BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027007
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS------GLP-SEGALELVYGDVTD 55
+ V+GASG++G L LL++G++VRA VR +++ LP +E L L D+ D
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLAD 67
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLPDP-SRFFAVNVEGLKNVVQAAKETKTVEKIIYTS 114
S +A GC +FH A ++ DP + +EG+ ++++ KTV ++++TS
Sbjct: 68 EGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS 127
Query: 115 SFFALGSTDGYI--------ADENQVHEEKYFCTQYERSKAVADKIALQAASE-GLPIVP 165
S + + + +D +K Y SK +A++ A + A E + +
Sbjct: 128 SAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFIT 187
Query: 166 VYPGVIYGP 174
+ P ++ GP
Sbjct: 188 IIPTLVVGP 196
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 18/190 (9%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVR----RTSDISGLPS-EGALELVY---GDV 53
++ V+G +G+LG + +LL+ G+SV +R R D+S L + GA E ++ D+
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 54 TDYRSLVDACFGCHVIFHTAALVEPWLPDPSRFFAV-NVEGLKNVVQAAKETKTVEKIIY 112
++ S A GC IFHTA+ ++ + +P V+G +++A +KTV++ IY
Sbjct: 63 SNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIY 122
Query: 113 TSSFFAL--GSTDGYIADENQ------VHEEKYFCTQYERSKAVADKIALQ-AASEGLPI 163
TSS A+ D + DE+ + K F Y SK +A+K L+ G+ +
Sbjct: 123 TSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDV 182
Query: 164 VPVYPGVIYG 173
V + I G
Sbjct: 183 VTLILPFIVG 192
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 5 VSGASGYLGGRLCHALLKQGHSVRALVR------RTSDISGLPSEGALELVYGDVTDYRS 58
V G +G++ L LL++G++V VR + S + L G L++ D+TD S
Sbjct: 14 VVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELS 73
Query: 59 LVDACFGCHVIFHTAALVEPWLPDPSR-FFAVNVEGLKNVVQAAKETKTVEKIIYTSSFF 117
GC +FH A V DP ++G+ NV++A K+V+++I TSS
Sbjct: 74 FEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAA 133
Query: 118 ALGSTD----GYIADENQVHEEKYFCTQ------YERSKAVADKIALQAASE-GLPIVPV 166
A+ G + DE + ++ + Y SK +A+K A + A E + ++ V
Sbjct: 134 AVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITV 193
Query: 167 YPGVIYG 173
P ++ G
Sbjct: 194 IPTLMAG 200
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVDA 62
ILV+G++G +G + AL QG +VR R S G E V G + D ++L DA
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGG-------EEVVGSLEDGQALSDA 74
Query: 63 CFGCHVIFHTAALVEPWLP-DPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSS 115
G + H A + W P D R FAVNVEG + ++ AA V + ++ SS
Sbjct: 75 IMGVSAVLHLGAFMS-WAPADRDRMFAVNVEGTRRLLDAAS-AAGVRRFVFASS 126
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 37/208 (17%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSV---RALVRR--TSDISGLPSEGALELVYGDVTDY 56
K+L++G G+LG L L QG + L R+ T ++ L S G E V+GD+ +
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 57 RSLV--------DACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVE 108
+ D+CF H+ A + +P F +NV G N+++A ++ +
Sbjct: 63 NDVTRLITKYMPDSCF--HLAGQVAMTTS--IDNPCMDFEINVGGTLNLLEAVRQYNSNC 118
Query: 109 KIIYTSSFFALGSTDGYIADENQVHEEKYFCTQ----------------YERSKAVADKI 152
IIY+S+ G + Y +E E +Y C Y SK AD+
Sbjct: 119 NIIYSSTNKVYGDLEQYKYNET---ETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQY 175
Query: 153 ALQAASE-GLPIVPVYPGVIYGPGKLTT 179
L A GL V +YG + T
Sbjct: 176 MLDYARIFGLNTVVFRHSSMYGGRQFAT 203
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRAL-------VRRTSDISGLPSE---GALELVYGDV 53
L++G +G++G L LLK V L R ++ L SE + + GD+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 54 TDYRSLVDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKII 111
+ +AC G + H AAL V + DP A N++G N++ AA++ K V+
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFT 149
Query: 112 YTSSFFALGSTDGYIADENQVHE--EKYFCTQY 142
Y +S G G E+ + + Y T+Y
Sbjct: 150 YAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKY 182
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRR----------TSDISGLPSEGALELVYGDV 53
L++GA+G+LG L AL H + +R ++++ SE +E++ ++
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNI 213
Query: 54 T----DYRSLVDACF--GCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTV 107
D+ + D I H A + + D F VNV+G +V++ A++
Sbjct: 214 EVIVGDFECMDDVVLPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQHHA- 271
Query: 108 EKIIYTS-----SFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIALQAASEGLP 162
++IY S ++F + + D + E V++ + + Y RSK ++ L+A + GL
Sbjct: 272 -RLIYVSTISVGTYFDIDTEDVTFS-EADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLD 329
Query: 163 IVPVYPGVIYGP 174
V G + P
Sbjct: 330 GRIVRVGNLTSP 341
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALE--------LVYGDV 53
