Query 027009
Match_columns 229
No_of_seqs 133 out of 323
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 94.5 0.099 3.4E-06 46.9 7.7 106 97-206 8-118 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 90.9 0.8 2.7E-05 39.8 8.1 114 94-214 5-126 (263)
3 3ks6_A Glycerophosphoryl diest 87.8 5.4 0.00019 33.6 10.9 67 78-144 84-155 (250)
4 3tzt_A Glycosyl transferase fa 86.1 2.4 8.2E-05 36.5 7.9 118 96-216 8-137 (276)
5 1g9r_A Glycosyl transferase; a 85.2 2.2 7.7E-05 37.1 7.3 117 96-215 3-131 (311)
6 2pz0_A Glycerophosphoryl diest 81.1 23 0.00078 29.6 12.3 67 78-144 98-167 (252)
7 3no3_A Glycerophosphodiester p 76.4 31 0.0011 28.6 11.2 67 78-144 81-153 (238)
8 3l12_A Putative glycerophospho 70.0 53 0.0018 28.3 13.1 66 78-143 125-202 (313)
9 2oog_A Glycerophosphoryl diest 64.9 64 0.0022 27.3 11.4 66 78-143 119-192 (287)
10 2c0n_A A197; thermophil protei 61.2 6.7 0.00023 33.2 3.6 46 168-213 37-88 (203)
11 3ch0_A Glycerophosphodiester p 60.7 72 0.0025 26.5 11.1 67 78-144 113-191 (272)
12 3mz2_A Glycerophosphoryl diest 56.4 30 0.001 29.9 7.2 63 78-144 118-180 (292)
13 3qvq_A Phosphodiesterase OLEI0 53.8 94 0.0032 25.7 13.2 66 78-143 96-165 (252)
14 3ioh_A Histo-blood group ABO s 53.5 28 0.00094 31.0 6.5 104 84-198 47-163 (298)
15 1o7q_A N-acetyllactosaminide a 49.5 62 0.0021 28.6 8.0 94 94-198 50-154 (289)
16 1vd6_A Glycerophosphoryl diest 48.0 1.1E+02 0.0037 24.8 11.5 63 78-143 78-144 (224)
17 2o55_A Putative glycerophospho 45.0 45 0.0015 27.7 6.3 67 78-144 91-164 (258)
18 1fo8_A Alpha-1,3-mannosyl-glyc 40.4 50 0.0017 29.5 6.1 109 94-205 5-122 (343)
19 3l9k_W Dynein intermediate cha 38.3 13 0.00046 23.2 1.4 30 158-187 8-37 (38)
20 3bcv_A Putative glycosyltransf 33.3 1E+02 0.0035 24.0 6.5 100 94-212 8-119 (240)
21 1t35_A Hypothetical protein YV 33.0 1E+02 0.0035 25.0 6.4 57 81-138 110-177 (191)
22 1b4b_A Arginine repressor; cor 31.5 72 0.0025 21.8 4.6 57 83-139 3-65 (71)
23 1wek_A Hypothetical protein TT 26.8 1E+02 0.0034 25.7 5.4 57 80-138 143-211 (217)
24 3qua_A Putative uncharacterize 25.0 85 0.0029 25.9 4.6 52 80-132 129-190 (199)
25 3sbx_A Putative uncharacterize 24.7 92 0.0031 25.5 4.7 53 80-133 120-182 (189)
26 2l0l_A Oxidoreductase THAT cat 24.3 8.4 0.00029 22.1 -1.2 25 32-58 1-25 (27)
27 2p5m_A Arginine repressor; alp 22.3 94 0.0032 21.8 3.8 59 81-139 9-77 (83)
28 2otd_A Glycerophosphodiester p 20.6 3.4E+02 0.012 22.0 12.4 66 78-143 93-162 (247)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=94.46 E-value=0.099 Score=46.89 Aligned_cols=106 Identities=8% Similarity=0.048 Sum_probs=61.2
Q ss_pred EEEeCcchHHHHHHHHHHhhhccCCCcEEEEEec---HHHHHHHhcCCCceeEecCCCCC-CcccccccchhHHHHHhhh
Q 027009 97 VCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPD-SQTAHKFGSQGFFNFTSRR 172 (229)
Q Consensus 97 Vt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD---~~t~~~~~~~~pg~~vl~~~~~d-~~~~~~~gs~~F~~m~~~K 172 (229)
+.++|.+|+.-+.--+.|+++.+-...++|+..| ++..+.+++.... ......... ...............++.|
T Consensus 8 t~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~-v~~v~~l~~~~~~~~~~~~~~~~~~t~~K 86 (333)
T 1ll2_A 8 TLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE-VITVDILDSGDSAHLTLMKRPELGVTLTK 86 (333)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSE-EEECCTTSTTSTTHHHHHHCGGGHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCE-EEEEeecCCcchhhcccccccchHHHHHH
Confidence 3346899999999999999887656666666554 4555666654221 111111110 0010000001111344555
Q ss_pred hHHHHHHHHcCC-cEEEeecceeeecCCccccCCC
Q 027009 173 PCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD 206 (229)
