Query 027005
Match_columns 229
No_of_seqs 228 out of 1496
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_D Rieske iron-sulfur prot 100.0 1.7E-45 6E-50 309.5 3.7 178 52-229 2-179 (179)
2 2qjy_C Ubiquinol-cytochrome C 100.0 6.6E-30 2.3E-34 216.5 13.0 138 60-212 6-186 (187)
3 1rfs_A Rieske protein; iron-su 100.0 4.2E-30 1.4E-34 208.3 10.8 138 92-229 1-138 (139)
4 3cx5_E Cytochrome B-C1 complex 100.0 4.9E-29 1.7E-33 211.0 12.5 139 59-212 16-184 (185)
5 1pp9_E Ubiquinol-cytochrome C 99.9 1.1E-28 3.7E-33 210.8 6.6 136 62-212 29-195 (196)
6 3azc_A Cytochrome B6-F complex 99.9 1.2E-29 4.3E-34 204.7 0.0 128 102-229 5-133 (133)
7 4aay_B AROB; oxidoreductase, r 99.9 3.9E-24 1.3E-28 179.7 9.1 78 136-215 74-163 (175)
8 1rie_A Rieske iron-sulfur prot 99.9 7E-22 2.4E-26 157.7 7.0 65 146-212 62-128 (129)
9 2nwf_A Ubiquinol-cytochrome C 99.8 9.4E-22 3.2E-26 159.8 7.3 65 146-212 73-140 (141)
10 3dqy_A Toluene 1,2-dioxygenase 99.8 5.9E-21 2E-25 146.2 10.0 78 133-213 20-99 (106)
11 2qpz_A Naphthalene 1,2-dioxyge 99.8 4.4E-21 1.5E-25 146.0 8.8 78 133-213 22-101 (103)
12 2i7f_A Ferredoxin component of 99.8 1.1E-20 3.7E-25 145.2 10.2 79 133-214 22-103 (108)
13 1g8k_B Arsenite oxidase; molyb 99.8 1.4E-20 4.8E-25 150.9 10.4 78 136-215 31-121 (133)
14 3gce_A Ferredoxin component of 99.8 1.1E-20 3.8E-25 148.7 9.4 78 133-213 29-110 (121)
15 1fqt_A Rieske-type ferredoxin 99.8 1.4E-20 4.9E-25 145.6 9.0 77 134-213 25-104 (112)
16 1vm9_A Toluene-4-monooxygenase 99.8 3E-20 1E-24 143.4 9.4 77 135-214 23-101 (111)
17 2de6_D Ferredoxin component of 99.8 4.4E-20 1.5E-24 143.9 8.9 78 134-214 24-104 (115)
18 2jo6_A Nitrite reductase [NAD( 99.8 4.1E-19 1.4E-23 137.3 7.7 78 133-213 25-110 (113)
19 3c0d_A Putative nitrite reduct 99.8 4.3E-19 1.5E-23 139.0 6.1 78 134-214 25-109 (119)
20 1nyk_A Rieske iron-sulfur prot 99.8 2.1E-18 7E-23 143.5 8.9 64 151-214 80-146 (165)
21 4aiv_A Probable nitrite reduct 99.7 4.4E-18 1.5E-22 134.1 9.1 77 135-214 31-115 (119)
22 1jm1_A Rieske iron-sulfur prot 99.7 5.9E-18 2E-22 145.1 9.6 75 146-222 84-174 (204)
23 2jza_A Nitrite reductase [NAD( 99.7 5.4E-18 1.8E-22 134.9 7.6 78 134-214 23-108 (130)
24 3d89_A Rieske domain-containin 99.7 7E-17 2.4E-21 132.0 7.3 78 134-214 36-133 (157)
25 3gke_A DDMC; rieske cluster, n 99.6 5.7E-16 1.9E-20 141.3 7.8 81 133-215 26-114 (349)
26 2zyl_A Possible oxidoreductase 99.6 2.2E-15 7.5E-20 139.2 9.6 82 131-214 42-130 (386)
27 3gcf_A Terminal oxygenase comp 99.6 3.2E-15 1.1E-19 139.3 9.1 82 130-214 50-143 (394)
28 3gkq_A Terminal oxygenase comp 99.6 3.4E-15 1.2E-19 138.9 8.4 80 132-214 49-140 (389)
29 2de6_A Terminal oxygenase comp 99.5 7.8E-15 2.7E-19 135.3 8.5 81 131-214 45-137 (392)
30 3vca_A Ring-hydroxylating diox 99.5 1.5E-14 5.1E-19 135.2 9.8 82 132-215 62-153 (412)
31 2gbw_A Biphenyl 2,3-dioxygenas 99.5 1.8E-14 6.1E-19 135.3 10.2 80 133-214 57-150 (454)
32 3n0q_A Putative aromatic-ring 99.5 1.8E-14 6.2E-19 134.5 10.1 82 132-215 60-151 (409)
33 1z01_A 2-OXO-1,2-dihydroquinol 99.5 1.1E-14 3.9E-19 136.6 8.7 81 132-215 61-153 (446)
34 1uli_A Biphenyl dioxygenase la 99.5 1.4E-14 4.9E-19 136.4 7.3 80 133-214 75-167 (460)
35 2bmo_A Oxygenase-alpha NBDO; n 99.5 1.4E-14 4.7E-19 135.8 7.1 80 133-214 56-150 (447)
36 2b1x_A Naphthalene dioxygenase 99.5 1.2E-13 4E-18 130.4 9.1 80 133-214 65-159 (470)
37 3gzx_A Biphenyl dioxygenase su 99.4 4.1E-13 1.4E-17 127.1 8.8 81 133-215 77-177 (457)
38 1q90_R Cytochrome B6-F complex 99.1 4.2E-11 1.4E-15 80.9 3.3 45 56-100 2-46 (49)
39 2pq4_B Periplasmic nitrate red 93.3 0.046 1.6E-06 33.9 2.2 15 62-76 2-16 (35)
40 2w0y_A APH, alkaline phosphata 58.0 2.1 7.2E-05 40.5 0.0 17 58-74 7-23 (473)
41 2wpn_A Periplasmic [nifese] hy 53.9 2.7 9.3E-05 37.7 0.0 26 62-87 2-27 (317)
42 1h2a_S Hydrogenase; SO ligand, 53.6 2.8 9.4E-05 37.7 0.0 27 61-87 19-45 (317)
43 2vpz_A Thiosulfate reductase; 33.7 8.7 0.0003 37.5 0.0 13 63-75 1-13 (765)
44 1kqf_A FDH-N alpha, formate de 31.3 10 0.00035 38.6 0.0 15 62-76 2-16 (1015)
45 1tmo_A TMAO reductase, trimeth 29.9 11 0.00038 37.1 0.0 13 63-75 1-13 (829)
46 2ivf_A Ethylbenzene dehydrogen 29.8 11 0.00038 38.1 0.0 16 62-77 18-33 (976)
47 2pk7_A Uncharacterized protein 27.7 41 0.0014 23.3 2.7 34 157-190 10-44 (69)
48 1pft_A TFIIB, PFTFIIBN; N-term 23.6 36 0.0012 21.5 1.7 29 157-185 7-36 (50)
49 2hf1_A Tetraacyldisaccharide-1 22.1 62 0.0021 22.3 2.7 34 157-190 10-44 (68)
50 3h3g_B Parathyroid hormone-rel 21.9 30 0.001 19.5 0.8 15 62-76 6-20 (24)
51 2jny_A Uncharacterized BCR; st 21.7 65 0.0022 22.2 2.7 35 157-191 12-47 (67)
52 2jr6_A UPF0434 protein NMA0874 21.5 64 0.0022 22.3 2.7 35 157-191 10-45 (68)
53 3c75_L Methylamine dehydrogena 21.1 20 0.00069 29.8 0.0 28 63-91 22-49 (188)
54 2js4_A UPF0434 protein BB2007; 21.0 60 0.002 22.5 2.5 34 157-190 10-44 (70)
No 1
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=100.00 E-value=1.7e-45 Score=309.51 Aligned_cols=178 Identities=61% Similarity=1.135 Sum_probs=147.4
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccc
Q 027005 52 ATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLT 131 (229)
Q Consensus 52 ~~~~~~~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~ 131 (229)
+.+.+.++.|+|+||+||+++++++++++++++++|+++++.|+......++.+.+|..|+++..++|+....+++....
