Query 027008
Match_columns 229
No_of_seqs 53 out of 55
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 05:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3a_A PBF-2, P24: plant trans 100.0 4.8E-74 1.6E-78 501.6 16.3 175 48-229 8-182 (227)
2 3r9z_A WHY2 protein; stwhy2, s 100.0 2.8E-71 9.6E-76 470.3 14.0 153 77-229 3-155 (178)
3 1aoc_A Coagulogen; coagulation 70.2 3.2 0.00011 34.7 3.3 53 85-144 77-129 (175)
4 1vq8_1 50S ribosomal protein L 30.1 16 0.00055 26.0 0.9 13 129-141 42-54 (57)
5 3qwn_A Hypothetical NIGD-like 24.1 1.5E+02 0.0053 25.1 6.1 76 120-202 109-189 (214)
6 3j21_e 50S ribosomal protein L 23.0 26 0.00089 25.3 0.9 14 129-142 42-55 (62)
7 3iz5_l 60S ribosomal protein L 17.3 41 0.0014 26.1 1.0 14 129-142 40-53 (94)
8 3jqw_A COLH protein, collagena 15.1 1.4E+02 0.0048 23.0 3.5 53 136-188 32-95 (121)
9 2zkr_2 60S ribosomal protein L 13.7 62 0.0021 25.1 1.2 13 129-141 40-52 (97)
10 3pw3_A Aminopeptidase C; bleom 11.4 1.8E+02 0.0062 26.7 3.7 49 133-190 168-216 (383)
No 1
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=4.8e-74 Score=501.60 Aligned_cols=175 Identities=73% Similarity=1.148 Sum_probs=147.0
Q ss_pred EEeeccccccccCCCCCCCCCCCCCCCCccCCCCCCeeeeeeeeeeCceeEEEeecCCceeecCCcceEEeeeceEEEEe
Q 027008 48 YVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQF 127 (229)
Q Consensus 48 ~~~~~~s~~f~~~~~~~~~~~~~~~~~~~~~~~~~~RVy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeF 127 (229)
..+|||+||||+|++++++.+ +| ++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~----~~---a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEF 80 (227)
T 1l3a_A 8 QQMGRGSDYFEPQQQQQQQQQ----QP---QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQF 80 (227)
T ss_dssp ----------------------------------CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEE
T ss_pred ccccchhhhccccCCCCCccC----CC---CCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEE
Confidence 468999999999998654321 11 58889999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCccceEEeeehhhhhhhhhcCccccceeeecCCCCCCCCCceeEEEEEEeCCCCCcceEEEEeeeccccC
Q 027008 128 APAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINL 207 (229)
Q Consensus 128 APA~G~RqYDW~kKq~FsLS~tEvG~LisLg~~~s~efFHDP~~g~S~~G~vrK~LkVeP~pDgSG~ffnLsV~n~~~n~ 207 (229)
||++|+|||||+|||+|+||++|||+||+|+++++|||||||+||+|++|+|+|+|+|||+|||+|+||||+|+|++.+.
T Consensus 81 APa~g~RqYDW~kKq~FsLS~tEvG~LLsl~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~ 160 (227)
T 1l3a_A 81 APAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINL 160 (227)
T ss_dssp EEBCSTTCBCGGGCEEEEECHHHHHHHHTCCTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTE
T ss_pred eeccCccccccccceEEEeCHHHHhHHHhcccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeechhhHHHHhhhhcC
Q 027008 208 DESIYIPVTRAEYTVLVSAFNV 229 (229)
Q Consensus 208 de~~~iPVt~aEfaVl~S~f~f 229 (229)
|++|+||||+|||+||+++|+|
T Consensus 161 de~~~VpVs~gEfaV~rsl~~f 182 (227)
T 1l3a_A 161 DENIYIPVTKAEFAVLVSAFNF 182 (227)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHH
T ss_pred cceEEEechHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 2
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=2.8e-71 Score=470.26 Aligned_cols=153 Identities=48% Similarity=0.845 Sum_probs=140.1
Q ss_pred cCCCCCCeeeeeeeeeeCceeEEEeecCCceeecCCcceEEeeeceEEEEeecccccccccCccceEEeeehhhhhhhhh
Q 027008 77 AVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVA 156 (229)
Q Consensus 77 ~~~~~~~RVy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPA~G~RqYDW~kKq~FsLS~tEvG~Lis 156 (229)