Q Consensus 173 ~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~ 206 (229)
..+.. + ..| .|||.|+|++.++|+-+.|.-+
T Consensus 87 l~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~ 118 (333)
T 1ll2_A 87 LHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE 118 (333)
T ss_dssp GGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC
T ss_pred HHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC
Confidence 54443 2 345 4999999999999999988754
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=90.87 E-value=0.8 Score=39.80 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=65.9
Q ss_pred eEEEEE-eCcchHHHHHHHHHHhhhccCCCcEEEEEe---cHHHHHHHhcCCCceeEecCCCCCCcc--cc-cccchhHH
Q 027009 94 TIIVCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAE---DYATLYKVNGRWPGHAVLVPPAPDSQT--AH-KFGSQGFF 166 (229)
Q Consensus 94 tVIVt~-~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAl---D~~t~~~~~~~~pg~~vl~~~~~d~~~--~~-~~gs~~F~ 166 (229)
...||. +|.+|+.-+.--+.|+++.+-...++|+.. +++..+.+++.. +.+..-+..+... .. ..+...|
T Consensus 5 ~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~--~~vi~V~~l~~~~~~~~~~~~rp~~- 81 (263)
T 3u2u_A 5 QAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVF--DEVIMVDVLDSGDSAHLTLMKRPEL- 81 (263)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHS--SEEEECCCCCCCCHHHHHHTTCTTG-
T ss_pred eEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcC--CeEEEeeecCCcchhhhhhhcCcch-
Confidence 344444 588999999999999998765555655543 345566666542 2222111111110 00 0111222
Q ss_pred HHHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccCCCCceEEecc
Q 027009 167 NFTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGDHDVYFTDD 214 (229)
Q Consensus 167 ~m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~~~aDi~~~sD 214 (229)
..++.|..+.. ++ .|+ |+|.|+|++.++|.-+.|..+ .+....|
T Consensus 82 ~~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d 126 (263)
T 3u2u_A 82 GVTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPD 126 (263)
T ss_dssp GGGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEEC
T ss_pred hHHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEecc
Confidence 34555655443 22 464 999999999999998888765 3444344
No 3
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=87.77 E-value=5.4 Score=33.59 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCc-----chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQ-----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~-----ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+.++|+|+|+.+...+..+..=.-. .+..+.+.-++-+++.+..+++++...|.++++++++..|..
T Consensus 84 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~SF~~~~l~~~~~~~p~~ 155 (250)
T 3ks6_A 84 HPMTLEELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRP 155 (250)
T ss_dssp CCEEHHHHHHHHTTCSCEEEEEECCCTTSCCCTTHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCCSC
T ss_pred cCcCHHHHHHHHhccCcEEEEEeCCCcccCcchHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCC
Confidence 5789999999987444333322211 234566666666777777889999999999999998876763
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=86.11 E-value=2.4 Score=36.54 Aligned_cols=118 Identities=13% Similarity=0.064 Sum_probs=61.6
Q ss_pred EEEEeCcchHHHHHHHHHHhhhccCCCcE--EEEEec--HHHHHHHhcC--CCceeE-ecC-CCCCCcccccccchhHHH
Q 027009 96 IVCAVSQPYLPFLNNWLISISRQKHQDQV--LVIAED--YATLYKVNGR--WPGHAV-LVP-PAPDSQTAHKFGSQGFFN 167 (229)
Q Consensus 96 IVt~~N~ay~dfl~Nwl~sl~r~g~~~nv--LVvAlD--~~t~~~~~~~--~pg~~v-l~~-~~~d~~~~~~~gs~~F~~ 167 (229)
|+.++|..|...+..-+.|+.+.+-..++ .|+..| ++..+.+.+. ..++.+ +.. ........ -.+..|..
