Query 027009
Match_columns 229
No_of_seqs 133 out of 323
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03407 Nucleotid_trans: Nucl 99.8 6.1E-21 1.3E-25 162.5 11.1 102 120-221 2-105 (212)
2 cd04194 GT8_A4GalT_like A4GalT 93.2 0.39 8.5E-06 41.6 7.6 118 96-216 3-132 (248)
3 cd02537 GT8_Glycogenin Glycoge 92.8 1.1 2.5E-05 39.1 9.8 113 97-214 4-121 (240)
4 PLN00176 galactinol synthase 92.7 1.1 2.3E-05 42.0 10.1 119 91-215 20-146 (333)
5 cd08579 GDPD_memb_like Glycero 87.9 13 0.00028 31.7 11.9 67 78-144 81-150 (220)
6 PF01501 Glyco_transf_8: Glyco 87.4 2.1 4.5E-05 36.0 6.6 107 96-204 2-120 (250)
7 cd00505 Glyco_transf_8 Members 80.8 14 0.00031 32.0 9.2 118 95-215 3-131 (246)
8 cd08563 GDPD_TtGDE_like Glycer 80.5 36 0.00078 29.1 12.0 66 78-143 87-155 (230)
9 PF11051 Mannosyl_trans3: Mann 78.8 6.5 0.00014 35.2 6.5 99 96-205 4-113 (271)
10 cd08573 GDPD_GDE1 Glycerophosp 77.9 48 0.001 29.3 11.7 65 78-143 87-153 (258)
11 cd08580 GDPD_Rv2277c_like Glyc 74.7 47 0.001 29.8 10.8 64 78-142 93-156 (263)
12 cd08582 GDPD_like_2 Glyceropho 74.4 55 0.0012 28.0 11.1 128 78-213 85-229 (233)
13 cd08575 GDPD_GDE4_like Glycero 72.7 68 0.0015 28.3 11.9 65 78-143 96-160 (264)
14 cd08567 GDPD_SpGDE_like Glycer 72.0 57 0.0012 28.2 10.5 108 77-188 107-236 (263)
15 cd08583 PI-PLCc_GDPD_SF_unchar 65.8 85 0.0018 27.0 10.2 66 78-143 84-156 (237)
16 COG1442 RfaJ Lipopolysaccharid 65.1 14 0.0003 34.6 5.4 106 96-204 5-119 (325)
17 cd08612 GDPD_GDE4 Glycerophosp 62.9 1.2E+02 0.0025 27.4 12.1 65 78-144 121-185 (300)
18 PF03414 Glyco_transf_6: Glyco 61.5 26 0.00057 33.0 6.5 106 83-200 87-205 (337)
19 cd02515 Glyco_transf_6 Glycosy 59.6 49 0.0011 30.3 7.7 104 84-198 23-139 (271)
20 cd08601 GDPD_SaGlpQ_like Glyce 59.2 1.2E+02 0.0026 26.3 10.8 67 77-143 96-169 (256)
21 cd08564 GDPD_GsGDE_like Glycer 55.0 1.5E+02 0.0032 26.0 11.9 65 78-143 106-171 (265)
22 cd08574 GDPD_GDE_2_3_6 Glycero 52.5 1.6E+02 0.0035 25.8 11.1 66 78-144 112-183 (252)
23 cd08565 GDPD_pAtGDE_like Glyce 52.5 94 0.002 27.0 8.2 65 78-143 80-149 (235)
24 cd08562 GDPD_EcUgpQ_like Glyce 48.4 1.7E+02 0.0036 24.7 11.9 65 79-143 86-154 (229)
25 cd08556 GDPD Glycerophosphodie 45.0 1.3E+02 0.0028 24.1 7.5 105 79-188 48-165 (189)
26 cd06431 GT8_LARGE_C LARGE cata 44.6 1E+02 0.0022 27.9 7.4 110 94-205 3-120 (280)
27 TIGR03472 HpnI hopanoid biosyn 42.8 1.1E+02 0.0024 28.2 7.6 93 94-203 44-147 (373)
28 cd06914 GT8_GNT1 GNT1 is a fun 42.8 86 0.0019 28.6 6.6 96 100-205 8-114 (278)
29 cd05530 POLBc_B1 DNA polymeras 42.2 36 0.00078 32.3 4.2 33 167-199 147-180 (372)
30 cd05538 POLBc_Pol_II_B DNA pol 42.2 37 0.00079 31.8 4.2 20 181-200 128-147 (347)
31 cd08572 GDPD_GDE5_like Glycero 42.1 2.6E+02 0.0057 25.2 11.2 66 78-143 122-201 (293)
32 PF00136 DNA_pol_B: DNA polyme 41.7 36 0.00079 32.6 4.3 33 168-200 191-226 (466)
33 PRK15327 type III secretion sy 39.2 1.4E+02 0.003 28.9 7.6 63 79-145 172-246 (393)
34 PRK09454 ugpQ cytoplasmic glyc 38.9 2.6E+02 0.0057 24.3 11.0 134 78-220 94-244 (249)
35 cd06432 GT8_HUGT1_C_like The C 38.5 2.3E+02 0.0051 24.9 8.6 30 175-204 87-117 (248)
36 COG1438 ArgR Arginine represso 37.7 93 0.002 26.0 5.5 59 81-139 80-144 (150)
37 PRK14762 membrane protein; Pro 37.3 44 0.00096 19.9 2.5 12 45-56 12-23 (27)
38 cd08605 GDPD_GDE5_like_1_plant 36.6 2.3E+02 0.005 25.0 8.3 66 78-143 119-192 (282)
39 PF00535 Glycos_transf_2: Glyc 36.5 1.8E+02 0.0038 21.7 6.7 91 94-203 1-99 (169)
40 cd05531 POLBc_B2 DNA polymeras 36.2 45 0.00098 31.2 3.9 24 175-198 137-161 (352)
41 cd08566 GDPD_AtGDE_like Glycer 35.4 2.1E+02 0.0044 24.9 7.7 63 78-144 86-148 (240)
42 PHA03164 hypothetical protein; 35.4 30 0.00066 26.0 2.0 53 4-56 25-81 (88)
43 cd08561 GDPD_cytoplasmic_ScUgp 34.5 3E+02 0.0065 23.7 11.5 65 78-144 93-157 (249)
44 cd08606 GDPD_YPL110cp_fungi Gl 34.0 3.3E+02 0.0072 24.0 11.0 66 78-143 107-187 (286)
45 cd00145 POLBc DNA polymerase t 33.5 57 0.0012 30.0 4.0 28 173-200 142-170 (323)
46 PF09879 DUF2106: Predicted me 33.4 58 0.0012 27.3 3.6 78 37-116 15-104 (153)
47 cd05536 POLBc_B3 DNA polymeras 32.3 56 0.0012 30.7 3.8 20 181-200 151-170 (371)
48 KOG1110 Putative steroid membr 31.5 1.8E+02 0.0038 25.3 6.3 63 40-103 11-82 (183)
49 cd04195 GT2_AmsE_like GT2_AmsE 31.4 1.9E+02 0.0042 23.0 6.5 26 94-119 1-26 (201)
50 PF13704 Glyco_tranf_2_4: Glyc 31.1 2E+02 0.0044 20.6 8.8 82 106-200 5-89 (97)
51 cd05537 POLBc_Pol_II DNA polym 30.9 68 0.0015 30.3 4.2 20 181-200 140-159 (371)
52 cd08568 GDPD_TmGDE_like Glycer 30.3 2.8E+02 0.006 23.6 7.6 63 78-143 78-140 (226)
53 TIGR02554 PrgH type III secret 30.1 4.1E+02 0.0089 25.6 9.3 62 79-144 167-240 (389)
54 KOG3916 UDP-Gal:glucosylcerami 29.7 47 0.001 31.6 2.8 39 159-197 191-230 (372)
55 cd05532 POLBc_alpha DNA polyme 29.6 73 0.0016 30.3 4.2 28 173-200 145-173 (400)
56 KOG4753 Predicted membrane pro 27.8 96 0.0021 25.2 3.9 30 31-60 45-74 (124)
57 cd08609 GDPD_GDE3 Glycerophosp 27.8 4.9E+02 0.011 24.0 11.4 113 78-191 137-274 (315)
58 TIGR00730 conserved hypothetic 27.7 2.2E+02 0.0048 24.0 6.4 52 80-132 108-169 (178)
59 cd06430 GT8_like_2 GT8_like_2 25.0 5.6E+02 0.012 23.8 9.0 28 176-204 90-118 (304)
60 PF07801 DUF1647: Protein of u 25.0 1.7E+02 0.0037 24.2 5.0 56 91-146 59-116 (142)
61 PF02863 Arg_repressor_C: Argi 24.9 1.2E+02 0.0026 21.6 3.7 57 83-139 3-65 (70)
62 cd06423 CESA_like CESA_like is 24.6 1.8E+02 0.0038 21.6 4.8 22 182-203 78-99 (180)
63 PF04677 CwfJ_C_1: Protein sim 24.2 98 0.0021 24.6 3.4 66 125-191 26-93 (121)
64 TIGR00725 conserved hypothetic 22.8 2.1E+02 0.0045 23.6 5.2 51 80-133 103-153 (159)
65 PHA02523 43B DNA polymerase su 21.8 1.3E+02 0.0028 29.0 4.1 36 163-198 78-116 (391)
66 cd02526 GT2_RfbF_like RfbF is 21.6 3.9E+02 0.0085 21.8 6.8 23 181-203 73-96 (237)
67 cd04185 GT_2_like_b Subfamily 21.5 3E+02 0.0066 22.0 6.0 23 181-203 77-100 (202)
68 cd08570 GDPD_YPL206cp_fungi Gl 21.3 5.2E+02 0.011 22.0 10.2 66 78-143 81-155 (234)
69 PLN02206 UDP-glucuronate decar 21.2 2.8E+02 0.006 26.6 6.4 56 1-57 1-59 (442)
70 PRK05761 DNA polymerase I; Rev 21.1 1.3E+02 0.0029 31.3 4.5 20 181-200 557-576 (787)
71 PF02484 Rhabdo_NV: Rhabdoviru 21.1 1.1E+02 0.0023 23.9 2.9 22 178-199 20-41 (111)
72 PRK11915 glycerol-3-phosphate 20.9 6.2E+02 0.013 26.0 9.0 90 85-189 107-200 (621)
73 cd08560 GDPD_EcGlpQ_like_1 Gly 20.9 4.6E+02 0.01 24.7 7.7 66 77-142 148-225 (356)
74 PHA03334 putative DNA polymera 20.7 1.2E+02 0.0027 33.9 4.2 39 165-203 784-824 (1545)
75 cd02071 MM_CoA_mut_B12_BD meth 20.4 2.6E+02 0.0057 21.6 5.1 40 81-120 38-79 (122)
No 1
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=99.85 E-value=6.1e-21 Score=162.52 Aligned_cols=102 Identities=34% Similarity=0.579 Sum_probs=89.6
Q ss_pred CCCcEEEEEecHHHHHHHhcCCCceeEecCC-CCCCcccccccchhHHHHHhhhhHHHHHHHHcCCcEEEeecceeeecC
Q 027009 120 HQDQVLVIAEDYATLYKVNGRWPGHAVLVPP-APDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKD 198 (229)
Q Consensus 120 ~~~nvLVvAlD~~t~~~~~~~~pg~~vl~~~-~~d~~~~~~~gs~~F~~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrD 198 (229)
+++|++|+|+|+++++.|++.++.|+.+... .....+...+|++.|.+++|.|+.+++++|++||+|+++|+|+||+||
T Consensus 2 ~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~d 81 (212)
T PF03407_consen 2 LIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRD 81 (212)
T ss_pred ccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecC
Confidence 5799999999999999999887776665433 233456789999999999999999999999999999999999999999
Q ss_pred Ccccc-CCCCceEEeccCcccCCC
Q 027009 199 PFPYL-QGDHDVYFTDDMAAVRTL 221 (229)
Q Consensus 199 P~p~f-~~~aDi~~~sD~~~~~p~ 221 (229)
|+++| .+++|+++|+|+..+...