+IL+ GA+GY+G + A L GH LVR ++ S LE +V+G +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 54 TDYRSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
D+ SLV+A V+ T ++ +E N+++A KE TV++
Sbjct: 66 DDHASLVEAVKNVDVVISTVG-------------SLQIESQVNIIKAIKEVGTVKR 108
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVR-RTSDISGLPSEGALELVYGDVTDYRSL 59
M+IL++G +G LG L L QGH + + T LP L ++ G VTD L
Sbjct: 21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLL 80
Query: 60 ---VDACFGCHVIFHTAALVEP--WLPDPSRFFAVNVEGLKNVVQAAKE 103
D+ HV+ AA +P W D A NV+G NV +AA +
Sbjct: 81 ERAFDSFKPTHVVHSAAAYKDPDDWAED----AATNVQGSINVAKAASK 125
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
M+I+V+G +G++G L L++ G+ V + DI + G+ EL D+ DY
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVV-----DIVQRDTGGSAELHVRDLKDYSW-- 53
Query: 61 DACFGCHVIFHTAALVEPWLP--DPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
A V+FH AA E L +P F NV NV++ A++T V +++ SS
Sbjct: 54 GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVVFASSSTV 112
Query: 119 LGSTD 123
G D
Sbjct: 113 YGDAD 117
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 25/192 (13%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRR----------TSDISGLPSEGALELVYGDV 53
L++GA+G+LG L AL H + +R ++++ SE +E ++
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXLSNI 132
Query: 54 T----DYRSLVDACF--GCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTV 107
D+ D I H A + + D F VNV+G +V++ A++
Sbjct: 133 EVIVGDFECXDDVVLPENXDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQHHA- 190
Query: 108 EKIIYTS-----SFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIALQAASEGLP 162
++IY S ++F + + D + E V++ + + Y RSK ++ L+A + GL
Sbjct: 191 -RLIYVSTISVGTYFDIDTEDVTFS-EADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLD 248
Query: 163 IVPVYPGVIYGP 174
V G + P
Sbjct: 249 GRIVRVGNLTSP 260
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVDA 62
ILV+G+SG +G L L + + + ++ SDI + G ++ + DV++ R +D
Sbjct: 2 ILVTGSSGQIGTELV-PYLAEKYGKKNVI--ASDIVQRDT-GGIKFITLDVSN-RDEIDR 56
Query: 63 C---FGCHVIFHTAALVE-PWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
+ IFH A ++ DP+ + VN+ G N+++AAK+ + VEK++ S+
Sbjct: 57 AVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGV 115
Query: 119 LG 120
G
Sbjct: 116 FG 117
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVDA 62
ILV+G+SG +G L L + + + ++ SDI + G ++ + DV++ R +D
Sbjct: 2 ILVTGSSGQIGTELV-PYLAEKYGKKNVI--ASDIVQRDT-GGIKFITLDVSN-RDEIDR 56
Query: 63 C---FGCHVIFHTAALVE-PWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
+ IFH A ++ DP+ + VN+ G N+++AAK+ + VEK++ S+
Sbjct: 57 AVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGV 115
Query: 119 LG 120
G
Sbjct: 116 FG 117
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
M+I+V+G +G++G L L++ G+ V + +S + A EL D+ DY
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSA-ELHVRDLKDYSW-- 57
Query: 61 DACFGCHVIFHTAALVEPWLP--DPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
A V+FH AA E L +P F NV NV++ A++T V +++ SS
Sbjct: 58 GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVVFASSSTV 116
Query: 119 LGSTD 123
G D
Sbjct: 117 YGDAD 121
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGH------SVRALVRRT-----SDISGLPSEGALELV 49
M++LV+G +G++G LL + V L T ++++ + ++ L V
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 50 YGDVTDYRSLVDACFGCHVIFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTV 107
+GD+ D L G I H AA V+ + S F NV+G + ++Q A + V
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V 119
Query: 108 EKIIYTSSFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIA 153
++++ S+ GS D E+ E + Y SKA +D +A
Sbjct: 120 GRVVHVSTNQVYGSIDSGSWTESSPLEPN---SPYAASKAGSDLVA 162
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGH------SVRALVRRT-----SDISGLPSEGALELV 49
M++LV+G +G++G LL + V L T ++++ + ++ L V
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 50 YGDVTDYRSLVDACFGCHVIFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTV 107
+GD+ D L G I H AA V+ + S F NV+G + ++Q A + V
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V 119
Query: 108 EKIIYTSSFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIA 153
++++ S+ GS D E+ E + Y SKA +D +A
Sbjct: 120 GRVVHVSTDEVYGSIDSGSWTESSPLEPN---SPYAASKAGSDLVA 162
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGST 122
I++SS G
Sbjct: 119 FIFSSSATVYGDN 131
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGST 122
I++SS G
Sbjct: 119 FIFSSSATVYGDN 131
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 1 MKILVSGASGYLGGRLCHALLKQ--GHSVRALVRRTSDISGLPSEGALELVYGDVTDYRS 58