T Consensus 8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~s~ 85 (276)
T 3tzt_A 8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFA--KVTDRYPK 85 (276)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC---------------CH
T ss_pred EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcC--ccccccCH
Confidence 67889999999999999999776432333 344433 4444444432 123322 111 10000000 00111222
Q ss_pred HHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC---CCceEEeccCc
Q 027009 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMA 216 (229)
Q Consensus 168 m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~---~aDi~~~sD~~ 216 (229)
.+..|. ++-+++...+ .|||.|+|++.++|.-+.+.- +.-+.+..|+.
T Consensus 86 ~~~~rl-~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~ 137 (276)
T 3tzt_A 86 EMYYRL-LAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTG 137 (276)
T ss_dssp HHHHHH-THHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--
T ss_pred HHHHHH-HHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecc
Confidence 222332 2334554455 599999999999999988874 33455555643
No 5
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=85.17 E-value=2.2 Score=37.10 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=62.6
Q ss_pred EEEEeCcchHHHHHHHHHHh-hhcc-CCCcEEEEEec--HHHHHHHhcCCC--cee-EecC-CCCCCcccccccchhHHH
Q 027009 96 IVCAVSQPYLPFLNNWLISI-SRQK-HQDQVLVIAED--YATLYKVNGRWP--GHA-VLVP-PAPDSQTAHKFGSQGFFN 167 (229)
Q Consensus 96 IVt~~N~ay~dfl~Nwl~sl-~r~g-~~~nvLVvAlD--~~t~~~~~~~~p--g~~-vl~~-~~~d~~~~~~~gs~~F~~ 167 (229)
|+.++|..|+..+...+.|+ .+.. ..-++.|++.| ++..+.+.+... ++. .+.. .......... ....+..
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~s~ 81 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPL-NIRHISI 81 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCC-CCTTCCG
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCcc-ccccCCH
Confidence 56778999999999999999 4332 22244555544 555555654211 221 1111 0000000000 0011112
Q ss_pred HHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC---CCceEEeccC
Q 027009 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDM 215 (229)
Q Consensus 168 m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~---~aDi~~~sD~ 215 (229)
.+..|.. +-+++. .+ .|||.|+|+|-++|.-+.+.- +.-+.+..|+
T Consensus 82 ~~y~Rl~-l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~ 131 (311)
T 1g9r_A 82 TTYARLK-LGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDL 131 (311)
T ss_dssp GGGGGGG-HHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECH
T ss_pred HHHHHHH-HHHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEecc
Confidence 3334443 344453 44 499999999999999888864 3445544554
No 6
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=81.11 E-value=23 Score=29.56 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=45.7
Q ss_pred CCchHHHHHHhhccCCe-EEEEEeCc--chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~N~--ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+-++|+|+|+.+...+. +.+=.=+. .+..+...-++-+++.+..+++++...|.++.+++++..|..
T Consensus 98 ~iPtL~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~ 167 (252)
T 2pz0_A 98 RIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHL 167 (252)
T ss_dssp CCCBHHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTS
T ss_pred cCCCHHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCC
Confidence 46899999998865443 33322221 233455555666666677788999999999999998866663
No 7
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=76.43 E-value=31 Score=28.62 Aligned_cols=67 Identities=15% Similarity=-0.035 Sum_probs=48.0
Q ss_pred CCchHHHHHHhhccC-C-eEEEEEeCcc----hHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKN-G-TIIVCAVSQP----YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n-~-tVIVt~~N~a----y~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+.++|+|+|+.+... + .+++=.=... +..+.+.-+.-+++.+..+++++...|.+++.++++..|..
T Consensus 81 ~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~ 153 (238)
T 3no3_A 81 KLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDACKEFIRLCPKS 153 (238)
T ss_dssp BCCBHHHHHHHHHHCTTCEEEEEECCCSSHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTS
T ss_pred cCCcHHHHHHHHhhcCCceEEEEeCCCCCcchhHHHHHHHHHHHHHcCCcCCEEEEECCHHHHHHHHHHCCCC
Confidence 568999999998754 3 3333332222 23466666677777777889999999999999999877763
No 8
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=70.05 E-value=53 Score=28.27 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCchHHHHHHhhccC---C-eEEEEEeCcch--------HHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKN---G-TIIVCAVSQPY--------LPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n---~-tVIVt~~N~ay--------~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+|+.+... + .+.+=.=+... .++.+.-+.-+++.+..++++|...|.++++++++..|.
