Query 027011
Match_columns 229
No_of_seqs 294 out of 741
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 99.9 4E-23 1.4E-27 208.0 5.9 155 38-199 559-753 (854)
2 1vek_A UBP14, ubiquitin-specif 99.8 2.1E-19 7.1E-24 135.8 8.8 67 101-167 4-82 (84)
3 2crn_A Ubash3A protein; compac 99.8 2.5E-19 8.6E-24 129.1 5.7 56 112-167 7-62 (64)
4 2dag_A Ubiquitin carboxyl-term 99.7 6.7E-18 2.3E-22 124.7 8.5 59 110-168 5-63 (74)
5 1whc_A RSGI RUH-027, UBA/UBX 3 99.7 3.4E-17 1.2E-21 117.7 5.8 54 111-164 6-59 (64)
6 2dak_A Ubiquitin carboxyl-term 99.7 4.3E-17 1.5E-21 116.5 5.4 56 111-167 6-61 (63)
7 2dai_A Ubadc1, ubiquitin assoc 99.7 9.4E-17 3.2E-21 121.1 7.2 56 111-167 26-81 (83)
8 2lbc_A Ubiquitin carboxyl-term 99.6 2.2E-15 7.6E-20 120.1 8.5 88 112-199 1-100 (126)
9 2cpw_A CBL-interacting protein 99.6 1.5E-15 5E-20 109.2 4.8 46 113-158 18-63 (64)
10 1wji_A Tudor domain containing 99.5 9.9E-14 3.4E-18 99.5 7.6 54 112-166 7-60 (63)
11 1wgn_A UBAP1, ubiquitin associ 99.5 3.1E-14 1E-18 102.0 4.3 42 114-156 19-60 (63)
12 1wiv_A UBP14, ubiquitin-specif 99.4 1.6E-13 5.6E-18 100.9 6.6 48 110-158 25-72 (73)
13 2ekk_A UBA domain from E3 ubiq 99.4 1.4E-13 4.6E-18 92.8 5.2 42 111-154 6-47 (47)
14 1dv0_A DNA repair protein HHR2 99.4 1.4E-13 4.9E-18 93.3 2.7 44 114-158 4-47 (47)
15 2g3q_A Protein YBL047C; endocy 99.4 4.3E-13 1.5E-17 88.6 4.5 41 113-154 3-43 (43)
16 2lbc_A Ubiquitin carboxyl-term 99.3 3.7E-12 1.2E-16 101.4 8.5 48 112-160 76-124 (126)
17 2dkl_A Trinucleotide repeat co 99.3 3.6E-12 1.2E-16 96.4 7.8 49 112-161 19-67 (85)
18 1veg_A NEDD8 ultimate buster-1 99.3 3E-12 1E-16 96.6 7.3 46 111-157 26-71 (83)
19 1ify_A HHR23A, UV excision rep 99.3 3E-12 1E-16 87.3 4.7 41 113-154 7-47 (49)
20 2cos_A Serine/threonine protei 99.3 3.5E-12 1.2E-16 88.9 4.9 41 112-152 7-47 (54)
21 4ae4_A Ubiquitin-associated pr 99.3 1.4E-12 4.7E-17 104.0 3.1 47 114-161 8-56 (118)
22 2jy5_A Ubiquilin-1; UBA, alter 99.2 2.2E-11 7.6E-16 84.0 6.2 41 113-154 11-52 (52)
23 1vg5_A RSGI RUH-014, rhomboid 99.2 4.5E-11 1.6E-15 88.1 6.7 45 111-156 26-70 (73)
24 2knz_A Ubiquilin-4; cytoplasm, 99.2 3.7E-11 1.3E-15 83.1 5.8 39 115-154 12-51 (53)
25 1z96_A DNA-damage, UBA-domain 99.1 1E-10 3.5E-15 75.2 5.2 36 115-151 5-40 (40)
26 2bwb_A Ubiquitin-like protein 99.0 4.7E-10 1.6E-14 75.7 5.6 39 114-153 7-46 (46)
27 2dah_A Ubiquilin-3; UBA domain 99.0 6.4E-10 2.2E-14 77.4 5.9 42 114-156 9-51 (54)
28 1vej_A Riken cDNA 4931431F19; 99.0 5.8E-10 2E-14 82.4 6.0 44 113-157 28-72 (74)
29 2dna_A Unnamed protein product 99.0 6.1E-10 2.1E-14 81.0 5.1 43 114-157 19-62 (67)
30 1wr1_B Ubiquitin-like protein 98.9 9.7E-10 3.3E-14 77.6 5.3 40 114-154 17-57 (58)
31 4ae4_A Ubiquitin-associated pr 98.7 8.9E-09 3E-13 81.9 5.2 40 113-153 75-114 (118)
32 1oqy_A HHR23A, UV excision rep 98.7 6.3E-09 2.2E-13 96.5 3.7 47 110-157 164-210 (368)
33 2cwb_A Chimera of immunoglobul 98.6 7.1E-08 2.4E-12 75.9 6.3 42 113-155 65-107 (108)
34 2ooa_A E3 ubiquitin-protein li 98.6 1.1E-07 3.7E-12 65.9 6.0 39 113-152 10-48 (52)
35 2d9s_A CBL E3 ubiquitin protei 98.4 5.3E-07 1.8E-11 62.6 6.1 43 112-155 7-49 (53)
36 2juj_A E3 ubiquitin-protein li 98.4 2E-07 6.8E-12 65.2 3.6 43 112-155 5-47 (56)
37 1oqy_A HHR23A, UV excision rep 98.3 1.3E-07 4.6E-12 87.6 1.1 44 113-157 324-367 (368)
38 2cp8_A NEXT to BRCA1 gene 1 pr 98.2 1.3E-06 4.3E-11 61.0 4.5 45 111-156 6-51 (54)
39 2oo9_A E3 ubiquitin-protein li 98.1 4.3E-06 1.5E-10 56.4 5.5 38 115-153 5-42 (46)
40 3k9o_A Ubiquitin-conjugating e 98.1 3E-06 1E-10 71.9 5.8 38 115-153 164-201 (201)
41 3ihp_A Ubiquitin carboxyl-term 97.9 4.9E-06 1.7E-10 84.1 3.9 46 111-157 717-762 (854)
42 2qsf_X RAD23, UV excision repa 97.9 1.1E-05 3.9E-10 67.9 4.8 42 114-156 130-171 (171)
43 1wiv_A UBP14, ubiquitin-specif 97.8 2.3E-06 7.7E-11 62.7 -0.3 47 144-199 2-51 (73)
44 1wj7_A Hypothetical protein (R 97.8 2.8E-05 9.6E-10 60.8 5.7 41 115-156 40-81 (104)
45 3mhs_A Ubiquitin carboxyl-term 97.7 3.9E-06 1.3E-10 77.6 -0.6 51 43-100 339-395 (476)
46 3i3t_A Ubiquitin carboxyl-term 97.4 3.1E-05 1.1E-09 67.5 1.4 51 43-100 227-283 (355)
47 2y6e_A Ubiquitin carboxyl-term 97.4 1.6E-05 5.3E-10 70.9 -1.2 51 43-100 232-288 (367)
48 1vjv_A Ubiquitin carboxyl-term 97.3 3.5E-05 1.2E-09 69.9 0.1 53 41-100 200-259 (415)
49 2ayn_A Ubiquitin carboxyl-term 97.2 4.2E-05 1.4E-09 68.6 -0.3 53 41-100 208-267 (404)
50 2gfo_A Ubiquitin carboxyl-term 97.2 4.5E-05 1.5E-09 69.5 -0.8 51 43-100 269-325 (396)
51 3e46_A Ubiquitin-conjugating e 97.1 0.00054 1.8E-08 60.5 5.9 38 115-153 216-253 (253)
52 3nhe_A Ubiquitin carboxyl-term 97.1 6.3E-05 2.2E-09 65.4 -0.4 51 43-100 217-273 (348)
53 2eps_A POZ-, at HOOK-, and zin 97.0 0.00096 3.3E-08 43.4 4.7 43 2-52 9-51 (54)
54 4gzn_C ZFP-57, zinc finger pro 96.8 0.0004 1.4E-08 47.9 1.5 41 3-52 2-42 (60)
55 1nb8_A Ubiquitin carboxyl-term 96.8 0.00022 7.6E-09 63.7 0.0 50 43-100 172-228 (353)
56 2f1z_A Ubiquitin carboxyl-term 96.5 0.00052 1.8E-08 64.6 0.6 50 43-100 341-397 (522)
57 2epr_A POZ-, at HOOK-, and zin 96.4 0.0017 5.9E-08 40.9 2.7 40 2-50 9-48 (48)
58 1bbo_A Human enhancer-binding 96.3 0.0015 5E-08 42.1 2.0 39 5-52 1-39 (57)
59 2adr_A ADR1; transcription reg 96.3 0.0018 6.2E-08 42.2 2.3 39 5-52 2-40 (60)
60 3uk3_C Zinc finger protein 217 96.3 0.0009 3.1E-08 43.1 0.8 41 3-52 2-42 (57)
61 2drp_A Protein (tramtrack DNA- 96.3 0.00079 2.7E-08 44.8 0.5 43 3-52 8-50 (66)
62 1x6e_A Zinc finger protein 24; 96.2 0.0017 5.7E-08 44.3 1.9 42 2-52 11-52 (72)
63 1wgl_A TOLL-interacting protei 96.2 0.0074 2.5E-07 42.3 5.0 45 110-156 5-52 (59)
64 2lce_A B-cell lymphoma 6 prote 96.2 0.0017 6E-08 44.3 1.7 42 2-52 14-55 (74)