T Consensus 82 p~~~~~~~~~Di~~~~d~~~~~~~ 105 (212)
T PF03407_consen 82 PLPYFENPDADILFSSDGWDGTNS 105 (212)
T ss_pred cHHhhccCCCceEEecCCCcccch
Confidence 99999 789999999998876544
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=93.25 E-value=0.39 Score=41.61 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=67.9
Q ss_pred EEEEeCcchHHHHHHHHHHhhhccC--CCcEEEEEec--HHHHHHHhcCCC--ceeE-ecC-CCCCCcccccccchhHHH
Q 027009 96 IVCAVSQPYLPFLNNWLISISRQKH--QDQVLVIAED--YATLYKVNGRWP--GHAV-LVP-PAPDSQTAHKFGSQGFFN 167 (229)
Q Consensus 96 IVt~~N~ay~dfl~Nwl~sl~r~g~--~~nvLVvAlD--~~t~~~~~~~~p--g~~v-l~~-~~~d~~~~~~~gs~~F~~ 167 (229)
|+.++|..|+.-+..-+.|+.+..- .-++.|++.| ++..+.+++... ++.+ +.+ +...... .......|..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~-~~~~~~~~~~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKF-FPATTDHISY 81 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhc-CCcccccccH
Confidence 6888999999988888888877432 3456666654 455666654211 2221 111 0000000 0002223334
Q ss_pred HHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccCC---CCceEEeccCc
Q 027009 168 FTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMA 216 (229)
Q Consensus 168 m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~~---~aDi~~~sD~~ 216 (229)
++-.|.. +-.++. +|+ |||.|+|++-++|.-+.+.. +.-+.+..|+.
T Consensus 82 ~~y~rl~-l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~ 132 (248)
T cd04194 82 ATYYRLL-IPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPF 132 (248)
T ss_pred HHHHHHH-HHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEeccc
Confidence 4444433 345555 675 99999999999999988875 33344455544
No 3
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=92.77 E-value=1.1 Score=39.08 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=65.8
Q ss_pred EEE-eCcchHHHHHHHHHHhhhccCCCcEEEEEec---HHHHHHHhcCCCceeEecCCCCCCcccccccchhHHHHHhhh
Q 027009 97 VCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRR 172 (229)
Q Consensus 97 Vt~-~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD---~~t~~~~~~~~pg~~vl~~~~~d~~~~~~~gs~~F~~m~~~K 172 (229)
||+ +|.+|+.-+.--+.|+++.+-..+++|+..+ ++..+.+++........ +. .+...........+.+-++.|
T Consensus 4 ~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v-~~-i~~~~~~~~~~~~~~~~~~~k 81 (240)
T cd02537 4 VTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREV-EP-IDPPDSANLLKRPRFKDTYTK 81 (240)
T ss_pred EEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEec-Cc-cCCcchhhhccchHHHHHhHH
Confidence 444 5669999888888999887544566555433 44556666542211111 11 111111111223455667777
Q ss_pred hHHHHHHHHcCC-cEEEeecceeeecCCccccCCCCceEEecc
Q 027009 173 PCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDD 214 (229)
Q Consensus 173 ~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~aDi~~~sD 214 (229)
..+.. + .+| .|||.|+|++-++|.-+.|..+..+....|
T Consensus 82 l~~~~-l--~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d 121 (240)
T cd02537 82 LRLWN-L--TEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPD 121 (240)
T ss_pred HHhcc-c--cccceEEEEeCCeeEccCHHHHhCCCCceeeecc
Confidence 55544 2 256 499999999999999998876333433333
No 4
>PLN00176 galactinol synthase
Probab=92.71 E-value=1.1 Score=41.95 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=72.7
Q ss_pred cCCeEEEE--EeCcchHHHHHHHHHHhhhccCCCcEEEEEecH---HHHHHHhcCCCceeEec-CCCCCCcccccccchh
Q 027009 91 KNGTIIVC--AVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNGRWPGHAVLV-PPAPDSQTAHKFGSQG 164 (229)
Q Consensus 91 ~n~tVIVt--~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~---~t~~~~~~~~pg~~vl~-~~~~d~~~~~~~gs~~ 164 (229)
..+...|| ++|..|..=+.-...|+++.+-...++|+..++ +..+.+++. ||.+.. ...........+.. .
T Consensus 20 ~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~--g~~V~~V~~i~~~~~~~~~~~-~ 96 (333)
T PLN00176 20 PAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQ--GCIVREIEPVYPPENQTQFAM-A 96 (333)
T ss_pred cCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEecccCCccccccccc-c
Confidence 45677777 467899999999999999987777777777665 345555543 343321 11111111122322 2
Q ss_pred HHHHHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCCCCc-eEEeccC
Q 027009 165 FFNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHD-VYFTDDM 215 (229)
Q Consensus 165 F~~m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~aD-i~~~sD~ 215 (229)
+..+.+.|.++.. +. .| .|+|.|+|++-++|--+.|.-..+ +..-.|+
T Consensus 97 ~~~i~~tKl~iw~-l~--~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc 146 (333)
T PLN00176 97 YYVINYSKLRIWE-FV--EYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDC 146 (333)
T ss_pred hhhhhhhhhhhcc-cc--ccceEEEecCCEEeecChHHHhcCCCcceEEEecc
Confidence 3445555666433 22 36 499999999999999888875322 4444454
No 5
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=87.86 E-value=13 Score=31.65 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCchHHHHHHhhccCC-eEEEEEeCc--chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNG-TIIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~-tVIVt~~N~--ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+.++|+|+++.....+ .+.+=.=.. ....++..-+.-+++.+..++++|...|.+..+.+++..|..
T Consensus 81 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~ 150 (220)
T cd08579 81 KIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKI 150 (220)
T ss_pred cCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCC
Confidence 4679999999876533 344333222 234466666666777777789999999999999998766763
No 6
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=87.37 E-value=2.1 Score=35.98 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=59.5
Q ss_pred EEEEeCcchHHHHHHHHHHhhhccCC-CcEEEE-Eec---HHHHHHHhcCCCc---ee-EecCCCCCC--cccccccchh
Q 027009 96 IVCAVSQPYLPFLNNWLISISRQKHQ-DQVLVI-AED---YATLYKVNGRWPG---HA-VLVPPAPDS--QTAHKFGSQG 164 (229)
Q Consensus 96 IVt~~N~ay~dfl~Nwl~sl~r~g~~-~nvLVv-AlD---~~t~~~~~~~~pg---~~-vl~~~~~d~--~~~~~~gs~~ 164 (229)
|+.++|..|+.-+..-+.|+.+.... .++.+. ..| ++..+.+++.... .. ......... ..........
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 78889999999999999999886432 344222 222 2344444432111 11 111110000 0112223334
Q ss_pred HHHHHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccC
Q 027009 165 FFNFTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQ 204 (229)
Q Consensus 165 F~~m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~ 204 (229)
+..++..|..+-. ++ .+|+ |||.|+|++-++|.-+.|.
T Consensus 82 ~~~~~~~rl~i~~-ll-~~~drilyLD~D~lv~~dl~~lf~ 120 (250)
T PF01501_consen 82 FSPATFARLFIPD-LL-PDYDRILYLDADTLVLGDLDELFD 120 (250)
T ss_dssp GGGGGGGGGGHHH-HS-TTSSEEEEE-TTEEESS-SHHHHC
T ss_pred ccHHHHHHhhhHH-HH-hhcCeEEEEcCCeeeecChhhhhc
Confidence 5566667764444 44 5665 9999999999999998887
No 7
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=80.85 E-value=14 Score=32.00 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=64.0
Q ss_pred EEEEEeCcchHHHHHHHHHHhhhccC-CCcEEEEEec--HHHHHHHhcCC--Ccee-EecC-CCCCCcccccccchhHHH
Q 027009 95 IIVCAVSQPYLPFLNNWLISISRQKH-QDQVLVIAED--YATLYKVNGRW--PGHA-VLVP-PAPDSQTAHKFGSQGFFN 167 (229)
Q Consensus 95 VIVt~~N~ay~dfl~Nwl~sl~r~g~-~~nvLVvAlD--~~t~~~~~~~~--pg~~-vl~~-~~~d~~~~~~~gs~~F~~ 167 (229)
+++++++..|+..+.--+.|+.+... .-++.|+..| ++..+.+.+.. .++. .+.+ +...... .....+.+..
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~ 81 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD-SEHLKRPIKI 81 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-hhhhcCcccc
Confidence 45666777999988888888876532 3456666544 23344444321 1222 2222 1111100 0000111222
Q ss_pred HHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccCCC---CceEEeccC
Q 027009 168 FTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGD---HDVYFTDDM 215 (229)
Q Consensus 168 m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~~~---aDi~~~sD~ 215 (229)
.+..|. ++-+++. +++ |||.|+|++-++|.-+.+.-+ .-+.+..|+
T Consensus 82 ~~y~RL-~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~ 131 (246)
T cd00505 82 VTLTKL-HLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDP 131 (246)
T ss_pred ceeHHH-HHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCc
Confidence 233333 3556677 785 999999999999999888642 444444454
No 8
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=80.46 E-value=36 Score=29.11 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCchHHHHHHhhccCCe-EEEEEeCc--chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~N~--ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+++.....+. +++=.=+. .+..+.+.-+.-+++.+..+++++...|.++.+++++..|.
T Consensus 87 ~iptL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~ 155 (230)
T cd08563 87 KIPTLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPK 155 (230)
T ss_pred cCCCHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCC
Confidence 46799999998774444 33332222 23456666666677777788999999999999999987675
No 9
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=78.77 E-value=6.5 Score=35.21 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=52.9
Q ss_pred EEEEeCcchHHHHHHHHHHhhhccCCCcEEE-EE----ecHHHHHHHhc-----CCCceeEecCCCCCCcccccccchhH
Q 027009 96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLV-IA----EDYATLYKVNG-----RWPGHAVLVPPAPDSQTAHKFGSQGF 165 (229)
Q Consensus 96 IVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLV-vA----lD~~t~~~~~~-----~~pg~~vl~~~~~d~~~~~~~gs~~F 165 (229)
||+++...+..++...+..+|+.|..-.+=| .. ++++..+.+.. .....++..++..+. .+...+|
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~----~~~~~~~ 79 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGK----SFSKKGF 79 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeecccccc----ccccCCc
Confidence 4555555888888888898988765444333 33 23334333332 111122322222211 0111122
Q ss_pred HHHHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC
Q 027009 166 FNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG 205 (229)
Q Consensus 166 ~~m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~ 205 (229)
.. + ...++--=| +||+.|+|.|-++||-.+|+.