T Consensus 125 ~iptL~evl~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~ 202 (313)
T 3l12_A 125 HVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVLADVRRYRMEPRTVMHSFDWALLGECRRQAPD 202 (313)
T ss_dssp CCCBHHHHHHHHHTTGGGCCEEEEEECCCGGGTTCHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTT
T ss_pred cCCCHHHHHHHHHhcCCCCceEEEEEccCCccccccccHHHHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCC
Confidence 468999999998752 3 33333222221 346666677777777788999999999999999886666
No 9
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=64.89 E-value=64 Score=27.31 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=44.1
Q ss_pred CCchHHHHHHhhccCCeEEEEEe-CcchHHHHHHHHHHhhhccC-------CCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAV-SQPYLPFLNNWLISISRQKH-------QDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~-N~ay~dfl~Nwl~sl~r~g~-------~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+-++|+|+|+....+-.+.+=.= ...+..+....+.-+++.+. .++++|.+.|.++++++++..|.
T Consensus 119 ~iPtL~evL~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p~ 192 (287)
T 2oog_A 119 KVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKH 192 (287)
T ss_dssp CCCBHHHHHHHHCTTSCEEEECCCTTTSTTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCTT
T ss_pred cCCCHHHHHHhhCcCceEEEEECCCCCcchHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCCC
Confidence 46899999998764333333221 11233355556666666665 68899999999999999876565
No 10
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=61.24 E-value=6.7 Score=33.19 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHhhhhHHHHHHHH-cCCc-EEEeecceeeecCCcccc----CCCCceEEec
Q 027009 168 FTSRRPCHLLHILE-LGYN-VMYNDVDMVWLKDPFPYL----QGDHDVYFTD 213 (229)
Q Consensus 168 m~~~K~~~l~~vLe-lGy~-VL~sDvDvVWLrDP~p~f----~~~aDi~~~s 213 (229)
+.+.|..++.++++ .||+ +++.|+|+|=+.=+-..+ ..++||++.+
T Consensus 37 I~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~g~DVV~Gs 88 (203)
T 2c0n_A 37 VAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNEGYDVVCGY 88 (203)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhCCCCEEEEE
Confidence 55778899999887 6887 889999966554444333 3589999754
No 11
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=60.67 E-value=72 Score=26.52 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=46.5
Q ss_pred CCchHHHHHHhhcc-C-Ce-EEEEEeCcc---------hHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAK-N-GT-IIVCAVSQP---------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~-n-~t-VIVt~~N~a---------y~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+-++|+|+|+.+.. + +. +.+=.=+.. ...+...-+.-+++.+..+++++...|.++++++++..|..
T Consensus 113 ~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~ 191 (272)
T 3ch0_A 113 VKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITDRFTLQSFDVRALEYMHSQYPDI 191 (272)
T ss_dssp CCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTTBCCHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTS
T ss_pred CCcCHHHHHHHHHHhCCCceEEEEECCCcCcccccCccHHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHHCCCC
Confidence 57899999998874 2 33 333322222 12456666666777777889999999999999998866653
No 12
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=56.42 E-value=30 Score=29.89 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=42.2
Q ss_pred CCchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+.++|+|+|+.+..+-.+.+= ...... +.-+.-+++.+..+++++...|.+...++.+..|..
T Consensus 118 ~iptL~evl~~~~~~~~l~iE-~K~~~~---~~v~~~l~~~~~~~~vii~Sf~~~~l~~~~~~~p~~ 180 (292)
T 3mz2_A 118 RIPTLEEAIRWARGKTILILD-KKDVPM---ERTAQLITDMQAEPYVMITVHDGASARFFYEKNPNF 180 (292)
T ss_dssp CCCBHHHHHHHHTTTCCEEEC-CSSSCH---HHHHHHHHHTTCTTTEEEEESSHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHhCCCcEEEEE-ECCCcH---HHHHHHHHHcCCCCCEEEEECCHHHHHHHHHHCCCC
Confidence 578999999976533223332 222212 333445666677899999999999999998876763
No 13
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=53.79 E-value=94 Score=25.73 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=41.3
Q ss_pred CCchHHHHHHhhccCC-eEEEEEeCc--chHHHHHHHHHHhhhccC-CCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNG-TIIVCAVSQ--PYLPFLNNWLISISRQKH-QDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~-tVIVt~~N~--ay~dfl~Nwl~sl~r~g~-~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+-++|+|+|+.+...+ .+.+=.=.. ....+.+--..-+++.+. .+++++...|.+++.++++..|.
