BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027008
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9S3|WHY1_ARATH Single-stranded DNA-binding protein WHY1, chloroplastic
OS=Arabidopsis thaliana GN=WHY1 PE=1 SV=1
Length = 263
Score = 290 bits (742), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 140/189 (74%), Positives = 164/189 (86%), Gaps = 7/189 (3%)
Query: 41 SIKKKKLY-VKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALT 99
+ K KL+ VK RQ++Y+E++ F S S+ S A LP R YVGHSIYKGKAALT
Sbjct: 42 TTKTVKLFSVKSRQTDYFEKQRFGDSSSSPSPAEG------LPARFYVGHSIYKGKAALT 95
Query: 100 VEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGA 159
V+PR PEFV+LDSGA KLS++GF++LQFAP+AGVRQYDWS+KQVFSLSVTEIG+LV+LG
Sbjct: 96 VDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGP 155
Query: 160 RESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAE 219
RESCEFFHDPFKGKS+EGKVRKVLKVEPLPDGSGHFFNLSVQNKL+N+DESIYIP+TRAE
Sbjct: 156 RESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAE 215
Query: 220 YTVLVSAFN 228
+ VL+SAFN
Sbjct: 216 FAVLISAFN 224
>sp|Q66GR6|WHY3_ARATH Single-stranded DNA-binding protein WHY3, chloroplastic
OS=Arabidopsis thaliana GN=WHY3 PE=1 SV=1
Length = 268
Score = 277 bits (708), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 158/184 (85%), Gaps = 8/184 (4%)
Query: 46 KLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGP 105
KL VK RQS+Y+E++ F S S+ + + R YVGHSIYKGKAALT+EPR P
Sbjct: 53 KLTVKSRQSDYFEKQRFGDSSSSQNAEVSS-------PRFYVGHSIYKGKAALTIEPRAP 105
Query: 106 EFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEF 165
EFV+L+SGA KL++EGF++LQFAPAAGVRQYDWSRKQVFSLSVTEIG+LV+LG RESCEF
Sbjct: 106 EFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEF 165
Query: 166 FHDPFKGK-SEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLV 224
FHDPFKGK S+EGKVRKVLKVEPLPDGSG FFNLSVQNKL+N+DES+YIP+T+AE+ VL+
Sbjct: 166 FHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLI 225
Query: 225 SAFN 228
SAFN
Sbjct: 226 SAFN 229
>sp|Q9LL85|WHY1_SOLTU Single-stranded DNA-bindig protein WHY1, chloroplastic OS=Solanum
tuberosum GN=WHY1 PE=1 SV=1
Length = 274
Score = 274 bits (700), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 162/223 (72%), Gaps = 15/223 (6%)
Query: 14 NPKLCPFHSLSNSKGNGFGSISVTESTSIK--------KKKLYVKCRQSEYYEQKSFSAS 65
NP + S S+S F +S + S + L + CR S+Y+E +
Sbjct: 20 NPTKTSYLSFSSSINTIFAPLSSNTTKSFSGLTHKAALPRNLSLTCRHSDYFEPQQ---- 75
Query: 66 PSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVML 125
G +V+VG+SIYKGKAALTVEPR PEF LDSGA KLSREG VML
Sbjct: 76 ---QQQQQQQQPQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVML 132
Query: 126 QFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKV 185
QFAPAAGVRQYDWSRKQVFSLSVTEIGS+++LGA++SCEFFHDP KG+S+EG+VRKVLKV
Sbjct: 133 QFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKV 192
Query: 186 EPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFN 228
EPLPDGSGHFFNLSVQNKLINLDE+IYIPVT+AE+ VLVSAFN
Sbjct: 193 EPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 235
>sp|B2LXS7|WHY1_MAIZE Single-stranded DNA-bindig protein WHY1, chloroplastic OS=Zea mays
GN=WHY1 PE=2 SV=1
Length = 266
Score = 236 bits (602), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 110/177 (62%), Positives = 137/177 (77%), Gaps = 2/177 (1%)
Query: 52 RQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLD 111
R S+Y++ ++ + Y G RV+ +SIYKGKAAL+ +PR P FV LD
Sbjct: 55 RHSDYFDPRAPPPPRGDGGYG--RPPNGAQDGRVFTSYSIYKGKAALSFDPRPPLFVPLD 112
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFK 171
SGA K+++EGFV+LQFAPA RQYDW+RKQVFSLSV EIG+L+ LG +SCEFFHDPFK
Sbjct: 113 SGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFK 172
Query: 172 GKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFN 228
G+SEEGKVRKVLK+EP PDG+G FFNLSVQN+LIN+DESIYIP+T+ E+ V+VS FN
Sbjct: 173 GRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFN 229
>sp|D9J034|WHY2_SOLTU Single-stranded DNA-bindig protein WHY2, mitochondrial OS=Solanum
tuberosum GN=WHY2 PE=1 SV=1
Length = 238
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 104/144 (72%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KGKAAL+ EPR P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 56 RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 115
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G R+S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 116 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 175
Query: 204 LINLDESIYIPVTRAEYTVLVSAF 227
+ ++ +PVT AE+ V+ +AF
Sbjct: 176 NLKTNDRFTVPVTTAEFAVMRTAF 199
>sp|Q8VYF7|WHY2_ARATH Single-stranded DNA-binding protein WHY2, mitochondrial