T Consensus 80 ----~~--K-~lA~l~ssFeevllLDaD~vpl~~p~~lF~~ 113 (271)
T PF11051_consen 80 ----QN--K-WLALLFSSFEEVLLLDADNVPLVDPEKLFES 113 (271)
T ss_pred ----hh--h-hhhhhhCCcceEEEEcCCcccccCHHHHhcC
Confidence 01 1 123333333 599999999999999999973
No 10
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=77.87 E-value=48 Score=29.29 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=43.9
Q ss_pred CCchHHHHHHhhccCCe-EEEEEeCcchHHHHHHHHHHhhhcc-CCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAVSQPYLPFLNNWLISISRQK-HQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~N~ay~dfl~Nwl~sl~r~g-~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+|+.+...+. +.+=.=+.. ..+...-+.-+++.+ ..++++|...|.++..++++..|.
T Consensus 87 ~iptL~evl~~~~~~~~~l~iEiK~~~-~~~~~~v~~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~ 153 (258)
T cd08573 87 KIPTLEEAVKECLENNLRMIFDVKSNS-SKLVDALKNLFKKYPGLYDKAIVCSFNPIVIYKVRKADPK 153 (258)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEeCCCc-HHHHHHHHHHHHHCCCccCCEEEEECCHHHHHHHHHhCCC
Confidence 46799999998765443 433332222 244444444455555 678999999999999999887675
No 11
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=74.70 E-value=47 Score=29.78 Aligned_cols=64 Identities=14% Similarity=-0.011 Sum_probs=45.9
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCC
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWP 142 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~p 142 (229)
+.++|+|+++.+.. ..+.+=.=+.....+.+.-++-+++.+..++++|...|.++.+++++..|
T Consensus 93 ~iPtL~evl~~~~~-~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p 156 (263)
T cd08580 93 GIPTLEQVLRAFPD-TPFILDMKSLPADPQAKAVARVLERENAWSRVRIYSTNADYQDALAPYPQ 156 (263)
T ss_pred cCccHHHHHHhhcC-CeEEEEECCCCcHHHHHHHHHHHHhcCCCCCEEEEECCHHHHHHHHhcCc
Confidence 46899999987753 23333332223335666666777777778899999999999999988777
No 12
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=74.41 E-value=55 Score=28.02 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCchHHHHHHhhccCCe-EEEEEeCc-chHHHHHHHHHHhhhc-cCCCcEEEEEecHHHHHHHhcCCCceeEe--cCCCC
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAVSQ-PYLPFLNNWLISISRQ-KHQDQVLVIAEDYATLYKVNGRWPGHAVL--VPPAP 152 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~N~-ay~dfl~Nwl~sl~r~-g~~~nvLVvAlD~~t~~~~~~~~pg~~vl--~~~~~ 152 (229)
+.++|+|+++.....+. +++=.=.. ....+...-+.-+++. +..+++++.+.|.+..+.+++..|.+... .....
T Consensus 85 ~iptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~ 164 (233)
T cd08582 85 KVPTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKS 164 (233)
T ss_pred cCCCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCc
Confidence 36799999998775443 33322210 1223444444445555 34689999999999999998876763221 11111
Q ss_pred CCc-------cccccc-chhHHHHHhhhhHHHHHHHHcCCcEEEeecceeeecCCcc----ccCCCCceEEec
Q 027009 153 DSQ-------TAHKFG-SQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFP----YLQGDHDVYFTD 213 (229)
Q Consensus 153 d~~-------~~~~~g-s~~F~~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrDP~p----~f~~~aDi~~~s 213 (229)
... .....+ +..+.. .....++..+.+.|..|.. |-=|--. ++..+.|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~v~~~~~~G~~v~~------wTvn~~~~~~~l~~~GVdgi~TD 229 (233)
T cd08582 165 PKEDPRPLAKSGGAAGLDLSYEK--KLNPAFIKALRDAGLKLNV------WTVDDAEDAKRLIELGVDSITTN 229 (233)
T ss_pred cccchhHHHHhhCceEEcccccc--cCCHHHHHHHHHCCCEEEE------EeCCCHHHHHHHHHCCCCEEEcC
Confidence 000 000000 111110 2466788888888988743 4333222 222367777754
No 13
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=72.75 E-value=68 Score=28.35 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=46.4
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+-++|+|+++.... -.+.+=.=+....++.+..+.-+++.+..+++++...|.+.++++++..|.
T Consensus 96 ~iptL~evl~~~~~-~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~ 160 (264)
T cd08575 96 RIPTLEEVFKAFPD-TPINIDIKSPDAEELIAAVLDLLEKYKREDRTVWGSTNPEYLRALHPENPN 160 (264)
T ss_pred cCCcHHHHHHhCCC-CeEEEEECCCCHHHHHHHHHHHHHhccccceEEEEeCCHHHHHHHHHhCcc
Confidence 46799999998743 334433333332456677777777777788999999999999999876664
No 14
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=72.04 E-value=57 Score=28.20 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=60.8
Q ss_pred cCCchHHHHHHhhccC---CeEEEEEeC-c-c-------hHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 77 WRDYTLSQAASFVAKN---GTIIVCAVS-Q-P-------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 77 ~~~~~L~~lL~~vA~n---~tVIVt~~N-~-a-------y~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
-+.++|+|+|+.+... +..+..=.- . . ..++...-+.-+++.+..+++++...|.+..+.+++..|..
T Consensus 107 ~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~ 186 (263)
T cd08567 107 TRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDI 186 (263)
T ss_pred ccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCc
Confidence 3578999999987643 332222111 1 1 12344555555666666789999999999999888766653
Q ss_pred eEe--cCCCC--CCc------ccccccchhHHHHHhhhhHHHHHHHHcCCcEEE
Q 027009 145 AVL--VPPAP--DSQ------TAHKFGSQGFFNFTSRRPCHLLHILELGYNVMY 188 (229)
Q Consensus 145 ~vl--~~~~~--d~~------~~~~~gs~~F~~m~~~K~~~l~~vLelGy~VL~ 188 (229)
... ..... ... +...++ ..+ ......+++.+.+.|..|..
T Consensus 187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~G~~v~v 236 (263)
T cd08567 187 PTVALTEETTLGNLPRAAKKLGADIWS-PYF---TLVTKELVDEAHALGLKVVP 236 (263)
T ss_pred cEEEEecCCcccCHHHHHHHhCCcEEe-cch---hhcCHHHHHHHHHCCCEEEE
Confidence 221 11110 100 000111 111 12356788888888988764
No 15
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=65.76 E-value=85 Score=27.00 Aligned_cols=66 Identities=6% Similarity=0.011 Sum_probs=42.0
Q ss_pred CCchHHHHHHhhccCCeEE--EEEeCc---chHHHHHHHHHHhhhc--cCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTII--VCAVSQ---PYLPFLNNWLISISRQ--KHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVI--Vt~~N~---ay~dfl~Nwl~sl~r~--g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+++.....+.+. +=.=.. .+..+...-+..+++. +..+++++...|.+.++.+++..|.
T Consensus 84 ~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~ 156 (237)
T cd08583 84 TPMDFKDVIDLLKKYPDVYIVTDTKQDDDNDIKKLYEYIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPF 156 (237)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEecCCCcccHHHHHHHHHHHHHhhcccccceeEEEecCHHHHHHHHHhCCC
Confidence 3679999998887433222 211111 2233445555556553 3567899999999999998876664
No 16
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=65.11 E-value=14 Score=34.55 Aligned_cols=106 Identities=19% Similarity=0.167 Sum_probs=63.8
Q ss_pred EEEEeCcchHHHHHHHHHHh----hhccCCCcEEEEEecHHHHHHHhcC---CCceeEecCCCCCCcccccc--cchhHH
Q 027009 96 IVCAVSQPYLPFLNNWLISI----SRQKHQDQVLVIAEDYATLYKVNGR---WPGHAVLVPPAPDSQTAHKF--GSQGFF 166 (229)
Q Consensus 96 IVt~~N~ay~dfl~Nwl~sl----~r~g~~~nvLVvAlD~~t~~~~~~~---~pg~~vl~~~~~d~~~~~~~--gs~~F~ 166 (229)
|+-+++++|+.-+.-=+.|+ ++....=|+++.-.+++-.+++++. +.....+. ..+.+.-..+ .++.|.
T Consensus 5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~--~id~~~~~~~~~~~~~~s 82 (325)
T COG1442 5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLE--VIDIEPFLDYPPFTKRFS 82 (325)
T ss_pred EEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeE--EEechhhhcccccccchH
Confidence 67778889998555444444 4322344677777888877777763 21111111 1111111111 466677
Q ss_pred HHHhhhhHHHHHHHHcCCcEEEeecceeeecCCccccC
Q 027009 167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQ 204 (229)
Q Consensus 167 ~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrDP~p~f~ 204 (229)
.|+-.|- ++-++....=.+|+.|+|+|..+|=-..|.
T Consensus 83 ~~v~~R~-fiadlf~~~dK~lylD~Dvi~~g~l~~lf~ 119 (325)
T COG1442 83 KMVLVRY-FLADLFPQYDKMLYLDVDVIFCGDLSELFF 119 (325)
T ss_pred HHHHHHH-HHHHhccccCeEEEEecCEEEcCcHHHHHh
Confidence 7776664 345566666679999999999988766665
No 17
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=62.94 E-value=1.2e+02 Score=27.40 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=41.3
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+-++|+|+|+... +-.+.+=.= ..-..+.+.-+.-+++.+..+++++...|.++.+.+++..|..
T Consensus 121 ~IPtL~EvL~~~~-~~~lnIEiK-~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i 185 (300)
T cd08612 121 RIPLLEEVFEAFP-DTPINIDIK-VENDELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNI 185 (300)
T ss_pred CCCCHHHHHHhCC-CCeEEEEEC-CCchHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCc
Confidence 4679999998763 322222111 1111244444455566666789999999999999998866653
No 18
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=61.47 E-value=26 Score=33.01 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=58.6
Q ss_pred HHHHHhhc--cCCeE-EEEEeCcchHHHHHHHHHHhhh---ccCCCcEEEEEecHHHHHHHhcCCCcee--EecCCCCCC
Q 027009 83 SQAASFVA--KNGTI-IVCAVSQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPPAPDS 154 (229)
Q Consensus 83 ~~lL~~vA--~n~tV-IVt~~N~ay~dfl~Nwl~sl~r---~g~~~nvLVvAlD~~t~~~~~~~~pg~~--vl~~~~~d~ 154 (229)
.++|++.- .|=|| +++++-..|..|++.|++|..+ .|..-++.|++-+.+..-.+. .-|+.. ++.-
T Consensus 87 ~~~l~~~y~~~n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~-l~~~r~~~V~~v----- 160 (337)
T PF03414_consen 87 RDILNEYYKQQNITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIE-LGPGRRLKVFEV----- 160 (337)
T ss_dssp HHHHHHHHHHCT-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-------TTEEEEEEE------
T ss_pred HHHHHHHHHhcCceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccc-cCCCceeEEEEe-----
Confidence 44555544 33344 4556668999999999999987 355667777776665433222 123322 2210
Q ss_pred cccccccchhHHHHHhhhhHHHHHHHH----cCCc-EEEeecceeeecCCc
Q 027009 155 QTAHKFGSQGFFNFTSRRPCHLLHILE----LGYN-VMYNDVDMVWLKDPF 200 (229)
Q Consensus 155 ~~~~~~gs~~F~~m~~~K~~~l~~vLe----lGy~-VL~sDvDvVWLrDP~ 200 (229)
+ ....+......|...+.+..+ ...| +.+.|+|++ |+|++
T Consensus 161 ~-----~~~~Wqd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~-F~~~v 205 (337)
T PF03414_consen 161 Q-----EEKRWQDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMV-FQDHV 205 (337)
T ss_dssp S-----GGSSHHHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEE-E-S-B
T ss_pred c-----ccCCCccchhHHHHHHHHHHHHHHhhcCCEEEEEecceE-Eeccc
Confidence 0 123466666777777776543 3456 566799999 47766
No 19
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=59.60 E-value=49 Score=30.33 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=60.4
Q ss_pred HHHHhhc-c-CCe-EEEEEeCcchHHHHHHHHHHhhh---ccCCCcEEEEEecHHHHHHHhcCCCcee--EecCCCCCCc
Q 027009 84 QAASFVA-K-NGT-IIVCAVSQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPPAPDSQ 155 (229)
Q Consensus 84 ~lL~~vA-~-n~t-VIVt~~N~ay~dfl~Nwl~sl~r---~g~~~nvLVvAlD~~t~~~~~~~~pg~~--vl~~~~~d~~ 155 (229)
++|++.- + |-| =|+.++-..|..|++.|++|..+ .|...++.|.+-+.......+ .-|++. ++.- .