.+|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+||||||||+|+|||||+|||+|+||++|||+||+
T Consensus 3 ~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Lls 82 (178)
T 3r9z_A 3 DAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLIS 82 (178)
T ss_dssp ----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHHT
T ss_pred CCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccceeeecCCCCCCCCCceeEEEEEEeCCCCCcceEEEEeeeccccCCcceeeeechhhHHHHhhhhcC
Q 027008 157 LGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNV 229 (229)
Q Consensus 157 Lg~~~s~efFHDP~~g~S~~G~vrK~LkVeP~pDgSG~ffnLsV~n~~~n~de~~~iPVt~aEfaVl~S~f~f 229 (229)
|+++++|||||||+||+|++|+|+|+|||||++||||+||||||+|++.+++++++||||+|||+||+++|+|
T Consensus 83 l~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~~~~~~vpvt~gEfav~~~~~~~ 155 (178)
T 3r9z_A 83 MGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSF 155 (178)
T ss_dssp CCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred hcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccccccEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=70.20 E-value=3.2 Score=34.71 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=44.3
Q ss_pred eeeeeeeeeCceeEEEeecCCceeecCCcceEEeeeceEEEEeecccccccccCccceEE
Q 027008 85 VYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVF 144 (229)
Q Consensus 85 Vy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPA~G~RqYDW~kKq~F 144 (229)
-|.+|.-||+..-.+.+..-|.|.---+|.+++ +-=||.+|-||--|+.|--|
T Consensus 77 nf~pf~hf~secpvstrdcepvfgyt~a~efrv-------ivqapragfrqcvwqhkcry 129 (175)
T 1aoc_A 77 NFPPFTHFKSECPVSTRDCEPVFGYTVAGEFRV-------IVQAPRAGFRQCVWQHKCRF 129 (175)
T ss_dssp GSTTCCCCSSBCCEEEECCCCSEEEBTTCCEEE-------ECCBTTTTBCBCCCEEEETT
T ss_pred cCCCcccccccCCcccccccccccceecceEEE-------EEeCchhhhHHHHHhhhccc
Confidence 356788899999999999999999888887754 44589999999999988543
No 4
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=30.15 E-value=16 Score=26.02 Aligned_cols=13 Identities=38% Similarity=0.854 Sum_probs=10.9
Q ss_pred cccccccccCccc
Q 027008 129 PAAGVRQYDWSRK 141 (229)
Q Consensus 129 PA~G~RqYDW~kK 141 (229)
|+.--|+|+|+.|
T Consensus 42 pa~r~R~ynWs~K 54 (57)
T 1vq8_1 42 KSAKRRDYEWQSK 54 (57)
T ss_dssp TCSSCCCCGGGSC
T ss_pred chhhhcCcchhhh
Confidence 6666799999987
No 5
>3qwn_A Hypothetical NIGD-like protein; SH3-like barrel fold, structural genomics, joint center for structural genomics, JCSG; 2.42A {Bacteroides caccae}
Probab=24.08 E-value=1.5e+02 Score=25.11 Aligned_cols=76 Identities=8% Similarity=0.161 Sum_probs=47.2
Q ss_pred eceEEEEeecccccccccCccceEEeeehhhhhhhhhcCccccceeeecCCCCC-CCCCceeEEEEEEeCCCCC----cc
Q 027008 120 EGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGK-SEEGKVRKVLKVEPLPDGS----GH 194 (229)
Q Consensus 120 ~G~vlLeFAPA~G~RqYDW~kKq~FsLS~tEvG~LisLg~~~s~efFHDP~~g~-S~~G~vrK~LkVeP~pDgS----G~ 194 (229)
.|+|=|+|.--.+ + .+|+.|.|=..++ .. +-+-.--+||+|+-+--. .-.+...=++.+..+++.. |-
T Consensus 109 ~~YLNl~f~~k~~----~-~~kH~i~lV~~~~-~~-~~~~~~~LeLrHna~gD~~~y~~~gyvSfpL~~l~~~~~~~~~~ 181 (214)
T 3qwn_A 109 RGYLNMILNLKVN----G-GKQHVFGIVEDLS-EF-ETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKI 181 (214)
T ss_dssp TTEEEEEEEEEEC----S-SSCCEEEEEEECT-TH-HHHCEEEEEEEEECTTCCSCEEEEEEEEEECGGGCCTTSTTCCE
T ss_pred CCEEEEEEEEccC----C-CccEEEEEEeccc-cc-CCCcEEEEEEEECCCCCCccceecEEEEEEhHHCccccccCCCc
Confidence 6788788865543 3 6799999988877 11 111223799999976532 2234455566777776533 34
Q ss_pred eEEEEeee
Q 027008 195 FFNLSVQN 202 (229)
Q Consensus 195 ffnLsV~n 202 (229)
-+.|+++.