T Consensus 2 ~~~~~~~~~~~~~RR~Fl~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~ 81 (179)
T 1vf5_D 2 AQFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLV 81 (179)
T ss_dssp ----------CCCCCTTSCTTHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEE
T ss_pred CcccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEE
Confidence 34566678899999999999998999989999999999999999876665667888889988877777554445544444
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECCeEE
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 211 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g~I~ 211 (229)
....+++++++++.+|++.+||++++|||+||+|.++.+++.|.||||||+||.+|+++.||++++|++|++++++|.|+
T Consensus 82 ~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~~~v~v~~g~v~ 161 (179)
T 1vf5_D 82 QGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIV 161 (179)
T ss_dssp SCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCSSSSSEECTTTCCEECSSSCCCSSSCCSCCBCCCCCCSSSSCC
T ss_pred eccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccCCCCEEECCCCCCEECCCCcEecCCCCCCCCeEEEEEECCEEE
Confidence 34567889998888888655899999999999999988788999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCCCCCCCCC
Q 027005 212 FVPWTETDFRTGEAPWWA 229 (229)
Q Consensus 212 V~~~~~~~fr~~~~~~~~ 229 (229)
|.+|.|+|||+|++|||+
T Consensus 162 v~~~~~~~~r~~~~~~~~ 179 (179)
T 1vf5_D 162 LTPWTETDFRTGEKPWWV 179 (179)
T ss_dssp CCCCCCCCTTTCSSCSCC
T ss_pred EEeecCCCCcCCCCCCcC
Confidence 999999999999999996
No 2
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.96 E-value=6.6e-30 Score=216.54 Aligned_cols=138 Identities=26% Similarity=0.418 Sum_probs=104.0
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCCCCce
Q 027005 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPT 139 (229)
Q Consensus 60 ~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p~ 139 (229)
..+++||+||+++++++++++++++++|+++++.|+.+..+. +.++++. ..++........+.++|+
T Consensus 6 ~~~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~~~~~a~-~~v~v~l------------s~l~~G~~~~v~~~g~pv 72 (187)
T 2qjy_C 6 DHAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADVQAL-ASIFVDV------------SSVEPGVQLTVKFLGKPI 72 (187)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTTSCC-CCEEEEC------------TTCCTTEEEEEEETTEEE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccc-ccEEEEH------------HHCCCCCeEEEEECCEEE
Confidence 347899999999998888888889999999999998765443 2444431 011111122233455666
Q ss_pred EEEEe----------------------------------------cCCeEEEEEEeccCCCCCccCCc-cCC-CCEEEcC
Q 027005 140 YLVVE----------------------------------------KDKTLASYGINAVCTHLGCVVPW-NSA-ENKFICP 177 (229)
Q Consensus 140 ~lv~~----------------------------------------~dg~i~~~A~~~vCtHlGc~l~~-~~~-~~~~~CP 177 (229)
+|++. .+|++ +|++++|||+||+|.+ ..+ .+.|+||
T Consensus 73 ~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~--~a~~~~C~H~G~~l~~~~~g~~~~~~CP 150 (187)
T 2qjy_C 73 FIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEW--LVMWGVCTHLGCSPIGGVSGDFGGWFCP 150 (187)
T ss_dssp EEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCE--EEEECCCTTTSCCCEEEEETTTTEEEET
T ss_pred EEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeE--EEEeCccCCCCeECccCcCCCcCEEEeC
Confidence 66652 15666 8999999999999987 332 3799999
Q ss_pred CCCeeEcCCCceecCCCCCCCceEEEEEE-CCeEEE
Q 027005 178 CHGSQYNNQGRVVRGPAPLSLALAHANVE-NGKVVF 212 (229)
Q Consensus 178 cHGs~FD~sG~vv~GPap~~L~~~~v~v~-~g~I~V 212 (229)
||||+||++|+++.||++++|++|+++++ |+.|+|
T Consensus 151 ~Hg~~Fd~~G~~~~gPa~~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 151 CHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp TTTEEECTTSCEEESSCCSCCCBCSEEEEETTEEEE
T ss_pred CCCCEECCCCeEeCCCCCCCCceEEEEEEeCCEEEE
Confidence 99999999999999999999999999996 689987
No 3
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.96 E-value=4.2e-30 Score=208.26 Aligned_cols=138 Identities=84% Similarity=1.494 Sum_probs=106.4
Q ss_pred cCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCC
Q 027005 92 FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAE 171 (229)
Q Consensus 92 l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~ 171 (229)
++||..+.++++.+.++..|+.+.+.+|.....++.........+++++++++.+|++.+||++|+|||+||+|.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~~~ 80 (139)
T 1rfs_A 1 FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE 80 (139)
T ss_dssp ------------CBCBCTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEETTT
T ss_pred CcCCccCcccceEEeecCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCCCC
Confidence 46777777778889999999988776664333233322222345677888888888864479999999999999988777
Q ss_pred CEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECCeEEEEeCcCCCCCCCCCCCCC
Q 027005 172 NKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229 (229)
Q Consensus 172 ~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g~I~V~~~~~~~fr~~~~~~~~ 229 (229)
+.|.||||||+||.+|+++.+|++++|+.|++++++|.|+|.+|.+.+||++.+|||.
T Consensus 81 ~~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~~~v~v~~g~V~V~~~~~~~~~~~~~~~~~ 138 (139)
T 1rfs_A 81 NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 138 (139)
T ss_dssp TEEECTTTCCEEETTCCEEESSCCSCCCEEEEEEETTEEEEEECCSCCTTTSSCCSTT
T ss_pred CEEEcCCCCCEECCCCCCccCCCCCCCCEEEEEEECCEEEEEeCCccchhhcCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999995
No 4
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.96 E-value=4.9e-29 Score=211.01 Aligned_cols=139 Identities=22% Similarity=0.392 Sum_probs=101.9
Q ss_pred CCCCcchHHHHHHHHHHHhH---HHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCC
Q 027005 59 RVPDMGKRQLMNLLLLGAVS---LPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 135 (229)
Q Consensus 59 ~~pd~~RR~FL~~~~~Ga~a---l~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~ 135 (229)
+..+++||+||+.+++++++ +++++.++||+.++.|+.+..+ .+.++++ + ..++........+.
T Consensus 16 ~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a-~~~v~V~-----------~-s~l~~G~~~~v~~~ 82 (185)
T 3cx5_E 16 NNDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLA-MAKVEVN-----------L-AAIPLGKNVVVKWQ 82 (185)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGCC-CCCEEEE-----------G-GGCCTTCEEEEEET
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcchhc-cCcEEEE-----------H-HHCCCCCeEEEEEC
Confidence 34578999999998665543 3444567899999988754332 2233322 0 11222222334566
Q ss_pred CCceEEEEec--------------------------CCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCc
Q 027005 136 GDPTYLVVEK--------------------------DKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGR 188 (229)
Q Consensus 136 g~p~~lv~~~--------------------------dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~ 188 (229)
++|++|+|.. ++++ +|++++|||+||.+.++. +.+.|+||||||+||++|+
T Consensus 83 g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~--~a~~~iCtHlGc~p~~~~~~~~~~~CPcHGs~FD~~G~ 160 (185)
T 3cx5_E 83 GKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQW--LIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGR 160 (185)
T ss_dssp TEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTE--EEEECCCTTTSCCCEEEETTTTEEEETTTTEEECTTCC
T ss_pred CeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeE--EEEecccCCCCceeccCCCCCCEEEcCCCCCEECCCCC
Confidence 7888888763 4666 899999999999765543 4589999999999999999
Q ss_pred eecCCCCCCCceEEEEEECCeEEE
Q 027005 189 VVRGPAPLSLALAHANVENGKVVF 212 (229)
Q Consensus 189 vv~GPap~~L~~~~v~v~~g~I~V 212 (229)
++.||++++|++|+++++|+.|+|
T Consensus 161 v~~gPa~~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 161 IRKGPAPLNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EEESSCCSCCCCCCEEEETTEEEE
T ss_pred EecCCCCCCcceEEEEEECCEEEE
Confidence 999999999999999999999987
No 5
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.95 E-value=1.1e-28 Score=210.78 Aligned_cols=136 Identities=23% Similarity=0.442 Sum_probs=99.5
Q ss_pred CcchHHHHHHHHHHHhH---HHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCCCCc
Q 027005 62 DMGKRQLMNLLLLGAVS---LPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDP 138 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~a---l~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p 138 (229)
+++||+||+.+++++++ ++++++++|++.++.|+....+. +.++++ + ..++........+.++|
T Consensus 29 ~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~-~~v~v~-----------l-s~l~~G~~~~v~~~G~p 95 (196)
T 1pp9_E 29 SEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAM-SKIEIK-----------L-SDIPEGKNMAFKWRGKP 95 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHCC-CCEEEE-----------G-GGSCTTCEEEEEETTEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccc-cccEEE-----------H-HHCCCCCeEEEEECCEE
Confidence 67899999987655444 33345678999999886543222 233322 0 11221222334456778
Q ss_pred eEEEEec--------------------------CCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceec
Q 027005 139 TYLVVEK--------------------------DKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVR 191 (229)
Q Consensus 139 ~~lv~~~--------------------------dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~ 191 (229)
++|++.. ++++ +|++++|||+||+|.++. +.+.|+||||||+||++|+++.