T Consensus 23 ~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~-lg~~r~~~V~~v-----~ 96 (271)
T cd02515 23 DVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVE-LGPGRRLTVLKI-----A 96 (271)
T ss_pred HHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccc-cCCCceeEEEEe-----c
Confidence 4455544 2 323 35556677899999999999988 355667777766555433221 123322 2211 0
Q ss_pred ccccccchhHHHHHhhhhHHHHHHHH--c--CCc-EEEeecceeeecC
Q 027009 156 TAHKFGSQGFFNFTSRRPCHLLHILE--L--GYN-VMYNDVDMVWLKD 198 (229)
Q Consensus 156 ~~~~~gs~~F~~m~~~K~~~l~~vLe--l--Gy~-VL~sDvDvVWLrD 198 (229)
....|...+-+|...+.+..+ . .+| +.+.|||+++.++
T Consensus 97 -----~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ 139 (271)
T cd02515 97 -----EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGP 139 (271)
T ss_pred -----cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeec
Confidence 123455566667777666655 2 455 5667999998654
No 20
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=59.17 E-value=1.2e+02 Score=26.32 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=43.4
Q ss_pred cCCchHHHHHHhhccCCeEEEEEe-CcchHHHHHHHHHHhhhccCC------CcEEEEEecHHHHHHHhcCCCc
Q 027009 77 WRDYTLSQAASFVAKNGTIIVCAV-SQPYLPFLNNWLISISRQKHQ------DQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 77 ~~~~~L~~lL~~vA~n~tVIVt~~-N~ay~dfl~Nwl~sl~r~g~~------~nvLVvAlD~~t~~~~~~~~pg 143 (229)
-+-++|+|+|+....+-.+.+=.= ...+..+.+.-+.-+++.+.. +++++.+.|.++.+++.+..|.
T Consensus 96 ~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~ 169 (256)
T cd08601 96 LKVPTLEEVIERYGGRANYYIETKSPDLYPGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPN 169 (256)
T ss_pred ccCCCHHHHHHHhccCceEEEEeeCCCCCCCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCC
Confidence 356899999997654333333211 122223445555556666555 7899999999999999876564
No 21
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.96 E-value=1.5e+02 Score=26.05 Aligned_cols=65 Identities=11% Similarity=-0.105 Sum_probs=43.5
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecH-HHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY-ATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~-~t~~~~~~~~pg 143 (229)
+-++|+|+++.+.. +.-+..=.-.....+.+.-+.-+++.+..+++++...|. +..++|++..|.
T Consensus 106 ~iptL~evl~~~~~-~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~ 171 (265)
T cd08564 106 KIPTLEDVLVTFKD-KLKYNIELKGREVGLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPN 171 (265)
T ss_pred cCCCHHHHHHHhcc-CcEEEEEeCCCchhHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcC
Confidence 57899999998764 322221111111245556666677777789999999999 888888875554
No 22
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=52.55 E-value=1.6e+02 Score=25.77 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=40.8
Q ss_pred CCchHHHHHHhhcc-CCeEEEEEeCc----ch-HHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAK-NGTIIVCAVSQ----PY-LPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~-n~tVIVt~~N~----ay-~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+-++|+|+|+.+.. +..+.+=.=.. .+ .++.+.-+.-+++.+...+.+++..|.. .+.+++..|..
T Consensus 112 ~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p~~ 183 (252)
T cd08574 112 SIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQSYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAPGF 183 (252)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEecCCcccCccHHHHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCCCC
Confidence 46899999998874 33454433221 12 2466666666776665566666666644 67787766763
No 23
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=52.47 E-value=94 Score=26.98 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=46.5
Q ss_pred CCchHHHHHHhhccCCe-EEEEEeCc----chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~N~----ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+++.+..++. +.+=.=+. .+..+..--+.-+++.+..+++++...|.++.+++++. |.
T Consensus 80 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~ 149 (235)
T cd08565 80 KIPTLEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLLERSVLTSFDPAVLTEVRKH-PG 149 (235)
T ss_pred CCCCHHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCcCCEEEEECCHHHHHHHHhC-CC
Confidence 36899999998765443 33332211 24456666666677777788999999999999999987 76
No 24
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=48.37 E-value=1.7e+02 Score=24.67 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=41.2
Q ss_pred CchHHHHHHhhccCCeEEEEEeCc---chHHHHHHHHHHhhhccCC-CcEEEEEecHHHHHHHhcCCCc
Q 027009 79 DYTLSQAASFVAKNGTIIVCAVSQ---PYLPFLNNWLISISRQKHQ-DQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 79 ~~~L~~lL~~vA~n~tVIVt~~N~---ay~dfl~Nwl~sl~r~g~~-~nvLVvAlD~~t~~~~~~~~pg 143 (229)
.++|+|+++.....+..+..=.-. ....+....+.-+++.+.. +++++.+.|.++...+++..|.
T Consensus 86 iptl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~ 154 (229)
T cd08562 86 IPTLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHASKLLLSSFSLEALRAARRAAPE 154 (229)
T ss_pred CCCHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCcCCEEEECCCHHHHHHHHHhCCC
Confidence 578999998765444333322211 1223333444445555553 8899999999999999987665
No 25
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=44.98 E-value=1.3e+02 Score=24.12 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=62.0
Q ss_pred CchHHHHHHhhccCCeEEEEEeCcc--hHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCceeE--ecCCCCCC
Q 027009 79 DYTLSQAASFVAKNGTIIVCAVSQP--YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV--LVPPAPDS 154 (229)
Q Consensus 79 ~~~L~~lL~~vA~n~tVIVt~~N~a--y~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~~v--l~~~~~d~ 154 (229)
.++|+|+++...+ +..+..=.-.. ..+++..-+.-+++.+..+++++...|.+...++++..|...+ ........
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 126 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLD 126 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCccc
Confidence 5799999987766 43333322222 1345555556666666789999999999999999887666332 11111110
Q ss_pred c---------ccccccchhHHHHHhhhhHHHHHHHHcCCcEEE
Q 027009 155 Q---------TAHKFGSQGFFNFTSRRPCHLLHILELGYNVMY 188 (229)
Q Consensus 155 ~---------~~~~~gs~~F~~m~~~K~~~l~~vLelGy~VL~ 188 (229)
. ..... ...|. .....++..+-+.|..|..
T Consensus 127 ~~~~~~~~~~~~~~v-~~~~~---~~~~~~i~~~~~~g~~v~~ 165 (189)
T cd08556 127 PLLAELARALGADAV-NPHYK---LLTPELVRAAHAAGLKVYV 165 (189)
T ss_pred chhhhHHHhcCCeEE-ccChh---hCCHHHHHHHHHcCCEEEE
Confidence 0 00001 11111 1456788888888988765
No 26
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=44.58 E-value=1e+02 Score=27.86 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=56.4
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcc-CCCcEEEEEec--HHHHHHHhcC--CCceeEecCCCCCCccccc-ccchhHHH
Q 027009 94 TIIVCAVSQPYLPFLNNWLISISRQK-HQDQVLVIAED--YATLYKVNGR--WPGHAVLVPPAPDSQTAHK-FGSQGFFN 167 (229)
Q Consensus 94 tVIVt~~N~ay~dfl~Nwl~sl~r~g-~~~nvLVvAlD--~~t~~~~~~~--~pg~~vl~~~~~d~~~~~~-~gs~~F~~ 167 (229)
.+||++. .+|.+.+..-+.|+-... ..-++-|+..+ ++-.+.+.+. ..+|.+......+...... ..+..|..
T Consensus 3 ~~iv~~~-~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~ 81 (280)
T cd06431 3 VAIVCAG-YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSG 81 (280)
T ss_pred EEEEEcc-CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccchhh
Confidence 3577777 899998888888874431 12344445443 2334445432 1233322111100000000 01111211
Q ss_pred H-HhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC
Q 027009 168 F-TSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG 205 (229)
Q Consensus 168 m-~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~ 205 (229)
. +-.|. ++-++|...+ .|||.|+|+|-..|..+.+.-
T Consensus 82 ~y~y~RL-~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~ 120 (280)
T cd06431 82 IYGLMKL-VLTEALPSDLEKVIVLDTDITFATDIAELWKI 120 (280)
T ss_pred HHHHHHH-HHHHhchhhcCEEEEEcCCEEEcCCHHHHHHH
Confidence 1 11222 3556676545 599999999999999987753
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=42.84 E-value=1.1e+02 Score=28.16 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=45.9
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEec----HHHHHH---HhcCCCce--eEecCCCCCCcccccccchh
Q 027009 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED----YATLYK---VNGRWPGH--AVLVPPAPDSQTAHKFGSQG 164 (229)
Q Consensus 94 tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD----~~t~~~---~~~~~pg~--~vl~~~~~d~~~~~~~gs~~ 164 (229)
+||+.+-|+. +.+..-++|+.++. ..++=|+..| +.+.+. +.+.+|+. .+...+. ...+..
T Consensus 44 SViiP~~nee--~~l~~~L~Sl~~q~-Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~-----~~G~~~-- 113 (373)
T TIGR03472 44 SVLKPLHGDE--PELYENLASFCRQD-YPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDAR-----RHGPNR-- 113 (373)
T ss_pred EEEEECCCCC--hhHHHHHHHHHhcC-CCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCC-----CCCCCh--
Confidence 5777777774 45677778887663 3333332222 233443 33456652 2221111 111111
Q ss_pred HHHHHhhhhHHHHHHH--HcCCcEEEeecceeeecCCcccc
Q 027009 165 FFNFTSRRPCHLLHIL--ELGYNVMYNDVDMVWLKDPFPYL 203 (229)
Q Consensus 165 F~~m~~~K~~~l~~vL--elGy~VL~sDvDvVWLrDP~p~f 203 (229)
|..-+...+ ..|=-++++|+|+++-.|=+..+
T Consensus 114 -------K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~l 147 (373)
T TIGR03472 114 -------KVSNLINMLPHARHDILVIADSDISVGPDYLRQV 147 (373)
T ss_pred -------HHHHHHHHHHhccCCEEEEECCCCCcChhHHHHH
Confidence 111222222 23555999999999966655443
No 28
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=42.80 E-value=86 Score=28.61 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=54.8
Q ss_pred eCcchHHHHHHHHHHhhhccCCCcEEEEEecHHH---HHHHh------cCCCceeEe-cCCCCCCcccccccchhHHHHH
Q 027009 100 VSQPYLPFLNNWLISISRQKHQDQVLVIAEDYAT---LYKVN------GRWPGHAVL-VPPAPDSQTAHKFGSQGFFNFT 169 (229)
Q Consensus 100 ~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t---~~~~~------~~~pg~~vl-~~~~~d~~~~~~~gs~~F~~m~ 169 (229)
+|.+|+.-+.-...++++.|-....+++.-+.-. ..... ++. ++.+. .+...... +++.|.. .
