|+|+|+|+.|..+. +...|.||+|||+||.+|++++-|.+ .
T Consensus 58 ~~~~~~vvv~R~~dG~i--~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~ 135 (433)
T TIGR03229 58 YMGRQPIFIARNKDGEL--NAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSH 135 (433)
T ss_pred EECCeEEEEEECCCCcE--EEEeCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhc
Confidence 35678899999889988 799999999999998653 34689999999999999999988753 1
Q ss_pred CCceEE-EEEECCeEEEEeC
Q 027005 197 SLALAH-ANVENGKVVFVPW 215 (229)
Q Consensus 197 ~L~~~~-v~v~~g~I~V~~~ 215 (229)
.|..++ ++.-.|.||+...
T Consensus 136 ~L~~v~rve~y~GfIFv~l~ 155 (433)
T TIGR03229 136 DLKKVARFESYRGFLFGSLN 155 (433)
T ss_pred CCccceEEEEECCEEEEEcC
Confidence 355553 4555899999643
No 49
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=99.12 E-value=2.6e-11 Score=78.97 Aligned_cols=39 Identities=69% Similarity=1.169 Sum_probs=30.6
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCC
Q 027005 58 DRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG 96 (229)
Q Consensus 58 ~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~ 96 (229)
|++|||+||+||+++++|++++.++++++|+++|++||.
T Consensus 1 d~VPdm~RR~lmN~ll~Gava~~a~~~lyP~~~ffvPP~ 39 (39)
T PF08802_consen 1 DRVPDMSRRQLMNLLLGGAVAVPAGGMLYPYVKFFVPPS 39 (39)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CCCCChhHHHHHHHHHHhhHHHHHHHHhhhheeEecCCC
Confidence 579999999999999999999999999999999999973
No 50
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=98.41 E-value=1.9e-07 Score=61.64 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCC
Q 027005 58 DRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP 95 (229)
Q Consensus 58 ~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp 95 (229)
++..+.+||+||..++.++++++++++++||+.+|.|+
T Consensus 4 ~~~~~~~RRdFL~~at~~~gavG~~~~a~Pfv~s~~Ps 41 (41)
T PF10399_consen 4 NEPVDPTRRDFLTIATSAVGAVGAAAAAWPFVSSMNPS 41 (41)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34557899999999999999999999999999999984
No 51
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=95.64 E-value=0.017 Score=41.88 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=16.8
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHH
Q 027005 59 RVPDMGKRQLMNLLLLGAVSLPTG 82 (229)
Q Consensus 59 ~~pd~~RR~FL~~~~~Ga~al~~a 82 (229)
..+.++||+||+.+++++.+++++
T Consensus 5 ~~~~~sRR~Flk~lg~~aaa~~aa 28 (66)
T TIGR02811 5 QKADPSRRDLLKGLGVGAAAGAVA 28 (66)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHH
Confidence 445679999999977666544433
No 52
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.40 E-value=0.013 Score=56.87 Aligned_cols=51 Identities=29% Similarity=0.503 Sum_probs=41.1
Q ss_pred CCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEEC-CeEEE
Q 027005 160 HLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVEN-GKVVF 212 (229)
Q Consensus 160 HlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~-g~I~V 212 (229)
|.|.+|..+. ..+.+.||+||..|+. +|.+..=|+-..| ..+.+++ +++.+
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~sl--~~v~~~~~~~~m~ 54 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDSL--SRVVVDNDGQVMQ 54 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccce--eeEEecCccceee
Confidence 8888987764 5789999999999999 9999999998888 5555554 55554
No 53
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=95.29 E-value=0.018 Score=34.34 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHhH
Q 027005 63 MGKRQLMNLLLLGAVS 78 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~a 78 (229)
++||+||+..+..+++
T Consensus 2 ~sRR~fLk~~~a~~a~ 17 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAA 17 (26)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6899999986654443
No 54
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=93.02 E-value=0.078 Score=32.12 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHHHhHH
Q 027005 63 MGKRQLMNLLLLGAVSL 79 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~al 79 (229)
