BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027011
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1 OS=Danio rerio GN=ubxn1 PE=2 SV=1
Length = 294
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG--GGASK 175
L L MGF RA +A+ ++GN +E A++W++EHENDPDIDE P VP +G G A +
Sbjct: 7 LDSLLEMGFGRNRAEKAVAHTGNQGIERAMDWLMEHENDPDIDE-PYVPPAGNTLGPAEE 65
Query: 176 SSLTPEEI 183
S +P EI
Sbjct: 66 QSQSPTEI 73
>sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=2
SV=2
Length = 297
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+S
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLS 57
>sp|Q922Y1|UBXN1_MOUSE UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1
Length = 297
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+S
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLS 57
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
P +D+ ++ +L MGFP+ +A++Y+GN+ EAA+NWV+ H +DPD ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712
Query: 171 GGASKSSLTP 180
G++ ++ P
Sbjct: 713 PGSTSAAADP 722
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
P +D+ ++ +L MGFP+ +A++Y+GN+ EAA+NWV+ H +DPD ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712
Query: 171 GGASKSSLTP 180
G++ ++ P
Sbjct: 713 PGSTSAAADP 722
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
P +D+ ++ +L MGFP+ +A++Y+GN+ EAA+NWV+ H +DPD ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712
Query: 171 GGASKSSLTP 180
G++ ++ P
Sbjct: 713 PGSTSAAADP 722
>sp|Q04323|UBXN1_HUMAN UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1 PE=1 SV=2
Length = 297
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPL 56
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 105 PEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
PE+ E ++ +++L+AMGFP+ R RAL +GN++ E A+NW+ EH DP+ID+
Sbjct: 569 PEKTETIEWNQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEIDK 625
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 106 EEMVEPEVDK-----ELL------------KELEAMGFPVARATRALHYSGNANVEAAVN 148
E M +PE+DK ELL + L GF VA+A + L S N N+E AV+
Sbjct: 616 EHMEDPEIDKPIEVSELLPKADSSVSEENVQSLCEFGFTVAQARKGLLESNN-NIERAVD 674
Query: 149 WVVEHENDPDIDEMPM 164
W++ H D +E P+
Sbjct: 675 WILNHP-DESFEEPPL 689
>sp|Q32KW2|UBXN1_BOVIN UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1
Length = 297
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE
Sbjct: 7 LESLIEMGFPKGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDE 50
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
++++P ++D+ + +L MGFP+ +A++++GN E A NW++ H +PD E +
Sbjct: 644 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAI 703
Query: 166 PVSGGGGASKSSLT------PEEI 183
P GG GAS T PEEI
Sbjct: 704 PGYGGAGASVFGATGLDNQPPEEI 727
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGG 171
++D+ + +L MGFP+ +A++Y+GN E A NW++ H +PD E +VPV GG
Sbjct: 647 DIDESSVMQLAEMGFPLEACRKAVYYTGNLGAEVAFNWIIAHMEEPDFAEPLVVPVFGGA 706
Query: 172 GAS 174
+S
Sbjct: 707 ASS 709
>sp|Q6IP50|UBX1A_XENLA UBX domain-containing protein 1-A OS=Xenopus laevis GN=ubxn1-a PE=2
SV=1
Length = 296
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
L+ L MGF RA +AL +GN +E A++W+VEHE+DPDIDE P V V G
Sbjct: 7 LESLIEMGFSSTRAEKALTATGNQGIEPAMDWLVEHEDDPDIDE-PSVVVPEG 58
>sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2
SV=1
Length = 287
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
L+ L MGF +RA +AL +GN +E A++W+VEHE+DPDIDE +V
Sbjct: 7 LESLIEMGFSPSRAEKALAATGNQGIEPAMDWLVEHEDDPDIDEPSVV 54
>sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum
GN=ubpA PE=2 SV=2
Length = 837
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
EP ++E+L L +M FP+ R +AL +G + E A+NW+ EH DPDID
Sbjct: 626 EPSFNQEVLDTLLSMDFPLVRCKKALLATGGKDAELAMNWIFEHTEDPDID 676
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 59 DLHRKR-TGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKEL 117