65 2epq_A POZ-, at HOOK-, and zin 96.1 0.004 1.4E-07 38.4 3.0 39 2-49 7-45 (45)
66 2ct1_A Transcriptional repress 96.1 0.0025 8.4E-08 43.8 2.2 44 2-52 12-55 (77)
67 1x5w_A Zinc finger protein 64, 96.0 0.0021 7.2E-08 43.4 1.6 42 2-52 6-47 (70)
68 2cp9_A EF-TS, EF-TSMT, elongat 96.0 0.01 3.4E-07 42.5 4.9 42 111-153 6-48 (64)
69 2gqj_A Zinc finger protein KIA 96.0 0.0047 1.6E-07 44.8 3.3 42 3-52 22-64 (98)
70 2lv2_A Insulinoma-associated p 95.9 0.0028 9.5E-08 46.5 1.9 41 3-52 26-66 (85)
71 2d9h_A Zinc finger protein 692 95.8 0.0055 1.9E-07 42.0 2.7 45 2-52 4-48 (78)
72 2dmi_A Teashirt homolog 3; zin 95.7 0.017 5.8E-07 42.2 5.4 44 3-52 17-60 (115)
73 1x6h_A Transcriptional repress 95.7 0.0066 2.2E-07 41.8 3.0 45 2-52 12-57 (86)
74 2cot_A Zinc finger protein 435 95.7 0.0045 1.5E-07 42.5 2.1 42 3-53 16-57 (77)
75 2ghf_A ZHX1, zinc fingers and 95.5 0.0074 2.5E-07 45.7 2.9 46 2-52 15-60 (102)
76 2ctd_A Zinc finger protein 512 95.5 0.012 4.3E-07 43.1 4.0 42 4-55 33-75 (96)
77 2eq4_A Zinc finger protein 224 95.4 0.016 5.6E-07 35.5 3.7 38 2-48 9-46 (46)
78 2emy_A Zinc finger protein 268 95.3 0.014 4.8E-07 35.9 3.3 38 2-48 9-46 (46)
79 2emk_A Zinc finger protein 28 95.3 0.015 5.1E-07 35.9 3.3 38 2-48 9-46 (46)
80 2ytq_A Zinc finger protein 268 95.3 0.012 4.3E-07 36.3 2.9 38 2-48 9-46 (46)
81 2enc_A Zinc finger protein 224 95.2 0.02 6.8E-07 35.2 3.7 38 2-48 9-46 (46)
82 2eov_A Zinc finger protein 484 95.1 0.018 6E-07 35.4 3.3 38 2-48 9-46 (46)
83 2ytj_A Zinc finger protein 484 95.1 0.02 7E-07 35.2 3.6 38 2-48 9-46 (46)
84 2ytk_A Zinc finger protein 347 95.1 0.017 5.8E-07 35.5 3.2 38 2-48 9-46 (46)
85 2ep2_A Zinc finger protein 484 95.1 0.018 6.2E-07 35.4 3.3 38 2-48 9-46 (46)
86 2eml_A Zinc finger protein 28 95.1 0.016 5.5E-07 35.7 2.9 38 2-48 9-46 (46)
87 2el6_A Zinc finger protein 268 95.1 0.016 5.5E-07 35.7 3.0 38 2-48 9-46 (46)
88 2emm_A ZFP-95, zinc finger pro 95.0 0.019 6.4E-07 35.2 3.2 38 2-48 9-46 (46)
89 2eq0_A Zinc finger protein 347 95.0 0.018 6.3E-07 35.4 3.2 38 2-48 9-46 (46)
90 2ytd_A Zinc finger protein 473 95.0 0.018 6.2E-07 35.4 3.2 38 2-48 9-46 (46)
91 2eoe_A Zinc finger protein 347 95.0 0.014 4.9E-07 35.8 2.6 38 2-48 9-46 (46)
92 2ema_A Zinc finger protein 347 95.0 0.015 5E-07 35.8 2.7 38 2-48 9-46 (46)
93 2epx_A Zinc finger protein 28 95.0 0.016 5.3E-07 35.7 2.8 39 2-48 9-47 (47)
94 2em7_A Zinc finger protein 224 95.0 0.013 4.6E-07 36.0 2.4 38 2-48 9-46 (46)
95 2ytn_A Zinc finger protein 347 95.0 0.014 4.9E-07 35.9 2.6 38 2-48 9-46 (46)
96 2epw_A Zinc finger protein 268 95.0 0.02 6.7E-07 35.1 3.2 38 2-48 9-46 (46)
97 2dmd_A Zinc finger protein 64, 95.0 0.012 4E-07 41.4 2.4 23 4-26 7-29 (96)
98 2en8_A Zinc finger protein 224 95.0 0.016 5.5E-07 35.6 2.8 38 2-48 9-46 (46)
99 2eop_A Zinc finger protein 268 95.0 0.017 5.7E-07 35.5 2.8 38 2-48 9-46 (46)
100 2emx_A Zinc finger protein 268 95.0 0.02 6.9E-07 34.8 3.2 38 2-48 7-44 (44)
101 2yt9_A Zinc finger-containing 95.0 0.0099 3.4E-07 41.7 2.0 40 3-51 5-44 (95)
102 2wbt_A B-129; zinc finger; 2.7 95.0 0.011 3.7E-07 44.2 2.3 40 3-53 72-111 (129)
103 2en6_A Zinc finger protein 268 95.0 0.018 6.1E-07 35.4 3.0 38 2-48 9-46 (46)
104 2emf_A Zinc finger protein 484 95.0 0.016 5.6E-07 35.7 2.8 38 2-48 9-46 (46)
105 2eod_A TNF receptor-associated 94.9 0.012 4.2E-07 39.3 2.3 39 3-52 8-47 (66)
106 2eoq_A Zinc finger protein 224 94.9 0.025 8.5E-07 34.8 3.5 38 2-48 9-46 (46)
107 1vd4_A Transcription initiatio 94.9 0.011 3.7E-07 39.6 1.9 39 2-52 11-49 (62)
108 2yso_A ZFP-95, zinc finger pro 94.9 0.02 7E-07 35.2 3.1 38 2-48 9-46 (46)
109 2ytr_A Zinc finger protein 347 94.9 0.019 6.4E-07 35.2 2.9 38 2-48 9-46 (46)
110 2emh_A Zinc finger protein 484 94.9 0.016 5.4E-07 35.7 2.5 38 2-48 9-46 (46)
111 2ely_A Zinc finger protein 224 94.9 0.017 5.9E-07 35.6 2.7 38 2-48 9-46 (46)
112 2el4_A Zinc finger protein 268 94.9 0.017 5.8E-07 35.4 2.6 38 2-48 9-46 (46)
113 2eoo_A ZFP-95, zinc finger pro 94.8 0.02 6.7E-07 35.4 2.9 38 2-48 9-46 (46)
114 2ene_A Zinc finger protein 347 94.8 0.018 6.3E-07 35.4 2.7 38 2-48 9-46 (46)
115 2ep0_A Zinc finger protein 28 94.8 0.019 6.6E-07 35.3 2.8 38 2-48 9-46 (46)
116 2em8_A Zinc finger protein 224 94.8 0.017 6E-07 35.6 2.6 38 2-48 9-46 (46)
117 2eme_A Zinc finger protein 473 94.8 0.022 7.4E-07 34.9 2.9 38 2-48 9-46 (46)
118 2dlq_A GLI-kruppel family memb 94.8 0.015 5E-07 42.5 2.5 48 2-58 4-51 (124)
119 2ysp_A Zinc finger protein 224 94.7 0.018 6.3E-07 35.4 2.6 38 2-48 9-46 (46)
120 1llm_C Chimera of ZIF23-GCN4; 94.7 0.0075 2.6E-07 42.4 0.8 44 4-56 2-45 (88)
121 1wjp_A Zinc finger protein 295 94.7 0.023 7.7E-07 41.2 3.4 41 3-54 14-54 (107)
122 2yt9_A Zinc finger-containing 94.7 0.024 8.3E-07 39.7 3.5 46 3-55 33-78 (95)
123 2emp_A Zinc finger protein 347 94.7 0.019 6.4E-07 35.3 2.6 38 2-48 9-46 (46)
124 2epz_A Zinc finger protein 28 94.7 0.021 7.1E-07 35.1 2.7 38 2-48 9-46 (46)
125 2ee8_A Protein ODD-skipped-rel 94.7 0.022 7.6E-07 40.8 3.3 43 3-54 15-57 (106)
126 2em0_A Zinc finger protein 224 94.7 0.02 7E-07 35.2 2.7 38 2-48 9-46 (46)
127 2ytm_A Zinc finger protein 28 94.6 0.018 6.2E-07 35.6 2.4 38 2-48 9-46 (46)
128 2elz_A Zinc finger protein 224 94.6 0.019 6.4E-07 35.5 2.4 38 2-48 9-46 (46)
129 2ee8_A Protein ODD-skipped-rel 94.6 0.017 6E-07 41.4 2.6 47 3-58 43-89 (106)
130 2dmd_A Zinc finger protein 64, 94.6 0.01 3.6E-07 41.7 1.3 44 3-55 34-77 (96)
131 2em5_A ZFP-95, zinc finger pro 94.6 0.024 8.1E-07 35.0 2.8 38 2-48 9-46 (46)
132 2en1_A Zinc finger protein 224 94.5 0.019 6.4E-07 35.3 2.2 38 2-48 9-46 (46)
133 2em9_A Zinc finger protein 224 94.5 0.022 7.4E-07 35.0 2.5 38 2-48 9-46 (46)