T Consensus 96 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~vii~SF~~~~l~~~~~~~p~ 165 (252)
T 3qvq_A 96 TIPTLLEAIEVISQYGMGLNLELKPCEGLEEETIAASVEVLKQHWPQDLPLLFSSFNYFALVSAKALWPE 165 (252)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHSCTTSCEEEEESCHHHHHHHHHHCTT
T ss_pred cCcCHHHHHHHHhccCcEEEEEecCCCCccHHHHHHHHHHHHHhCcccCCEEEEeCCHHHHHHHHHHCCC
Confidence 5689999999887444 333333222 122233333333444433 25799999999999999886666
No 14
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=53.51 E-value=28 Score=31.04 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=61.1
Q ss_pred HHHHhhc--cCCeE-EEEEeCcchHHHHHHHHHHhhh---ccCCCcEEEEEecHHHHHHHhcCCCcee--EecCCCCCCc
Q 027009 84 QAASFVA--KNGTI-IVCAVSQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPPAPDSQ 155 (229)
Q Consensus 84 ~lL~~vA--~n~tV-IVt~~N~ay~dfl~Nwl~sl~r---~g~~~nvLVvAlD~~t~~~~~~~~pg~~--vl~~~~~d~~ 155 (229)
++|++.- .|=|| ++.++-..|..|++.|++|..+ .|...++.|.+.+.+..-... .-|+.. ++.-.
T Consensus 47 ~il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~vP~v~-l~~~r~~~V~~v~----- 120 (298)
T 3ioh_A 47 DILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRVT-LGTGRQLSVLEVR----- 120 (298)
T ss_dssp HHHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGGSCCCC-CCTTEEEEEEECC-----
T ss_pred HHHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhhCCccc-cCCCCeEEEEEec-----
Confidence 3455544 23344 4456667788999999999988 455667777776655321111 113322 22100
Q ss_pred ccccccchhHHHHHhhhhHHHHHHHH----cCCc-EEEeecceeeecC
Q 027009 156 TAHKFGSQGFFNFTSRRPCHLLHILE----LGYN-VMYNDVDMVWLKD 198 (229)
Q Consensus 156 ~~~~~gs~~F~~m~~~K~~~l~~vLe----lGy~-VL~sDvDvVWLrD 198 (229)
....|......|.+.+.+..+ .-.| +.+.|+|+++..+
T Consensus 121 -----~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~ 163 (298)
T 3ioh_A 121 -----AYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 163 (298)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSC
T ss_pred -----cccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccC
Confidence 233466667777777766554 3345 6678999998654
No 15
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=49.50 E-value=62 Score=28.64 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=58.1
Q ss_pred eEEEEEeCcchH-HHHHHHHHHhhh---ccCCCcEEEEEecHHHHHHHhcCCCcee--EecCCCCCCcccccccchhHHH
Q 027009 94 TIIVCAVSQPYL-PFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPPAPDSQTAHKFGSQGFFN 167 (229)
Q Consensus 94 tVIVt~~N~ay~-dfl~Nwl~sl~r---~g~~~nvLVvAlD~~t~~~~~~~~pg~~--vl~~~~~d~~~~~~~gs~~F~~ 167 (229)
.=++.++-..|. .|++-|++|..+ .|...++.|.+-+.+..-... ..|+.. ++. ....+.|..
T Consensus 50 IGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p~v~-l~~~r~~~V~~----------i~~~~~W~d 118 (289)
T 1o7q_A 50 VGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIE-LGPLRSFKVFK----------IKPEKRWQD 118 (289)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCC-CCTTEEEEEEE----------CCCCSSHHH
T ss_pred EEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCCccc-cCCCCeEEEEE----------eccccCCch
Confidence 335556777899 899999999988 355667777777665422111 122321 211 012233777
Q ss_pred HHhhhhHHHHHHHHc----CCc-EEEeecceeeecC
Q 027009 168 FTSRRPCHLLHILEL----GYN-VMYNDVDMVWLKD 198 (229)
Q Consensus 168 m~~~K~~~l~~vLel----Gy~-VL~sDvDvVWLrD 198 (229)
.+.+|.+.+.+..+. ..| +.+.|||+++..+
T Consensus 119 ~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~ 154 (289)
T 1o7q_A 119 ISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 154 (289)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred hHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeecc
Confidence 777887877776522 345 6678999998663
No 16
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=47.97 E-value=1.1e+02 Score=24.78 Aligned_cols=63 Identities=14% Similarity=-0.021 Sum_probs=41.7
Q ss_pred CCchHHHHHHhhc-cCCe-EEEEEeC--cchHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVA-KNGT-IIVCAVS--QPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA-~n~t-VIVt~~N--~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+-++|+|+|+.+. ..+. +.+=.=. ..+..+...-+.-+++ .+++++...|.++..++++..|.