OS=Arabidopsis thaliana GN=WHY2 PE=2 SV=1
Length = 238
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 106/145 (73%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R++ +SI+KGKAAL+VEP P F +DSG +++ R G +M+ F PA G R+YDW +KQ
Sbjct: 53 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQK 112
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G+++S EFFHDP S G+VRK L V+P DGSG+F +LSV N
Sbjct: 113 FALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNS 172
Query: 204 LINLDESIYIPVTRAEYTVLVSAFN 228
++ ++ +PVT+AE+ V+ +AF+
Sbjct: 173 ILKTNDYFVVPVTKAEFAVMKTAFS 197
>sp|Q56242|UVRA_THET8 UvrABC system protein A OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=uvrA PE=3 SV=2
Length = 952
Score = 34.3 bits (77), Expect = 0.84, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 111 DSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVT--EIGSLVALGARESCEFFHD 168
DS V+ + EGF+ L+ PA G +Y +++V S+ V I + AL RE+ FF
Sbjct: 391 DSEGVREALEGFMSLRPCPACGGTRY---KREVLSVKVAGRNIAEVSALPVREALAFFQG 447
Query: 169 ------PFKGKSEEGKVRKVLK 184
PF+ + +R++++
Sbjct: 448 LEKTLPPFQAQIARPILREIVE 469
>sp|Q9V2Z4|ACDB2_METTE Acetyl-CoA decarbonylase/synthase complex subunit beta 2
OS=Methanosarcina thermophila GN=cdhC2 PE=1 SV=2
Length = 472
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSI--YKGKAALTVEPRGPEFVSLDSGAVKLSREG 121
S+APT+V V + P RV + +I + G+AA V+P GP+F +++ G + ++ G
Sbjct: 194 SFAPTNVCVVS-PDRVSLCGAINWFDGRAAAKVDPEGPQF-AIEKGELLDAKTG 245
>sp|Q8TRZ6|ACDB1_METAC Acetyl-CoA decarbonylase/synthase complex subunit beta 1
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhC1 PE=3 SV=1
Length = 469
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSI--YKGKAALTVEPRGPEF 107
S+APT+V V + P RV + +I + G+AA V+P GP+F
Sbjct: 194 SFAPTNVCVVS-PDRVSLCGAINWFDGRAAAKVDPEGPQF 232
>sp|Q8TJC4|ACDB2_METAC Acetyl-CoA decarbonylase/synthase complex subunit beta 2
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhC2 PE=3 SV=1
Length = 470
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSI--YKGKAALTVEPRGPEF 107
S+APT+V V + P RV + +I + G+AA V+P GP+F
Sbjct: 194 SFAPTNVCVVS-PDRVSLCGAINWFDGRAAAKVDPEGPQF 232
>sp|B1X508|RK3_PAUCH 50S ribosomal protein L3, organellar chromatophore OS=Paulinella
chromatophora GN=rpl3 PE=3 SV=1
Length = 218
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 54 SEYYEQKSFSASP----SNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVS 109
S Y ++ FS P S + P GT P R+Y G + + RG V
Sbjct: 120 SGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKQITTRGLVIVK 179
Query: 110 LDSGAVKLSREGFV------MLQFAPAAGV 133
+D+G L +G V +L PA GV
Sbjct: 180 VDTGHNLLVVKGSVPGKPGSLLNIFPAKGV 209
>sp|Q8PV85|ACDB2_METMA Acetyl-CoA decarbonylase/synthase complex subunit beta 2
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=cdhC2 PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSI--YKGKAALTVEPRGPEF 107
S+APT+V V + P R+ + +I + G+AA V+P GP+F
Sbjct: 195 SFAPTNVCVVS-PDRISLCGAINWFDGRAAAKVDPEGPQF 233
>sp|Q8PZ11|ACDB1_METMA Acetyl-CoA decarbonylase/synthase complex subunit beta 1
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=cdhC1 PE=3 SV=1
Length = 469
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSI--YKGKAALTVEPRGPEF 107
S+APT+V V + P R+ + +I + G+AA V+P GP+F
Sbjct: 194 SFAPTNVCVVS-PDRISLCGAINWFDGRAAAKVDPEGPQF 232
>sp|P72021|ACDB1_METTE Acetyl-CoA decarbonylase/synthase complex subunit beta 1
OS=Methanosarcina thermophila GN=cdhC1 PE=1 SV=3
Length = 469
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSI--YKGKAALTVEPRGPEF 107
S+APT+V V + P R+ + +I + G+AA V+P GP+F
Sbjct: 194 SFAPTNVCVVS-PDRISLCGAINWFDGRAAAKVDPEGPQF 232
>sp|Q0K815|KATG_CUPNH Catalase-peroxidase OS=Cupriavidus necator (strain ATCC 17699 / H16
/ DSM 428 / Stanier 337) GN=katG PE=3 SV=1
Length = 751
Score = 31.6 bits (70), Expect = 4.5, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 25/128 (19%)
Query: 106 EFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEF 165
EF SG K+S ++L A AG+ Q + G R + F
Sbjct: 537 EFNGAQSGGKKISLADLIVL--AGGAGIEQ-----------------AAQKAGHRVTVPF 577
Query: 166 FHDPFKGKSEEGKVRKVLKVEPLPDGSGHF----FNLSVQNKLINLDESIYIPVTRAEYT 221
E+ V+ V +EP+ DG +F +N+ ++ LI D++ + +T E T
Sbjct: 578 TPGRMDASQEQTDVQSVGALEPIADGFRNFLKGKYNIRAEDLLI--DKAQLLTLTAPEMT 635
Query: 222 VLVSAFNV 229
VL+ V
Sbjct: 636 VLIGGLRV 643
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,513,986
Number of Sequences: 539616
Number of extensions: 3276565
Number of successful extensions: 7850
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7841
Number of HSP's gapped (non-prelim): 18
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)