T Consensus 96 V~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~--~a~~~~CtH~G~~l~~~~~~~~~~~CP~HGs~FD~~G~v~~ 173 (196)
T 1pp9_E 96 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEW--VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRK 173 (196)
T ss_dssp EEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTE--EEEECCCTTTSCCCEETCSTTSSEEETTTTEEECTTCCEEE
T ss_pred EEEEECCHHHHhhhhccccccccCcccccccccCCeE--EEEECccCCCCeeccccCCCCCEEEeCCCCCEECCCCCCcc
Confidence 8887752 5666 899999999999998875 3478999999999999999999
Q ss_pred CCCCCCCceEEEEE-ECCeEEE
Q 027005 192 GPAPLSLALAHANV-ENGKVVF 212 (229)
Q Consensus 192 GPap~~L~~~~v~v-~~g~I~V 212 (229)
||++++|++|++++ +|+.|+|
T Consensus 174 gPa~~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 174 GPAPLNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSCCSCCCCCCEEEETTTEEEE
T ss_pred CCCCCCCcceeEEEEECCEEEE
Confidence 99999999999999 7899987
No 6
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.91 E-value=1.2e-29 Score=204.74 Aligned_cols=128 Identities=67% Similarity=1.323 Sum_probs=107.8
Q ss_pred CCceeecCCCCceeeecccccCCCCCccccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCe
Q 027005 102 GGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGS 181 (229)
Q Consensus 102 ~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs 181 (229)
++.+++|+.|++|...+++....++.......+.+++.+++++.+|++.+||++++|||+||+|.++.+++.|.||||||
T Consensus 5 ~~~~~~~~~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~~~~~i~CP~Hg~ 84 (133)
T 3azc_A 5 GRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGS 84 (133)
Confidence 45778899999998877765544444433333455677777777887334899999999999999877778999999999
Q ss_pred eEcCCCceecCCCCCCCceEEEEE-ECCeEEEEeCcCCCCCCCCCCCCC
Q 027005 182 QYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWWA 229 (229)
Q Consensus 182 ~FD~sG~vv~GPap~~L~~~~v~v-~~g~I~V~~~~~~~fr~~~~~~~~ 229 (229)
+||.+|+++.+|+..+|+.|++++ ++|.|+|.+|.|.|||+|++|||.
T Consensus 85 ~Fd~tG~~~~~P~~~~L~~ypv~v~~~g~V~V~~~~e~d~~~~~~~~~~ 133 (133)
T 3azc_A 85 QYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWWT 133 (133)
Confidence 999999999999999999999999 999999999999999999999994
No 7
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.90 E-value=3.9e-24 Score=179.71 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=69.4
Q ss_pred CCceEEEEe---------cCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcCC--CceecCCCCCCCceEEEE
Q 027005 136 GDPTYLVVE---------KDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ--GRVVRGPAPLSLALAHAN 204 (229)
Q Consensus 136 g~p~~lv~~---------~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~s--G~vv~GPap~~L~~~~v~ 204 (229)
+.|++|+|. .+|++ +|++++|||+||+|.++.+++.|.||||||+||++ |+++.||+.++|+.|+++
T Consensus 74 ~~pv~v~R~g~~~~~~r~~~G~v--~A~~n~CpH~G~~L~~g~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L~~y~v~ 151 (175)
T 4aay_B 74 DAAGVLLKLGTRVEGGVGPDGDI--VGFSTICPHKGFPLSYSADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLR 151 (175)
T ss_dssp TSEEEEEECSSCCTTCBTTTTCE--EEEECBCTTTCCBCEEETTTTEEECTTTCCEEEGGGTTEEEECSCSSCCCBEEEE
T ss_pred CCEEEEEEcccccccccCCCCEE--EEEeCCCCCCCCCCccCCCCCEEEcCCCCCEECCCCCceEecCCCCCCcCEEEEE
Confidence 357888886 47877 89999999999999998778899999999999984 999999999999999999
Q ss_pred E-ECCeEEEEeC
Q 027005 205 V-ENGKVVFVPW 215 (229)
Q Consensus 205 v-~~g~I~V~~~ 215 (229)
+ +||.||+...
T Consensus 152 vd~dG~V~avg~ 163 (175)
T 4aay_B 152 VADNGDIFAEGV 163 (175)
T ss_dssp ECTTSEEEEEEE
T ss_pred EEcCCEEEEEEc
Confidence 9 4889998753
No 8
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.85 E-value=7e-22 Score=157.71 Aligned_cols=65 Identities=38% Similarity=0.781 Sum_probs=60.0
Q ss_pred CCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEE-ECCeEEE
Q 027005 146 DKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVF 212 (229)
Q Consensus 146 dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v-~~g~I~V 212 (229)
+|++ +|++++|||+||+|.++. +++.|+||||||+||++|+++.||++.+|+.|++++ +++.|+|
T Consensus 62 ~g~~--~a~~~~C~H~g~~l~~g~~~~~~i~CP~Hg~~fd~~G~~~~~P~~~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 62 KPEW--VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp STTE--EEEECCCTTTSCCCEETCTTTEEEEETTTTEEEETTCCEEESSCCSCCCCCCEEESSSSEEEE
T ss_pred CCeE--EEEECccCCCCeecccccCCCCEEEcCCCCCEEcCCCCEeeCCCCCCCCceeEEEEeCCEEEE
Confidence 7777 899999999999998875 357899999999999999999999999999999999 8999987
No 9
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.85 E-value=9.4e-22 Score=159.85 Aligned_cols=65 Identities=35% Similarity=0.719 Sum_probs=59.0
Q ss_pred CCeEEEEEEeccCCCCCccCCc-cC-CCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEE-ECCeEEE
Q 027005 146 DKTLASYGINAVCTHLGCVVPW-NS-AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVF 212 (229)
Q Consensus 146 dg~i~~~A~~~vCtHlGc~l~~-~~-~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v-~~g~I~V 212 (229)
+|++ +|++++|||+||+|.+ +. +.+.|+||||||+||++|+++.||++.+|++|++++ +|+.|+|
T Consensus 73 ~g~~--~a~~~~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 73 AGEW--LVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TSCE--EEEECCCTTTCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCSCCCBCSEEESSSSEEEE
T ss_pred CCcE--EEEeCcCCCCCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCCCCCceeEEEEECCEEEE
Confidence 5666 8999999999999988 44 348999999999999999999999999999999999 7899987
No 10
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.84 E-value=5.9e-21 Score=146.20 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKV 210 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I 210 (229)
...+.+++|++ .+|++ +|++|+|||+||+|.++. +++.|.||||||+||+ +|+++.+|++.+|+.|++++++|.|
T Consensus 20 ~~~g~~i~v~r-~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~~~v~~~~g~v 96 (106)
T 3dqy_A 20 EGGPEPVMVCN-VDGEF--FAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEV 96 (106)
T ss_dssp CCSSSCEEEEE-ETTEE--EEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCEECEEEETTEE
T ss_pred EECCEEEEEEE-ECCEE--EEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCCCCCCccEEEEEEECCEE
Confidence 45667888887 67887 899999999999998864 5689999999999997 9999999999999999999999999
Q ss_pred EEE
Q 027005 211 VFV 213 (229)
Q Consensus 211 ~V~ 213 (229)
+|.
T Consensus 97 ~v~ 99 (106)
T 3dqy_A 97 HVD 99 (106)
T ss_dssp EEC
T ss_pred EEE
Confidence 995
No 11
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.84 E-value=4.4e-21 Score=146.05 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=70.2
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKV 210 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I 210 (229)
...+++++|+| .+|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|.|
T Consensus 22 ~~~g~~i~v~r-~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P~~~~L~~~~v~~~~g~v 98 (103)
T 2qpz_A 22 TVEGKELALYE-VEGEI--YATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENLRV 98 (103)
T ss_dssp EETTEEEEEEE-ETTEE--EEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETTCCSCCCEECEEEETTEE
T ss_pred EECCEEEEEEE-ECCEE--EEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCCCCCCCCEEeEEEECCEE
Confidence 34567788888 78887 899999999999998865 6789999999999999 9999999999999999999999999
Q ss_pred EEE
Q 027005 211 VFV 213 (229)
Q Consensus 211 ~V~ 213 (229)
+|.
T Consensus 99 ~v~ 101 (103)
T 2qpz_A 99 MID 101 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 12
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.84 E-value=1.1e-20 Score=145.17 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=70.5
Q ss_pred cCCCCc-eEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCe
Q 027005 133 GLKGDP-TYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGK 209 (229)
Q Consensus 133 ~~~g~p-~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~ 209 (229)
...+.+ ++|+|. +|++ +|++|+|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|.