++||+||+.+..+++++
T Consensus 1 ~sRR~Flk~~~~~~a~~ 17 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAA 17 (29)
T ss_pred CchhhhHHHHHHHHHHH
Confidence 47999999986665543
No 55
>PRK09898 hypothetical protein; Provisional
Probab=85.51 E-value=0.41 Score=41.32 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhcc
Q 027005 63 MGKRQLMNLLLLGAVSLPTGFMLVPY 88 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~al~~a~~~~P~ 88 (229)
++||+||+.++.+++++++++.++.+
T Consensus 13 ~~RR~flk~~~~~~~g~~~~~~~~~~ 38 (208)
T PRK09898 13 LTRLEFLRISGKGLAGLTIAPALLSL 38 (208)
T ss_pred hhHHHHHHhhcchhhhhhhhhHHHHh
Confidence 79999999987666665555544443
No 56
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=71.83 E-value=3.8 Score=36.47 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHHHH
Q 027005 62 DMGKRQLMNLLLLGA 76 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga 76 (229)
+++||+||+.+++++
T Consensus 2 ~~~RR~flk~~~~~~ 16 (244)
T PRK14993 2 DSSKRQFLQQLGVLT 16 (244)
T ss_pred CccHHHHHHHHHHHH
Confidence 578999999765433
No 57
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=71.61 E-value=3.9 Score=41.96 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=16.4
Q ss_pred ccCCCCC-CCCcchHHHHHHHHHHHhH
Q 027005 53 TSIPADR-VPDMGKRQLMNLLLLGAVS 78 (229)
Q Consensus 53 ~~~~~~~-~pd~~RR~FL~~~~~Ga~a 78 (229)
+.||+.- ..+++||+||+.+.+++++
T Consensus 3 ~~~~~~~~~~~~sRR~FLk~~~~~~a~ 29 (814)
T PRK14990 3 TKIPDAVLAAEVSRRGLVKTTAIGGLA 29 (814)
T ss_pred CcCccchhccCccHHHHHHHHHHHHHH
Confidence 3455432 2378999999986544443
No 58
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=71.11 E-value=22 Score=27.83 Aligned_cols=69 Identities=16% Similarity=0.408 Sum_probs=46.8
Q ss_pred ceEEEEecCCeEEEEEEe--ccCCCCCccCCccCCCCEEEcCCCCeeEcC-C-CceecCCCCCCCceEEEEEECCeEEEE
Q 027005 138 PTYLVVEKDKTLASYGIN--AVCTHLGCVVPWNSAENKFICPCHGSQYNN-Q-GRVVRGPAPLSLALAHANVENGKVVFV 213 (229)
Q Consensus 138 p~~lv~~~dg~i~~~A~~--~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-s-G~vv~GPap~~L~~~~v~v~~g~I~V~ 213 (229)
+.++++..||.+. .|++ .+| -.-.|..+++.+.|---|-+|.+ + |...+|=-|-|| +.+++++.|.|.
T Consensus 20 rff~i~~~dg~~~-va~daCeiC----~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P~---~~~~~~~~I~I~ 91 (102)
T PF10080_consen 20 RFFAIKKPDGSYR-VAFDACEIC----GPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNPIPL---PYTVDGGNIIID 91 (102)
T ss_pred EEEEEECCCCCEE-EEEEecccc----CCCceEEECCEEEEecCCCEEehhhcccccCCCCccCC---ceEecCCeEEEe
Confidence 4667777888874 3444 566 22234456789999999999998 3 644555222333 888999999995
Q ss_pred e
Q 027005 214 P 214 (229)
Q Consensus 214 ~ 214 (229)
.
T Consensus 92 ~ 92 (102)
T PF10080_consen 92 Q 92 (102)
T ss_pred H
Confidence 3
No 59
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=69.54 E-value=3.2 Score=38.73 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.0
Q ss_pred cchHHHHHHHHHH
Q 027005 63 MGKRQLMNLLLLG 75 (229)
Q Consensus 63 ~~RR~FL~~~~~G 75 (229)
|+||+||+.++++
T Consensus 1 ~~RR~fl~~~~~~ 13 (328)
T PRK10882 1 MNRRNFLKAASAG 13 (328)
T ss_pred CCHHHHHHHHHHH
Confidence 6899999976433
No 60
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=67.93 E-value=6.2 Score=35.36 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=15.5
Q ss_pred CCcchHHHHHHHHHHHhHHHHHHh
Q 027005 61 PDMGKRQLMNLLLLGAVSLPTGFM 84 (229)
Q Consensus 61 pd~~RR~FL~~~~~Ga~al~~a~~ 84 (229)
..++||+||..+..++++++++++
T Consensus 7 ~~~~rr~f~~~~~~~~~~~~~~~~ 30 (254)
T PRK09476 7 PQNGRRRFLRDVVRTAGGLAAVGV 30 (254)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHH
Confidence 468999999887654444444443
No 61
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=60.50 E-value=5.6 Score=37.82 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=14.7
Q ss_pred CcchHHHHHHHHHHHhHHHH
Q 027005 62 DMGKRQLMNLLLLGAVSLPT 81 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~al~~ 81 (229)
.++||+||+++...+++++.