M I V+GA+G LGG + LLK+ + A+VR S L +G +E+ +GD S
Sbjct: 1 MSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQG-VEVRHGDYNQPES 59
Query: 59 LVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
L A G + ++ P + + NVV+AA++ V+ I YT FA
Sbjct: 60 LQKAFAGVSKLL--------FISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFA 110
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGS 121
I++SS G
Sbjct: 119 FIFSSSATVYGD 130
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGS 121
I++SS G
Sbjct: 119 FIFSSSATVYGD 130
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGST 122
I++S+ G
Sbjct: 119 FIFSSTATVYGDN 131
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGST 122
I++S+ G
Sbjct: 119 FIFSSAATVYGDN 131
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGST 122
I++S+ G
Sbjct: 119 FIFSSAATVYGDN 131
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGS 121
I++S+ G
Sbjct: 119 FIFSSAATVYGD 130
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTSSFFALGS 121
I++S+ G
Sbjct: 119 FIFSSAATVYGD 130
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLPSEGAL-----ELVYGDVT 54
M++LV+G SGY+G C LL+ GH V L S S LP L V GD+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 55 DYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ +L+ H I H A L V + P ++ NV G ++ A + V+
Sbjct: 61 N-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKN 118
Query: 110 IIYTS 114
I++S
Sbjct: 119 FIFSS 123
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGL-PSEGALELVYGDVTDYRSLV 60
++LV+GA+G +G + L H V R SDI L +E E+V D+ D +++
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEV-----RLSDIVDLGAAEAHEEIVACDLADAQAVH 58
Query: 61 DACFGCHVIFHTA--ALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
D C I H ++ PW + N+ G N+ +AA+ +I++ SS
Sbjct: 59 DLVKDCDGIIHLGGVSVERPW----NDILQANIIGAYNLYEAARNLGK-PRIVFASSNHT 113
Query: 119 LG 120
+G
Sbjct: 114 IG 115
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 3 ILVSGASGYLGGRLCHALLKQ--GHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
I V+GA+G LGG + LLK+ + A+VR S L +G +E+ +GD SL
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQG-VEVRHGDYNQPESLQ 61
Query: 61 DACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
A G + ++ P + + NVV+AA++ V+ I YT FA
Sbjct: 62 KAFAGVSKLL--------FISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFA 110
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS--------GLPS---EGALELVYGD 52
L++G +G G L LL++G+ V +VRR+S + P EG ++L YGD
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 87
Query: 53 VTDYRSLV 60
+TD LV
Sbjct: 88 LTDSTCLV 95
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVDA 62
IL+ G +GY+G L+ +G SV + + +EGA + GD+ D L D
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGA-KFYNGDLRDKAFLRDV 62
Query: 63 CFGCHV--IFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFA 118
++ + H AA LV + P +++ NV G +++ E K V+K I++S+
Sbjct: 63 FTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VDKFIFSSTAAT 121
Query: 119 LGSTD 123
G D
Sbjct: 122 YGEVD 126
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELV-----------Y 50
KIL+ G +G +G + A +K G+ ALVR+T I+ E EL+
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKT--ITAANPETKEELIDNYQSLGVILLE 61
Query: 51 GDVTDYRSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKI 110
GD+ D+ +LV A ++ A R +E +++A KE V+K
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAG----------RLL---IEDQVKIIKAIKEAGNVKK- 107
Query: 111 IYTSSFFALGSTDGYIADE--NQVHEEK 136
+ S F L D + A E QV EEK
Sbjct: 108 -FFPSEFGL-DVDRHDAVEPVRQVFEEK 133
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 9 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 67
Query: 58 SLVDACFGCHVIFHTAALVEPWLPDPSRFF-AVNVEG 93
LV+ V+ +AL P + D + A+ V G
Sbjct: 68 KLVELMKKVDVVI--SALAFPQILDQFKILEAIKVAG 102
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 71
Query: 58 SLVDACFGCHVIFHTAALVEPWLPDPSRFF-AVNVEG 93
LV+ V+ +AL P + D + A+ V G
Sbjct: 72 KLVELMKKVDVVI--SALAFPQILDQFKILEAIKVAG 106
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 71
Query: 58 SLVDACFGCHVIFHTAALVEPWLPDPSRFF-AVNVEG 93
LV+ V+ +AL P + D + A+ V G
Sbjct: 72 KLVELMKKVDVVI--SALAFPQILDQFKILEAIKVAG 106
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 1 MKILVSGASGYLGGRLCHALLKQ-GHSV------------------RALVRRTSDISGLP 41
M++LV G +GY+G ALL+ HSV R V R S P
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 42 SE------GALELVYGDVTDYRSLVDACFGCH----VIFHTAAL--VEPWLPDPSRFFAV 89
ALE+ GDV + ++ F H + H A V + DP +++