T Consensus 22 ~~~g~~~v~v~r~-~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~ 98 (108)
T 2i7f_A 22 YQEKMPALAVYNV-DGEV--FVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDGW 98 (108)
T ss_dssp CCTTSSCEEEEEE-TTEE--EEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCSTTCCSCCCEECEEEETTE
T ss_pred EECCeeEEEEEEE-CCEE--EEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCCCCCCCccEEeEEEECCE
Confidence 345678 888887 8887 899999999999998764 5689999999999998 999999999999999999999999
Q ss_pred EEEEe
Q 027005 210 VVFVP 214 (229)
Q Consensus 210 I~V~~ 214 (229)
|+|..
T Consensus 99 v~v~~ 103 (108)
T 2i7f_A 99 VCIDQ 103 (108)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99963
No 13
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.83 E-value=1.4e-20 Score=150.85 Aligned_cols=78 Identities=24% Similarity=0.550 Sum_probs=70.0
Q ss_pred CCceEEEEec---------CCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcC--CCceecCCCCCCCceEEEE
Q 027005 136 GDPTYLVVEK---------DKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN--QGRVVRGPAPLSLALAHAN 204 (229)
Q Consensus 136 g~p~~lv~~~---------dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~--sG~vv~GPap~~L~~~~v~ 204 (229)
+++++|+|.. +|++ +|++++|||+||+|.+..+++.|+||||||+||+ +|+++.||++++|+.|+++
T Consensus 31 g~~v~v~r~~~~~~~~~~~~g~~--~A~~n~CpH~g~~L~~~~~~~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~~~v~ 108 (133)
T 1g8k_B 31 SSPCVAVKLGAPVPGGVGPDDDI--VAYSVLCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLR 108 (133)
T ss_dssp TSEEEEEECSSCCTTCBTTTTCE--EEEECBCTTTCCBCEEETTTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEE
T ss_pred CceEEEEEccccccccccCCCEE--EEEeCcCCCCCCCCCcccCCCEEECCCCCCEECCCCCCCEEcCCCCCCCCEEEEE
Confidence 6788888864 7877 8999999999999998767789999999999999 8999999999999999999
Q ss_pred EE--CCeEEEEeC
Q 027005 205 VE--NGKVVFVPW 215 (229)
Q Consensus 205 v~--~g~I~V~~~ 215 (229)
++ ++.|||...
T Consensus 109 v~~~g~~V~v~g~ 121 (133)
T 1g8k_B 109 YDAASDALTAVGV 121 (133)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCCEEEEEec
Confidence 99 578999754
No 14
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.83 E-value=1.1e-20 Score=148.67 Aligned_cols=78 Identities=18% Similarity=0.411 Sum_probs=70.1
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCcc--C-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECC
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN--S-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENG 208 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~--~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g 208 (229)
...+.+++|+|. +|++ +|++++|||+||+|.++ . +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|
T Consensus 29 ~~~g~~v~v~r~-~g~~--~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~v~~g 105 (121)
T 3gce_A 29 DVDGDEVMVVRD-GDSV--YAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVVDGT 105 (121)
T ss_dssp EETTEEEEEEEE-TTEE--EEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEETTCCSCCCBCCEEEETT
T ss_pred EECCEEEEEEEE-CCEE--EEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeCCCCcCCcceEEEEEECC
Confidence 445678888885 7887 89999999999999987 3 5689999999999997 99999999999999999999999
Q ss_pred eEEEE
Q 027005 209 KVVFV 213 (229)
Q Consensus 209 ~I~V~ 213 (229)
.|||.
T Consensus 106 ~V~v~ 110 (121)
T 3gce_A 106 EILVA 110 (121)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99995
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.83 E-value=1.4e-20 Score=145.55 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCcc-C-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN-S-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKV 210 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~-~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I 210 (229)
..+.+++|+|. +|++ +|++|+|||+||+|.++ . +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|.|
T Consensus 25 ~~g~~i~v~r~-~g~~--~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~~~v~~~~g~v 101 (112)
T 1fqt_A 25 SGGTSVAIFNV-DGEL--FATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDV 101 (112)
T ss_dssp ETTEEEEEEEE-TTEE--EEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEESSCCSCCCBCCEEEETTEE
T ss_pred ECCEEEEEEEE-CCEE--EEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCCCCCCCccEEEEEEECCEE
Confidence 45677888887 7877 89999999999999876 3 5679999999999999 8999999999999999999999999
Q ss_pred EEE
Q 027005 211 VFV 213 (229)
Q Consensus 211 ~V~ 213 (229)
+|.
T Consensus 102 ~v~ 104 (112)
T 1fqt_A 102 LVD 104 (112)
T ss_dssp EEC
T ss_pred EEE
Confidence 995
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.82 E-value=3e-20 Score=143.40 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=69.4
Q ss_pred CCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeEEE
Q 027005 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKVVF 212 (229)
Q Consensus 135 ~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I~V 212 (229)
.+++++|+|..+|++ +|++|+|||+||+|.++. +++.|.||||||+||+ +|+++. |+..+|+.|++++++|.|+|
T Consensus 23 ~g~~v~v~r~~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~~~~v~~~~g~v~v 99 (111)
T 1vm9_A 23 DGTEVLIVNSEEHGV--KAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGDDIYV 99 (111)
T ss_dssp TCCEEEEEEETTTEE--EEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-SSSCBCCEECEEEETTEEEE
T ss_pred CCCEEEEEEeCCCeE--EEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-CCcCCcCEEEEEEECCEEEE
Confidence 567888998878987 899999999999998764 5689999999999999 699998 99999999999999999999
Q ss_pred Ee
Q 027005 213 VP 214 (229)
Q Consensus 213 ~~ 214 (229)
..
T Consensus 100 ~~ 101 (111)
T 1vm9_A 100 ST 101 (111)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 17
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.81 E-value=4.4e-20 Score=143.90 Aligned_cols=78 Identities=22% Similarity=0.401 Sum_probs=69.8
Q ss_pred CCCC-ceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEECCeE
Q 027005 134 LKGD-PTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVENGKV 210 (229)
Q Consensus 134 ~~g~-p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~~g~I 210 (229)
..+. +++|+|. +|++ ||++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+.|++++++|.|
T Consensus 24 ~~g~~~v~v~r~-~g~~--~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~V 100 (115)
T 2de6_D 24 RVGAAPLAVYRV-GDQF--YATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEV 100 (115)
T ss_dssp ETTEEEEEEEEE-TTEE--EEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCEEEEEESSSEE
T ss_pred ECCccEEEEEEE-CCEE--EEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeCCCCcCCCCEEEEEEECCEE
Confidence 4566 7888887 8887 899999999999998763 5689999999999998 9999999999999999999999999
Q ss_pred EEEe
Q 027005 211 VFVP 214 (229)
Q Consensus 211 ~V~~ 214 (229)
+|..
T Consensus 101 ~v~~ 104 (115)
T 2de6_D 101 YVAG 104 (115)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9964
No 18
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.77 E-value=4.1e-19 Score=137.34 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=67.1
Q ss_pred cCCCCceEEEEecCC-eEEEEEEeccCCCCCc-cCCccC-C---CC-EEEcCCCCeeEcC-CCceecCCCCCCCceEEEE
Q 027005 133 GLKGDPTYLVVEKDK-TLASYGINAVCTHLGC-VVPWNS-A---EN-KFICPCHGSQYNN-QGRVVRGPAPLSLALAHAN 204 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg-~i~~~A~~~vCtHlGc-~l~~~~-~---~~-~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~ 204 (229)
...+.+++|+|..+| ++ ||++|+|||+|| +|..+. + ++ .|.||||||+||+ +|+++.+|+ .+|+.|+++
T Consensus 25 ~~~g~~i~v~r~~~g~~~--~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~~~~v~ 101 (113)
T 2jo6_A 25 LLGDEQVAIFRPYHSDQV--FAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYEAR 101 (113)
T ss_dssp EETTEEEEEEECSSSSCC--EEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTTTT-TCCCEEEEE
T ss_pred EECCEEEEEEEECCCCEE--EEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCccCCCCCc-ccccEEeEE
Confidence 345677888887688 57 899999999999 798653 1 22 7999999999999 999999998 899999999
Q ss_pred EECCeEEEE
Q 027005 205 VENGKVVFV 213 (229)
Q Consensus 205 v~~g~I~V~ 213 (229)
+++|.|+|.