T Consensus 14 g~sRR~FlK~~~~~~a~~~l 33 (365)
T TIGR00391 14 GINRRDFLKLCAALATTLGL 33 (365)
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 68999999998765544443
No 62
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=59.67 E-value=6 Score=37.68 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=18.2
Q ss_pred CcchHHHHHHHHHHHhHHHHHHhhhcc
Q 027005 62 DMGKRQLMNLLLLGAVSLPTGFMLVPY 88 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~al~~a~~~~P~ 88 (229)
.++||+||+++...+++++....+.|-
T Consensus 12 g~sRR~Flk~~~~~~a~~gl~~~~~~~ 38 (371)
T PRK10468 12 GINRRDFMKLCAALAATMGLSSKAAAE 38 (371)
T ss_pred CCcHHHHHHHHHHHHHHhCCChhhHHH
Confidence 789999999987655554444444443
No 63
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=52.59 E-value=11 Score=38.39 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=9.7
Q ss_pred cchHHHHHHHHH
Q 027005 63 MGKRQLMNLLLL 74 (229)
Q Consensus 63 ~~RR~FL~~~~~ 74 (229)
++||+||+.+++
T Consensus 1 ~~RR~Flk~~~~ 12 (797)
T TIGR02166 1 ISRRHFLKTSAA 12 (797)
T ss_pred CCHHHHHHHHHH
Confidence 589999997653
No 64
>TIGR01412 tat_substr_1 Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.
Probab=51.34 E-value=13 Score=35.79 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=14.3
Q ss_pred CCCCcchHHHHHHHHHHHh
Q 027005 59 RVPDMGKRQLMNLLLLGAV 77 (229)
Q Consensus 59 ~~pd~~RR~FL~~~~~Ga~ 77 (229)
..+.++||+||+++++|++
T Consensus 4 ~~~~~~rr~~~~~~~~~~~ 22 (414)
T TIGR01412 4 APQQPSRRTLLKTAGAAGA 22 (414)
T ss_pred ccCCccHHHHHHhhhhhhh
Confidence 3456899999999766544
No 65
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=49.15 E-value=13 Score=37.89 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHHHHh
Q 027005 62 DMGKRQLMNLLLLGAV 77 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~ 77 (229)
.|+||+||+.+.++++
T Consensus 2 ~~sRR~Flk~~~~~~~ 17 (759)
T PRK15488 2 SLSRRDFLKGAGAGCA 17 (759)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4799999998755444
No 66
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=43.80 E-value=16 Score=37.45 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhccc
Q 027005 63 MGKRQLMNLLLLGAVSLPTGFMLVPYA 89 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~al~~a~~~~P~~ 89 (229)
++||+||+.++.+++++++ +++-|.+
T Consensus 1 ~~RR~fl~~~a~~~~a~~~-~~~p~si 26 (690)
T TIGR03396 1 ISRRDFLKLAAAGGAAAAA-AALPPSI 26 (690)
T ss_pred CCHHHHHHHHHHHHHHHHH-hcCCHHH
Confidence 4799999887644444333 4444444
No 67
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=40.79 E-value=28 Score=29.36 Aligned_cols=8 Identities=25% Similarity=0.792 Sum_probs=7.0
Q ss_pred CcchHHHH
Q 027005 62 DMGKRQLM 69 (229)
Q Consensus 62 d~~RR~FL 69 (229)
.++||+||
T Consensus 1 g~sRR~~L 8 (168)
T PF12318_consen 1 GLSRRRLL 8 (168)
T ss_pred CCcHHHHH
Confidence 47899999
No 68
>PRK02888 nitrous-oxide reductase; Validated
Probab=40.28 E-value=31 Score=35.21 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=13.0
Q ss_pred CCCCCcchHHHHHHHHHH
Q 027005 58 DRVPDMGKRQLMNLLLLG 75 (229)
Q Consensus 58 ~~~pd~~RR~FL~~~~~G 75 (229)
+...+++||+||+.+.++
T Consensus 4 ~~~~~~~rr~~~~~~~~~ 21 (635)
T PRK02888 4 EAPSGLSRRQFLGTAALA 21 (635)
T ss_pred cccCCccHHHhhhHHHHH
Confidence 355688999999775433
No 69
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=39.60 E-value=19 Score=37.27 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHH
Q 027005 63 MGKRQLMNLLLLG 75 (229)
Q Consensus 63 ~~RR~FL~~~~~G 75 (229)
++||+||+.+.+.