T Consensus 78 ~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~---~~~v~i~Sf~~~~l~~~~~~~p~ 144 (224)
T 1vd6_A 78 DLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG---REGVWVSSFDPLALLALRKAAPG 144 (224)
T ss_dssp TCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT---CSSEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHCCC
Confidence 5689999999887 4444 3332222 1223355555555555 57899999999999999886665
No 17
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=45.03 E-value=45 Score=27.71 Aligned_cols=67 Identities=9% Similarity=-0.003 Sum_probs=46.2
Q ss_pred CCchHHHHHHhhccC--Ce-EEEEEeCc----chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009 78 RDYTLSQAASFVAKN--GT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n--~t-VIVt~~N~----ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~ 144 (229)
+-++|+|+|+.+... +. +.+=.=.. .+..+...-+.-+++.+..+++++...|.+.+.++++..|..
T Consensus 91 ~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~ 164 (258)
T 2o55_A 91 TIPSLEELFVAIEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHMQERVDYCSFHHEALAHLKALCPDV 164 (258)
T ss_dssp BCCBHHHHHHHHHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTCGGGEEEEESSHHHHHHHHHHCTTC
T ss_pred ccCCHHHHHHHhhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCCCCCEEEEeCCHHHHHHHHHHCCCC
Confidence 568999999988743 43 33332221 123455556666677677789999999999999998866764
No 18
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=40.37 E-value=50 Score=29.49 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=67.3
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhccC--CCcEEEEEecHH---HHHHHhcC-CCc-eeEecCCCCCCcccccccchhHH
Q 027009 94 TIIVCAVSQPYLPFLNNWLISISRQKH--QDQVLVIAEDYA---TLYKVNGR-WPG-HAVLVPPAPDSQTAHKFGSQGFF 166 (229)
Q Consensus 94 tVIVt~~N~ay~dfl~Nwl~sl~r~g~--~~nvLVvAlD~~---t~~~~~~~-~pg-~~vl~~~~~d~~~~~~~gs~~F~ 166 (229)
.|+|.+.|.. + +..-++++.+... ....+|++-|-. +.+.+++- .+- +....+.+.-...+...|-++|.
T Consensus 5 pViI~~yNRp--~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~ 81 (343)
T 1fo8_A 5 PILVIACDRS--T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CEEEEESSCT--T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred cEEEEECCcH--H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccch
Confidence 5889999998 5 7888888877632 234577777754 44433331 010 11111111101122334556677
Q ss_pred HHHhhhhHHHHHHHH--cCCcEEEeecceeeecCCccccCC
Q 027009 167 NFTSRRPCHLLHILE--LGYNVMYNDVDMVWLKDPFPYLQG 205 (229)
Q Consensus 167 ~m~~~K~~~l~~vLe--lGy~VL~sDvDvVWLrDP~p~f~~ 205 (229)
++-..-...+..+.+ .+=.|++.|=|++.=.|-+.||..
T Consensus 82 ~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 666666667777766 566799999999999999988863
No 19
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=38.35 E-value=13 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=26.1
Q ss_pred ccccchhHHHHHhhhhHHHHHHHHcCCcEE
Q 027009 158 HKFGSQGFFNFTSRRPCHLLHILELGYNVM 187 (229)
Q Consensus 158 ~~~gs~~F~~m~~~K~~~l~~vLelGy~VL 187 (229)
....|.+|..+.-+..+++.+-|.-.||++
T Consensus 8 ~I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 8 MIILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 345788999999999999999999998864
No 20
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=33.32 E-value=1e+02 Score=24.02 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=50.0
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhccCCCcE-EEEEec---HHHHHHHhc---CCCceeEecCCCCCCcccccccchhHH
Q 027009 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQV-LVIAED---YATLYKVNG---RWPGHAVLVPPAPDSQTAHKFGSQGFF 166 (229)
Q Consensus 94 tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~nv-LVvAlD---~~t~~~~~~---~~pg~~vl~~~~~d~~~~~~~gs~~F~ 166 (229)
.||+.+-|.+ +++..-++|+.+.. ..++ +|+.-| +++.+.+++ ..|...++..+..+.+
T Consensus 8 sViIp~yn~~--~~l~~~l~Sl~~q~-~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~~----------- 73 (240)
T 3bcv_A 8 SVIVPIYNVE--KYLDQCVQALLAQT-LSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG----------- 73 (240)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCS-SSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCHH-----------
T ss_pred EEEEecCCCH--HHHHHHHHHHHhCc-CCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECCCCChH-----------
Confidence 4566666654 67888888887753 3343 333333 234444443 3454444432211111
Q ss_pred HHHhhhhHHHHHHHHcCCcEEEeecceeeecCCccccC----C-CCceEEe
Q 027009 167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQ----G-DHDVYFT 212 (229)
Q Consensus 167 ~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrDP~p~f~----~-~aDi~~~ 212 (229)
..|..-+. ...|=-|++.|.|.+|-.|=+..+. . ++|+.+.