DL+R R TG ++ + PI +P+ T DS S + PE+D+
Sbjct: 593 DLNRLRATGLQAGEEELPDLTPPIV--IPEDTRDS----------STNNSLESPEIDESS 640
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167
+ +L MGFP+ +A++Y+GN E A NW++ H +PD E VP
Sbjct: 641 VMQLAEMGFPLEACRKAVYYTGNMGAEMAFNWIIAHMEEPDFAEPLAVPT 690
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 66 GHTDFVDKTSEAAKPISLE--VPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEA 123
H + D A P +E +P + + A+D +QP E E + L +
Sbjct: 675 AHMEEPDFAEPLAVPTYMESDLPSPSLPTTSALD-----NQPPE--------ESISILTS 721
Query: 124 MGFPVARATRALHYSGNANVEAAVNWVVEH 153
MGFP +AL S N N+E A++W+ H
Sbjct: 722 MGFPRHHTIQALKASNN-NLERALDWIFTH 750
>sp|Q6GLV4|UBX1B_XENLA UBX domain-containing protein 1-B OS=Xenopus laevis GN=ubxn1-b PE=2
SV=1
Length = 290
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
L+ L MGF +RA +AL +GN +E A++W+VEHE+DPDI E
Sbjct: 7 LESLIEMGFSPSRAEKALSATGNQGIEPAMDWLVEHEDDPDIKE 50
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 63 KRTGHTDFVDKTSEAAKPISLE---VPK---ATADSEEAIDVDMSGSQ------------ 104
K TG T F D + +E VPK D + ID+ S+
Sbjct: 542 KTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPGEELLPDG 601
Query: 105 -PEEMVE---PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
PEE++E P ++E++ +L +MGF +A + NA VE A+NW++ H +DPDID
Sbjct: 602 VPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID 661
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
++++P ++D+ + +L MGFP+ +A++++GN E A NW+V H +PD E +
Sbjct: 646 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIVVHMEEPDFAEPLTM 705
Query: 166 P 166
P
Sbjct: 706 P 706
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
++++P ++D+ + +L MGFP+ +A++++GN E A NW++ H +PD E +
Sbjct: 646 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTM 705
Query: 166 P 166
P
Sbjct: 706 P 706
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP 166
+ +L MGF + RAL +GN + E+A+NW+ +H +DPD+++ P VP
Sbjct: 591 ISQLIEMGFTQNASVRALFNTGNQDAESAMNWLFQHMDDPDLND-PFVP 638
>sp|P57075|UBS3A_HUMAN Ubiquitin-associated and SH3 domain-containing protein A OS=Homo
sapiens GN=UBASH3A PE=1 SV=1
Length = 661
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 117 LLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
LL+ L AMGFPV A +AL +G E A+ W+ +H NDP +D+
Sbjct: 24 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDD 68
>sp|Q8TF42|UBS3B_HUMAN Ubiquitin-associated and SH3 domain-containing protein B OS=Homo
sapiens GN=UBASH3B PE=1 SV=2
Length = 649
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
L L +MGFP ARA +AL +G +V+AA +W+ H DP +D+
Sbjct: 41 LDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDD 84
>sp|Q8BGG7|UBS3B_MOUSE Ubiquitin-associated and SH3 domain-containing protein B OS=Mus
musculus GN=Ubash3b PE=1 SV=1
Length = 638
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
L L +MGFP ARA +AL +G +V+AA +W+ H DP +D+
Sbjct: 30 LDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDD 73
>sp|Q3V3E1|UBS3A_MOUSE Ubiquitin-associated and SH3 domain-containing protein A OS=Mus
musculus GN=Ubash3a PE=1 SV=1
Length = 624
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 117 LLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
LL L AMGFP A +AL +G EAA +W+ H NDP +D+
Sbjct: 24 LLDPLLAMGFPTHTALKALAATGRKTAEAAADWLHGHCNDPSLDD 68
>sp|Q9BSL1|UBAC1_HUMAN Ubiquitin-associated domain-containing protein 1 OS=Homo sapiens
GN=UBAC1 PE=1 SV=1
Length = 405
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGG 171
L++L MGFP RAT+AL + + +V A+ W++EH DP ID P+ G
Sbjct: 197 LRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTID----TPLPGQA 245
>sp|Q9VCE9|UBS3A_DROME Protein UBASH3A homolog OS=Drosophila melanogaster GN=CG13604 PE=2
SV=1
Length = 751
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
L+ L MGFP RA +AL +GN V+ A +W++ H ND +DE