134 1a1h_A QGSR zinc finger peptid 94.5 0.012 4.2E-07 40.7 1.4 21 5-25 34-54 (90)
135 2yu8_A Zinc finger protein 347 94.4 0.015 5.3E-07 35.7 1.7 38 2-48 9-46 (46)
136 2kmk_A Zinc finger protein GFI 94.4 0.011 3.7E-07 40.2 0.9 21 6-26 2-22 (82)
137 2dlk_A Novel protein; ZF-C2H2 94.3 0.027 9.1E-07 38.2 2.9 52 3-62 5-60 (79)
138 2lt7_A Transcriptional regulat 94.3 0.011 3.7E-07 46.2 0.9 41 3-52 20-60 (133)
139 2em2_A Zinc finger protein 28 94.3 0.036 1.2E-06 34.1 3.2 38 2-48 9-46 (46)
140 2csh_A Zinc finger protein 297 94.2 0.02 7E-07 41.4 2.1 42 3-54 8-49 (110)
141 2ep3_A Zinc finger protein 484 94.1 0.034 1.2E-06 34.1 2.7 38 2-48 9-46 (46)
142 2ytg_A ZFP-95, zinc finger pro 94.0 0.016 5.5E-07 35.7 1.1 38 2-48 9-46 (46)
143 2kmk_A Zinc finger protein GFI 93.9 0.021 7.3E-07 38.7 1.7 42 3-53 27-68 (82)
144 2dlq_A GLI-kruppel family memb 93.8 0.037 1.2E-06 40.3 2.9 43 4-52 34-76 (124)
145 2lt7_A Transcriptional regulat 93.8 0.012 4.1E-07 45.9 0.2 43 3-54 48-90 (133)
146 2ytt_A Zinc finger protein 473 93.7 0.026 8.9E-07 34.8 1.6 37 3-48 10-46 (46)
147 2csh_A Zinc finger protein 297 93.6 0.018 6.1E-07 41.7 0.9 41 3-52 35-75 (110)
148 1wjp_A Zinc finger protein 295 93.6 0.016 5.5E-07 42.0 0.6 41 5-55 42-82 (107)
149 1f2i_G Fusion of N-terminal 17 93.6 0.023 7.9E-07 38.2 1.3 41 3-52 17-59 (73)
150 2ej4_A Zinc finger protein ZIC 92.9 0.066 2.2E-06 37.5 2.9 49 4-53 24-73 (95)
151 2jp9_A Wilms tumor 1; DNA bind 92.8 0.031 1.1E-06 40.5 1.1 22 5-26 36-59 (119)
152 2pwq_A Ubiquitin conjugating e 92.8 0.02 6.7E-07 49.3 0.0 38 115-153 178-215 (216)
153 1q02_A Sequestosome 1; helical 92.6 0.081 2.8E-06 36.4 2.9 41 110-151 3-48 (52)
154 2i13_A AART; DNA binding, zinc 92.4 0.039 1.3E-06 43.8 1.2 22 5-26 105-126 (190)
155 2ebt_A Krueppel-like factor 5; 92.2 0.08 2.7E-06 37.2 2.6 12 41-52 74-85 (100)
156 2ytp_A Zinc finger protein 484 92.2 0.092 3.1E-06 32.2 2.6 36 2-46 9-44 (46)
157 2em4_A Zinc finger protein 28 92.2 0.12 3.9E-06 31.7 3.0 36 2-46 9-44 (46)
158 2dhy_A CUE domain-containing p 92.1 0.17 5.7E-06 36.3 4.2 42 113-156 17-61 (67)
159 1fv5_A First zinc finger of U- 92.1 0.12 4E-06 32.1 3.0 24 2-25 5-28 (36)
160 2yto_A Zinc finger protein 484 92.0 0.13 4.3E-06 31.5 3.0 37 2-47 9-45 (46)
161 2ytf_A Zinc finger protein 268 91.8 0.14 4.9E-06 31.1 3.2 36 2-46 9-44 (46)
162 2epu_A Zinc finger protein 32; 91.7 0.098 3.4E-06 31.9 2.3 36 2-46 9-44 (45)
163 1ubd_C Protein (YY1 zinc finge 91.7 0.061 2.1E-06 39.4 1.6 45 1-55 1-47 (124)
164 2wbs_A Krueppel-like factor 4; 91.7 0.07 2.4E-06 36.7 1.8 21 5-25 5-27 (89)
165 2ent_A Krueppel-like factor 15 91.7 0.13 4.4E-06 31.5 2.8 38 2-48 9-48 (48)
166 2kvh_A Zinc finger and BTB dom 91.7 0.16 5.6E-06 27.2 3.0 24 4-27 2-25 (27)
167 2en9_A Zinc finger protein 28 91.6 0.16 5.4E-06 31.0 3.2 36 2-46 9-44 (46)
168 2yrj_A Zinc finger protein 473 91.5 0.13 4.5E-06 31.2 2.7 36 2-46 9-44 (46)
169 2enh_A Zinc finger protein 28 91.5 0.1 3.5E-06 31.9 2.2 36 2-46 9-44 (46)
170 2eq3_A Zinc finger protein 347 91.5 0.11 3.8E-06 31.6 2.4 37 2-47 9-45 (46)
171 2rpc_A Zinc finger protein ZIC 91.3 0.11 3.6E-06 39.7 2.6 52 3-55 23-75 (155)
172 2elm_A Zinc finger protein 406 91.3 0.14 4.9E-06 30.0 2.6 29 2-31 6-34 (37)
173 2yrm_A B-cell lymphoma 6 prote 91.2 0.19 6.6E-06 30.4 3.2 36 2-46 7-42 (43)
174 1otr_A Protein CUE2; protein-p 91.1 0.37 1.3E-05 32.5 4.8 41 115-156 5-47 (49)
175 1paa_A Yeast transcription fac 91.0 0.12 4E-06 28.2 1.9 26 5-31 2-27 (30)
176 3iuf_A Zinc finger protein UBI 90.8 0.23 8E-06 31.1 3.5 30 2-32 4-33 (48)
177 2elx_A Zinc finger protein 406 90.5 0.23 7.8E-06 28.0 3.0 26 2-27 4-29 (35)
178 2elr_A Zinc finger protein 406 90.4 0.24 8.2E-06 28.2 3.0 26 2-27 6-31 (36)
179 2kvf_A Zinc finger and BTB dom 90.4 0.17 5.7E-06 27.2 2.2 23 4-26 2-24 (28)
180 1llm_C Chimera of ZIF23-GCN4; 90.2 0.013 4.3E-07 41.2 -3.3 39 3-51 29-67 (88)
181 1ard_A Yeast transcription fac 90.1 0.24 8.1E-06 26.5 2.7 23 5-27 2-24 (29)
182 1znf_A 31ST zinc finger from X 90.1 0.18 6.1E-06 26.8 2.1 21 6-26 2-22 (27)
183 2i13_A AART; DNA binding, zinc 90.0 0.083 2.8E-06 41.8 0.9 24 4-27 76-99 (190)
184 2elq_A Zinc finger protein 406 90.0 0.33 1.1E-05 27.8 3.4 26 2-27 6-31 (36)
185 2els_A Zinc finger protein 406 90.0 0.26 8.8E-06 28.2 2.9 26 2-27 6-31 (36)
186 2kvg_A Zinc finger and BTB dom 89.9 0.17 5.7E-06 27.4 1.9 23 4-26 2-24 (27)
187 1a1h_A QGSR zinc finger peptid 89.9 0.083 2.8E-06 36.4 0.7 43 3-54 2-46 (90)
188 2ctu_A Zinc finger protein 483 89.8 0.014 4.8E-07 38.7 -3.2 40 3-58 16-55 (73)
189 1srk_A Zinc finger protein ZFP 89.7 0.23 7.8E-06 28.2 2.5 25 2-26 4-28 (35)
190 1rik_A E6APC1 peptide; E6-bind 89.6 0.17 5.9E-06 27.2 1.8 22 5-26 2-23 (29)
191 1p7a_A BF3, BKLF, kruppel-like 89.5 0.24 8.1E-06 28.5 2.5 25 2-26 8-32 (37)
192 2dlk_A Novel protein; ZF-C2H2 89.5 0.15 5.1E-06 34.4 1.8 41 3-52 36-78 (79)
193 2j7j_A Transcription factor II 89.3 0.1 3.6E-06 35.2 0.9 40 6-54 2-45 (85)
194 1xb2_B EF-TS, elongation facto 89.1 0.31 1.1E-05 43.8 4.1 38 114-152 4-42 (291)
195 1klr_A Zinc finger Y-chromosom 89.1 0.25 8.7E-06 26.4 2.3 23 5-27 2-24 (30)
196 2j7j_A Transcription factor II 89.0 0.14 4.8E-06 34.6 1.4 38 3-52 29-71 (85)
197 1tr8_A Conserved protein (MTH1 88.9 0.54 1.9E-05 36.1 4.8 39 111-150 62-101 (102)
198 2m0d_A Zinc finger and BTB dom 88.9 0.32 1.1E-05 26.0 2.6 24 4-27 2-25 (30)
199 2elo_A Zinc finger protein 406 88.7 0.34 1.2E-05 27.8 2.8 26 2-27 6-31 (37)
200 2m0f_A Zinc finger and BTB dom 88.5 0.37 1.3E-05 25.6 2.7 23 5-27 2-24 (29)
201 1njq_A Superman protein; zinc- 88.4 0.36 1.2E-05 28.3 2.8 28 2-31 3-30 (39)