Sbjct: 63 KPPWADRYAALEV--GDVRN-EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN 119
Query: 90 NVEGLKNVVQAAKETKTVEKIIYTSSFFALGS-TDGYI---ADENQVHEEKYFCTQYERS 145
NV G+ ++QA K +KII++SS G+ T G + A+ ++ +K + Y S
Sbjct: 120 NVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGES 178
Query: 146 KAVADKIALQAA 157
K +A+++ A
Sbjct: 179 KLIAERMIRDCA 190
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 71
Query: 58 SLVDACFGCHVIFHTAAL 75
LV+ V+ A+
Sbjct: 72 KLVELMKKVDVVISALAV 89
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE------GALEL-VYGDVTD 55
+LV+GA+G++ + LL+ G+ VR R S ++ L G E V D+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK 73
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSS 115
+ + G + H A++V + + G N ++AA T +V++ + TSS
Sbjct: 74 QGAYDEVIKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGH-SVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
K+L+ G +G++G L +L+ V + +T + L + GD+T + V
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWV 85
Query: 61 D-ACFGCHVIFHTAALVEP--WLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIY--TSS 115
+ C VI A+ P ++ P R F ++ E +V++A K + +++ TS
Sbjct: 86 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSA--VKYGKHLVFPSTSE 143
Query: 116 FFALGSTDGYIADENQ-----VHEEKYFCTQYERSKAVADKIALQAASEGLPIVPVYPGV 170
+ + + + + D + +++ ++ Y SK + D++ EGL P
Sbjct: 144 VYGMCADEQFDPDASALTYGPINKPRWI---YACSKQLMDRVIWGYGMEGLNFTLFRPFN 200
Query: 171 IYGPG 175
GPG
Sbjct: 201 WIGPG 205
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE------GALEL-VYGDVTD 55
+LV+GA+G++ + LL+ G+ VR R S ++ L G E V D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDXLK 73
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSS 115
+ + G + H A++V + + G N ++AA T +V++ + TSS
Sbjct: 74 QGAYDEVIKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE------GALELVYGDVTD 55
I+V+G +G++G H + V V +G + +ELV GD+ D
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 65
Query: 56 YRSLVDACFGCHVIFHTAALV--EPWLPDPSRFFAVNVEGLKNVVQAAKE 103
+ I H AA + L DPS F N G +++AA++
Sbjct: 66 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK 115
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEG--ALELVYGDV---TDY 56
KI + GA+G G ++ G+ V LVR D S LPSEG +V GDV D
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVR---DSSRLPSEGPRPAHVVVGDVLQAADV 61
Query: 57 RSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSF 116
V V+ T + P V EG +N+V AA + V+K++ +S
Sbjct: 62 DKTVAGQDAVIVLLGTRNDLSPT--------TVMSEGARNIV-AAMKAHGVDKVVACTSA 112
Query: 117 FAL 119
F L
Sbjct: 113 FLL 115
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS------GLPSEGALELVYGDVTD 55
KI + GA+G G R+ +GH V A+VR I+ + + +L D++D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSD 61
Query: 56 YRSLVDA 62
+VDA
Sbjct: 62 QNVVVDA 68
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRR--TSDISGLP-----SEGALELVYGDVT 54
++L+ G +GY+G R+ +A + GH L R S+I + + +L+ +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 65
Query: 55 DYRSLVDACFGCHVIFHTAA 74
D++ LVDA V+ A
Sbjct: 66 DHQRLVDALKQVDVVISALA 85
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVR--------RTSDISGLPSEGALELVYGD 52
MK+LV+G G++G +L++ H ++ +++ L + V GD
Sbjct: 4 MKLLVTGGMGFIGSNFIRYILEK-HPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 53 VTDYRSLVDACFGCHVIFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKI 110
V DY + + + H AA V+ + P F NV G ++++ + +
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 111 IYTSSFFALGST-DGYIADENQVHEEKYFCTQYERSKAVADKIAL 154
++ S+ G G + +++ + Y +KA +D + L
Sbjct: 123 VHVSTDEVYGDILKGSFTENDRLMP----SSPYSATKAASDMLVL 163
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 31/187 (16%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE-----GALELVYGDVTD 55
M+ILV+G SG +G +A+ + +D +GLP E + + D
Sbjct: 7 MRILVTGGSGLVG--------------KAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQ 52
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLPDPS---RFFAVNVEGLKNVVQAAKETKTVEKIIY 112
R+L + HVI H AA+V + F+ NV NV+ +A E K++
Sbjct: 53 TRALFEKVQPTHVI-HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-ARKVVS 110
Query: 113 TSSFFALGSTDGYIADENQVHEEKYFCTQYERSKA-----VADKIALQAASEGLPIVPVY 167
S Y DE +H + + S A V ++ Q G V
Sbjct: 111 CLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQ--QYGCTFTAVI 168
Query: 168 PGVIYGP 174
P ++GP
Sbjct: 169 PTNVFGP 175
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 31/187 (16%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE-----GALELVYGDVTD 55
M+ILV+G SG +G +A+ + +D +GLP E + + D
Sbjct: 8 MRILVTGGSGLVG--------------KAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQ 53