T Consensus 1 ~sRR~flk~~~~~ 13 (825)
T PRK15102 1 ASRRRFLKGLGGL 13 (825)
T ss_pred CCHHHHHHHHHHH
Confidence 5899999975533
No 70
>PRK13747 putative mercury resistance protein; Provisional
Probab=38.96 E-value=9.4 Score=28.46 Aligned_cols=8 Identities=50% Similarity=1.327 Sum_probs=6.9
Q ss_pred EEEcCCCC
Q 027005 173 KFICPCHG 180 (229)
Q Consensus 173 ~~~CPcHG 180 (229)
.+.||||=
T Consensus 25 vLTCPCHL 32 (78)
T PRK13747 25 VLTCPCHL 32 (78)
T ss_pred HhcCcchH
Confidence 68999995
No 71
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=38.34 E-value=27 Score=37.38 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHhH
Q 027005 63 MGKRQLMNLLLLGAVS 78 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~a 78 (229)
++||+||+.+++++++
T Consensus 2 ~sRR~FLk~~g~~~~~ 17 (1009)
T TIGR01553 2 ISRRAFLKLTAGGATL 17 (1009)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6899999987654443
No 72
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=38.03 E-value=22 Score=25.42 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.1
Q ss_pred CEEEcCCCCeeEcCC
Q 027005 172 NKFICPCHGSQYNNQ 186 (229)
Q Consensus 172 ~~~~CPcHGs~FD~s 186 (229)
-.|.||-||.....+
T Consensus 31 vtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 31 VTIRCPKHGNFTCST 45 (60)
T ss_pred eEEECCCCCcEEecc
Confidence 479999999887753
No 73
>PRK00420 hypothetical protein; Validated
Probab=37.84 E-value=28 Score=27.77 Aligned_cols=34 Identities=21% Similarity=0.495 Sum_probs=25.3
Q ss_pred EeccCCCCCccCCccCCCCEEEcCCCCeeEcC-CCc
Q 027005 154 INAVCTHLGCVVPWNSAENKFICPCHGSQYNN-QGR 188 (229)
Q Consensus 154 ~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-sG~ 188 (229)
++..||.=|.++- ...++..+||-||..+.. +++
T Consensus 22 l~~~CP~Cg~pLf-~lk~g~~~Cp~Cg~~~~v~~~e 56 (112)
T PRK00420 22 LSKHCPVCGLPLF-ELKDGEVVCPVHGKVYIVKSDE 56 (112)
T ss_pred ccCCCCCCCCcce-ecCCCceECCCCCCeeeeccHH
Confidence 4578999777663 225679999999998887 554
No 74
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=35.89 E-value=22 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=15.1
Q ss_pred CcchHHHHHHHHHHHhHHHHHH
Q 027005 62 DMGKRQLMNLLLLGAVSLPTGF 83 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~al~~a~ 83 (229)
+++||+||+++..-++.+++..