Sbjct: 25 LQTLLQMGFPRHRAEKALASTGNRGVQIASDWLLAHVNDGTLDE 68
>sp|Q5XIR9|UBAC1_RAT Ubiquitin-associated domain-containing protein 1 OS=Rattus
norvegicus GN=Ubac1 PE=2 SV=1
Length = 409
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA++AL + + +V A+ W++EH DP ID
Sbjct: 197 LRQLTEMGFPESRASKALRLN-HMSVPQAMEWLIEHSEDPAID 238
>sp|Q8VDI7|UBAC1_MOUSE Ubiquitin-associated domain-containing protein 1 OS=Mus musculus
GN=Ubac1 PE=2 SV=2
Length = 409
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA++AL + + +V A+ W++EH DP ID
Sbjct: 197 LRQLTEMGFPESRASKALRLN-HMSVPQAMEWLIEHSEDPAID 238
>sp|Q5ZJI9|UBAC1_CHICK Ubiquitin-associated domain-containing protein 1 OS=Gallus gallus
GN=UBAC1 PE=2 SV=1
Length = 408
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA +AL + + +V A+ W++EH +DP +D
Sbjct: 197 LRQLTEMGFPESRAVKALRLN-HMSVTQAMEWLIEHADDPAVD 238
>sp|Q28DG7|UBAC1_XENTR Ubiquitin-associated domain-containing protein 1 OS=Xenopus
tropicalis GN=ubac1 PE=2 SV=1
Length = 406
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA +AL + + +V A+ W++EH +DP D
Sbjct: 197 LRQLTEMGFPESRAVKALRLN-HMSVTQAMEWLIEHADDPAAD 238
>sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans
GN=C24G6.8 PE=3 SV=1
Length = 316
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 101 SGSQPEEMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155
+ S P + EP EV+ E L L +GF A AL + +A VE AV W+VE N
Sbjct: 116 TSSHPVDPQEPNEVNNEYLAHLLDLGFDEYTAVLALKRTNSAGVEQAVAWIVERSN 171
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18292 PE=3 SV=1
Length = 358
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSE 35
+L+C DC +L +AQEHA+ T H NF E
Sbjct: 327 TLRCMDCDVMLVGQGQAQEHAKKTGHENFEE 357
>sp|Q8BP97|RHBD3_MOUSE Rhomboid domain-containing protein 3 OS=Mus musculus GN=Rhbdd3 PE=2
SV=1
Length = 385
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 96 IDVDMSGSQPE-EMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152
+DV + GSQ + +P V L++L+ MGFP +A AL +G VE AV+ +VE
Sbjct: 305 LDVSVQGSQSSLWLPKPSVSSLRLQQLQHMGFPTEQAAVALAATG--RVEGAVSLLVE 360
>sp|P73274|SYL_SYNY3 Leucine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=leuS PE=3 SV=1
Length = 869
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 6 LKCGDCGALLRSVQEAQEHAELTSHSNFS-------ESTEAVLNLVCATCGKPCRSKTET 58
+ C DCGA+ V EL + FS E +N+ C +CGKP R +T+T
Sbjct: 439 IHCDDCGAV--PVPTKDLPVELPDNVEFSGRGPSPLAKLEDWINVPCPSCGKPARRETDT 496
>sp|Q10483|YDFB_SCHPO Uncharacterized protein C17C9.11c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.11c PE=4 SV=2
Length = 240
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV 40
LKC +C LL S++ A+ H+ TSH F E+ E +
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSHDQFEETEEEI 37
>sp|Q642B3|RHBD3_RAT Rhomboid domain-containing protein 3 OS=Rattus norvegicus GN=Rhbdd3
PE=2 SV=1
Length = 385
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 96 IDVDMSGSQPEEM-VEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152
+DV + GSQ +P V L++L+ MGFP +A AL +G VE AV+ +VE
Sbjct: 305 LDVSVQGSQNTLWSPKPSVSSLRLQQLQHMGFPTEQAAVALAATG--RVEGAVSLLVE 360
>sp|Q87FK5|ARAB_VIBPA Ribulokinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=araB PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 69 DFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELE 122
D++D + A + + VP+ ADS I VD +GS P + E LL E E
Sbjct: 63 DYLDAMTSAIQEVLATVPQTLADSVVGIGVDTTGSTPAPIDENGTVLALLPEFE 116
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603
PE=2 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSE 35
+L+C C L +AQEHA+ T H NF E
Sbjct: 316 TLRCMQCDVRLVGQVQAQEHAKQTGHKNFGE 346
>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1
SV=3
Length = 3658
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157
D+ ++ + MGF +RA AL G +VE A++W+ + DP
Sbjct: 1273 DEAIVGMIVEMGFSRSRAEDALRRVGTNSVEMAMDWLFTNPEDP 1316