T Consensus 74 ---~a~N~g~~--~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 74 ---MACNSGLD--VATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp ---HHHHHHHH--HCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred ---HHHHHHHH--HcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 11111222 1256668888999887544443332 2 5676643
No 21
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=32.96 E-value=1e+02 Score=24.99 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=37.8
Q ss_pred hHHHHHHhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhccCCC----cEEEEEecHHH-HHHHh
Q 027009 81 TLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKHQD----QVLVIAEDYAT-LYKVN 138 (229)
Q Consensus 81 ~L~~lL~~vA------~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~----nvLVvAlD~~t-~~~~~ 138 (229)
||+|+.+-.+ .++.|++.-.| +|.+=+.+|+.++...|.++ +.+.++.|.+. .+.+.
T Consensus 110 Tl~El~e~lt~~q~g~~~kPvvll~~~-g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~ 177 (191)
T 1t35_A 110 TYEELFEVLCWAQIGIHQKPIGLYNVN-GYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQ 177 (191)
T ss_dssp HHHHHHHHHHTTSCSSCCCCEEEECGG-GTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEecCC-cccchHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHH
Confidence 7888877764 56777776332 67777788988877765433 36677777663 44444
No 22
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=31.50 E-value=72 Score=21.80 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhh------ccCCCcEEEEEecHHHHHHHhc
Q 027009 83 SQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISR------QKHQDQVLVIAEDYATLYKVNG 139 (229)
Q Consensus 83 ~~lL~~vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r------~g~~~nvLVvAlD~~t~~~~~~ 139 (229)
++.+-.+..++..+|--+--++...+-+.+.++.. ..+.+.++|++.|++.-+.+.+
T Consensus 3 ~~~v~si~~~~n~vVikT~pG~A~~va~~iD~~~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~ 65 (71)
T 1b4b_A 3 VDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSN 65 (71)
T ss_dssp HHHEEEEEEETTEEEEEESTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred hHhEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEEEEEECCHHHHHHHHH
Confidence 34444455566667777778999999999988764 2348999999999998877765
No 23
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=26.76 E-value=1e+02 Score=25.70 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred chHHHHHHhhc-------cCCeEEEEEeCcchHHHHHHHHHHhhhccC----CCcEEEEEecHH-HHHHHh
Q 027009 80 YTLSQAASFVA-------KNGTIIVCAVSQPYLPFLNNWLISISRQKH----QDQVLVIAEDYA-TLYKVN 138 (229)
Q Consensus 80 ~~L~~lL~~vA-------~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~----~~nvLVvAlD~~-t~~~~~ 138 (229)
=||+|+.+-.. .++.|++. |.+|.+=+.+|+.++...|. ..+.++++.|.+ +.+.+.
T Consensus 143 GTL~El~e~lt~~qlg~~~~kPvvll--~~~~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~ 211 (217)
T 1wek_A 143 GTLDELSEVLVLLQTEKVHRFPVFLL--DRGYWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPEEVVQALK 211 (217)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCEEEE--CHHHHHHHHHHHHHHHHTTSSCTTGGGGSEEESCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCCCCEEEe--CcccchhHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHH
Confidence 37777766655 35777765 55688888899988766543 234556777766 344444
No 24
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=25.03 E-value=85 Score=25.89 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=35.1
Q ss_pred chHHHHHHhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhccCCC----cEEEEEecHH
Q 027009 80 YTLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKHQD----QVLVIAEDYA 132 (229)
Q Consensus 80 ~~L~~lL~~vA------~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~----nvLVvAlD~~ 132 (229)
=||+|+.+-.+ .++.|++.-.| +|.+=+.+|+.++...|.++ +.+.++.|.+
T Consensus 129 GTldEl~e~lt~~qlg~~~kPvvlln~~-gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~~ 190 (199)
T 3qua_A 129 GTLEEFFEAWTAGYLGMHDKPLILLDPF-GHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVE 190 (199)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCEEEECTT-STTHHHHHHHHHTTTTTSSCHHHHHTSEEESSHH
T ss_pred cHHHHHHHHHHHHHhccCCCCEEEEcCC-ccchHHHHHHHHHHHCCCCCHHHCCeEEEeCCHH
Confidence 47777766544 46788776555 57777789998876665532 5566777765
No 25
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=24.70 E-value=92 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=36.1
Q ss_pred chHHHHHHhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhccCCC----cEEEEEecHHH
Q 027009 80 YTLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKHQD----QVLVIAEDYAT 133 (229)
Q Consensus 80 ~~L~~lL~~vA------~n~tVIVt~~N~ay~dfl~Nwl~sl~r~g~~~----nvLVvAlD~~t 133 (229)
=||+|+.+-.+ .++.|++.-.| +|.+=+..|+.++...|.++ +.+.++.|.+.