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLPDPS---RFFAVNVEGLKNVVQAAKETKTVEKIIY 112
R+L + HVI H AA+V + F+ NV NV+ +A E K++
Sbjct: 54 TRALFEKVQPTHVI-HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-ARKVVS 111
Query: 113 TSSFFALGSTDGYIADENQVHEEKYFCTQYERSKA-----VADKIALQAASEGLPIVPVY 167
S Y DE +H + + S A V ++ Q G V
Sbjct: 112 CLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQ--QYGCTFTAVI 169
Query: 168 PGVIYGP 174
P ++GP
Sbjct: 170 PTNVFGP 176
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRAL----VRRTSDISGLPSEGALELVYGDVTDYR 57
+IL++G +G++G L L+ GH V + R ++ EL+ DV +
Sbjct: 7 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 66
Query: 58 SL-VDACFGCHVIFHTAALVEP--WLPDPSRFFAVNVEGLKNVVQAAK 102
+ VD I+H A+ P ++ +P + N G N++ AK
Sbjct: 67 YIEVDQ------IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK 108
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALEL-------VYGDVTD 55
IL++G +G G +L ++ + +V ++ SE A+E GDV D
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQ--SEMAMEFNDPRMRFFIGDVRD 81
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLP--DPSRFFAVNVEGLKNVVQA 100
L A G + H AAL + +P N+ G NV+ A
Sbjct: 82 LERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINA 128
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 12/193 (6%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
+K V GA+G LG A+ GH + + R +S I L + E ++ D+ L
Sbjct: 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL-AYLEPECRVAEMLDHAGLE 72
Query: 61 DACFGCHVIFHTAALVEPWLPDPSRFFAVNVE---GLKNVVQAAKETKTVEKIIYTSSFF 117
A G + +A + P R + V G N AA V +I+Y S +
Sbjct: 73 RALRGLDGVIFSAG----YYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAY 128
Query: 118 ALGS-TDGYIADENQVHEE-KYFCTQYERSKAVADKIALQAASEGLPIVPVYPGVIYGPG 175
A+ G E ++ + Y K D+ A + A GLP+V PG++ G
Sbjct: 129 AMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGEL 188
Query: 176 KL--TTGNLVAKL 186
+ TTG ++ +
Sbjct: 189 DIGPTTGRVITAI 201
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 38/192 (19%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDI---SGLPSEGALELVYGDVTDY-- 56
+IL++G +G++GG L AL+ G V L D+ +P EG + + V +
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVL----DDLRVPPMIPPEGTGKFLEKPVLELEE 64
Query: 57 RSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNV-----VQAAKETKTVEKII 111
R L D H+ H + R F ++ L NV + A + V K++
Sbjct: 65 RDLSDVRLVYHLASHKSV---------PRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVV 115
Query: 112 YTSSFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIALQAASEGLPIVPVYPGV- 170
S+ G D E+ RS A K+ L+ + V P V
Sbjct: 116 VGSTCEVYGQADTLPTPED--------SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVG 167
Query: 171 ------IYGPGK 176
+YGPG+
Sbjct: 168 IVRFFNVYGPGE 179
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 2 KILVSGASGYLGGRLCHALLKQGH----------------SVRALVRRTSDISGLPSEGA 45
K+LV+G +GY+G LL+ G+ S+ +RR +++G +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR----S 59
Query: 46 LELVYGDVTDYRSL--VDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAA 101
+E D+ D +L + + + H A L V + P ++ VN+ G +++
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 102 KETKTVEKIIYTSSFFALGSTDGYIADE--------NQVHEEKYFCTQYERSKAVADK 151
K V+ ++++SS G+ DE N + K+F + R ADK
Sbjct: 120 K-AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADK 176
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 2 KILVSGASGYLGGRLCHALLKQGH----------------SVRALVRRTSDISGLPSEGA 45
K+LV+G +GY+G LL+ G+ S+ +RR +++G +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR----S 59
Query: 46 LELVYGDVTDYRSL--VDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAA 101
+E D+ D +L + + + H A L V + P ++ VN+ G +++
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 102 KETKTVEKIIYTSSFFALGSTDGYIADE--------NQVHEEKYFCTQYERSKAVADK 151
K V+ ++++SS G+ DE N + K+F + R ADK
Sbjct: 120 K-AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADK 176
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSV----------RALVRRTSDISG-LPSEGALELVYG 51
ILV+G +GY+G LL G+ V R + R I+G P+
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPA-----FHET 62
Query: 52 DVTDYRSLVDACFGCHVI---FHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKT 106
DV+D R+L F H I H AAL V + P ++ N++ L ++++ +E +
Sbjct: 63 DVSDERALAR-IFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE-RA 120
Query: 107 VEKIIYTSSFFALGSTDGYIADE-------NQVHEEKYFCTQYERSKAVAD 150
V++I+++SS G + DE N + K Q R AD
Sbjct: 121 VKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAAD 171