>sp|O95835|LATS1_HUMAN Serine/threonine-protein kinase LATS1 OS=Homo sapiens GN=LATS1 PE=1
SV=1
Length = 1130
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE-NDPDIDEM 162
EV+ ++L++L+A GF +AL + N ++EAA+ ++ + DP ++M
Sbjct: 100 EVNPQMLQDLQAAGFDEDMVIQALQKTNNRSIEAAIEFISKMSYQDPRREQM 151
>sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2
SV=1
Length = 741
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 104 QPEEMVEPE----------VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153
Q E++ +PE VD++ LK + MGF A +AL + N N+EAA+N+++
Sbjct: 268 QKEKITKPEGKNEGVYRELVDEKALKHITEMGFSKEAARQALMDNSN-NLEAALNFLLSS 326
Query: 154 ENDPDIDEMPMVPVSGGGGASKSSLTPEE 182
+ P G G + + PE+
Sbjct: 327 NKQKPLQG----PPPRGKGKGRGRIRPED 351
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 5 SLKCGDCGALLRSVQEAQEH------AELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58
SL+C CGA E H A H F+++ +L C CG+ ++TE
Sbjct: 57 SLRCRTCGA---KGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETEI 113
Query: 59 DLHRKRTGHTDFVDKTSEAAKPISLEV 85
+ +R+R D ++K E+ PI E+
Sbjct: 114 EEYRQRI--LDAMEK-EESLTPIIKEI 137
>sp|A6TQK3|SYL_ALKMQ Leucine--tRNA ligase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=leuS PE=3 SV=1
Length = 824
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 6 LKCGDCGALLRSVQEAQEHAELTSHSNFS-------ESTEAVLNLVCATCGKPCRSKTET 58
+ C DCG + V+E + +L FS E++E LN C +CGK + +T+T
Sbjct: 437 IYCDDCGIV--PVREEELPVKLPVDVTFSGKGSSPLETSEGFLNTNCPSCGKMAKRETDT 494
>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1
PE=3 SV=1
Length = 325
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSE 35
A SL C +C L+ +EA HA T H NF+E
Sbjct: 288 AKFSLICLNCNKTLKGEKEAAIHASTTGHGNFTE 321
>sp|Q0SV78|SYL_CLOPS Leucine--tRNA ligase OS=Clostridium perfringens (strain SM101 /
Type A) GN=leuS PE=3 SV=1
Length = 816
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 8 CGDCGALLRSVQEAQEHAELTSHSNFSE-------STEAVLNLVCATCGKPCRSKTET 58
C +CG + V E+Q EL F+ +EA +N C CGKP + +T+T
Sbjct: 434 CEECGIV--PVPESQLPVELPYDVEFAPDGKSPLAKSEAFVNTTCPHCGKPAKRETDT 489
>sp|Q0TTD0|SYL_CLOP1 Leucine--tRNA ligase OS=Clostridium perfringens (strain ATCC 13124
/ NCTC 8237 / Type A) GN=leuS PE=3 SV=1
Length = 816
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 8 CGDCGALLRSVQEAQEHAELTSHSNFSE-------STEAVLNLVCATCGKPCRSKTET 58
C +CG + V E+Q EL F+ +EA +N C CGKP + +T+T
Sbjct: 434 CEECGIV--PVPESQLPVELPYDVEFAPDGKSPLAKSEAFVNTTCPHCGKPAKRETDT 489
>sp|Q8XML8|SYL_CLOPE Leucine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=leuS PE=3 SV=1
Length = 816
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 8 CGDCGALLRSVQEAQEHAELTSHSNFSE-------STEAVLNLVCATCGKPCRSKTET 58
C +CG + V E+Q EL F+ +EA +N C CGKP + +T+T
Sbjct: 434 CEECGIV--PVPESQLPVELPYDVEFAPDGKSPLAKSEAFVNTTCPHCGKPAKRETDT 489
>sp|Q8BYR2|LATS1_MOUSE Serine/threonine-protein kinase LATS1 OS=Mus musculus GN=Lats1 PE=1
SV=3
Length = 1129
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE-NDPDIDEM 162
EV+ ++ ++L+A GF +AL + N ++EAAV ++ + DP ++M
Sbjct: 100 EVNPQMFQDLQAAGFDEDMVIQALQKTNNRSIEAAVEFISKMSYQDPRREQM 151
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 97 DVDMSGSQPEEM-----VEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151
DVD+ +EM V PE ++E ++ LEAMGF A A S + N E A N+++
Sbjct: 303 DVDIFDQPDQEMPHSVNVTPE-EQESIERLEAMGFDRAIVIEAF-LSCDRNEELAANYLL 360
Query: 152 EHEND 156
EH D
Sbjct: 361 EHSAD 365
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSE 35
+L+C C L +EA+EHA+ T H+NF E
Sbjct: 270 ALRCMVCQTGLVGQKEAREHAKETGHTNFGE 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,781,697
Number of Sequences: 539616
Number of extensions: 3503924
Number of successful extensions: 13933
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 13842
Number of HSP's gapped (non-prelim): 151
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)