202 2elv_A Zinc finger protein 406 88.0 0.35 1.2E-05 27.6 2.5 24 3-26 7-30 (36)
203 2epa_A Krueppel-like factor 10 88.0 0.26 8.8E-06 32.8 2.2 41 3-52 15-59 (72)
204 1tte_A Ubiquitin-conjugating e 88.0 0.38 1.3E-05 41.2 3.7 28 113-140 168-195 (215)
205 2elt_A Zinc finger protein 406 88.0 0.45 1.5E-05 27.0 3.0 25 2-26 6-30 (36)
206 2gli_A Protein (five-finger GL 87.7 0.12 4.2E-06 39.1 0.5 50 4-62 66-119 (155)
207 2yte_A Zinc finger protein 473 87.5 0.5 1.7E-05 27.8 3.1 28 2-31 7-34 (42)
208 2ghf_A ZHX1, zinc fingers and 87.5 0.32 1.1E-05 36.5 2.6 42 3-52 48-89 (102)
209 1rim_A E6APC2 peptide; E6-bind 87.4 0.39 1.4E-05 27.4 2.5 23 5-27 2-24 (33)
210 2epc_A Zinc finger protein 32; 87.4 0.51 1.7E-05 27.8 3.1 26 2-27 8-33 (42)
211 2lvu_A Zinc finger and BTB dom 87.2 0.11 3.8E-06 27.6 0.0 22 5-26 2-23 (26)
212 2eow_A Zinc finger protein 347 87.1 0.51 1.8E-05 28.4 3.0 36 2-46 9-44 (46)
213 2epv_A Zinc finger protein 268 86.9 0.42 1.4E-05 28.9 2.5 26 2-27 9-34 (44)
214 2enf_A Zinc finger protein 347 86.8 0.43 1.5E-05 28.9 2.6 36 2-46 9-44 (46)
215 2emi_A Zinc finger protein 484 86.8 0.42 1.4E-05 28.9 2.5 36 2-46 9-44 (46)
216 2emg_A Zinc finger protein 484 86.8 0.44 1.5E-05 28.8 2.6 36 2-46 9-44 (46)
217 2el5_A Zinc finger protein 268 86.6 0.44 1.5E-05 28.2 2.5 28 2-31 7-34 (42)
218 2eos_A B-cell lymphoma 6 prote 86.6 0.46 1.6E-05 28.2 2.5 25 2-26 8-32 (42)
219 2emj_A Zinc finger protein 28 86.6 0.55 1.9E-05 28.5 3.0 36 2-46 9-44 (46)
220 2em3_A Zinc finger protein 28 86.6 0.55 1.9E-05 28.4 3.0 36 2-46 9-44 (46)
221 2m0e_A Zinc finger and BTB dom 86.6 0.41 1.4E-05 25.3 2.1 23 5-27 2-24 (29)
222 2eq1_A Zinc finger protein 347 86.5 0.44 1.5E-05 28.9 2.5 36 2-46 9-44 (46)
223 2ept_A Zinc finger protein 32; 86.5 0.47 1.6E-05 28.0 2.5 28 2-31 7-34 (41)
224 2elp_A Zinc finger protein 406 86.5 0.51 1.7E-05 27.1 2.6 25 2-26 6-31 (37)
225 2en2_A B-cell lymphoma 6 prote 86.5 0.46 1.6E-05 28.1 2.5 26 2-27 8-33 (42)
226 2eon_A ZFP-95, zinc finger pro 86.4 0.47 1.6E-05 28.9 2.5 36 2-46 9-44 (46)
227 2en7_A Zinc finger protein 268 86.3 0.44 1.5E-05 28.4 2.3 28 2-31 9-36 (44)
228 2eor_A Zinc finger protein 224 86.2 0.58 2E-05 28.2 2.9 36 2-46 9-44 (46)
229 2adr_A ADR1; transcription reg 86.0 0.59 2E-05 29.7 3.0 28 3-31 28-55 (60)
230 2eoj_A Zinc finger protein 268 86.0 0.44 1.5E-05 28.5 2.2 36 2-46 9-44 (44)
231 2em6_A Zinc finger protein 224 86.0 0.52 1.8E-05 28.6 2.6 36 2-46 9-44 (46)
232 3a43_A HYPD, hydrogenase nicke 85.9 0.37 1.3E-05 38.5 2.4 40 3-51 68-116 (139)
233 2ep1_A Zinc finger protein 484 85.8 0.47 1.6E-05 28.6 2.3 36 2-46 9-44 (46)
234 2eoh_A Zinc finger protein 28 85.8 0.64 2.2E-05 28.2 3.0 36 2-46 9-44 (46)
235 2eq2_A Zinc finger protein 347 85.8 0.46 1.6E-05 28.8 2.3 36 2-46 9-44 (46)
236 2eof_A Zinc finger protein 268 85.7 0.66 2.3E-05 27.6 3.0 28 2-31 9-36 (44)
237 2yts_A Zinc finger protein 484 85.7 0.52 1.8E-05 28.4 2.5 36 2-46 9-44 (46)
238 2lv2_A Insulinoma-associated p 85.6 0.57 2E-05 33.9 3.1 30 2-32 53-82 (85)
239 2lvr_A Zinc finger and BTB dom 85.7 0.16 5.5E-06 27.5 0.0 23 4-26 2-24 (30)
240 2emb_A Zinc finger protein 473 85.4 0.55 1.9E-05 28.1 2.5 28 2-31 9-36 (44)
241 2lvt_A Zinc finger and BTB dom 85.6 0.16 5.6E-06 27.5 0.0 22 5-26 2-23 (29)
242 2yu5_A Zinc finger protein 473 85.4 0.57 2E-05 28.0 2.6 28 2-31 9-36 (44)
243 2yti_A Zinc finger protein 347 85.3 0.47 1.6E-05 28.7 2.1 36 2-46 9-44 (46)
244 2eom_A ZFP-95, zinc finger pro 85.2 0.7 2.4E-05 28.1 3.0 35 3-46 10-44 (46)
245 2eou_A Zinc finger protein 473 85.1 0.72 2.5E-05 27.6 3.0 25 3-27 10-34 (44)
246 2eoz_A Zinc finger protein 473 85.1 0.63 2.2E-05 28.2 2.7 36 2-46 9-44 (46)
247 2yth_A Zinc finger protein 224 84.9 0.61 2.1E-05 28.3 2.5 36 2-46 9-44 (46)
248 1x6h_A Transcriptional repress 84.8 1.1 3.6E-05 30.3 4.0 39 4-51 46-84 (86)
249 2emz_A ZFP-95, zinc finger pro 84.5 0.77 2.6E-05 27.8 2.9 35 3-46 10-44 (46)
250 2jp9_A Wilms tumor 1; DNA bind 84.5 0.34 1.2E-05 34.8 1.4 44 2-54 3-50 (119)
251 1tf6_A Protein (transcription 84.4 0.49 1.7E-05 37.3 2.4 17 41-57 133-151 (190)
252 2eoy_A Zinc finger protein 473 84.1 0.58 2E-05 28.4 2.2 37 2-46 9-45 (46)
253 1aip_C EF-TS, elongation facto 83.8 1 3.5E-05 38.5 4.2 38 115-153 4-42 (196)
254 1x6f_A Zinc finger protein 462 83.8 0.77 2.6E-05 33.2 3.1 41 2-51 22-62 (88)
255 1yui_A GAGA-factor; complex (D 83.6 0.7 2.4E-05 29.2 2.5 26 2-27 21-46 (54)
256 2kdx_A HYPA, hydrogenase/ureas 83.6 0.31 1E-05 37.6 0.9 28 3-51 71-99 (119)
257 2ytb_A Zinc finger protein 32; 83.4 0.46 1.6E-05 28.0 1.5 25 2-26 8-32 (42)
258 2en3_A ZFP-95, zinc finger pro 83.4 0.8 2.7E-05 27.6 2.6 36 2-46 9-44 (46)
259 1ixs_A Holliday junction DNA h 83.3 1.6 5.4E-05 30.4 4.4 34 114-147 17-54 (62)
260 1tf6_A Protein (transcription 82.8 0.57 2E-05 36.9 2.2 21 5-25 42-64 (190)
261 1ubd_C Protein (YY1 zinc finge 82.5 0.92 3.1E-05 32.9 3.1 21 5-25 34-54 (124)
262 6rxn_A Rubredoxin; electron tr 82.2 0.46 1.6E-05 31.7 1.2 37 4-51 3-39 (46)
263 4gzn_C ZFP-57, zinc finger pro 81.9 0.56 1.9E-05 31.8 1.5 29 2-32 29-57 (60)
264 2d9h_A Zinc finger protein 692 81.5 1.3 4.4E-05 29.7 3.3 30 3-33 36-65 (78)
265 2kna_A Baculoviral IAP repeat- 81.5 1.9 6.4E-05 32.9 4.6 65 117-188 30-100 (104)
266 2eox_A Zinc finger protein 473 81.4 0.57 2E-05 28.0 1.4 26 2-27 9-34 (44)
267 2ab3_A ZNF29; zinc finger prot 80.8 0.89 3E-05 24.0 1.9 22 5-26 2-25 (29)
268 2d9k_A FLN29 gene product; zin 80.7 1.3 4.3E-05 30.8 3.1 38 3-51 15-52 (75)
269 2k5c_A Uncharacterized protein 79.4 0.32 1.1E-05 36.7 -0.4 43 6-51 9-60 (95)
270 2rpc_A Zinc finger protein ZIC 79.3 1.2 4E-05 33.8 2.8 21 6-26 63-83 (155)