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE-GALELVYGDVTDYRSL 59
++ LV+GA +G AL G V A+ R SD+ L E +E V D+ D+ +
Sbjct: 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDAT 67
Query: 60 VDACFG---CHVIFHTAALV--EPWLPDP----SRFFAVNVEGLKNVVQ 99
A G ++ + AALV +P+L R F+VN+ + V Q
Sbjct: 68 EKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 116
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVR--------RTSDISGLPSEGALELVYGDV 53
ILV+G +G++G H L Q + ++ +++ + V G++
Sbjct: 26 NILVTGGAGFIGSNFVHYXL-QSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEI 84
Query: 54 TDYRSL--VDACFGCHVIFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEK 109
+ L V VI + AA V+ + +P F+ NV G +++ K+ + K
Sbjct: 85 QNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-K 143
Query: 110 IIYTSS---FFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIALQ-AASEGLPIVP 165
++ S+ + +LG T G +E + + Y SKA AD IAL + LP++
Sbjct: 144 LVQVSTDEVYGSLGKT-GRFTEETPLAPN----SPYSSSKASADXIALAYYKTYQLPVIV 198
Query: 166 VYPGVIYG----PGKLTTGNLVAKLQWKKVDLVKD 196
YG P KL + L+ KK+ L D
Sbjct: 199 TRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLYGD 233
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 3 ILVSGASGYLGGRLCHALLKQ--GHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
I ++GA+G LG + +L+K + A+VR + L ++G + + D D +L
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQG-ITVRQADYGDEAALT 60
Query: 61 DACFGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTSSFFALG 120
A G VE L S +NV+ AAK V+ I YTS A
Sbjct: 61 SALQG----------VEKLLLISSSEVGQRAPQHRNVINAAKAAG-VKFIAYTSLLHADT 109
Query: 121 STDGYIADENQVHEEKYFC 139
S G +ADE+ + EK
Sbjct: 110 SPLG-LADEH-IETEKMLA 126
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 2 KILVSGASGYLGGRLCHALLKQGH----------------SVRALVRRTSDISGLPSEGA 45
K+LV+G +GY+G LL+ G+ S+ +RR +++G +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR----S 59
Query: 46 LELVYGDVTDYRSL--VDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAA 101
+E D+ D +L + + + H A L + + P ++ VN+ G +++
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 102 KETKTVEKIIYTSSFFALGSTDGYIADE--------NQVHEEKYFCTQYERSKAVADK 151
K V+ ++++SS G+ DE N + K+F + R ADK
Sbjct: 120 K-AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADK 176
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRR-----TSDISGLPSEGALELVYGDVTDYR 57
I V GA+G G L GH VRA V ++ +P+ + L G + +
Sbjct: 8 IAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPN---VTLFQGPLLNNV 64
Query: 58 SLVDACF-GCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKIIYTS 114
L+D F G H+ F + + K++ AAK T++ IY+S
Sbjct: 65 PLMDTLFEGAHLAFINT----------TSQAGDEIAIGKDLADAAKRAGTIQHYIYSS 112
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 24/187 (12%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRAL-----VRRTSDISGLPSEGALELVYGDVTD 55
M++LV+G +G++G + LL +G V L +R + G+P D+ D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVP------FFRVDLRD 54
Query: 56 YRSLVDACF----GCHVIFHTA-ALVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKI 110
+ V+ F HV A A V+ + DP F VN+ G N+++A ++ VEK+
Sbjct: 55 -KEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKL 112
Query: 111 IYTSSFFALGS--TDGYIADENQVHEEKYFCTQYERSKAVADK-IALQAASEGLPIVPVY 167
++ S+ A+ +G A+E K + Y SKA + +++ S GL V +
Sbjct: 113 VFASTGGAIYGEVPEGERAEETWPPRPK---SPYAASKAAFEHYLSVYGQSYGLKWVSLR 169
Query: 168 PGVIYGP 174
G +YGP
Sbjct: 170 YGNVYGP 176
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYR 57
LV+GASG +G + AL++QG V R +I L +E G + YR
Sbjct: 36 LVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 89
>pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|B Chain B, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|C Chain C, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|D Chain D, Improved Nadph-Dependent Blue Fluorescent Protein
Length = 266
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 35/189 (18%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVDA 62
++++GAS +G + ++GH + L RR + L L DVTD + A
Sbjct: 19 VVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTL-CAQVDVTDKYTFDTA 77
Query: 63 CFGCHVIFHTAALV-----------------EPWLPDPSRFFAVNVEGLKNVVQAA---K 102
I+ A + W R F VNV GL N +QA
Sbjct: 78 ITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEW----QRMFDVNVLGLLNGMQAVLAPM 133
Query: 103 ETKTVEKIIYTSSFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIALQAASEGLP 162
+ + II SS IA + + +C A+++ + + A+ +
Sbjct: 134 KARNCGTIINISS----------IAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVR 183
Query: 163 IVPVYPGVI 171