T Consensus 182 ~i~l~~nT 189 (214)
T 3qwn_A 182 TIKFKYYT 189 (214)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEc
Confidence 56777765
No 6
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.05 E-value=26 Score=25.34 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=10.6
Q ss_pred cccccccccCccce
Q 027008 129 PAAGVRQYDWSRKQ 142 (229)
Q Consensus 129 PA~G~RqYDW~kKq 142 (229)
|+.--|+|+|+.|-
T Consensus 42 ps~r~R~YnWs~Ka 55 (62)
T 3j21_e 42 RSRRLRKYRWSKKW 55 (62)
T ss_dssp TCSSCCCCTTCSHH
T ss_pred hhhhhccccHHHHh
Confidence 55556899999873
No 7
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=17.33 E-value=41 Score=26.09 Aligned_cols=14 Identities=57% Similarity=1.144 Sum_probs=11.2
Q ss_pred cccccccccCccce
Q 027008 129 PAAGVRQYDWSRKQ 142 (229)
Q Consensus 129 PA~G~RqYDW~kKq 142 (229)
|+.--|+|+|+.|-
T Consensus 40 ps~r~R~YnWs~Ka 53 (94)
T 3iz5_l 40 PAARIRKYNWSVKA 53 (94)
T ss_dssp SCSSCCCCSSSCHH
T ss_pred chhhcccccHHHhh
Confidence 66667999999874
No 8
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=15.13 E-value=1.4e+02 Score=23.01 Aligned_cols=53 Identities=9% Similarity=0.226 Sum_probs=32.0
Q ss_pred ccCcc-ceEEeeehhhhhhh-hhcCcc----ccceeeecCCC----CCCCCCceeEEEEE-EeC
Q 027008 136 YDWSR-KQVFSLSVTEIGSL-VALGAR----ESCEFFHDPFK----GKSEEGKVRKVLKV-EPL 188 (229)
Q Consensus 136 YDW~k-Kq~FsLS~tEvG~L-isLg~~----~s~efFHDP~~----g~S~~G~vrK~LkV-eP~ 188 (229)
.+|++ +-.|.+.+.+-|.| |++... -.+.+||+-+. +..++.++...+++ +|-
T Consensus 32 l~~~dd~D~y~F~V~~~g~v~I~l~~~~~~~~~w~ly~~~~nyv~y~~~~gn~~~~~~~~~~pG 95 (121)
T 3jqw_A 32 IENTSDQDYFYFDVITPGEVKIDINKLGYGGATWVVYDENNNAVSYATDDGQNLSGKFKADKPG 95 (121)
T ss_dssp ECSTTCCEEEEEEESSCEEEEEEEEECSSSEEEEEEECTTSCEEEECEECSSEEEEEEEECSCE
T ss_pred eCCcCCeeEEEEEeCCCCeEEEEEEecCCCcEEEEEEeCCCCeEEEeccCCCEEEEEEEeCCCe
Confidence 45555 66777777777777 554332 25667776622 33445666677777 664
No 9
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=13.74 E-value=62 Score=25.12 Aligned_cols=13 Identities=54% Similarity=1.078 Sum_probs=10.4
Q ss_pred cccccccccCccc
Q 027008 129 PAAGVRQYDWSRK 141 (229)
Q Consensus 129 PA~G~RqYDW~kK 141 (229)
|+.--|.|+|+.|
T Consensus 40 pa~k~R~ynWs~K 52 (97)
T 2zkr_2 40 PAKRKRKYNWSAK 52 (97)
T ss_dssp TTSSCCCCSSSSC
T ss_pred chHhccCcchhhh
Confidence 4555799999988
No 10
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=11.43 E-value=1.8e+02 Score=26.74 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=34.8
Q ss_pred cccccCccceEEeeehhhhhhhhhcCccccceeeecCCCCCCCCCceeEEEEEEeCCC
Q 027008 133 VRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPD 190 (229)
Q Consensus 133 ~RqYDW~kKq~FsLS~tEvG~LisLg~~~s~efFHDP~~g~S~~G~vrK~LkVeP~pD 190 (229)
+.+++|+.| .++|.|...=+-+...+=+.+.|||.. .-.|.+.||-...
T Consensus 168 P~~F~~~gk---~~TP~~F~~~v~~~~~dyV~l~n~p~~------py~~~y~ve~~~N 216 (383)
T 3pw3_A 168 PEKFTYKGK---EYTPKSFFESTGLKASDYVSLTSYTHH------PFYTQFPLEIQDN 216 (383)
T ss_dssp CSSEEETTE---EECHHHHHHHHTCCGGGEEEEECCSSS------CTTCEEECCCTTC
T ss_pred CceEEecCC---CcCHHHHHHHhCCCccceEEEeeCCCC------ccCceEEEecCCC
Confidence 678999988 568988886555667788999999953 2234555555443
Done!