271 2wbs_A Krueppel-like factor 4; 79.3 0.59 2E-05 31.8 1.0 42 3-53 33-76 (89)
272 2drp_A Protein (tramtrack DNA- 78.8 1.6 5.5E-05 28.1 3.0 26 2-27 37-62 (66)
273 1sp2_A SP1F2; zinc finger, tra 78.6 1.3 4.6E-05 24.1 2.2 22 5-26 2-25 (31)
274 2ct1_A Transcriptional repress 77.7 1.8 6.2E-05 29.0 3.1 28 4-32 44-71 (77)
275 2lce_A B-cell lymphoma 6 prote 77.1 1.9 6.4E-05 28.7 3.0 25 3-27 43-67 (74)
276 2gli_A Protein (five-finger GL 76.8 1.6 5.6E-05 32.7 2.9 43 11-62 45-89 (155)
277 2epp_A POZ-, at HOOK-, and zin 76.8 1.9 6.5E-05 29.9 3.0 28 3-32 11-38 (66)
278 1bhi_A CRE-BP1, ATF-2; CRE bin 76.1 2.4 8.3E-05 24.2 3.0 26 2-27 3-30 (38)
279 3uk3_C Zinc finger protein 217 75.5 1.7 5.7E-05 27.1 2.3 25 3-27 30-54 (57)
280 1bbo_A Human enhancer-binding 75.4 2.3 7.7E-05 26.5 2.9 25 3-27 27-51 (57)
281 1x5w_A Zinc finger protein 64, 74.8 2.3 8E-05 27.8 3.0 25 3-27 35-59 (70)
282 1zfd_A SWI5; DNA binding motif 74.4 1.7 5.7E-05 23.8 1.9 23 4-26 2-26 (32)
283 1va1_A Transcription factor SP 73.8 3.1 0.00011 23.8 3.0 26 2-27 5-32 (37)
284 1twf_L ABC10-alpha, DNA-direct 73.7 1.5 5.3E-05 31.4 1.9 37 3-66 26-62 (70)
285 2dmi_A Teashirt homolog 3; zin 72.7 3.3 0.00011 29.6 3.6 50 6-64 51-102 (115)
286 1x6e_A Zinc finger protein 24; 72.2 2.6 8.8E-05 27.9 2.7 25 3-27 40-64 (72)
287 4rxn_A Rubredoxin; electron tr 72.2 0.36 1.2E-05 33.2 -1.7 44 4-51 2-45 (54)
288 2ctd_A Zinc finger protein 512 72.2 2.4 8.2E-05 30.6 2.7 27 4-31 61-87 (96)
289 4dbg_B Ring finger protein 31; 71.7 2.9 9.9E-05 34.7 3.3 36 115-151 103-139 (162)
290 1e8j_A Rubredoxin; iron-sulfur 71.5 0.61 2.1E-05 31.7 -0.6 44 4-51 2-45 (52)
291 1f2i_G Fusion of N-terminal 17 71.3 2.4 8.3E-05 27.8 2.4 24 3-26 47-70 (73)
292 2ebt_A Krueppel-like factor 5; 71.0 1.6 5.5E-05 30.2 1.5 42 4-54 14-59 (100)
293 2gmg_A Hypothetical protein PF 70.7 1.4 4.7E-05 34.2 1.1 28 4-51 66-93 (105)
294 2eln_A Zinc finger protein 406 70.5 3.9 0.00013 25.1 3.0 26 2-27 6-33 (38)
295 1yk4_A Rubredoxin, RD; electro 70.1 0.38 1.3E-05 32.7 -1.9 44 4-51 1-44 (52)
296 2kfq_A FP1; protein, de novo p 68.4 0.24 8.2E-06 28.0 -2.8 20 5-24 2-21 (32)
297 2dal_A Protein KIAA0794; FAS a 67.6 17 0.00059 24.8 6.2 40 115-155 16-56 (62)
298 2cot_A Zinc finger protein 435 65.6 3.9 0.00013 27.2 2.5 25 3-27 44-68 (77)
299 2v3b_B Rubredoxin 2, rubredoxi 65.5 0.54 1.8E-05 32.3 -2.0 44 4-51 2-45 (55)
300 1dx8_A Rubredoxin; electron tr 62.2 0.87 3E-05 32.7 -1.4 44 4-51 6-49 (70)
301 2gqj_A Zinc finger protein KIA 61.2 4.4 0.00015 28.7 2.2 24 4-27 53-76 (98)
302 2kn9_A Rubredoxin; metalloprot 61.0 0.85 2.9E-05 33.8 -1.7 44 4-51 26-69 (81)
303 1x3c_A Zinc finger protein 292 60.5 6.3 0.00022 28.7 2.9 29 2-31 24-54 (73)
304 2dam_A ETEA protein; KIAA0887, 60.2 21 0.00073 24.8 5.6 40 115-155 19-60 (67)
305 1v92_A NSFL1 cofactor P47; 3-h 59.4 12 0.00041 23.5 3.9 37 116-153 7-44 (46)
306 1s24_A Rubredoxin 2; electron 56.8 1.1 3.7E-05 33.7 -1.8 44 4-51 34-77 (87)
307 3mjh_B Early endosome antigen 56.1 7.9 0.00027 24.1 2.4 27 5-32 5-31 (34)
308 2eod_A TNF receptor-associated 54.4 4.6 0.00016 26.2 1.2 26 2-27 33-59 (66)
309 2i5o_A DNA polymerase ETA; zin 54.3 5.2 0.00018 25.6 1.4 23 3-26 7-29 (39)
310 2di0_A Activating signal coint 52.0 45 0.0015 23.9 6.2 38 116-154 15-54 (71)
311 1cuk_A RUVA protein; DNA repai 50.4 18 0.00061 30.4 4.5 31 115-145 161-193 (203)
312 1ncs_A Peptide M30F, transcrip 48.3 6.1 0.00021 24.0 1.0 25 3-27 16-42 (47)
313 2k2d_A Ring finger and CHY zin 47.1 5.3 0.00018 29.1 0.7 28 5-51 37-64 (79)
314 2ztd_A Holliday junction ATP-d 46.5 27 0.00093 29.6 5.1 24 115-138 165-188 (212)
315 1pft_A TFIIB, PFTFIIBN; N-term 45.8 5.3 0.00018 25.9 0.4 13 1-13 1-13 (50)
316 2qho_B E3 ubiquitin-protein li 45.7 28 0.00095 23.7 4.0 43 112-155 7-51 (53)
317 2km4_A Regulator of TY1 transp 45.5 12 0.00042 29.3 2.6 33 124-156 1-35 (142)
318 2ej4_A Zinc finger protein ZIC 43.6 12 0.00042 25.4 2.1 32 6-46 63-94 (95)
319 4ets_A Ferric uptake regulatio 42.2 8.4 0.00029 30.8 1.2 43 6-51 108-156 (162)
320 3c5k_A HD6, histone deacetylas 41.0 9.4 0.00032 29.2 1.2 30 6-35 37-69 (109)
321 3avx_A Elongation factor TS, e 40.9 3.7 0.00013 43.7 -1.4 40 113-153 4-44 (1289)
322 2jvx_A NF-kappa-B essential mo 40.9 17 0.00056 21.7 2.0 23 5-27 3-25 (28)
323 3eyy_A Putative iron uptake re 39.5 7.2 0.00024 30.5 0.4 44 5-51 90-139 (145)
324 1zr9_A Zinc finger protein 593 37.2 13 0.00046 29.2 1.6 25 3-27 48-72 (124)
325 2dzl_A Protein FAM100B; UBA-li 36.5 53 0.0018 22.8 4.5 38 116-154 19-57 (66)
326 1p3q_Q VPS9P, vacuolar protein 36.0 15 0.00051 25.1 1.5 37 115-152 13-51 (54)
327 1lqs_L Interleukin-10-like pro 35.9 31 0.0011 28.1 3.7 41 183-223 24-78 (157)
328 3tl4_X Glutaminyl-tRNA synthet 34.9 19 0.00064 30.2 2.2 51 142-199 87-142 (187)
329 3mwm_A ZUR, putative metal upt 32.9 9.5 0.00032 29.6 0.1 44 5-51 87-136 (139)
330 2o03_A Probable zinc uptake re 32.9 20 0.00067 27.3 1.9 43 5-50 83-131 (131)
331 2epa_A Krueppel-like factor 10 32.8 28 0.00095 22.4 2.5 23 3-25 45-69 (72)
332 3twe_A Alpha4H; unknown functi 32.7 36 0.0012 19.8 2.5 17 182-198 5-21 (27)
333 2xig_A Ferric uptake regulatio 31.2 9.5 0.00032 30.0 -0.2 45 5-51 99-148 (150)
334 2ida_A Hypothetical protein; z 29.8 25 0.00087 26.7 2.0 25 7-31 36-64 (102)
335 3e21_A HFAF1, FAS-associated f 27.9 60 0.0021 21.1 3.4 32 116-148 7-40 (45)
336 1zw8_A Zinc-responsive transcr 27.9 26 0.00091 23.6 1.7 41 9-51 7-49 (64)
337 2ejs_A Autocrine motility fact 27.1 1.2E+02 0.0041 20.8 4.9 37 115-153 14-52 (58)
338 4fp9_B Mterf domain-containing 27.0 49 0.0017 29.7 3.7 38 115-152 47-87 (335)
339 3h4j_B AMPK kdaid, SNF1-like p 26.9 48 0.0016 28.6 3.6 50 104-153 272-322 (336)