T Consensus 102 v~~g~V~v~ 110 (113)
T 2jo6_A 102 VKDGVVQLR 110 (113)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 999999995
No 19
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.76 E-value=4.3e-19 Score=139.02 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=67.5
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCc-cCCccC-C---CC-EEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEE
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGC-VVPWNS-A---EN-KFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVE 206 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc-~l~~~~-~---~~-~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~ 206 (229)
..+.+++|+|..+|++ ||++|+|||+|| +|..+. + +. .|.||||||+||+ +|+++.+|+ .+|+.|+++++
T Consensus 25 ~~g~~v~v~r~~~G~~--~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~~~~v~v~ 101 (119)
T 3c0d_A 25 IEGERVALFYIPDSGV--YAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEA-HCLKTWRVTVD 101 (119)
T ss_dssp ETTEEEEEEEETTTEE--EEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEES
T ss_pred ECCeEEEEEEecCCeE--EEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCCcCCCCCC-ceeeEEEEEEE
Confidence 4567888888878887 899999999999 787653 1 22 8999999999999 999999998 89999999999
Q ss_pred CCeEEEEe
Q 027005 207 NGKVVFVP 214 (229)
Q Consensus 207 ~g~I~V~~ 214 (229)
+|.|||..
T Consensus 102 ~g~V~v~~ 109 (119)
T 3c0d_A 102 DNQVCYLA 109 (119)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEe
Confidence 99999964
No 20
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.75 E-value=2.1e-18 Score=143.47 Aligned_cols=64 Identities=39% Similarity=0.784 Sum_probs=57.5
Q ss_pred EEEEeccCCCCCccCCc-cCCCCEEEcCCCCeeEcC-CCc-eecCCCCCCCceEEEEEECCeEEEEe
Q 027005 151 SYGINAVCTHLGCVVPW-NSAENKFICPCHGSQYNN-QGR-VVRGPAPLSLALAHANVENGKVVFVP 214 (229)
Q Consensus 151 ~~A~~~vCtHlGc~l~~-~~~~~~~~CPcHGs~FD~-sG~-vv~GPap~~L~~~~v~v~~g~I~V~~ 214 (229)
++|++++|||+||+|.. ..+++.|+||||||+||+ +|. ++.||++.+|+.|++++++|.|+|..
T Consensus 80 v~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~~~~v~v~~g~V~v~~ 146 (165)
T 1nyk_A 80 VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAAG 146 (165)
T ss_dssp EEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEEETTEEEECS
T ss_pred EEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCcEEEEEEECCEEEEEe
Confidence 38999999999999974 446689999999999999 585 99999999999999999999999953
No 21
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.74 E-value=4.4e-18 Score=134.11 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=66.5
Q ss_pred CCCceEEEEecCCeEEEEEEeccCCCCCccCCccC------CCCEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEEE-
Q 027005 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS------AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANVE- 206 (229)
Q Consensus 135 ~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~------~~~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v~- 206 (229)
.+++++|+|..+|++ ||++|.|||+|++|..+. ++..+.||+|||+||+ ||+++.+|+ .+|+.|+++|+
T Consensus 31 ~G~~v~l~r~~dG~v--~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~-~~l~~ypv~ve~ 107 (119)
T 4aiv_A 31 DGSQVALFRLDDGSV--HAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPR-VSVPVYPARVTP 107 (119)
T ss_dssp TSCEEEEEECTTSCE--EEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEECT
T ss_pred CCcEEEEEEcCCCeE--EEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCCCcCcCCCC-CccceEEEEEEe
Confidence 467899999888887 899999999999987542 1235999999999998 999999887 68999999998
Q ss_pred CCeEEEEe
Q 027005 207 NGKVVFVP 214 (229)
Q Consensus 207 ~g~I~V~~ 214 (229)
||.|||.+
T Consensus 108 dG~V~V~~ 115 (119)
T 4aiv_A 108 EGRIQVAR 115 (119)
T ss_dssp TSEEEEEE
T ss_pred CCEEEEec
Confidence 68999976
No 22
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.73 E-value=5.9e-18 Score=145.14 Aligned_cols=75 Identities=35% Similarity=0.724 Sum_probs=63.4
Q ss_pred CCeEEEEEEeccCCCCCccCCcc------------CCCCEEEcCCCCeeEcCC--CceecCCCCCCCceEEEEEE--CCe
Q 027005 146 DKTLASYGINAVCTHLGCVVPWN------------SAENKFICPCHGSQYNNQ--GRVVRGPAPLSLALAHANVE--NGK 209 (229)
Q Consensus 146 dg~i~~~A~~~vCtHlGc~l~~~------------~~~~~~~CPcHGs~FD~s--G~vv~GPap~~L~~~~v~v~--~g~ 209 (229)
+|++ +|++++|||+||+|.++ .+++.|+||||||+||++ |+++.||++++|+.|+++++ +|.
T Consensus 84 ~g~i--~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~~~L~~~~v~v~~~~g~ 161 (204)
T 1jm1_A 84 NGTI--FAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGD 161 (204)
T ss_dssp TTCE--EEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCE
T ss_pred CCEE--EEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCCCCCCeEeeEEEecCCE
Confidence 6776 89999999999999875 256899999999999994 69999999999999999998 899
Q ss_pred EEEEeCcCCCCCC
Q 027005 210 VVFVPWTETDFRT 222 (229)
Q Consensus 210 I~V~~~~~~~fr~ 222 (229)
|||......+|-.
T Consensus 162 v~v~g~~~p~~~~ 174 (204)
T 1jm1_A 162 IYAVGTNAPYFSA 174 (204)
T ss_dssp EEEEEESSCCCCS
T ss_pred EEEEeCCCCChhh
Confidence 9986544444443
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.73 E-value=5.4e-18 Score=134.94 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCCCceEEEEecCC-eEEEEEEeccCCCCCcc-CCccC----CC-CEEEcCCCCeeEcC-CCceecCCCCCCCceEEEEE
Q 027005 134 LKGDPTYLVVEKDK-TLASYGINAVCTHLGCV-VPWNS----AE-NKFICPCHGSQYNN-QGRVVRGPAPLSLALAHANV 205 (229)
Q Consensus 134 ~~g~p~~lv~~~dg-~i~~~A~~~vCtHlGc~-l~~~~----~~-~~~~CPcHGs~FD~-sG~vv~GPap~~L~~~~v~v 205 (229)
..+.+++|+|..+| ++ ||++|+|||+||. |..+. ++ ..|.||||||+||+ +|+++.+|+ .+|+.|++++
T Consensus 23 ~~g~~i~v~r~~~g~~v--~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~~~~v~v 99 (130)
T 2jza_A 23 VEQQQIAVFRPRNDEQV--YAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGA-YSVAAYDTQV 99 (130)
T ss_dssp ETTEEEEEEBCSSSSCC--EEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSSCCS-SCCBCCCEEE
T ss_pred ECCcEEEEEEECCCCEE--EEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCcCCCCCCc-CcceEEEEEE
Confidence 45667888887566 77 8999999999995 87653 22 38999999999999 999999998 8999999999
Q ss_pred ECCeEEEEe
Q 027005 206 ENGKVVFVP 214 (229)
Q Consensus 206 ~~g~I~V~~ 214 (229)
++|.|+|..
T Consensus 100 ~~g~V~V~~ 108 (130)
T 2jza_A 100 TNGNVQISI 108 (130)
T ss_dssp SSSEEEEEC
T ss_pred ECCEEEEEe
Confidence 999999964
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.67 E-value=7e-17 Score=132.03 Aligned_cols=78 Identities=15% Similarity=0.314 Sum_probs=64.2
Q ss_pred CCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-C---C-CEEEcCCCCeeEcC-CCceec---CC----CC-----
Q 027005 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-A---E-NKFICPCHGSQYNN-QGRVVR---GP----AP----- 195 (229)
Q Consensus 134 ~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~---~-~~~~CPcHGs~FD~-sG~vv~---GP----ap----- 195 (229)
..+.+++|+| .+|++ +|+.|+|||+|++|.++. + + +.|.||||||+||+ +|+++. +| +.
T Consensus 36 ~~g~~i~v~r-~~G~v--~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~tG~~~~~~i~P~~~~~~~~~~~ 112 (157)
T 3d89_A 36 VHDREVVIFY-HKGEY--HAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCS 112 (157)
T ss_dssp ETTEEEEEEE-ETTEE--EEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTTCEEEEEECCCC-----CEEEE
T ss_pred ECCEEEEEEE-ECCEE--EEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCCcCEEEeccCCCcccccccccc
Confidence 4567788888 68887 899999999999998764 2 2 58999999999999 999885 23 21
Q ss_pred --CCCceEEEEEECCeEEEEe
Q 027005 196 --LSLALAHANVENGKVVFVP 214 (229)
Q Consensus 196 --~~L~~~~v~v~~g~I~V~~ 214 (229)
.+|+.|++++++|.|||..
