BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027009
         (229 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase
           OS=Dictyostelium discoideum GN=agtA PE=1 SV=1
          Length = 648

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 77  WRDYTLSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYA 132
           +RD TL+    F    + K+  I+ C   + Y  F     I   R   +D ++  +    
Sbjct: 22  FRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAEFKGIECQRFS-RDDIINSSTSST 80

Query: 133 TLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVD 192
            L+  N       +       S+ A  +G  GF    + +P  +L +L+ GYNV++ D D
Sbjct: 81  QLFHDNNTNDNKGIY------SENAESYGDIGFRAICNEKPLVVLDVLKKGYNVLWTDTD 134

Query: 193 MVWLKDPFPYLQGD--HDVYFTDD 214
           +VW +DPF +   D   +  FT+D
Sbjct: 135 IVWKRDPFIHFYQDINQENQFTND 158


>sp|Q3E6Y3|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana
           GN=At1g28695 PE=2 SV=1
          Length = 329

 Score = 43.9 bits (102), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 15/150 (10%)

Query: 84  QAASFVA---KNGTIIVCAVSQPYLP-----------FLNNWLISISRQKHQDQVLVIAE 129
           +AA + A    N T+I+  V++ Y+            FL ++          D ++V+A 
Sbjct: 46  EAALYTAAAGNNKTVIITMVNKAYVKEVGRGSTMLDLFLESFWEGEGTLPLLDHLMVVAV 105

Query: 130 DYATLYKVN-GRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMY 188
           D     +    R   + +      D +    F S+ F     RR   +L +L  GYNV++
Sbjct: 106 DQTAYDRCRFKRLHCYKMETEDGVDLEGEKVFMSKDFIEMMWRRTRLILDVLRRGYNVIF 165

Query: 189 NDVDMVWLKDPFPYLQGDHDVYFTDDMAAV 218
            D D++WL+ P   L    D+  + D   V
Sbjct: 166 TDTDVMWLRSPLSRLNMSLDMQISVDRINV 195


>sp|P71379|Y1343_HAEIN Putative csd-like protein HI_1343 OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1343 PE=5 SV=1
          Length = 238

 Score = 34.7 bits (78), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 53  LGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWL 112
           +  +LPW  +  F    +  S+A    + + Q A+FV  + T   C      LP L+NWL
Sbjct: 15  INTMLPWKSSKKF----SNHSIASTSKWLVHQVANFVTWHETAKKCGAKIRVLPILDNWL 70

Query: 113 I 113
           I
Sbjct: 71  I 71


>sp|P79777|BRAC_CHICK Brachyury protein OS=Gallus gallus GN=T PE=2 SV=1
          Length = 433

 Score = 33.9 bits (76), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 97  VCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRW--PGHAVLVPPA-PD 153
           + A+   Y PF   +L +  R  H+D +    ++  + Y   G W  PG   L PPA P 
Sbjct: 201 ITALKIKYNPFAKAFLDAKERNDHKDMMEEAGDNQQSGYSQLGSWLIPGAGALCPPANPH 260

Query: 154 SQ 155
           SQ
Sbjct: 261 SQ 262


>sp|Q8R6G8|TRMB_FUSNN Bifunctional glycosyltransferase/methyltransferase OS=Fusobacterium
           nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
           101130 / JCM 8532 / LMG 13131) GN=trmB PE=3 SV=1
          Length = 640

 Score = 33.5 bits (75), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 187 MYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           ++  +D +  KD   Y + DHDVY+ D +  V+TL
Sbjct: 559 LFKTLDKIMKKDGMLYFKTDHDVYYNDVLELVKTL 593


>sp|Q9FJS2|HDG5_ARATH Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana
           GN=HDG5 PE=2 SV=3
          Length = 826

 Score = 31.2 bits (69), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 95  IIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKV----NGRWPGHAV 146
           +++CAVS  +LPF ++ +  + R +H   +L +  +  + ++V    NG  PG+ +
Sbjct: 629 VVLCAVSTTWLPFSHHQVFDLIRDQHHQSLLEVLFNGNSPHEVAHIANGSHPGNCI 684


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,249,811
Number of Sequences: 539616
Number of extensions: 3566554
Number of successful extensions: 9926
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9922
Number of HSP's gapped (non-prelim): 11
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)