T Consensus 8 Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~-~~~v~~v~~~~~~~-----~~~~~~~-~ 80 (278)
T cd06914 8 TNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARD-KVIVKLIPVIIASG-----GDAYWAK-S 80 (278)
T ss_pred cChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhcc-CcEEEEcCcccCCC-----CCccHHH-H
Confidence 4889999888888999998776666665544321 11111 111 22221 12111111 2233322 2
Q ss_pred hhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC
Q 027009 170 SRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG 205 (229)
Q Consensus 170 ~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~ 205 (229)
..|..+... ..| .|+|.|+|++-++|--+.|.-
T Consensus 81 ~tKl~~~~l---~~y~kvlyLDaD~l~~~~ideLf~~ 114 (278)
T cd06914 81 LTKLRAFNQ---TEYDRIIYFDSDSIIRHPMDELFFL 114 (278)
T ss_pred HHHHHhccc---cceeeEEEecCChhhhcChHHHhcC
Confidence 445544443 357 499999999999988777764
No 29
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=42.25 E-value=36 Score=32.27 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=23.8
Q ss_pred HHHhhhhHHHHHHH-HcCCcEEEeecceeeecCC
Q 027009 167 NFTSRRPCHLLHIL-ELGYNVMYNDVDMVWLKDP 199 (229)
Q Consensus 167 ~m~~~K~~~l~~vL-elGy~VL~sDvDvVWLrDP 199 (229)
..++..+.-+.+++ +.|+.|++.|+|=||++.|
T Consensus 147 ~~GR~~l~~~~~~~~~~g~~VIYGDTDSvfv~~~ 180 (372)
T cd05530 147 ALGRYIITSTIKKARELGLKVLYGDTDSLFLWNP 180 (372)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEEeccceEEecC
Confidence 33444444444545 5899999999999999865
No 30
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proved by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=42.16 E-value=37 Score=31.81 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=17.8
Q ss_pred HcCCcEEEeecceeeecCCc
Q 027009 181 ELGYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 181 elGy~VL~sDvDvVWLrDP~ 200 (229)
+.|+.|++-|+|=||+.-|.
T Consensus 128 ~~g~~VIygDTDSi~v~~~~ 147 (347)
T cd05538 128 RRGATPVEVDTDGIYFIPPN 147 (347)
T ss_pred HCCCEEEEEcCCeeEEEeCC
Confidence 58999999999999998653
No 31
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=42.05 E-value=2.6e+02 Score=25.16 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=44.5
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcc--------------hHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQP--------------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~a--------------y~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+|+.+.++-.+.+=.=+.. +..+...-+.-+++.+..+++++...|.++...+++..|.
T Consensus 122 ~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p~ 201 (293)
T cd08572 122 PFPTLQEVLEQVPKDLGFNIEIKYPQLLEDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQNK 201 (293)
T ss_pred CCCCHHHHHHhCCCccceEEEEecCCccccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCcc
Confidence 46899999998754322333222111 1245666666677777788999999999999999875554
No 32
>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006134 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known, however, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain of DNA polymerase B appears to consist of more than one activities, possibly including elongation, DNA-binding and dNTP binding [].; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 1NOY_A 1NOZ_B 2CW7_A 2CW8_A 1WNS_A 2XHB_A 2VWK_A 2VWJ_A 1TGO_A ....
Probab=41.75 E-value=36 Score=32.58 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=24.4
Q ss_pred HHhhhhHHHHHHHH-c--CCcEEEeecceeeecCCc
Q 027009 168 FTSRRPCHLLHILE-L--GYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 168 m~~~K~~~l~~vLe-l--Gy~VL~sDvDvVWLrDP~ 200 (229)
.++..+..+.++++ . |+.|++-|+|=||++-|-
T Consensus 191 ~GR~~i~~~~~~~~~~~~g~~viYgDTDSv~v~~~~ 226 (466)
T PF00136_consen 191 TGREIIKKAIEIIEEMEFGFEVIYGDTDSVFVQFPD 226 (466)
T ss_dssp HHHHHHHHHHHHHHHHSCTEEEEEEETTEEEEECTT
T ss_pred hhHhhHHHHHHHHHhhcccceEEEEcccceEEecCC
Confidence 34445555555554 4 999999999999998884
No 33
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=39.20 E-value=1.4e+02 Score=28.87 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=41.6
Q ss_pred CchHHHHHHhhc--------cCCeEEEEEeCcchHHHHHHHH-HHhhhccCCCcEEEEEecHH---HHHHHhcCCCcee
Q 027009 79 DYTLSQAASFVA--------KNGTIIVCAVSQPYLPFLNNWL-ISISRQKHQDQVLVIAEDYA---TLYKVNGRWPGHA 145 (229)
Q Consensus 79 ~~~L~~lL~~vA--------~n~tVIVt~~N~ay~dfl~Nwl-~sl~r~g~~~nvLVvAlD~~---t~~~~~~~~pg~~ 145 (229)
..+|+++|.... +|+.+.|.+-+..-++ |. +.+-|.+-..++.|+-.+++ ...++.+.+|+..
T Consensus 172 v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~----W~~Q~L~k~~~~~~v~v~~~~~~~~~ie~~L~~~~P~l~ 246 (393)
T PRK15327 172 AAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTL----WARQSLARGDYDKNARVINENEENKRVSTWLDTYYPQLA 246 (393)
T ss_pred HHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhH----HHHHHHhhCCCcCceEEechHHHHHHHHHHHHhcCCCce
Confidence 348888888743 5788888877776554 44 45556555667777777766 3445555688864
No 34
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=38.88 E-value=2.6e+02 Score=24.26 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=66.2
Q ss_pred CCchHHHHHHhhccCCe-EEEEEe-CcchHHHHHHHHHHhhh---ccCCCcEEEEEecHHHHHHHhcCCCcee--EecCC
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAV-SQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPP 150 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~-N~ay~dfl~Nwl~sl~r---~g~~~nvLVvAlD~~t~~~~~~~~pg~~--vl~~~ 150 (229)
+.++|+|+++.....+. +.+=.= .......+..-+..+.+ .+..+++++...|.++..++++..|+.. .+...
T Consensus 94 ~iPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~ 173 (249)
T PRK09454 94 PLPTLSQVAARCRAHGMAANIEIKPTTGREAETGRVVALAARALWAGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDE 173 (249)
T ss_pred cCCCHHHHHHHHHhcCCEEEEEECCCCCcchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEecc
Confidence 36799999997654443 333221 11111112222222211 1334689999999999999998666532 22111
Q ss_pred CC-CC------cccccccchhHHHHHhhhhHHHHHHHHcCCcEEEeecceeeecCCcc---ccCCCCceEEeccCcccCC
Q 027009 151 AP-DS------QTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFP---YLQGDHDVYFTDDMAAVRT 220 (229)
Q Consensus 151 ~~-d~------~~~~~~gs~~F~~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrDP~p---~f~~~aDi~~~sD~~~~~p 220 (229)
.. +. -+...++ ..|. .....++..+.+.|+.|..=.+ .||-. ++.-+.|-++++.-..-+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~v~~~~~~g~~v~~WTv-----n~~~~~~~l~~~GVdgIiTD~p~~~~~ 244 (249)
T PRK09454 174 WPDDWLELTRRLGCVSLH-LNHK---LLDEARVAALKAAGLRILVYTV-----NDPARARELLRWGVDCICTDRIDLIGP 244 (249)
T ss_pred ccccHHHHHHhcCCeEEe-cccc---cCCHHHHHHHHHCCCEEEEEeC-----CCHHHHHHHHHcCCCEEEeCChHhcCc
Confidence 00 00 0011111 1111 1256788888888888743222 23332 2223678777554433333
No 35
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=38.51 E-value=2.3e+02 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHHcCC-cEEEeecceeeecCCccccC
Q 027009 175 HLLHILELGY-NVMYNDVDMVWLKDPFPYLQ 204 (229)
Q Consensus 175 ~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~ 204 (229)
++..+|...+ .|||.|+|+|...|=-+.+.
T Consensus 87 ~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~ 117 (248)
T cd06432 87 FLDVLFPLNVDKVIFVDADQIVRTDLKELMD 117 (248)
T ss_pred HHHHhhhhccCEEEEEcCCceecccHHHHHh
Confidence 3444887777 59999999999866555554
No 36
>COG1438 ArgR Arginine repressor [Transcription]
Probab=37.67 E-value=93 Score=26.03 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=49.2
Q ss_pred hHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhc------cCCCcEEEEEecHHHHHHHhc
Q 027009 81 TLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQ------KHQDQVLVIAEDYATLYKVNG 139 (229)
Q Consensus 81 ~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~------g~~~nvLVvAlD~~t~~~~~~ 139 (229)
-+++++-.+..++.+||-=++-|.+..+.+.+.++... -+.+-++|+|.|+++.+.|.+
T Consensus 80 ~~~~~v~~vd~~~~~ivlkT~PG~A~~ia~~lD~~~~~eIlGTIaGdDTilVi~r~~~~a~~l~~ 144 (150)
T COG1438 80 YLKDLVLSIDRNGNLIVLKTSPGAAQLIARLLDSLAKDEILGTIAGDDTILVICRSEETAKELYE 144 (150)
T ss_pred HHHHHheeeccCCcEEEEEeCCchHHHHHHHHHhcCchhhheeeeCCCeEEEEecCchhHHHHHH
Confidence 46788888888999999999999999999999887652 247889999999998887765
No 37
>PRK14762 membrane protein; Provisional
Probab=37.27 E-value=44 Score=19.91 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhh
Q 027009 45 VLLSLLVVLGVI 56 (229)
Q Consensus 45 ~~~~~~~~~~~~ 56 (229)
.+++|++|.|+|
T Consensus 12 fligllvvtgvf 23 (27)
T PRK14762 12 FLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHH
Confidence 489999999997
No 38
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=36.61 E-value=2.3e+02 Score=25.04 Aligned_cols=66 Identities=11% Similarity=-0.103 Sum_probs=40.8
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCc-c----h---HHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQ-P----Y---LPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~-a----y---~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+-++|+|+|+.+..+-.+.+=.=.. . . ..+++.-+.-+++.+..+++++...|.++++++++..|.