340 1wvk_A AT2G23090/F21P24.15; st 26.7 43 0.0015 24.9 2.7 29 2-31 42-73 (86)
341 1zu1_A DSRBP-ZFA, RNA binding 26.4 9.9 0.00034 29.3 -0.9 62 4-65 31-116 (127)
342 1lv3_A Hypothetical protein YA 26.3 20 0.00067 25.7 0.8 9 43-51 10-18 (68)
343 1r8j_A KAIA; circadian clock p 26.1 94 0.0032 27.8 5.3 45 175-219 184-230 (289)
344 4g3o_A E3 ubiquitin-protein li 25.8 1.3E+02 0.0045 20.7 4.9 37 115-153 18-56 (58)
345 3n5l_A Binding protein compone 25.6 48 0.0017 28.3 3.3 24 175-198 272-295 (310)
346 1dxg_A Desulforedoxin; non-hem 24.4 22 0.00074 21.8 0.6 12 4-15 5-16 (36)
347 2lj4_A Peptidyl-prolyl CIS-tra 23.9 78 0.0027 23.7 3.9 24 175-198 29-52 (115)
348 3p7i_A PHND, subunit of alkylp 23.2 58 0.002 28.2 3.4 24 175-198 281-304 (321)
349 1ixr_A Holliday junction DNA h 23.1 17 0.0006 30.2 0.0 25 114-138 146-170 (191)
350 2g45_A Ubiquitin carboxyl-term 22.4 33 0.0011 27.0 1.5 30 6-35 47-85 (129)
351 2e72_A POGO transposable eleme 21.9 71 0.0024 21.5 2.8 25 3-27 10-34 (49)
352 3b09_A Peptidyl-prolyl CIS-tra 21.6 43 0.0015 24.5 1.9 19 176-194 70-88 (88)
353 3jyw_9 60S ribosomal protein L 21.0 38 0.0013 24.4 1.4 11 41-51 25-35 (72)
354 3h0g_L DNA-directed RNA polyme 20.9 27 0.00093 24.5 0.6 24 27-50 6-29 (63)
355 2ekf_A Ancient ubiquitous prot 20.7 1.6E+02 0.0054 20.4 4.6 38 115-154 14-53 (61)
356 1r5q_A KAI A, circadian oscill 20.5 65 0.0022 24.6 2.7 41 179-219 2-45 (102)
357 3t6p_A Baculoviral IAP repeat- 20.3 65 0.0022 29.0 3.2 41 114-154 119-165 (345)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.87 E-value=4e-23 Score=207.98 Aligned_cols=155 Identities=25% Similarity=0.389 Sum_probs=119.9
Q ss_pred hhhhhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCCC----CCCCCCc
Q 027011 38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM----SGSQPEE 107 (229)
Q Consensus 38 E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls~----g~~~gEe 107 (229)
|.+..|.|+.|+++ ..++|+.+|.++|++|+|+.+||.+.. |.|+ |..|+.|||+. |.+++|+
T Consensus 559 E~Le~y~C~~C~~k-------~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~ 631 (854)
T 3ihp_A 559 EQVDDFWSTALQAK-------SVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEE 631 (854)
T ss_dssp EEEEEEEETTTTEE-------EEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCC
T ss_pred eEeeeeeccccCCc-------ceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCce
Confidence 33434999999987 789999999999999999999999953 8898 56788999997 6678887
Q ss_pred ccCC--------------CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 027011 108 MVEP--------------EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGA 173 (229)
Q Consensus 108 ~l~~--------------~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~ 173 (229)
.++. .+|+++|++|++|||++++++|||++|||.++|.||+||++||+|+|+++|+..+..+....
T Consensus 632 ~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s 711 (854)
T 3ihp_A 632 ELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGS 711 (854)
T ss_dssp BCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-------
T ss_pred ecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccc
Confidence 6532 35889999999999999999999999999999999999999999999999997654211100
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 027011 174 ----------------SKSSLTPEEIKLKAQELRYGIFYAVY 199 (229)
Q Consensus 174 ----------------~~~~LTeEEkkaK~~ELr~ki~~~~~ 199 (229)
.....+.+.+++.|++--..+.++.+
T Consensus 712 ~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraid 753 (854)
T 3ihp_A 712 TSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVD 753 (854)
T ss_dssp -------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred cccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHH
Confidence 01234556666666655555555554
No 2
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.79 E-value=2.1e-19 Score=135.78 Aligned_cols=67 Identities=36% Similarity=0.601 Sum_probs=60.0
Q ss_pred CCCCCCcccC------------CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011 101 SGSQPEEMVE------------PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (229)
Q Consensus 101 g~~~gEe~l~------------~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~ 167 (229)
|+|+||++++ +.++++.|++|++|||++++|++||++|+|.|++.|++|||+|++|+++|+|+..|+
T Consensus 4 g~q~gEe~lp~~~~~~~~~~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~~~ 82 (84)
T 1vek_A 4 GSSGGEELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPS 82 (84)
T ss_dssp CCCCCCCSCCSSCSSSCCCSCCCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCC
T ss_pred CCCCCcccCcCCCCcccccccCCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCCCC
Confidence 6678887763 235899999999999999999999999988899999999999999999999997665
No 3
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.77 E-value=2.5e-19 Score=129.10 Aligned_cols=56 Identities=39% Similarity=0.627 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~ 167 (229)
.+|++.|++|++|||++++|++||++|||+++|+||+||++|++||++|+|+..|.
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~~ 62 (64)
T 2crn_A 7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPS 62 (64)
T ss_dssp CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCCC
Confidence 35777899999999999999999999999999999999999999999999987665
No 4
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=124.70 Aligned_cols=59 Identities=37% Similarity=0.738 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 027011 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (229)
Q Consensus 110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~ 168 (229)
.+.++++.|++|++|||++++|++||++|+|.++|+|++||++|++|+++|+|+..|+.