T Consensus 113 ~~~~L~~~~v~v~~G~V~V~~ 133 (157)
T 3d89_A 113 KGVKQRIHTVKVDNGNIYVTL 133 (157)
T ss_dssp EEECSCEEEEEEETTEEEEEC
T ss_pred ccCcceEEEEEEECCEEEEEe
Confidence 4799999999999999964
No 25
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.61 E-value=5.7e-16 Score=141.28 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=70.9
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCC-------CCCCceEEEE
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA-------PLSLALAHAN 204 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPa-------p~~L~~~~v~ 204 (229)
...+.+++|+|..+|++ +|+.|+|||+|++|..+. +++.|.||||||+||.+|+++.+|. ...|+.|+++
T Consensus 26 ~~~g~~vvv~R~~~G~v--~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~l~~~~v~ 103 (349)
T 3gke_A 26 TILDTPLALYRQPDGVV--AALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVV 103 (349)
T ss_dssp EETTEEEEEEECTTSCE--EEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCCEEECCSTTCCCCGGGCCCBCCEE
T ss_pred EECCEEEEEEEcCCCcE--EEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCCccccCccccccccccccceeeEE
Confidence 45678899999888987 899999999999998764 5689999999999999999999983 3579999999
Q ss_pred EECCeEEEEeC
Q 027005 205 VENGKVVFVPW 215 (229)
Q Consensus 205 v~~g~I~V~~~ 215 (229)
+++|.|||...
T Consensus 104 ~~~G~V~v~~~ 114 (349)
T 3gke_A 104 ERDALIWIWPG 114 (349)
T ss_dssp EETTEEEECCS
T ss_pred EECCEEEEeeC
Confidence 99999999543
No 26
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.59 E-value=2.2e-15 Score=139.20 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=71.5
Q ss_pred cccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-CCCEEEcCCCCeeEcCCCceecCCCC------CCCceEEE
Q 027005 131 TEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP------LSLALAHA 203 (229)
Q Consensus 131 ~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~~~~~~CPcHGs~FD~sG~vv~GPap------~~L~~~~v 203 (229)
.....+.+++|+|..+|++ +|+.|+|+|+|++|..+. +++.|.||||||+||.+|+++.+|.. ..|+.|++
T Consensus 42 ~~~~~g~~vvl~R~~~G~v--~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~l~~~~v 119 (386)
T 2zyl_A 42 GVEAFGTKLVVFADSHGDL--KVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTT 119 (386)
T ss_dssp EEEETTEEEEEEECTTSCE--EEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSBEEECTTCSSCCTTCBCCEECE
T ss_pred EEEECCeEEEEEECCCCCE--EEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCCccccCcccccCcccCcceEeE
Confidence 3445678899999889987 899999999999998764 46799999999999999999999863 47899999
Q ss_pred EEECCeEEEEe
Q 027005 204 NVENGKVVFVP 214 (229)
Q Consensus 204 ~v~~g~I~V~~ 214 (229)
++.+|.|||..
T Consensus 120 ~~~~G~v~v~~ 130 (386)
T 2zyl_A 120 DVRSGLLFVWH 130 (386)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 99999999964
No 27
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.58 E-value=3.2e-15 Score=139.33 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=70.3
Q ss_pred ccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcC-CCceecCCC--------CCC
Q 027005 130 LTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA--------PLS 197 (229)
Q Consensus 130 ~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~-sG~vv~GPa--------p~~ 197 (229)
......+++++|+| .+|++ +|+.|+|||+||+|..+. .++.|.||||||+||+ +|+++.+|+ ..+
T Consensus 50 ~~v~i~G~~VvV~R-~dG~v--~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~~p~~~~~~~~~ 126 (394)
T 3gcf_A 50 VAVTMLGEKVLLTR-AKGEV--KAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIG 126 (394)
T ss_dssp EEEEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTTCBEEEETTSTTCTTTTSCB
T ss_pred EEEEECCEEEEEEE-eCCeE--EEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCCCceeccCCCcccccccccC
Confidence 33445678898988 78887 899999999999999864 5689999999999999 999998764 357
Q ss_pred CceEEEEEECCeEEEEe
Q 027005 198 LALAHANVENGKVVFVP 214 (229)
Q Consensus 198 L~~~~v~v~~g~I~V~~ 214 (229)
|+.|++++.+|.|||..
T Consensus 127 L~~ypV~e~~G~VfV~l 143 (394)
T 3gcf_A 127 IKVYPVQVAQGVVFVFI 143 (394)
T ss_dssp CCEECEEEETTEEEEEE
T ss_pred ceEEEEEEECCcEEEec
Confidence 99999999999999965
No 28
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.57 E-value=3.4e-15 Score=138.93 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=69.4
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcC-CCceecCCC--------CCCCc
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA--------PLSLA 199 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~-sG~vv~GPa--------p~~L~ 199 (229)
....+++++|+| .+|++ +|+.|+|+|+||+|..+. .++.|.||||||+||+ +|+++..|+ ..+|+
T Consensus 49 v~i~G~~VvV~R-~dG~v--~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~~P~~~~~~~~~L~ 125 (389)
T 3gkq_A 49 VQLLGEKVLLNR-VDGVV--HAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALK 125 (389)
T ss_dssp EEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCC
T ss_pred EEECCEEEEEEE-eCCeE--EEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCCCCeecccCCcccccccccCCc
Confidence 345678888888 78887 899999999999999874 5689999999999999 999998764 35799
Q ss_pred eEEEEEECCeEEEEe
Q 027005 200 LAHANVENGKVVFVP 214 (229)
Q Consensus 200 ~~~v~v~~g~I~V~~ 214 (229)
.|++++.+|.|||..
T Consensus 126 ~ypV~e~~G~VfV~l 140 (389)
T 3gkq_A 126 TYPVREEKGLVFLFV 140 (389)
T ss_dssp BCCEEEETTEEEEEE
T ss_pred EEEEEEECCeEEEec
Confidence 999999999999975
No 29
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.55 E-value=7.8e-15 Score=135.30 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=69.0
Q ss_pred cccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcC-CCceecCCC--------CCCC
Q 027005 131 TEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA--------PLSL 198 (229)
Q Consensus 131 ~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~-sG~vv~GPa--------p~~L 198 (229)
...+.+++++|+| .+|++ +|+.|+|+|+|++|.++. +++.|.||||||+||+ +|+++.+|. ...|
T Consensus 45 ~~~~~g~~vvl~R-~~G~v--~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G~~~~~p~~p~~~~~~~~~l 121 (392)
T 2de6_A 45 TLKLLGENLLVNR-IDGKL--YCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKL 121 (392)
T ss_dssp EEEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBC
T ss_pred EEEECCEEEEEEE-eCCEE--EEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCCccccccCCccccccccCCC
Confidence 3445678899998 58887 899999999999998864 3589999999999998 999998753 2479
Q ss_pred ceEEEEEECCeEEEEe
Q 027005 199 ALAHANVENGKVVFVP 214 (229)
Q Consensus 199 ~~~~v~v~~g~I~V~~ 214 (229)
+.|++++.+|.|||..
T Consensus 122 ~~~~v~~~~G~v~v~~ 137 (392)
T 2de6_A 122 KTYPVQEAKGCVFIYL 137 (392)
T ss_dssp CBCCEEEETTEEEEEE
T ss_pred ceEeEEEECCEEEEEe
Confidence 9999999999999965
No 30
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.54 E-value=1.5e-14 Score=135.24 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=70.4
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCc-cC-CCCEEEcCCCCeeEcCCCceecCCCC--------CCCceE
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPW-NS-AENKFICPCHGSQYNNQGRVVRGPAP--------LSLALA 201 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~-~~-~~~~~~CPcHGs~FD~sG~vv~GPap--------~~L~~~ 201 (229)
....+.+++|+|+.+|++ +|+.|+|+|+|++|.. +. .++.|.||+|||+||++|+++.+|+. .+|+.|
T Consensus 62 ~~i~g~~vvv~R~~dG~v--~A~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~ 139 (412)
T 3vca_A 62 LRVGAYEVVIVRSRDGEV--RAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPV 139 (412)
T ss_dssp EEETTEEEEEEECTTSCE--EEEESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEE
T ss_pred EEECCEEEEEEEcCCCCE--EEecccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEE
Confidence 345678899999889987 8999999999999973 32 45789999999999999999999853 479999
Q ss_pred EEEEECCeEEEEeC
Q 027005 202 HANVENGKVVFVPW 215 (229)
Q Consensus 202 ~v~v~~g~I~V~~~ 215 (229)
++++.+|.|||...
T Consensus 140 ~v~~~~G~V~v~~~ 153 (412)
T 3vca_A 140 NLRNLDGLIYICLS 153 (412)
T ss_dssp EEEEETTEEEEECS
T ss_pred EEEEECCEEEEEec
Confidence 99999999999643
No 31
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.53 E-value=1.8e-14 Score=135.33 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=68.9
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCCC------------CC
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPL------------SL 198 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap~------------~L 198 (229)
.+.+++++|+|+.+|++ +|+.|+|+|+|++|.++. .++.|.||||||+||++|+++.+|+.. .|
T Consensus 57 ~~~~~~vvv~R~~~G~v--~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l 134 (454)
T 2gbw_A 57 YMAEDKVILSHQSDGTF--RAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAA 134 (454)
T ss_dssp EETTEEEEEEECTTSCE--EEEESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCC
T ss_pred EECCeEEEEEEcCCCCE--EEEeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCC
Confidence 34567888999889987 899999999999998764 357899999999999999999998642 48
Q ss_pred ceEEEEEECCeEEEEe
Q 027005 199 ALAHANVENGKVVFVP 214 (229)
Q Consensus 199 ~~~~v~v~~g~I~V~~ 214 (229)
+.|++++.+|.|||..