T Consensus 119 ~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~ 192 (282)
T cd08605 119 SIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSL 192 (282)
T ss_pred CCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCcc
Confidence 4789999999875432233322211 1 1 112233334345555668899999999999999876554
No 39
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=36.47 E-value=1.8e+02 Score=21.67 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=46.2
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhc-cCCCcEEEEEecH---HHHHHHhcC---CCceeEec-CCCCCCcccccccchhH
Q 027009 94 TIIVCAVSQPYLPFLNNWLISISRQ-KHQDQVLVIAEDY---ATLYKVNGR---WPGHAVLV-PPAPDSQTAHKFGSQGF 165 (229)
Q Consensus 94 tVIVt~~N~ay~dfl~Nwl~sl~r~-g~~~nvLVvAlD~---~t~~~~~~~---~pg~~vl~-~~~~d~~~~~~~gs~~F 165 (229)
+||+++-|. .+.+...+.|+.+. .....++ ++-|. ++.+.+++. .+...++. ++..+
T Consensus 1 Svvip~~n~--~~~l~~~l~sl~~q~~~~~eii-vvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g------------ 65 (169)
T PF00535_consen 1 SVVIPTYNE--AEYLERTLESLLKQTDPDFEII-VVDDGSTDETEEILEEYAESDPNIRYIRNPENLG------------ 65 (169)
T ss_dssp EEEEEESS---TTTHHHHHHHHHHHSGCEEEEE-EEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSH------------
T ss_pred CEEEEeeCC--HHHHHHHHHHHhhccCCCEEEE-Eecccccccccccccccccccccccccccccccc------------
Confidence 478888887 56777778887776 2234444 34333 356666542 22333322 21111
Q ss_pred HHHHhhhhHHHHHHHHcCCcEEEeecceeeecCCcccc
Q 027009 166 FNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYL 203 (229)
Q Consensus 166 ~~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrDP~p~f 203 (229)
+...+...+.. ..|-=+++.|.|.+|..+=+..+
T Consensus 66 --~~~~~n~~~~~--a~~~~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 66 --FSAARNRGIKH--AKGEYILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp --HHHHHHHHHHH----SSEEEEEETTEEE-TTHHHHH
T ss_pred --ccccccccccc--cceeEEEEeCCCceEcHHHHHHH
Confidence 11112222332 33447999999999987744333
No 40
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=36.18 E-value=45 Score=31.24 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=19.1
Q ss_pred HHHHHH-HcCCcEEEeecceeeecC
Q 027009 175 HLLHIL-ELGYNVMYNDVDMVWLKD 198 (229)
Q Consensus 175 ~l~~vL-elGy~VL~sDvDvVWLrD 198 (229)
....++ +.|+.|++-|+|=+|++-
T Consensus 137 ~~~~~~e~~g~~VIygDTDSvfv~~ 161 (352)
T cd05531 137 RAKEIAEEMGFRVLHGIVDSLWIQG 161 (352)
T ss_pred HHHHHHHHcCCEEEEEccccceeec
Confidence 333444 599999999999999984
No 41
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=35.41 E-value=2.1e+02 Score=24.87 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+.++|+|+|+.+..+ ..+..=.-.. ....-+.-+++.+..+++++.+.|.+..+.+++..|..
T Consensus 86 ~iptL~evl~~~~~~-~~l~iEiK~~---~~~~~~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~ 148 (240)
T cd08566 86 KVPTLEEALAWAKGK-ILLNLDLKDA---DLDEVIALVKKHGALDQVIFKSYSEEQAKELRALAPEV 148 (240)
T ss_pred CCCCHHHHHHhhhcC-cEEEEEECch---HHHHHHHHHHHcCCcccEEEEECCHHHHHHHHHhCCCC
Confidence 478999999986653 2222222222 23344455556666789999999999999999877764
No 42
>PHA03164 hypothetical protein; Provisional
Probab=35.39 E-value=30 Score=26.02 Aligned_cols=53 Identities=25% Similarity=0.190 Sum_probs=24.3
Q ss_pred ccccCCCCCCC-CCCCCCCCCC-CCCccCCcchhhhhhHHHHHH--HHHHHHHHhhh
Q 027009 4 WLHQRPLHNPL-PNPYPLSPRN-SMTFQFQRPMLLVLNRTTLLV--LLSLLVVLGVI 56 (229)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 56 (229)
|+||--+..-+ --|+|.+.++ ++...-.|--...+..++|.+ +||+++|+-+|
T Consensus 25 spH~~NdtsfveclpPpqisrtawnlwnnrRktftFlvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 25 SPHQENDTSFVECLPPPQISRTAWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred ccccccCcccceecCCcccCchhHHHHHhhhheeehHHHHHHHHHHHHHHHHHHHhe
Confidence 45665433322 1344443333 443222333335566666644 55555555554
No 43
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.54 E-value=3e+02 Score=23.69 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=43.3
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+-++|+|+++... + ..+..=.-..-..+...-+.-+++.+..+++++.+.|.+..+.+.+..|.+
T Consensus 93 ~iptL~evl~~~~-~-~~~~ieiK~~~~~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~ 157 (249)
T cd08561 93 RIPTLEELFEAFP-D-VRLNIEIKDDGPAAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRV 157 (249)
T ss_pred cCCCHHHHHHhCc-C-CcEEEEECCCchhHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCc
Confidence 4789999998763 3 222221211112355555566666667889999999999999999877753
No 44
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=34.05 E-value=3.3e+02 Score=24.02 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=41.6
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCc-chH--------------HHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCC
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQ-PYL--------------PFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWP 142 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~-ay~--------------dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~p 142 (229)
+-++|+|+|+.+..+-.+.+=.=.. .+. .+...-+.-+++.+..+++++...|.++...+++..|
T Consensus 107 ~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p 186 (286)
T cd08606 107 PFTTLEELLKKLPKSVGFNIELKYPMLHEAEEEEVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQP 186 (286)
T ss_pred CCCcHHHHHHhCCCccceEEEEecCCcchhhhcccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCc
Confidence 3579999999875432233322221 111 2334445556666667899999999999998887545
Q ss_pred c
Q 027009 143 G 143 (229)
Q Consensus 143 g 143 (229)
.
T Consensus 187 ~ 187 (286)
T cd08606 187 G 187 (286)
T ss_pred C
Confidence 4
No 45
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=33.53 E-value=57 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred hHHHHHHH-HcCCcEEEeecceeeecCCc
Q 027009 173 PCHLLHIL-ELGYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 173 ~~~l~~vL-elGy~VL~sDvDvVWLrDP~ 200 (229)
+....+++ +.|+.|++-|+|=||+.-|.
T Consensus 142 l~~~~~~ie~~g~~VIYGDTDSifv~~~~ 170 (323)
T cd00145 142 IQDTIALVEEHGARVIYGDTDSIFVSLPK 170 (323)
T ss_pred HHHHHHHHHHcCCEEEEECCCceEEEeCC
Confidence 33334444 57999999999999998765
No 46
>PF09879 DUF2106: Predicted membrane protein (DUF2106); InterPro: IPR011313 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaF transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=33.42 E-value=58 Score=27.27 Aligned_cols=78 Identities=19% Similarity=0.407 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC--------cccccc--CCchHHHHHHhhc--cCCeEEEEEeCcch
Q 027009 37 VLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNAT--------SSLAKW--RDYTLSQAASFVA--KNGTIIVCAVSQPY 104 (229)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--------~~~~~~--~~~~L~~lL~~vA--~n~tVIVt~~N~ay 104 (229)
.+.|.++ .++|+++++|.++|-.=.++-.||--. ++...+ .---|++-..-.| ..+.-++..++ +|
T Consensus 15 ~v~rlfa-~~l~~i~~~gl~~P~~~n~dQLYPkp~pq~qi~~~~pLaPYDRGGvpl~~pa~vksQYPq~~p~~G~iT-aY 92 (153)
T PF09879_consen 15 NVPRLFA-LFLCLILIIGLFVPLTYNEDQLYPKPAPQSQIDAKSPLAPYDRGGVPLEEPADVKSQYPQNEPNLGKIT-AY 92 (153)
T ss_pred hHHHHHH-HHHHHHHHHHHhCCcccCcccccCCCCchhhcccCCCCCcccCCCCccCCcchhhhhCCccCcchhhhh-hh
Confidence 3566666 689999999999998766666665411 111111 0112333111122 55666666665 66
Q ss_pred HHHHHHHHHHhh
Q 027009 105 LPFLNNWLISIS 116 (229)
Q Consensus 105 ~dfl~Nwl~sl~ 116 (229)
+-=+..|+....
T Consensus 93 LtPia~~i~~~t 104 (153)
T PF09879_consen 93 LTPIAIWISQTT 104 (153)
T ss_pred hhHHHHHHHhcc
Confidence 666667776543
No 47
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some members of the archaea also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases. Structural comparison of the thermostable DNA polymerase type B to its mesostable homolog suggests several adaptations to high temperature such as shorter loops, disulfide bridges, and increasing electrostatic interaction at subdomain interfaces.
Probab=32.27 E-value=56 Score=30.73 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.0
Q ss_pred HcCCcEEEeecceeeecCCc
Q 027009 181 ELGYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 181 elGy~VL~sDvDvVWLrDP~ 200 (229)
+.|+.|++.|+|=||++-|-
T Consensus 151 ~~g~~VIYgDTDSvfv~~~~ 170 (371)
T cd05536 151 EKGFKVIYGDTDSLFVKIDG 170 (371)
T ss_pred HcCCEEEEEcCcccEEeecC
Confidence 48999999999999999764
No 48
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=31.52 E-value=1.8e+02 Score=25.27 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhhc-c-----CCCCCCC--CCCCCCccccccCCchHHHHHHhhccC-CeEEEEEeCcc
Q 027009 40 RTTLLVLLSLLVVLGVIL-P-----WTGTPGF--MFPNATSSLAKWRDYTLSQAASFVAKN-GTIIVCAVSQP 103 (229)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-~-----~~~~p~~--~~~~~~~~~~~~~~~~L~~lL~~vA~n-~tVIVt~~N~a 103 (229)
.+.+++++.+++++|+.+ + +.+.+.+ ..|+.- +..++++++++||=+-=-.+ +.-|++++|..
T Consensus 11 tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~~-~~P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~ 82 (183)
T KOG1110|consen 11 TPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPKE-SLPKVRDFTVEELRQYDGSDPDKPILLAINGK 82 (183)
T ss_pred hhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCcc-CCCcccccCHHHHHhcCCCCCCCceEEEecce
Confidence 344456677777777764 2 2222222 222222 35677899999986654422 45555566643
No 49
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=31.42 E-value=1.9e+02 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=18.6
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcc
Q 027009 94 TIIVCAVSQPYLPFLNNWLISISRQK 119 (229)
Q Consensus 94 tVIVt~~N~ay~dfl~Nwl~sl~r~g 119 (229)
+||+.+-|++=.+++..-+.|+..+.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~ 26 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQT 26 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcC
Confidence 46777888765567778888887653
No 50
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=31.08 E-value=2e+02 Score=20.64 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhccCCCcEEEEEec--HHHHHHHhcCCCceeEecCCCCCCcccccccchhHHHHHhhhhHHHHHHHHcC
Q 027009 106 PFLNNWLISISRQKHQDQVLVIAED--YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELG 183 (229)
Q Consensus 106 dfl~Nwl~sl~r~g~~~nvLVvAlD--~~t~~~~~~~~pg~~vl~~~~~d~~~~~~~gs~~F~~m~~~K~~~l~~vLelG 183 (229)
+++..|+.+-.+.| .++++|+--+ +++.+.|++. ++..+..... .+.. ...++. .+..++.. ..+
T Consensus 5 ~~L~~wl~~~~~lG-~d~i~i~d~~s~D~t~~~l~~~-~~v~i~~~~~-------~~~~-~~~~~~-~~~~~~~~--~~~ 71 (97)
T PF13704_consen 5 DYLPEWLAHHLALG-VDHIYIYDDGSTDGTREILRAL-PGVGIIRWVD-------PYRD-ERRQRA-WRNALIER--AFD 71 (97)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEECCCCccHHHHHHhC-CCcEEEEeCC-------Cccc-hHHHHH-HHHHHHHh--CCC
Confidence 57899999988885 7887765432 4577777753 5544432111 0110 011111 11112221 124
Q ss_pred Cc-EEEeecceeeecCCc
Q 027009 184 YN-VMYNDVDMVWLKDPF 200 (229)
Q Consensus 184 y~-VL~sDvDvVWLrDP~ 200 (229)
.+ +++.|+|=.+.-++-
T Consensus 72 ~dWvl~~D~DEfl~~~~~ 89 (97)
T PF13704_consen 72 ADWVLFLDADEFLVPPPG 89 (97)
T ss_pred CCEEEEEeeeEEEecCCC
Confidence 44 899999988876663
No 51
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=30.91 E-value=68 Score=30.29 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.7
Q ss_pred HcCCcEEEeecceeeecCCc
Q 027009 181 ELGYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 181 elGy~VL~sDvDvVWLrDP~ 200 (229)
+.|+.|+|.|+|=||+.-|.