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~~~ 63 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGS 63 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCCCC
Confidence 35689999999999999999999999999987899999999999999999999987764
No 5
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.68 E-value=3.4e-17 Score=117.71 Aligned_cols=54 Identities=44% Similarity=0.788 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPM 164 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~ 164 (229)
..++++.|++|++|||++++|++||++|||.|+|.|++||++|++|+++|+|+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl~ 59 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLS 59 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccccC
Confidence 357888999999999999999999999976699999999999999999999986
No 6
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=116.51 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~ 167 (229)
..++++.|++|++|||++++|++||++++| ++++|++||++|++|+++++|+..|+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d~d~d~p~~~p~ 61 (63)
T 2dak_A 6 SGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPS 61 (63)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHSCCSSSCCCCSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCcccccCCCCCC
Confidence 357999999999999999999999999998 89999999999999999999998775
No 7
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.4e-17 Score=121.09 Aligned_cols=56 Identities=41% Similarity=0.697 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~ 167 (229)
+.++++.|++|++|||++++|++||++++| |+|.|++||++|++|+++|+|+..|+
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d~d~d~pl~~~~ 81 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAEDPTIDTPLSGPS 81 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGCSTTCCCCCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccccCCCCCC
Confidence 568999999999999999999999999966 99999999999999999999987665
No 8
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=120.07 Aligned_cols=88 Identities=30% Similarity=0.565 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC--------CC-CHHH
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKS--------SL-TPEE 182 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~~~~--------~L-TeEE 182 (229)
++|+..|++|++|||++.+|++||++|||++++.||+||++|++|+++++|+..+....+..... .+ -.++
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~ 80 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEE 80 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHH
Confidence 47899999999999999999999999999999999999999999999998876553211111011 22 3456
Q ss_pred HHHHHHHH---HHHHHHhhc
Q 027011 183 IKLKAQEL---RYGIFYAVY 199 (229)
Q Consensus 183 kkaK~~EL---r~ki~~~~~ 199 (229)
+-++|.++ +.++++|..
T Consensus 81 ~v~~L~~MGF~~~~a~~AL~ 100 (126)
T 2lbc_A 81 IVAIITSMGFQRNQAIQALR 100 (126)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 66666665 455555544
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.57 E-value=1.5e-15 Score=109.22 Aligned_cols=46 Identities=35% Similarity=0.603 Sum_probs=44.0
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d 158 (229)
++++.|++|++|||++++|++||++|+|+|+|.|++||++|++|||
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 6788999999999999999999999998899999999999999986
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.47 E-value=9.9e-14 Score=99.48 Aligned_cols=54 Identities=33% Similarity=0.493 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCC
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP 166 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p 166 (229)
.++++.|++|++|||++++|++||++++| |++.|++||++|.++.....|+..+
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~~~~~~p~~~~ 60 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGP 60 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccCCCCCCC
Confidence 47899999999999999999999999988 9999999999999887776665433
No 11
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.46 E-value=3.1e-14 Score=101.98 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=39.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
.++.|++|++|||++++|+|||++||| |+|+|++|||+|+|-
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 467899999999999999999999998 999999999999874
No 12
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.43 E-value=1.6e-13 Score=100.92 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (229)
Q Consensus 110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d 158 (229)
.+.++++.|++|++|||++.+|++||++|+| |+++|++||++|++|+.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999999998 99999999999999864
No 13
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=92.82 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
+.++++.|++|++|||++++|++||+++| |+|.|++||++|+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTHP 47 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcCC
Confidence 57899999999999999999999999995 7999999999995
No 14
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.37 E-value=1.4e-13 Score=93.32 Aligned_cols=44 Identities=27% Similarity=0.482 Sum_probs=41.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d 158 (229)
+++.|++|++|||++.+|++||.++|+ |++.|++|||+|++|++
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDDE 47 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCCCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcCCCC
Confidence 678899999999999999999999985 99999999999999864
No 15
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.37 E-value=4.3e-13 Score=88.58 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
++++.|++|++|||++++|++||++++| |++.|++||++|.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcCC
Confidence 4678999999999999999999999987 9999999999983
No 16
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.33 E-value=3.7e-12 Score=101.39 Aligned_cols=48 Identities=31% Similarity=0.617 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-CCCCC
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN-DPDID 160 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d-D~did 160 (229)
.+++..|++|++|||++++|++||++||| |++.|++||++|++ |+++|
T Consensus 76 ~~~e~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~~d~~~d 124 (126)
T 2lbc_A 76 QPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSD 124 (126)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCSSCCCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCccCCC
Confidence 37999999999999999999999999988 99999999999999 87654
No 17
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.32 E-value=3.6e-12 Score=96.43 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCC
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~ 161 (229)
.+|++.|++|++|||++++|++||+.++ .++|+|++||++|++|+|...
T Consensus 19 ~~n~~~I~qL~~MGF~~~~a~~AL~~~n-~n~e~A~ewL~~h~~D~D~~~ 67 (85)
T 2dkl_A 19 WIMSRLIKQLTDMGFPREPAEEALKSNN-MNLDQAMSALLEKKVDVDKRG 67 (85)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHTTSCCSSCCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHHCcCCccccc
Confidence 3678999999999999999999996655 599999999999999987443
No 18
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.32 E-value=3e-12 Score=96.64 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~ 157 (229)
..++++.|++|++|||++.+|++||+.++| ++++|++|||+|+++.
T Consensus 26 ~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~i 71 (83)
T 1veg_A 26 ASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGSL 71 (83)
T ss_dssp CCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 446899999999999999999999999998 8999999999998864
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.28 E-value=3e-12 Score=87.27 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
.+++.|++|++|||++++|++||++++| |+++|++||++|.
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~gi 47 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 3678899999999999999999999998 9999999999973
No 20
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.27 E-value=3.5e-12 Score=88.93 Aligned_cols=41 Identities=32% Similarity=0.540 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (229)
+++...+++|++|||++++|++||+.|||++++.||+||..
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 68899999999999999999999999999999999999975
No 21
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.27 E-value=1.4e-12 Score=103.98 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=41.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC--CCCCCCC
Q 027011 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE--NDPDIDE 161 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~--dD~did~ 161 (229)
++++|++|++||||+++|+|||++||| |++.||+||++|+ +|+++++
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~ 56 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDP 56 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCCh
Confidence 578999999999999999999999999 9999999999998 3444444
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.21 E-value=2.2e-11 Score=83.98 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 113 vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
..++.|++|++||| +++++++||.+++| |++.|++||++|+
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~~ 52 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGSS 52 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhCc
Confidence 35789999999999 99999999999998 9999999999984
No 23
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.17 E-value=4.5e-11 Score=88.13 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
....++.|++|++|||++++|++||+.++| |++.|++||++|++.
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP 70 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 345788999999999999999999999998 999999999999654
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.17 E-value=3.7e-11 Score=83.09 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 115 ~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
++.|++|++||| +++++++||++++| |++.|++||++|+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence 457999999999 99999999999998 9999999999985
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.10 E-value=1e-10 Score=75.23 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~ 151 (229)
++.|++|++|||++++|++||..++| |++.|++||+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 56899999999999999999999987 9999999995
No 26
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.01 E-value=4.7e-10 Score=75.65 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=35.2
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 114 d~~~l~qL~eMGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
-++.|++|++|||+ +.++++||.+++| |++.|++||++|
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 36789999999995 7788999999998 999999999986
No 27
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.99 E-value=6.4e-10 Score=77.38 Aligned_cols=42 Identities=29% Similarity=0.352 Sum_probs=37.1
Q ss_pred CHHHHHHHHhCCCCH-HHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 114 DKELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 114 d~~~l~qL~eMGF~~-~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
.+..|++|++|||+. .++++||.+++| |++.|++|||+|++.
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGP 51 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 477899999999955 557999999998 999999999999764
No 28
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.99 E-value=5.8e-10 Score=82.43 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011 113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (229)
Q Consensus 113 vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~ 157 (229)
.-+..|++|++||| ++.++++||.+++| |++.|++|||+|++.+
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGPS 72 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCCC
Confidence 35788999999999 68999999999988 9999999999997654
No 29
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.96 E-value=6.1e-10 Score=80.98 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=37.4
Q ss_pred CHHHHHHHHhCCCCH-HHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011 114 DKELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHENDP 157 (229)
Q Consensus 114 d~~~l~qL~eMGF~~-~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~ 157 (229)
-+..|++|.+|||.. .+.++||++++| |+++|++||++|+++.
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS 62 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 356899999999954 555999999998 9999999999998874
No 30
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.94 E-value=9.7e-10 Score=77.64 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=36.2
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 114 d~~~l~qL~eMGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
-+..|++|++|||+ +.++++||.+++| |++.|++||++|+
T Consensus 17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~ 57 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD 57 (58)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 35689999999995 8888999999998 9999999999985
No 31
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.74 E-value=8.9e-09 Score=81.91 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
+++..+.+|++|||++.+|++||+.|+| ++++|++||+..
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 3667899999999999999999999998 999999999975
No 32
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.70 E-value=6.3e-09 Score=96.49 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (229)
Q Consensus 110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~ 157 (229)
....+++.|++|++|||++++|++||++++| |+++|++||++|++|.
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPGS 210 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTTC
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 3456889999999999999999999999999 9999999999998875
No 33
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.59 E-value=7.1e-08 Score=75.92 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011 113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEN 155 (229)
Q Consensus 113 vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d 155 (229)
..++.|++|.+||| ++.++++||..++| |+++|++||++++.