++ + P +
Sbjct: 184 VMTIAPSAV 192
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE------GALELVYGDVT-- 54
I + GA+G +G +L L+K G V + + I E GA++ D++
Sbjct: 17 IAIIGAAGXVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAP 76
Query: 55 -DYRSLVDACFGCHVIFHTAALV--EPWLPDPSRFFAVNVEGLKNVVQAAKETKTVE--- 108
+ LV+A VIFH AA+V E L D + + +N++G + + A + +
Sbjct: 77 GEAEKLVEAR--PDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIRIANGKDGYK 133
Query: 109 -KIIYTSSFFALGSTDGY-IADENQVHEEKYFCTQ 141
++++TSS G+ Y I DE + TQ
Sbjct: 134 PRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQ 168
>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of
Saccharomyces Cerevisiae Doa1UFD3
Length = 362
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 6 SGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLP-SEGALELVYGDVTDYRSLVDAC 63
S AS L A+ + ALV + SD+ LP A+ YG + +Y+ +A
Sbjct: 255 SQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAA 314
Query: 64 FGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNV 97
+ V + A VEP L R FA +V L N+
Sbjct: 315 YRLTVAYGNLATVEPTL----RQFANSVTWLANI 344
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRAL----VRRTSDISGLPSEGALELVYGDVTDYR 57
+IL++G +G++G L L GH V + R ++ EL+ DV +
Sbjct: 29 RILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 88
Query: 58 SL-VDACFGCHVIFHTAALVEP--WLPDPSRFFAVNVEGLKNVVQAAK 102
+ VD I+H A+ P + +P + N G N + AK
Sbjct: 89 YIEVDQ------IYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAK 130
>pdb|3GAE|A Chain A, Crystal Structure Of Pul
pdb|3GAE|B Chain B, Crystal Structure Of Pul
Length = 253
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 6 SGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLP-SEGALELVYGDVTDYRSLVDAC 63
S AS L A+ + ALV + SD+ LP A+ YG + +Y+ +A
Sbjct: 146 SQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAA 205
Query: 64 FGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNV 97
+ V + A VEP L R FA +V L N+
Sbjct: 206 YRLTVAYGNLATVEPTL----RQFANSVTWLANI 235
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 6 SGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLP-SEGALELVYGDVTDYRSLVDAC 63
S AS L A+ + ALV + SD+ LP A+ YG + +Y+ +A
Sbjct: 318 SQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAA 377
Query: 64 FGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNV 97
+ V + A VEP L R FA +V L N+
Sbjct: 378 YRLTVAYGNLATVEPTL----RQFANSVTWLANI 407
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 6 SGASGYLGGRLCHALLKQGHSVRALVRR-TSDISGLP-SEGALELVYGDVTDYRSLVDAC 63
S AS L A+ + ALV + SD+ LP A+ YG + +Y+ +A
Sbjct: 318 SQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAA 377
Query: 64 FGCHVIFHTAALVEPWLPDPSRFFAVNVEGLKNV 97
+ V + A VEP L R FA +V L N+
Sbjct: 378 YRLTVAYGNLATVEPTL----RQFANSVTWLANI 407
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From
Escherichia Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From
Escherichia Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE 43
M +LV+GA+ G + ++QGH V A RR + L E
Sbjct: 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDE 43
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEG--------ALELVYGDV 53
KIL++G +G++G L ++ + +V + + L S A E V D+
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKV--DI 60
Query: 54 TDYRSLVDACFGCH---VIFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVE 108
D R+ + F H + H AA V+ + P+ F N+ G +++AA+
Sbjct: 61 CD-RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 109 KIIYTSSF-FALGSTDGYIADENQVHEEKYFCTQ---------YERSKAVADKIALQ-AA 157
S+F F STD D +H F T+ Y SKA +D +
Sbjct: 120 TEDKKSAFRFHHISTDEVYGD---LHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLR 176
Query: 158 SEGLPIVPVYPGVIYGP 174
+ GLP + YGP
Sbjct: 177 TYGLPTLITNCSNNYGP 193
>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
Length = 404
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 132 VHEEKYFCTQYERSKAVADKIALQAASEGLPIVPVYPGVIYGPGKLTTGNLVAKLQWKKV 191
VH YF + AV D++ L+ E LP+ P++ +G +++ L Q+ +
Sbjct: 99 VHGGSYF-----KKSAVIDEVVLKELKECLPLAPIHNPSSFGVIEISMKELPTTRQYVAI 153
Query: 192 D 192
D
Sbjct: 154 D 154
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVD 61
+++++GA+G LG +L L + + + ++ DI+ + V V + R
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQ------VQQVVQEIRP--- 57
Query: 62 ACFGCHVIFHTAALVEPWLPDPSRFFA--VNVEGLKNVVQAAKETKTVEKIIYTSS 115
H+I H AA + + R A +N G +NV A++ K++Y S+
Sbjct: 58 -----HIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIST 106