T Consensus 140 ~~g~~ViYgDTDSvfV~~~~ 159 (371)
T cd05537 140 QQGYQVIYGDTDSTFVWLGE 159 (371)
T ss_pred HcCCEEEEecCCceEEecCC
Confidence 68999999999999998553
No 52
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=30.27 E-value=2.8e+02 Score=23.58 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=41.3
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+-++|+|+|+.+..+..+.+=.=... ...--+.-+++.+..+++++...|.++.+++++..|.
T Consensus 78 ~iPtL~evl~~~~~~~~l~iEiK~~~---~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~ 140 (226)
T cd08568 78 LIPTLEEVFRALPNDAIINVEIKDID---AVEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPD 140 (226)
T ss_pred cCCCHHHHHHhcCCCcEEEEEECCcc---HHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCCC
Confidence 46799999987654333333222222 2233334455556678999999999999999987675
No 53
>TIGR02554 PrgH type III secretion system protein PrgH/EprH. In Samonella, this gene is part of a four-gene operon PrgHIJK and in general is found in type III secretion operons. PrgH has been shown to be required for secretion, as well as being a structural component of the needle complex.
Probab=30.12 E-value=4.1e+02 Score=25.58 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=41.5
Q ss_pred CchHHHHHHhhc--------cCCeEEEEEeCcchHHHHHHHH-HHhhhccCCCcEEEEEecHHH---HHHHhcCCCce
Q 027009 79 DYTLSQAASFVA--------KNGTIIVCAVSQPYLPFLNNWL-ISISRQKHQDQVLVIAEDYAT---LYKVNGRWPGH 144 (229)
Q Consensus 79 ~~~L~~lL~~vA--------~n~tVIVt~~N~ay~dfl~Nwl-~sl~r~g~~~nvLVvAlD~~t---~~~~~~~~pg~ 144 (229)
..+|+++|.... +||.+.|.+-+..-++ |. +.+-|.+-..++.|+-.+++- .+++.+.+|..
T Consensus 167 v~~L~~lL~g~~~p~~il~grDg~iyVla~~qrd~~----W~~Q~Llk~~~~e~v~v~~i~~~~~~i~~~L~~~~P~l 240 (389)
T TIGR02554 167 LAELNGLLGGAPVRFAVLPGRDGRIYVAAASQRDAE----WARQALLRAALPEKIEVAVIGAERQRVSRWLDEAGPQL 240 (389)
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCcEEEEEccccHhH----HHHHHHhhcCCCCCeEEechHHHHHHHHHHHHhhCCcc
Confidence 458888888743 5888888888876554 44 445565557788888777763 33444557764
No 54
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=29.69 E-value=47 Score=31.60 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=31.5
Q ss_pred cccchhHHHHHhhhhHHHHHHHHcCCc-EEEeecceeeec
Q 027009 159 KFGSQGFFNFTSRRPCHLLHILELGYN-VMYNDVDMVWLK 197 (229)
Q Consensus 159 ~~gs~~F~~m~~~K~~~l~~vLelGy~-VL~sDvDvVWLr 197 (229)
.+|.+.|++-+-.-+.++..+-+.|++ ++|.|||.+=.-
T Consensus 191 Q~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPen 230 (372)
T KOG3916|consen 191 QAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPEN 230 (372)
T ss_pred ecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccC
Confidence 357788888777778888887789999 899999987553
No 55
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only.
Probab=29.61 E-value=73 Score=30.28 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=20.6
Q ss_pred hHHHHHHH-HcCCcEEEeecceeeecCCc
Q 027009 173 PCHLLHIL-ELGYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 173 ~~~l~~vL-elGy~VL~sDvDvVWLrDP~ 200 (229)
+..+.+++ +.|+.|++.|+|=||++-+.
T Consensus 145 l~~~~~~~e~~g~~ViYgDTDSifv~~~~ 173 (400)
T cd05532 145 LQKTKDLVEKMNLEVIYGDTDSIMINTGT 173 (400)
T ss_pred HHHHHHHHHHcCCEEEEeCCCeEEEecCC
Confidence 33334444 57999999999999998543
No 56
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=27.84 E-value=96 Score=25.19 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHhhhccCC
Q 027009 31 QRPMLLVLNRTTLLVLLSLLVVLGVILPWT 60 (229)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (229)
+-|...+--|++|++..+|++++|.|+--+
T Consensus 45 r~P~k~i~lavvL~~fg~Lli~lg~fl~~~ 74 (124)
T KOG4753|consen 45 RHPVKEIALAVVLLVFGLLLIGLGFFLAGG 74 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 445544445566777889999999987544
No 57
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=27.76 E-value=4.9e+02 Score=23.98 Aligned_cols=113 Identities=12% Similarity=-0.028 Sum_probs=62.0
Q ss_pred CCchHHHHHHhhccCC-eEEEEEeC-----cchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCceeEecCCC
Q 027009 78 RDYTLSQAASFVAKNG-TIIVCAVS-----QPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPA 151 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~-tVIVt~~N-----~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~~vl~~~~ 151 (229)
+-++|+|+++.+...+ .+.+=.=. ..+..|.+--++-+++.+....-+ +..+.+..+.+++..|.........
T Consensus 137 ~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~~f~~~vl~~i~~~~~~~~~v-~~~~~~~l~~~~~~~P~~~~~~~~~ 215 (315)
T cd08609 137 TVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYSSFVFYTLETILKLGIPPDKV-WWLPDEYRHDVMKMEPGFKQVYGRQ 215 (315)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHHHHHcCCCcceE-EEeCHHHHHHHHHhCcCceeecccc
Confidence 4689999999887433 34332221 124567777777787776443333 3457777777776555432211100
Q ss_pred -----CCC---cccccccchhHHHHHh-----------hhhHHHHHHHHcCCcEEEeec
Q 027009 152 -----PDS---QTAHKFGSQGFFNFTS-----------RRPCHLLHILELGYNVMYNDV 191 (229)
Q Consensus 152 -----~d~---~~~~~~gs~~F~~m~~-----------~K~~~l~~vLelGy~VL~sDv 191 (229)
.+. .-.+..-++.+.+..+ +.+..+++++++|.+-++||-
T Consensus 216 ~~~~~~~~~~i~~~~~~l~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~ 274 (315)
T cd08609 216 KEMLMDGGNFMNLPYQDLSALEIKELRKDNVSVNLWVVNEPWLFSLLWCSGVSSVTTNA 274 (315)
T ss_pred hhhHhcCCeEEecccccCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHhcCCCEEEcCC
Confidence 000 0011222344444433 237778888888888888874
No 58
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.71 E-value=2.2e+02 Score=24.03 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=35.1
Q ss_pred chHHHHHHhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhccC----CCcEEEEEecHH
Q 027009 80 YTLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKH----QDQVLVIAEDYA 132 (229)
Q Consensus 80 ~~L~~lL~~vA------~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~----~~nvLVvAlD~~ 132 (229)
=||+|+..-.+ .+|.|++.-.+ +|.+=+..|+.++...|. ..+.++++.|.+
T Consensus 108 GTL~El~e~~~~~qlg~~~kPiil~n~~-g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~ 169 (178)
T TIGR00730 108 GTLEELFEVLTWAQLGIHQKPIILFNVN-GHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPD 169 (178)
T ss_pred chHHHHHHHHHHHHcCCCCCCEEEECCc-chHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHH
Confidence 37888876654 46777776554 677878888887766544 334677777766
No 59
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=25.03 E-value=5.6e+02 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=21.9
Q ss_pred HHHHHHcCC-cEEEeecceeeecCCccccC
Q 027009 176 LLHILELGY-NVMYNDVDMVWLKDPFPYLQ 204 (229)
Q Consensus 176 l~~vLelGy-~VL~sDvDvVWLrDP~p~f~ 204 (229)
+-++|. -+ .|||.|+|++..+|--+.+.
T Consensus 90 ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 90 LPSLLP-DVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHhh-hhceEEEeccceeecCCHHHHHH
Confidence 445565 44 69999999999999888775
No 60
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=24.97 E-value=1.7e+02 Score=24.22 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=41.3
Q ss_pred cCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHH--HHHHhcCCCceeE
Q 027009 91 KNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYAT--LYKVNGRWPGHAV 146 (229)
Q Consensus 91 ~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t--~~~~~~~~pg~~v 146 (229)
..+.|+||+++....+....++.++++..-...+++--++-.. .+.+.+..+.+.+
T Consensus 59 ~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~ev 116 (142)
T PF07801_consen 59 SSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEV 116 (142)
T ss_pred CCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEE
Confidence 3578999999999999999999999998667778887776553 3344443344433
No 61
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=24.93 E-value=1.2e+02 Score=21.59 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=38.5
Q ss_pred HHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhh------ccCCCcEEEEEecHHHHHHHhc
Q 027009 83 SQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISR------QKHQDQVLVIAEDYATLYKVNG 139 (229)
Q Consensus 83 ~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r------~g~~~nvLVvAlD~~t~~~~~~ 139 (229)
++.+..+...+..++--+--++.+.+.+.+..+.- ..+.+.++|++.+++..+.+.+
T Consensus 3 ~~~v~sv~~~~~~vvikt~pG~A~~va~~iD~~~~~~I~GtIAgdDTilvi~~~~~~a~~l~~ 65 (70)
T PF02863_consen 3 KESVVSVERSDNMVVIKTLPGNAQAVAAAIDQLNLPEIFGTIAGDDTILVICRSEEDAEELEE 65 (70)
T ss_dssp HHHEEEEEEESSEEEEEESTTCHHHHHHHHHHHCGTTEEEEEEESSEEEEEESTTSHHHHHHH
T ss_pred hHhEEeEeccCCEEEEEeCCCcHHHHHHHHHhcCCcccEEEEeCCCEEEEEeCCHHHHHHHHH
Confidence 34444555444444445557889999999988754 2348889999999887766654
No 62
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=24.61 E-value=1.8e+02 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=16.1
Q ss_pred cCCcEEEeecceeeecCCcccc
Q 027009 182 LGYNVMYNDVDMVWLKDPFPYL 203 (229)
Q Consensus 182 lGy~VL~sDvDvVWLrDP~p~f 203 (229)
.|--+++.|.|..|-.|=+..+
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHH
Confidence 3555899999998877666555
No 63
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=24.22 E-value=98 Score=24.60 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=44.1
Q ss_pred EEEEecHHHHHHHhc--CCCceeEecCCCCCCcccccccchhHHHHHhhhhHHHHHHHHcCCcEEEeec
Q 027009 125 LVIAEDYATLYKVNG--RWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDV 191 (229)
Q Consensus 125 LVvAlD~~t~~~~~~--~~pg~~vl~~~~~d~~~~~~~gs~~F~~m~~~K~~~l~~vLelGy~VL~sDv 191 (229)
+|++.-+++|-.+.+ ..+||+...|-. -.++........+.+|..-|..+.+.+-+.|.+|+|...