T Consensus 120 GTLdElfe~lt~~qlg~~~kPvvlln~~-gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee 182 (189)
T 3sbx_A 120 GTLDELLDVWTEGYLGMHDKSIVVLDPW-GHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDD 182 (189)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCEEEECTT-CTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHH
T ss_pred chHHHHHHHHHHHHhcccCCCEEEecCC-ccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHH
Confidence 47788766543 56788876444 67777789998877665543 56777877763
No 26
>2l0l_A Oxidoreductase THAT catalyzes reoxidation of DSBA disulfide isomerase I; DSBB, membrane protein, organic solvent, folding; NMR {Escherichia coli BW2952} PDB: 2l0m_A
Probab=24.29 E-value=8.4 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=14.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhhhcc
Q 027009 32 RPMLLVLNRTTLLVLLSLLVVLGVILP 58 (229)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (229)
+|+ |++-|..+ +.++++-++|.+.|
T Consensus 1 ~pL-CI~QR~a~-~~i~~~~li~~~~P 25 (27)
T 2l0l_A 1 KKL-SIYERVAL-FGVLGAALIGAIAP 25 (27)
T ss_dssp CCC-SSSSHHHH-HHHSSTTTTTTTCC
T ss_pred CCc-hHHHHHHH-HHHHHHHHHHHhcC
Confidence 466 99999444 45555555554433
No 27
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=22.30 E-value=94 Score=21.84 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=43.4
Q ss_pred hHHHHHHh----hccCCeEEEEEeCcchHHHHHHHHHHhhh------ccCCCcEEEEEecHHHHHHHhc
Q 027009 81 TLSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISR------QKHQDQVLVIAEDYATLYKVNG 139 (229)
Q Consensus 81 ~L~~lL~~----vA~n~tVIVt~~N~ay~dfl~Nwl~sl~r------~g~~~nvLVvAlD~~t~~~~~~ 139 (229)
+|+.+++. +...+..+|--+--+++..+-+.+.++.. ..+.+.++|++-|.+..+.+.+
T Consensus 9 ~l~~~~~~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~ 77 (83)
T 2p5m_A 9 KLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKN 77 (83)
T ss_dssp HHHHHHHHHEEEEEEETTEEEEEESTTCHHHHHHHHHTTTCTTCCEEEECSSEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHH
Confidence 35455544 33566677777778999999999988754 2348999999999998877765
No 28
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=20.58 E-value=3.4e+02 Score=21.96 Aligned_cols=66 Identities=12% Similarity=-0.069 Sum_probs=41.1
Q ss_pred CCchHHHHHHhhccCCe-EEEEEeCcc--hHHHHHHHHHHhhhc-cCCCcEEEEEecHHHHHHHhcCCCc
Q 027009 78 RDYTLSQAASFVAKNGT-IIVCAVSQP--YLPFLNNWLISISRQ-KHQDQVLVIAEDYATLYKVNGRWPG 143 (229)
Q Consensus 78 ~~~~L~~lL~~vA~n~t-VIVt~~N~a--y~dfl~Nwl~sl~r~-g~~~nvLVvAlD~~t~~~~~~~~pg 143 (229)
+.++|+|+|+.+...+. +.+=.=+.. +..+.+..+.-+++. ....++++...|.+.+.++++..|.
T Consensus 93 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~ 162 (247)
T 2otd_A 93 PLPLLSQVAERCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQQAAPE 162 (247)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHTTTSCCCEEEESCHHHHHHHHHHCTT
T ss_pred cCCCHHHHHHHHHhcCCEEEEEECCCCCcchHHHHHHHHHHHHHhcCcCCEEEEcCCHHHHHHHHHHCCC
Confidence 46899999998874443 333322221 223444444445443 1233899999999999999886665
Done!