T Consensus 135 ~~~~v~~~~G~v~v~~ 150 (454)
T 2gbw_A 135 KSVRVETYKGFIFGCH 150 (454)
T ss_dssp CEEEEEEETTEEEEEC
T ss_pred eeEEEEEECCEEEEEe
Confidence 8899999999999964
No 32
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.53 E-value=1.8e-14 Score=134.55 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=70.7
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCc-cC-CCCEEEcCCCCeeEcCCCceecCCCC--------CCCceE
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPW-NS-AENKFICPCHGSQYNNQGRVVRGPAP--------LSLALA 201 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~-~~-~~~~~~CPcHGs~FD~sG~vv~GPap--------~~L~~~ 201 (229)
....+.+++|+|+.+|++ +|+.|+|+|+|++|.. +. .++.|.||+|||+||++|+++.+|+. ..|+.|
T Consensus 60 ~~i~g~~vvv~R~~dG~v--~A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~ 137 (409)
T 3n0q_A 60 HQVGNYNVIIVRGADNVI--RAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTV 137 (409)
T ss_dssp EEETTEEEEEEECTTSCE--EEEESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEE
T ss_pred EEECCEEEEEEEcCCCCE--EeecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceE
Confidence 345678899999889987 8999999999999986 32 45789999999999999999998852 589999
Q ss_pred EEEEECCeEEEEeC
Q 027005 202 HANVENGKVVFVPW 215 (229)
Q Consensus 202 ~v~v~~g~I~V~~~ 215 (229)
++++.+|.|||...
T Consensus 138 ~v~~~~G~Vfv~~~ 151 (409)
T 3n0q_A 138 HCRELAGLIYICLA 151 (409)
T ss_dssp EEEEETTEEEEECS
T ss_pred EEEEECCEEEEEeC
Confidence 99999999999643
No 33
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.53 E-value=1.1e-14 Score=136.58 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=69.0
Q ss_pred ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC---CCCEEEcCCCCeeEcC-CCceecCCC--------CCCCc
Q 027005 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA--------PLSLA 199 (229)
Q Consensus 132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~---~~~~~~CPcHGs~FD~-sG~vv~GPa--------p~~L~ 199 (229)
..+.+.+++|+| .+|++ +|+.|+|+|+|++|.++. +++.|.||||||+||+ +|+++.+|. ...|.
T Consensus 61 ~~~~g~~vvl~r-~~G~v--~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~ 137 (446)
T 1z01_A 61 IQICGVPIVLRR-VNGKV--FALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVT 137 (446)
T ss_dssp EEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCC
T ss_pred EEECCEEEEEEE-eCCEE--EEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCc
Confidence 345677888888 78887 899999999999998874 4689999999999998 999998764 24799
Q ss_pred eEEEEEECCeEEEEeC
Q 027005 200 LAHANVENGKVVFVPW 215 (229)
Q Consensus 200 ~~~v~v~~g~I~V~~~ 215 (229)
.|++++.+|.|||...
T Consensus 138 ~~~v~~~~G~V~v~~~ 153 (446)
T 1z01_A 138 TYPVHEVNGMIFVFVR 153 (446)
T ss_dssp EECEEEETTEEEEEEC
T ss_pred EEEEEEECCEEEEEeC
Confidence 9999999999999643
No 34
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.51 E-value=1.4e-14 Score=136.42 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=68.6
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC-----------CCCc
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP-----------LSLA 199 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap-----------~~L~ 199 (229)
.+.+++++|+|..+|++ +|+.|+|+|+|++|.++. ..+.|.||||||+||++|+++.+|+. ..|+
T Consensus 75 ~i~~~~vvv~R~~~G~v--~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~ 152 (460)
T 1uli_A 75 YMGEDPVMVVRQKNGEI--RVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPL 152 (460)
T ss_dssp EETTEEEEEEECTTSCE--EEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCC
T ss_pred EECCeEEEEEEcCCCCE--EEEeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCc
Confidence 34567888999888987 899999999999998764 24689999999999999999999863 2488
Q ss_pred eEEEEEECCeEEEEe
Q 027005 200 LAHANVENGKVVFVP 214 (229)
Q Consensus 200 ~~~v~v~~g~I~V~~ 214 (229)
.|++++.+|.|||..
T Consensus 153 ~~~v~~~~G~V~v~~ 167 (460)
T 1uli_A 153 QARVETYKGLIFANW 167 (460)
T ss_dssp EEEEEEETTEEEEEC
T ss_pred eeeEEEECCEEEEEe
Confidence 899999999999963
No 35
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.51 E-value=1.4e-14 Score=135.76 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=69.1
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC------------CCC
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP------------LSL 198 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap------------~~L 198 (229)
.+.+++++|+|+.+|++ +|+.|+|+|+|++|..+. .++.|.||+|||+||++|+++..|.. ..|
T Consensus 56 ~~~~~~vvv~R~~~G~v--~a~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l 133 (447)
T 2bmo_A 56 KMGVDEVIVSRQNDGSV--RAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGL 133 (447)
T ss_dssp EETTEEEEEEECTTSCE--EEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCC
T ss_pred EECCeeEEEEECCCCCE--EEEeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCC
Confidence 44567889999889987 899999999999998764 35789999999999999999998862 378
Q ss_pred ceEE-EEEECCeEEEEe
Q 027005 199 ALAH-ANVENGKVVFVP 214 (229)
Q Consensus 199 ~~~~-v~v~~g~I~V~~ 214 (229)
+.|+ +++.+|.|||..
T Consensus 134 ~~~~~v~~~~G~v~v~~ 150 (447)
T 2bmo_A 134 KEVPRIESFHGFIYGCF 150 (447)
T ss_dssp CBCSEEEEETTEEEEES
T ss_pred cccceEEEECCEEEEEc
Confidence 8997 999999999964
No 36
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.46 E-value=1.2e-13 Score=130.37 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=65.1
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC-C-CCEEEcCCCCeeEcCCCceecCCCCC------------CC
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-A-ENKFICPCHGSQYNNQGRVVRGPAPL------------SL 198 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~-~-~~~~~CPcHGs~FD~sG~vv~GPap~------------~L 198 (229)
...+++++|+|+.+|++ +|+.|+|+|+|++|.++. + .+.|.||||||+||++|+++.+|... .|
T Consensus 65 ~~~g~~vvv~R~~~G~v--~a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l 142 (470)
T 2b1x_A 65 YISEDQFIVCRDEGGEI--RGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNL 142 (470)
T ss_dssp EETTEEEEEEECTTSCE--EEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSC
T ss_pred EECCeEEEEEEcCCCCE--EEEecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCC
Confidence 45677899999889987 899999999999998764 2 36899999999999999999998742 24
Q ss_pred ceE-EEEEECCeEEEEe
Q 027005 199 ALA-HANVENGKVVFVP 214 (229)
Q Consensus 199 ~~~-~v~v~~g~I~V~~ 214 (229)
..+ .+++.+|.|||..
T Consensus 143 ~~~p~ve~~~G~Vfv~~ 159 (470)
T 2b1x_A 143 RPMPNLASYKGLIFGSL 159 (470)
T ss_dssp CBCSEEEEETTEEEEES
T ss_pred cccceEEEECCEEEEEe
Confidence 445 4555599999964
No 37
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.40 E-value=4.1e-13 Score=127.08 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=68.7
Q ss_pred cCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccC--CCCEEEcCCCCeeEcCCCceecCCCC---------------
Q 027005 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP--------------- 195 (229)
Q Consensus 133 ~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~--~~~~~~CPcHGs~FD~sG~vv~GPap--------------- 195 (229)
...+++++|+|+.+|++ +|+.|+|+|+|++|..+. .++.|.||+|||+||.+|+++..|..
T Consensus 77 ~i~~~~vvv~R~~dG~v--~A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~ 154 (457)
T 3gzx_A 77 YMGEDPVIMVRQKDQSI--KVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFD 154 (457)
T ss_dssp EETTEEEEEEECTTSCE--EEEESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCC
T ss_pred EECCEEEEEEECCCCeE--EEEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccC
Confidence 45667899999889987 899999999999998764 45789999999999999999988852
Q ss_pred ---CCCceEEEEEECCeEEEEeC
Q 027005 196 ---LSLALAHANVENGKVVFVPW 215 (229)
Q Consensus 196 ---~~L~~~~v~v~~g~I~V~~~ 215 (229)
..|..|++.+.+|.|||...