T Consensus 26 liisiG~~~YLalpkg~L~~gH~lIvPi~-H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~~vvf~E~ 93 (121)
T PF04677_consen 26 LIISIGDEVYLALPKGPLVPGHCLIVPIQ-HVPSLTELDEEVWEEIRNFQKSLRKMFASQGKDVVFFER 93 (121)
T ss_pred EEEEEcCcEEEEeCCCCccCCEEEEEecc-eecccccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 556666666554443 356777765522 112223334578999999999999999999999888764
No 64
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.82 E-value=2.1e+02 Score=23.60 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=36.4
Q ss_pred chHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHH
Q 027009 80 YTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYAT 133 (229)
Q Consensus 80 ~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t 133 (229)
=+|+|+..-.+.+|.|++.-.+.-|-+++... +...+..+..++++.|.+.
T Consensus 103 GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~~~---~~~~~~~~~~~~~~~~~~e 153 (159)
T TIGR00725 103 GTAIEILGAYALGGPVVVLRGTGGWTDRLSQV---LIEGVYLDERVIVEITPAE 153 (159)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcchHHHHHH---HhccccccceeEecCCHHH
Confidence 38888888888899999988888888876643 2222345556777777764
No 65
>PHA02523 43B DNA polymerase subunit B; Provisional
Probab=21.79 E-value=1.3e+02 Score=28.99 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=23.0
Q ss_pred hhHHHHHhhhhH-HHHHH-HHcCCc-EEEeecceeeecC
Q 027009 163 QGFFNFTSRRPC-HLLHI-LELGYN-VMYNDVDMVWLKD 198 (229)
Q Consensus 163 ~~F~~m~~~K~~-~l~~v-LelGy~-VL~sDvDvVWLrD 198 (229)
+...+.+.+|.. ++-.+ =+.||+ |+|.|+|-|++.=
T Consensus 78 re~Ik~i~~~~ney~~~l~~t~G~~~VIYgDTDSifv~~ 116 (391)
T PHA02523 78 QLAIRWIERKLNEYINELVKTTGVDYVCYIDTDSVYLNM 116 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcceEEEecCCeeEEEe
Confidence 344444445444 23333 345997 9999999999863
No 66
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=21.63 E-value=3.9e+02 Score=21.80 Aligned_cols=23 Identities=35% Similarity=0.235 Sum_probs=16.3
Q ss_pred HcCCc-EEEeecceeeecCCcccc
Q 027009 181 ELGYN-VMYNDVDMVWLKDPFPYL 203 (229)
Q Consensus 181 elGy~-VL~sDvDvVWLrDP~p~f 203 (229)
..|++ |++.|.|+.+-.|-+..+
T Consensus 73 ~~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 73 ENGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred hCCCCEEEEECCCCCcCHhHHHHH
Confidence 33565 788899998876666665
No 67
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.52 E-value=3e+02 Score=21.97 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=15.4
Q ss_pred HcCC-cEEEeecceeeecCCcccc
Q 027009 181 ELGY-NVMYNDVDMVWLKDPFPYL 203 (229)
Q Consensus 181 elGy-~VL~sDvDvVWLrDP~p~f 203 (229)
+.++ -+++.|.|.++-.|-+..+
T Consensus 77 ~~~~d~v~~ld~D~~~~~~~l~~l 100 (202)
T cd04185 77 ELGYDWIWLMDDDAIPDPDALEKL 100 (202)
T ss_pred ccCCCEEEEeCCCCCcChHHHHHH
Confidence 3344 4788999999866555443
No 68
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=21.34 E-value=5.2e+02 Score=22.02 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=38.5
Q ss_pred CCchHHHHHHhhccC---Ce-EEEEEeCcchHHHHHHHHHH-hhhcc----CCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKN---GT-IIVCAVSQPYLPFLNNWLIS-ISRQK----HQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n---~t-VIVt~~N~ay~dfl~Nwl~s-l~r~g----~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+++.+... +. +.|=.=...-..-+..-+.. +++.+ ..+++++.+.|.++.+++++..|.
T Consensus 81 ~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~v~~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~ 155 (234)
T cd08570 81 PMPTLKDVLEWLVEHELPDVKLMLDIKRDNDPEILFKLIAEMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPG 155 (234)
T ss_pred cCCcHHHHHHHHHhcCCCCeEEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCC
Confidence 467999999987632 32 33322221111122222322 33321 357899999999999999986665
No 69
>PLN02206 UDP-glucuronate decarboxylase
Probab=21.24 E-value=2.8e+02 Score=26.58 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=29.3
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCc-cCCcchhhhhhHHH--HHHHHHHHHHHhhhc
Q 027009 1 MSQWLHQRPLHNPLPNPYPLSPRNSMTF-QFQRPMLLVLNRTT--LLVLLSLLVVLGVIL 57 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 57 (229)
|++-|+-|.++...+..-+-||+.+.-. .-.||+ ..+.|-- +++|++.++--.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 59 (442)
T PLN02206 1 MASELINRRHEETQPTADAYYPKPIKPWFVVTRPI-RYMLREQRLVFVLVGIAIATLVFT 59 (442)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCcccCccHH-HHHHhhhhHHHHHHHHHHHHHHHh
Confidence 7778888877654433333344432220 024787 5555533 344666655555554
No 70
>PRK05761 DNA polymerase I; Reviewed
Probab=21.11 E-value=1.3e+02 Score=31.28 Aligned_cols=20 Identities=40% Similarity=0.777 Sum_probs=18.3
Q ss_pred HcCCcEEEeecceeeecCCc
Q 027009 181 ELGYNVMYNDVDMVWLKDPF 200 (229)
Q Consensus 181 elGy~VL~sDvDvVWLrDP~ 200 (229)
++|+.|++-|+|=||++.|.
T Consensus 557 ~~g~~VIYGDTDSvfv~~~~ 576 (787)
T PRK05761 557 ELGLKVLYGDTDSLFVWGPT 576 (787)
T ss_pred HcCCEEEEEeCceEEEECCC
Confidence 59999999999999999874
No 71
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=21.07 E-value=1.1e+02 Score=23.88 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=17.2
Q ss_pred HHHHcCCcEEEeecceeeecCC
Q 027009 178 HILELGYNVMYNDVDMVWLKDP 199 (229)
Q Consensus 178 ~vLelGy~VL~sDvDvVWLrDP 199 (229)
..--.|+.+||-|-|+||-.+-
T Consensus 20 k~~va~hgflfddg~~vw~e~~ 41 (111)
T PF02484_consen 20 KNEVARHGFLFDDGDIVWSEDD 41 (111)
T ss_pred HhhccccceEecCCcEEEecCC
Confidence 3444688899999999997654
No 72
>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed
Probab=20.92 E-value=6.2e+02 Score=25.99 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=49.9
Q ss_pred HHHhhccCCeEEEEEeCcchHH-HHHHHHHHhhhccCCCcEEEEEecHH---HHHHHhcCCCceeEecCCCCCCcccccc
Q 027009 85 AASFVAKNGTIIVCAVSQPYLP-FLNNWLISISRQKHQDQVLVIAEDYA---TLYKVNGRWPGHAVLVPPAPDSQTAHKF 160 (229)
Q Consensus 85 lL~~vA~n~tVIVt~~N~ay~d-fl~Nwl~sl~r~g~~~nvLVvAlD~~---t~~~~~~~~pg~~vl~~~~~d~~~~~~~ 160 (229)
.|++++++.+||....=..|+| ++.+|+.-... .. ...++|.|-- ....+-++ -|...+..+..
T Consensus 107 ~lr~~~~~~pvIfvp~HrS~lDylllsyvL~~~~--l~-~~~~~ag~nl~~~~lg~~lr~-~GafFirRsf~-------- 174 (621)
T PRK11915 107 QLRKLDRKATLAFAFSHRSYLDGMLLPEVILANR--LS-PALTFGGANLNFFPMGAWAKR-TGAIFIRRQTK-------- 174 (621)
T ss_pred HHHHhccCCCEEEEeccccccHHHHHHHHHHHcC--CC-CceeehhhhhcchhHHHHHHh-CCcEEeccCCC--------
Confidence 3577778899999999999999 67777654322 22 2334453322 22222222 23233322211
Q ss_pred cchhHHHHHhhhhHHHHHHHHcCCcEEEe
Q 027009 161 GSQGFFNFTSRRPCHLLHILELGYNVMYN 189 (229)
Q Consensus 161 gs~~F~~m~~~K~~~l~~vLelGy~VL~s 189 (229)
+.+-|..... .++..+++.|+++.+.
T Consensus 175 ~~~LY~~vl~---eYi~~ll~~G~~le~F 200 (621)
T PRK11915 175 DIPVYRFVLR---AYAAQLVQNHVNLTWS 200 (621)
T ss_pred CchHHHHHHH---HHHHHHHhCCCcEEEE
Confidence 1233433333 6788899999987653
No 73
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.89 E-value=4.6e+02 Score=24.66 Aligned_cols=66 Identities=8% Similarity=-0.023 Sum_probs=45.9
Q ss_pred cCCchHHHHHHhhccCCe-EEEEEeCcc----------hHHHHHHHHHHhhhccCC-CcEEEEEecHHHHHHHhcCCC
Q 027009 77 WRDYTLSQAASFVAKNGT-IIVCAVSQP----------YLPFLNNWLISISRQKHQ-DQVLVIAEDYATLYKVNGRWP 142 (229)
Q Consensus 77 ~~~~~L~~lL~~vA~n~t-VIVt~~N~a----------y~dfl~Nwl~sl~r~g~~-~nvLVvAlD~~t~~~~~~~~p 142 (229)
.+-++|+|+++.+...+. +.+=.=... ..++.+.-+.-+++.|.. +.++|...|.+++.++.+..|
T Consensus 148 ~~IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p 225 (356)
T cd08560 148 GTLMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEP 225 (356)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCC
Confidence 357899999998874332 222211111 225777888888887754 799999999999998876555
No 74
>PHA03334 putative DNA polymerase catalytic subunit; Provisional
Probab=20.69 E-value=1.2e+02 Score=33.89 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHhhhhHHHHHHH--HcCCcEEEeecceeeecCCcccc
Q 027009 165 FFNFTSRRPCHLLHIL--ELGYNVMYNDVDMVWLKDPFPYL 203 (229)
Q Consensus 165 F~~m~~~K~~~l~~vL--elGy~VL~sDvDvVWLrDP~p~f 203 (229)
-...++..+..+.+.. +.|+.|+|-|+|-|+++.|-.--
T Consensus 784 VTa~GRemI~~t~~~IE~e~G~~VIYGDTDSVfV~~p~~d~ 824 (1545)
T PHA03334 784 ITTLGRHKIKLVEEFIKKEPGMTVNYGDTDSVMFQLPPDDA 824 (1545)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeCCceEEEeCcccc
Confidence 3445555566555555 48999999999999999875443
No 75
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.38 E-value=2.6e+02 Score=21.57 Aligned_cols=40 Identities=8% Similarity=0.007 Sum_probs=30.8
Q ss_pred hHHHHHHhhc--cCCeEEEEEeCcchHHHHHHHHHHhhhccC
Q 027009 81 TLSQAASFVA--KNGTIIVCAVSQPYLPFLNNWLISISRQKH 120 (229)
Q Consensus 81 ~L~~lL~~vA--~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~ 120 (229)
..+++++.+. +-..|.++..+..+...+..++..+++.+.
T Consensus 38 p~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 38 TPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGA 79 (122)
T ss_pred CHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCC
Confidence 4556666655 346788888888999999999999998854
Done!