T Consensus 12 g~~Rr~f~k~~~~~~a~l~L~~ 33 (355)
T COG1740 12 GITRRDFLKLCGALAASLGLSA 33 (355)
T ss_pred CCcHHHHHHHHHHHHHHhccCc
Confidence 5899999999765554444333
No 75
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=35.40 E-value=21 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=19.4
Q ss_pred cCCCCCccCCccCCCCEEEcC-CCCeeEcC-CCce
Q 027005 157 VCTHLGCVVPWNSAENKFICP-CHGSQYNN-QGRV 189 (229)
Q Consensus 157 vCtHlGc~l~~~~~~~~~~CP-cHGs~FD~-sG~v 189 (229)
.|.|=+-.+ ..+...+.|| ||+-.|+. +|+-
T Consensus 72 ~C~~C~~~~--~~e~~~~~CP~C~s~~~~i~~G~e 104 (115)
T COG0375 72 WCLDCGQEV--ELEELDYRCPKCGSINLRIIGGDE 104 (115)
T ss_pred EeccCCCee--cchhheeECCCCCCCceEEecCCe
Confidence 354433333 2344567799 99999998 7763
No 76
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.42 E-value=40 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=25.3
Q ss_pred EeccCCCCCccCCccCCCCEEEcCCCCeeEcC
Q 027005 154 INAVCTHLGCVVPWNSAENKFICPCHGSQYNN 185 (229)
Q Consensus 154 ~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~ 185 (229)
.|..|++=|-..........|.||-.|..+|.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECc
Confidence 47889988877765456789999988888886
No 77
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=32.82 E-value=13 Score=27.52 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=8.3
Q ss_pred EEEcCCCCeeEc
Q 027005 173 KFICPCHGSQYN 184 (229)
Q Consensus 173 ~~~CPcHGs~FD 184 (229)
.+.||||=-.-.
T Consensus 25 ~lTCPCHLpil~ 36 (75)
T PF05052_consen 25 LLTCPCHLPILA 36 (75)
T ss_pred HhhCcchHHHHH
Confidence 589999954433
No 78
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=32.50 E-value=97 Score=30.83 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHH--hHHHHHHhhhccccccCC
Q 027005 62 DMGKRQLMNLLLLGA--VSLPTGFMLVPYATFFAP 94 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga--~al~~a~~~~P~~~~l~P 94 (229)
-++||.|++...+.. +++.++++.+|++.++.-
T Consensus 36 ~~s~RGl~Nlg~LilL~lGLL~LFigyPIlt~~~~ 70 (504)
T PF03935_consen 36 IFSRRGLLNLGGLILLILGLLMLFIGYPILTFFGK 70 (504)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhhheeEEec
Confidence 378999999865444 455566777899988644
No 79
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=32.39 E-value=7.1 Score=34.26 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=41.6
Q ss_pred CcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCC---CCCceeecCCCCceeeecccccCCCCCccccccCCCCc
Q 027005 62 DMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSA---GGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDP 138 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~---~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p 138 (229)
..+||.|..++.+|++++..+..+--.+..++......+ +.+.+++ ....+|+..+++..|.|+|
T Consensus 42 ~~~~k~~~sy~~~g~~~~~~a~~ak~~v~~fi~smsAsadvlA~akiei------------~l~~IPeGk~~~~kwrGkp 109 (210)
T KOG1671|consen 42 GEERKGFRSYLMVGAGAAGRAYAAKNLVTTFISSMSASADVLAMAKIEI------------KLSDIPEGKTVAFKWRGKP 109 (210)
T ss_pred hhhhhceeeEEEecccceeehhhhhhhHHHHHHHhhhhhhhhhheeeee------------eeecCCCCCCcceeccCCc
Confidence 446778877777777765555444333333333221110 0111111 1133566677888999999
Q ss_pred eEEEEecCCeE
Q 027005 139 TYLVVEKDKTL 149 (229)
Q Consensus 139 ~~lv~~~dg~i 149 (229)
+++.+....++
T Consensus 110 vfirhrt~~ei 120 (210)
T KOG1671|consen 110 VFIRHRTKAEI 120 (210)
T ss_pred eEEeecccccc
Confidence 99987655444
No 80
>PF02959 Tax: HTLV Tax; InterPro: IPR004120 Human T-lymphotropic virus 1 is the etiological agent for adult T-cell leukemia (ATL), as well as for tropical spastic paraparesis (TSP) and HTLV-I associate myelopathy (HAM). A biological understanding of the involvement of HTLV-I and in ATL has focused significantly on the workings of the virally-encoded 40 kDa phospho-oncoprotein, Tat. Tat is a transcriptional activator. Its ability to modulate the expression and function of many cellular genes has been reasoned to be a major contributory mechanism explaining HTLV-I mediated transformation of cells. In activating cellular gene expression, Tat impinges upon several cellular signal-transduction pathways, including those for CREB/ATF and NF-kappaB [].; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 1HHK_C 1AO7_C 2AV7_F.