>pdb|3TFO|A Chain A, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|B Chain B, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|C Chain C, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|D Chain D, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
Length = 264
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 43/195 (22%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE------GALELVYGDVTDY 56
IL++GASG +G + L G + RR + I + +E AL V DVTD
Sbjct: 7 ILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVL-DVTDR 65
Query: 57 RSL-------VDACFGCHVIFHTAAL----------VEPWLPDPSRFFAVNVEGL---KN 96
S+ VD V+ + A + V+ W R VN++G+
Sbjct: 66 HSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEW----ERMIDVNIKGVLWGIG 121
Query: 97 VVQAAKETKTVEKIIYTSSFFALGSTDGYIADENQVHEEKYFCTQYERSKAVADKIALQA 156
V E + +II S AL + V +C +A++D L+
Sbjct: 122 AVLPIMEAQRSGQIINIGSIGAL----------SVVPTAAVYCATKFAVRAISD--GLRQ 169
Query: 157 ASEGLPIVPVYPGVI 171
S + + V PGV+
Sbjct: 170 ESTNIRVTCVNPGVV 184
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTS-------DISGLPSEGALE---LVYGDV 53
L++G +G++G L LLK V L ++ ++ L S + GD+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 54 TDYRSLVDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKII 111
D + G + H AAL V + DP A N+ G N++ AAK + V+
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFT 147
Query: 112 YTSSFFALG 120
Y +S G
Sbjct: 148 YAASSSTYG 156
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTS-------DISGLPSEGALE---LVYGDV 53
L++G +G++G L LLK V L ++ ++ L S + GD+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 54 TDYRSLVDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKII 111
D + G + H AAL V + DP A N+ G N++ AAK + V+
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFT 147
Query: 112 YTSSFFALG 120
Y +S G
Sbjct: 148 YAASSSTYG 156
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTS-------DISGLPSEGALE---LVYGDV 53
L++G +G++G L LLK V L ++ ++ L S + GD+
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 54 TDYRSLVDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKII 111
D + G + H AAL V + DP A N+ G N++ AAK + V+
Sbjct: 83 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFT 141
Query: 112 YTSSFFALG 120
Y +S G
Sbjct: 142 YAASSSTYG 150
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTS-------DISGLPSEGALE---LVYGDV 53
L++G +G++G L LLK V L ++ ++ L S + GD+
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 54 TDYRSLVDACFGCHVIFHTAAL--VEPWLPDPSRFFAVNVEGLKNVVQAAKETKTVEKII 111
D + G + H AAL V + DP A N+ G N++ AAK + V+
Sbjct: 102 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFT 160
Query: 112 YTSSFFALG 120
Y +S G
Sbjct: 161 YAASSSTYG 169
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSD---------ISGLPS 42
++LV G +G++G L L +GH V + R+ SGLPS
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPS 51
>pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli
Cfn 42
pdb|4E3Z|B Chain B, Crystal Structure Of A Oxidoreductase From Rhizobium Etli
Cfn 42
Length = 272
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 49/202 (24%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVR---ALVRRTSD--ISGLPSEGALEL-VYGDVTDY 56
+LV+G S +G +C +QG V A R +D ++ + G + + GDV +
Sbjct: 29 VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNA 88
Query: 57 R------SLVDACFG-CHVIFHTAALVE-PWLPDP------SRFFAVNVEGLKNVVQAAK 102
S VD FG + + A +V+ P D R VNV G +++ AA+
Sbjct: 89 ADIAAXFSAVDRQFGRLDGLVNNAGIVDYPQRVDEXSVERIERXLRVNVTG--SILCAAE 146
Query: 103 ETKTVEK--------IIYTSSFFA-LGSTDGYIADENQVHEEKYFCTQYERSKAVADK-- 151
+ + I+ SS A LGS Y+ Y SKA D
Sbjct: 147 AVRRXSRLYSGQGGAIVNVSSXAAILGSATQYV--------------DYAASKAAIDTFT 192
Query: 152 --IALQAASEGLPIVPVYPGVI 171
+A + A+EG+ + V PG+I
Sbjct: 193 IGLAREVAAEGIRVNAVRPGII 214
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTS------DISGLPSEGALELVYGDVT 54
MKIL++G +G++G + ++K + + + +S + + D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 55 DYRSL--VDACFGCHVIFHTAA--LVEPWLPDPSRFFAVNVEGLKNVVQAAKE 103
D + + + + H AA V+ + P+ F N+ G +++ A++
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK 113
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTD-----Y 56
++LV GA+G + L L +GH A VR L GA ++V ++ + +
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPELRERGASDIVVANLEEDFSHAF 82
Query: 57 RSLVDACFGCHVIFHTAA----LVEPW 79
S+ F HT A L++ W
Sbjct: 83 ASIDAVVFAAGSGPHTGADKTILIDLW 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,227
Number of Sequences: 62578
Number of extensions: 273769
Number of successful extensions: 788
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 99
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)