T Consensus 155 ~~~~~L~~~~v~e~~G~Vfv~~~ 177 (457)
T 3gzx_A 155 KADWGPLQARVETYKGLVFANWD 177 (457)
T ss_dssp GGGCCCCEEEEEEETTEEEEESC
T ss_pred hhhCCCceEeEEEECCEEEEecC
Confidence 14678899999999999643
No 38
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=99.09 E-value=4.2e-11 Score=80.90 Aligned_cols=45 Identities=42% Similarity=0.836 Sum_probs=37.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCC
Q 027005 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSA 100 (229)
Q Consensus 56 ~~~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~ 100 (229)
+++++|||+||+||+++++|++++.++++++|++.|++||.+...
T Consensus 2 ~~~~~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg~ 46 (49)
T 1q90_R 2 ASSEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGG 46 (49)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCCC
Confidence 356899999999999999999999999999999999999976543
No 39
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=93.27 E-value=0.046 Score=33.94 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHHHH
Q 027005 62 DMGKRQLMNLLLLGA 76 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga 76 (229)
.++||+||+....++
T Consensus 2 ~lsRR~FLK~~aaa~ 16 (35)
T 2pq4_B 2 KLSRRSFMKANAVAA 16 (35)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 478999999755433
No 40
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=57.96 E-value=2.1 Score=40.54 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHHH
Q 027005 58 DRVPDMGKRQLMNLLLL 74 (229)
Q Consensus 58 ~~~pd~~RR~FL~~~~~ 74 (229)
.+.|+|+||+||+...+
T Consensus 7 ~~~~~~~rr~~~~~~~~ 23 (473)
T 2w0y_A 7 TESPSVDRRTFLAGLSG 23 (473)
T ss_dssp -----------------
T ss_pred CCCCCchHHHHhcccch
Confidence 36788999999998663
No 41
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=53.86 E-value=2.7 Score=37.75 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHhHHHHHHhhhc
Q 027005 62 DMGKRQLMNLLLLGAVSLPTGFMLVP 87 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~al~~a~~~~P 87 (229)
.++||+||++....++++++.....|
T Consensus 2 ~~srr~f~k~~~~~~a~~~l~~~~~~ 27 (317)
T 2wpn_A 2 SLTRRDFVKLCTGTVAGFGISQMFHP 27 (317)
T ss_dssp --------------------------
T ss_pred CCCHHHHHHHHHHHHHHhccchhhHH
Confidence 47999999998655554443333333
No 42
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=53.63 E-value=2.8 Score=37.73 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhHHHHHHhhhc
Q 027005 61 PDMGKRQLMNLLLLGAVSLPTGFMLVP 87 (229)
Q Consensus 61 pd~~RR~FL~~~~~Ga~al~~a~~~~P 87 (229)
-.++||+||++....++++++.....|
T Consensus 19 ~~~sRr~F~k~~~~~~a~~~l~~~~~~ 45 (317)
T 1h2a_S 19 RGVSRRDFLKFCTAIAVTMGMGPAFAP 45 (317)
T ss_dssp ---------------------------
T ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHH
Confidence 368999999998665554444433334
No 43
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=33.72 E-value=8.7 Score=37.52 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHH
Q 027005 63 MGKRQLMNLLLLG 75 (229)
Q Consensus 63 ~~RR~FL~~~~~G 75 (229)
++||+||+.++++
T Consensus 1 ~sRR~FLK~~~a~ 13 (765)
T 2vpz_A 1 MQRREFLKLSALG 13 (765)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 5899999986543
No 44
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=31.26 E-value=10 Score=38.60 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHH
Q 027005 62 DMGKRQLMNLLLLGA 76 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga 76 (229)
.++||+||+.+++++
T Consensus 2 ~~sRR~FLK~~~a~~ 16 (1015)
T 1kqf_A 2 DVSRRQFFKICAGGM 16 (1015)
T ss_dssp ---------------
T ss_pred CCCHHHHHHHHHHHH
Confidence 478999999765433
No 45
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=29.89 E-value=11 Score=37.10 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHH
Q 027005 63 MGKRQLMNLLLLG 75 (229)
Q Consensus 63 ~~RR~FL~~~~~G 75 (229)
|+||+||+.+.++
T Consensus 1 ~~RR~Flk~~~~~ 13 (829)
T 1tmo_A 1 MNRRDFLKGIASS 13 (829)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 5899999975433
No 46
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=29.76 E-value=11 Score=38.09 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHh
Q 027005 62 DMGKRQLMNLLLLGAV 77 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga~ 77 (229)
.++||+||+.++++++
T Consensus 18 ~~sRR~Flk~~~~~~a 33 (976)
T 2ivf_A 18 DQHRRDFLKRSGAAVL 33 (976)
T ss_dssp ----------------
T ss_pred CccHHHHHHHHHHHHH
Confidence 4689999998654443
No 47
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.68 E-value=41 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.1
Q ss_pred cCCCCCccCCccCCCCEEEcCCCCeeEcC-CCcee
Q 027005 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVV 190 (229)
Q Consensus 157 vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-sG~vv 190 (229)
+||-=+.+|.+..+++.++|+--|-.|-. +|-.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPv 44 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAYPIRDGIPV 44 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEEEEETTEEC
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEecCcCCeee
Confidence 57777777777667789999999999998 88654
No 48
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.65 E-value=36 Score=21.46 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=22.2
Q ss_pred cCCCCCc-cCCccCCCCEEEcCCCCeeEcC
Q 027005 157 VCTHLGC-VVPWNSAENKFICPCHGSQYNN 185 (229)
Q Consensus 157 vCtHlGc-~l~~~~~~~~~~CPcHGs~FD~ 185 (229)
.||.=|. .|.+..+.+.+.|+--|..|..
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 5887776 6666667788999888888864
No 49
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.12 E-value=62 Score=22.32 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=28.0
Q ss_pred cCCCCCccCCccCCCCEEEcCCCCeeEcC-CCcee
Q 027005 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVV 190 (229)
Q Consensus 157 vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-sG~vv 190 (229)
+||.=+.+|.+..+.+.++|+-=|-.|-. +|-.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPM 44 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEEEETTEEC
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCeee
Confidence 58887888877777889999988999998 88654
No 50
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=21.88 E-value=30 Score=19.51 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHHHH
Q 027005 62 DMGKRQLMNLLLLGA 76 (229)
Q Consensus 62 d~~RR~FL~~~~~Ga 76 (229)
|++||-||.-++.+.
T Consensus 6 ~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 6 DLRRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 578999999877553
No 51
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.70 E-value=65 Score=22.23 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.1
Q ss_pred cCCCCCccCCccCCCCEEEcCCCCeeEcC-CCceec
Q 027005 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVVR 191 (229)
Q Consensus 157 vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-sG~vv~ 191 (229)
+||.=..+|.+..+.+.++|+--|-.|-. +|-.+-
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvm 47 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVL 47 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECC
T ss_pred CCCCCCCcCeEeCCCCEEEcCCCCccccCCCCEeee
Confidence 58887778877777889999988899987 886553
No 52
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.53 E-value=64 Score=22.25 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=27.9
Q ss_pred cCCCCCccCCccCCCCEEEcCCCCeeEcC-CCceec
Q 027005 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVVR 191 (229)
Q Consensus 157 vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-sG~vv~ 191 (229)
+||.=+.+|.+..+.+.++|+-=|-.|-. +|-.+-
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYM 45 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEEEEETTEECC
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeee
Confidence 57777778877777789999988999998 886553
No 53
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=21.12 E-value=20 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhccccc
Q 027005 63 MGKRQLMNLLLLGAVSLPTGFMLVPYATF 91 (229)
Q Consensus 63 ~~RR~FL~~~~~Ga~al~~a~~~~P~~~~ 91 (229)
.+||.||.+++...++. ++.-++|+.+.
T Consensus 22 tsRRs~l~~lG~~l~g~-a~~PlLPV~R~ 49 (188)
T 3c75_L 22 TSRRGAIGRLGTVLAGA-ALVPLLPVDRR 49 (188)
T ss_dssp -----------------------------
T ss_pred cchHHHHHHHHHHHhhh-hhccccccccc
Confidence 58999999976444432 23444566544
No 54
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.95 E-value=60 Score=22.55 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=27.1
Q ss_pred cCCCCCccCCccCCCCEEEcCCCCeeEcC-CCcee
Q 027005 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVV 190 (229)
Q Consensus 157 vCtHlGc~l~~~~~~~~~~CPcHGs~FD~-sG~vv 190 (229)
+||.=+.+|.+..+++.++|+--|-.|-. +|-.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEEEEEETTEEC
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCceecCCCCeee
Confidence 58877777777777789999988999988 88654
Done!