Probab=32.33 E-value=15 Score=31.87 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred ccCCCCC--ccCCccCCCCEEEcCCCCeeEcC-CCceecCCCC---CCCceEEEEEEC
Q 027005 156 AVCTHLG--CVVPWNSAENKFICPCHGSQYNN-QGRVVRGPAP---LSLALAHANVEN 207 (229)
Q Consensus 156 ~vCtHlG--c~l~~~~~~~~~~CPcHGs~FD~-sG~vv~GPap---~~L~~~~v~v~~ 207 (229)
+.|+--| |........-...||-|.-++|. |||+++.+-. -.|+.++.+-..
T Consensus 25 dwcp~~g~~~~~r~~r~~~~~tc~~h~itw~p~dgr~~~s~~~~l~prL~~~ptqrt~ 82 (222)
T PF02959_consen 25 DWCPISGGLCSLRLHRHALLATCPEHQITWDPIDGRVVGSPLQYLIPRLPSFPTQRTT 82 (222)
T ss_dssp ----------------------------------------------------------
T ss_pred ccccccCccchhhhhhhhhhccCccceeeecccCCeeccchhhhhcccCCCCcccccc
Confidence 4677666 55555556678999999999996 9999985422 145566554433
No 81
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=32.12 E-value=32 Score=35.55 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHHHHh
Q 027005 62 DMGKRQLMNLLLLGAV 77 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~ 77 (229)
.++||+||+....+++
T Consensus 2 ~~~RR~Flk~~a~~aa 17 (830)
T PRK13532 2 KLSRRDFMKANAAAAA 17 (830)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 3799999998764443
No 82
>TIGR02659 TTQ_MADH_Lt methylamine dehydrogenase light chain. This family consists of the light chain of methylamine dehydrogenase light chain, a periplasmic enzyme. This subunit contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from Trp-114 and Trp-165 of the precursor, numbered according to the sequence from Paracoccus denitrificans. The enzyme forms a complex with the type I blue copper protein amicyanin and cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.95 E-value=32 Score=29.76 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=16.3
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhcccc
Q 027005 63 MGKRQLMNLLLLGAVSLPTGFMLVPYAT 90 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~al~~a~~~~P~~~ 90 (229)
.+||.||.+++...++ +++..++|+.+
T Consensus 22 tsRRs~l~~lG~~l~g-~a~~PlLPv~R 48 (186)
T TIGR02659 22 TSRRGFIGRLGTALAG-SALVPLLPVDR 48 (186)
T ss_pred cchHHHHHHHHHHHhh-hhhccccccch
Confidence 4899999997644333 22344456543
No 83
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=31.69 E-value=44 Score=29.22 Aligned_cols=11 Identities=9% Similarity=0.156 Sum_probs=8.5
Q ss_pred cchHHHHHHHH
Q 027005 63 MGKRQLMNLLL 73 (229)
Q Consensus 63 ~~RR~FL~~~~ 73 (229)
.+||+||..++
T Consensus 2 ~~rr~~l~~~~ 12 (225)
T TIGR03149 2 CSRRNFLAGVG 12 (225)
T ss_pred ccHHHHHHHHH
Confidence 48999997643
No 84
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=31.27 E-value=36 Score=35.26 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHHh
Q 027005 63 MGKRQLMNLLLLGAV 77 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~ 77 (229)
|+||+||+....+++
T Consensus 2 ~~rr~flk~~~~~a~ 16 (830)
T TIGR01706 2 MSRRDFIKATAIASA 16 (830)
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999997664444
No 85
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=30.53 E-value=33 Score=33.37 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHhH
Q 027005 65 KRQLMNLLLLGAVS 78 (229)
Q Consensus 65 RR~FL~~~~~Ga~a 78 (229)
||+||+.+++++++
T Consensus 1 RR~Flk~~g~~~a~ 14 (524)
T cd02764 1 RRGFLKLMGASLAM 14 (524)
T ss_pred CchHHHHHHHHHHH
Confidence 89999986655444
No 86
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=29.89 E-value=54 Score=28.48 Aligned_cols=15 Identities=7% Similarity=-0.133 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHHh
Q 027005 63 MGKRQLMNLLLLGAV 77 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~ 77 (229)
.+||+||+.....++
T Consensus 2 ~~rr~~~~~~~~~~~ 16 (213)
T TIGR00397 2 PERRDAFADAARAVG 16 (213)
T ss_pred ccHHHHHHHHHHHHH
Confidence 479999977543333
No 87
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=29.74 E-value=22 Score=28.33 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=14.7
Q ss_pred CCEEEcCCCCeeEcC--CCcee
Q 027005 171 ENKFICPCHGSQYNN--QGRVV 190 (229)
Q Consensus 171 ~~~~~CPcHGs~FD~--sG~vv 190 (229)
.+.+.||+||=.-+- .|..+
T Consensus 85 rD~~kCPfHG~IIpRD~~G~Pi 106 (110)
T PF09740_consen 85 RDRKKCPFHGKIIPRDDEGNPI 106 (110)
T ss_pred cCcccCCCCCcccCCCCCCCCC
Confidence 367899999988775 45443
No 88
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=29.43 E-value=28 Score=20.89 Aligned_cols=17 Identities=53% Similarity=0.606 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCccccccc
Q 027005 1 MASSSSLSSATPSQLCSS 18 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (229)
||| +|-.+.+||.+-|+
T Consensus 1 mas-stpaspapsdils~ 17 (29)
T PF05570_consen 1 MAS-STPASPAPSDILSS 17 (29)
T ss_pred CCc-CCCCCCCcHHHHhc
Confidence 788 44333445555443
No 89
>COG4663 FcbT1 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.32 E-value=50 Score=31.17 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHH---HhHHHHHHhhhccccccCC
Q 027005 63 MGKRQLMNLLLLG---AVSLPTGFMLVPYATFFAP 94 (229)
Q Consensus 63 ~~RR~FL~~~~~G---a~al~~a~~~~P~~~~l~P 94 (229)
|+||+||+...+. ++++.++..+.|-+....|
T Consensus 1 m~Rrs~~~~~~~~~~~aa~~~~~~~a~~~~a~~~p 35 (363)
T COG4663 1 MDRRSFIRKAAIRGAGAAALATAGLATPAIAQENP 35 (363)
T ss_pred CchHHHHHHhHHHHHHHHHHHHhhhccchhhccCC
Confidence 6899999987542 2222222344455555444
No 90
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=29.08 E-value=40 Score=34.87 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=11.1
Q ss_pred cchHHHHHHHHHHHh
Q 027005 63 MGKRQLMNLLLLGAV 77 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~ 77 (229)
++||.||+..+.+++
T Consensus 1 ~~rr~~~k~~~~~~~ 15 (822)
T TIGR02164 1 MSRRDFLKGIASSSA 15 (822)
T ss_pred CCHHHHHHHHHHHHH
Confidence 589999998654444
No 91
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=27.85 E-value=84 Score=25.07 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=37.5
Q ss_pred EeccCCCCCccCCccCCC-------CEEEc-CCCCeeEcCCCceecC-CCCCCCceEEEEEEC--CeEEEE
Q 027005 154 INAVCTHLGCVVPWNSAE-------NKFIC-PCHGSQYNNQGRVVRG-PAPLSLALAHANVEN--GKVVFV 213 (229)
Q Consensus 154 ~~~vCtHlGc~l~~~~~~-------~~~~C-PcHGs~FD~sG~vv~G-Pap~~L~~~~v~v~~--g~I~V~ 213 (229)
+...|.++||.+....+. ..+.= +=+...|-.+|.+++. .-++.+|...+.+.| |+++..
T Consensus 33 ~~~~C~~~gc~v~~~~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 33 LEAACEVLGCPVPPPRDIDALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred HHHhHHhcCCCCCCccCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEE
Confidence 346699999998643221 12221 2356777778887764 555677777777754 666654
No 92
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=27.42 E-value=39 Score=27.76 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=23.6
Q ss_pred eccCCCCCccCCccCCCCEEEcCCCCeeEcC
Q 027005 155 NAVCTHLGCVVPWNSAENKFICPCHGSQYNN 185 (229)
Q Consensus 155 ~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~ 185 (229)
+..|+-=|+||=. .+|.++||-||-++..
T Consensus 28 ~~hCp~Cg~PLF~--KdG~v~CPvC~~~~~~ 56 (131)
T COG1645 28 AKHCPKCGTPLFR--KDGEVFCPVCGYREVV 56 (131)
T ss_pred HhhCcccCCccee--eCCeEECCCCCceEEE
Confidence 4679999999843 6789999999987764
No 93
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=26.99 E-value=23 Score=32.62 Aligned_cols=16 Identities=38% Similarity=0.866 Sum_probs=13.3
Q ss_pred CCCEEEcCCCCeeEcC
Q 027005 170 AENKFICPCHGSQYNN 185 (229)
Q Consensus 170 ~~~~~~CPcHGs~FD~ 185 (229)
+.-.|+|-|||+.|.+
T Consensus 249 ~~v~i~c~chg~~~~~ 264 (284)
T PF07897_consen 249 EEVRIVCVCHGSFLSP 264 (284)
T ss_pred CeEEEEEEecCCCCCH
Confidence 3457999999999985
No 94
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=25.95 E-value=42 Score=31.42 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHHh
Q 027005 63 MGKRQLMNLLLLGAV 77 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~ 77 (229)
.+||+||+.+++|++
T Consensus 21 ~~rr~~l~~~~~~~~ 35 (319)
T PRK05363 21 LNRRRFLKALGLGAA 35 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999998554443
No 95
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=24.74 E-value=1.3e+02 Score=22.34 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=35.1
Q ss_pred CEEEcCCCCeeEcC---CCceecCCCCCCCceEEEEEE-CCeEEEEeCc
Q 027005 172 NKFICPCHGSQYNN---QGRVVRGPAPLSLALAHANVE-NGKVVFVPWT 216 (229)
Q Consensus 172 ~~~~CPcHGs~FD~---sG~vv~GPap~~L~~~~v~v~-~g~I~V~~~~ 216 (229)
+.+.+..|+.+|.. +|..+-+--+-.+..-.+.+. ++.|.|.+|.
T Consensus 11 g~V~e~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~~ 59 (75)
T COG0361 11 GTVIEMLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELSP 59 (75)
T ss_pred EEEEEecCCCEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEecc
Confidence 57889999999995 899888766667777677775 5667777774
No 96
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=24.59 E-value=82 Score=26.43 Aligned_cols=15 Identities=20% Similarity=0.022 Sum_probs=11.0
Q ss_pred CCCcchHHHHHHHHH
Q 027005 60 VPDMGKRQLMNLLLL 74 (229)
Q Consensus 60 ~pd~~RR~FL~~~~~ 74 (229)
.+.++||+||...++
T Consensus 5 ~~~~~rr~~l~~~~~ 19 (154)
T PRK07474 5 PMALSRRQALALGGG 19 (154)
T ss_pred cCCcCHHHHHHHHHH
Confidence 446899999987443
No 97
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=44 Score=31.39 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.4
Q ss_pred CCCcchHHHHHHHHHHHhHHHHH
Q 027005 60 VPDMGKRQLMNLLLLGAVSLPTG 82 (229)
Q Consensus 60 ~pd~~RR~FL~~~~~Ga~al~~a 82 (229)
.|.+.||.||+..+++.+++.+.
T Consensus 3 ~~lidRR~fl~~ag~~~~a~~~p 25 (366)
T COG3490 3 QPLIDRRHFLKAAGIGFAAALAP 25 (366)
T ss_pred cchhhHHHHHHhhhhhhhhhhcc
Confidence 35889999999988777654433
No 98
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=20.25 E-value=45 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=18.9
Q ss_pred CEEEcCCCCeeEcCCCceecCC
Q 027005 172 NKFICPCHGSQYNNQGRVVRGP 193 (229)
Q Consensus 172 ~~~~CPcHGs~FD~sG~vv~GP 193 (229)
..++=|+|||-.|..|+-+..|
T Consensus 266 ~~lfEPvHGSAPDIAGkgiANP 287 (348)
T COG0473 266 PALFEPVHGSAPDIAGKGIANP 287 (348)
T ss_pred CceeecCCCCcccccCCCccCh
Confidence 4567799999999999988877
Done!