T Consensus 65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcCC
Confidence 35789999999999 56899999999998 99999999999853
No 34
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.57 E-value=1.1e-07 Score=65.89 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (229)
.-++.+++|++|||+++.|.+||..++| |++.|.+.|.+
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLle 48 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILRE 48 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 3448999999999999999999999988 99999999976
No 35
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.40 E-value=5.3e-07 Score=62.65 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d 155 (229)
+.-+..+++|++|||+++.+++||..++| |+|.|.+.|.+...
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 34567799999999999999999999988 99999999987643
No 36
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.38 E-value=2e-07 Score=65.21 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (229)
Q Consensus 112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d 155 (229)
.+.++.+++|++|||+++.+++||..++| |++.|.|-|++-..
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~ 47 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCC
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHc
Confidence 34577899999999999999999999988 99999999998644
No 37
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.29 E-value=1.3e-07 Score=87.59 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=41.1
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~ 157 (229)
.+++.|++|++|||++..|++||+++++ |++.|++|||+|++|.
T Consensus 324 ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 324 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDD 367 (368)
T ss_dssp TTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhCcCcC
Confidence 4889999999999999999999999986 9999999999998874
No 38
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.22 E-value=1.3e-06 Score=61.02 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 111 PEVDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
.+.++..|++|.+||| ++.+-.+||+.+|+ |+++||++|+...+.
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGP 51 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSS
T ss_pred HHhhHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 3467789999999999 99999999999987 999999999987543
No 39
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.13 E-value=4.3e-06 Score=56.45 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
++.+..|++|||+++.+++||..++| |++.|.|-|.+.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHh
Confidence 46789999999999999999999988 999999999875
No 40
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.11 E-value=3e-06 Score=71.93 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
++.|++|++|||++++|+.||...++ ++++|++|||+|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 67899999999999999999999988 999999999986
No 41
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.91 E-value=4.9e-06 Score=84.06 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (229)
Q Consensus 111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~ 157 (229)
..++++.+++|.+|||+..+|++||+.++| ++++|++|||+|++|.
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~~ 762 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDL 762 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCcccc
Confidence 457999999999999999999999999988 9999999999998874
No 42
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.87 E-value=1.1e-05 Score=67.90 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=36.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
+++.|++|++|||++..+++|+.++++ |++.|.+|||+++.|
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~~~~d 171 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDK-NEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTTC---
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 557899999999999999999999975 999999999998754
No 43
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.82 E-value=2.3e-06 Score=62.65 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHhhc
Q 027011 144 EAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQEL---RYGIFYAVY 199 (229)
Q Consensus 144 E~A~~WL~~h~dD~did~pl~~p~~s~s~~~~~~LTeEEkkaK~~EL---r~ki~~~~~ 199 (229)
|+||+||++|++|||||+|+..+ .... .+++-++|.++ ++++++|..
T Consensus 2 ~~am~wl~~h~dDpd~d~pl~~~--------~~~~-~~~~v~~L~~MGF~~~~a~~AL~ 51 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAPISHQ--------TSDI-DQSSVDTLLSFGFAEDVARKALK 51 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCCS--------SCSS-CHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCccCCCCCC--------CCCC-CHHHHHHHHHcCCCHHHHHHHHH
Confidence 46899999999999999998652 1122 46677778777 666666654
No 44
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.80 E-value=2.8e-05 Score=60.77 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=37.5
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 115 KELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 115 ~~~l~qL~eM-GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
++.|..|++| ||+++.|++||..++| +++.|++.|++...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 4578999999 9999999999999988 999999999998654
No 45
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=97.71 E-value=3.9e-06 Score=77.62 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=45.0
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls~ 100 (229)
+.|+.|++. ..++|+.+|.++|++|+|+.+||.... +.|+ |..|..|||+.
T Consensus 339 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~ 395 (476)
T 3mhs_A 339 YHCGECNST-------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKN 395 (476)
T ss_dssp CEETTTTEE-------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGG
T ss_pred CcCCccCCc-------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechh
Confidence 999999986 789999999999999999999999753 7787 46688899986
No 46
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=97.44 E-value=3.1e-05 Score=67.50 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=43.8
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls~ 100 (229)
+.|+.|+++ ..++|+..|.++|++|+|+.+||.... +.|+ |..| +.|||+.
T Consensus 227 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~ 283 (355)
T 3i3t_A 227 PVCDRCRQK-------TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD 283 (355)
T ss_dssp CCCSSSCCC-------CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred eeCCCCCCc-------cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence 899999997 789999999999999999999999886 7777 3445 5688875
No 47
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=97.39 E-value=1.6e-05 Score=70.93 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=44.1
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCcc-cccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEE-AIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~e-~lDls~ 100 (229)
+.|+.|+++ ..|+|+..|.++|++|+|+.+||.... +.|+ |..|. .|||+.
T Consensus 232 ~~C~~C~~~-------~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~ 288 (367)
T 2y6e_A 232 WYCPNCKKH-------QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE 288 (367)
T ss_dssp EEETTTTEE-------ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred ccCCCCCCC-------ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence 899999986 789999999999999999999999975 6777 45564 688885
No 48
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=97.30 E-value=3.5e-05 Score=69.86 Aligned_cols=53 Identities=6% Similarity=-0.099 Sum_probs=37.8
Q ss_pred hhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (229)
Q Consensus 41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~ 100 (229)
+.+.|+.|++. ..++|+..|.++|++|+|+.+||.+.. ..|+ |..|..|||+.
T Consensus 200 i~~~c~~c~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~ 259 (415)
T 1vjv_A 200 IEKRSDLTGAN-------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVAD 259 (415)
T ss_dssp ---------CC-------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred hhhcccccCCc-------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHH
Confidence 35799999987 679999999999999999999999985 4676 45678899885
No 49
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=97.23 E-value=4.2e-05 Score=68.60 Aligned_cols=53 Identities=8% Similarity=-0.066 Sum_probs=45.4
Q ss_pred hhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (229)
Q Consensus 41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~ 100 (229)
+.+.|+.|++. ..+.|+..|.++|++|+|+.+||.... ..|+ |..|..|||+.
T Consensus 208 l~~~c~~c~~~-------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~ 267 (404)
T 2ayn_A 208 ITKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYE 267 (404)
T ss_dssp CCCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGG
T ss_pred eeecchhhCCc-------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhH
Confidence 35789999986 678999999999999999999999985 5777 45688899986
No 50
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=97.17 E-value=4.5e-05 Score=69.50 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=43.5
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls~ 100 (229)
+.|+.|++. ..|+|+..|.++|++|+|+.+||.... ..|+ |..| +.|||+.
T Consensus 269 ~~C~~C~~~-------~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~ 325 (396)
T 2gfo_A 269 FYCSHCRAR-------RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQ 325 (396)
T ss_dssp EEETTTTEE-------ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGG
T ss_pred cccCCcccc-------cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccc
Confidence 899999986 679999999999999999999999886 5676 4455 5688875
No 51
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.14 E-value=0.00054 Score=60.50 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
++.|++|++|||+++.|+.||...|+ +++.|++.||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 57899999999999999999999988 999999999974
No 52
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=97.11 E-value=6.3e-05 Score=65.38 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=43.3
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls~ 100 (229)
+.|+.|+++ ..+.|+..|.++|++|+|+.+||.... ..|+ |..| +.|||+.
T Consensus 217 ~~C~~C~~~-------~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~ 273 (348)
T 3nhe_A 217 PTCCRCRGR-------KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE 273 (348)
T ss_dssp CEETTTTEE-------CCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGG
T ss_pred eECCCCCCc-------ccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhh
Confidence 799999986 789999999999999999999998876 6776 3445 5688875
No 53
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=96.99 E-value=0.00096 Score=43.40 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=35.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..|++.|......+.|..+ .|.. ..+|+|+.||+.+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~-------~k~~~C~~C~k~F 51 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQ-VHTS-------ERPHKCQVWVSGP 51 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHH-TSCC-------CCCCCSSSSCCSS
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHH-hcCC-------CCCccCCCCCCCC
Confidence 35679999999999999999999875 5653 3579999999964
No 54
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=96.79 E-value=0.0004 Score=47.95 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=34.9
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
.+.|+|++||+.|......+.|... |+. ..+|.|+.||+.+
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~--Ht~-------ekp~~C~~C~k~F 42 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRA--HLG-------YRPRSCPECGKCF 42 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHH--HHT-------CCCEECTTTCCEE
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHH--hCC-------CcCeECCCCCCCc
Confidence 4689999999999999999999754 642 3689999999964
No 55
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=96.76 E-value=0.00022 Score=63.69 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=39.8
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~ 100 (229)
+.|+.|++ ..|.|+..|.++|++|+|+.+||.... ..|+ |..|+.|||+.
T Consensus 172 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~ 228 (353)
T 1nb8_A 172 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 228 (353)
T ss_dssp EECGGGCE--------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGG
T ss_pred ccCCcCcc--------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhh
Confidence 78999976 468999999999999999999999874 6677 46678899875
No 56
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=96.50 E-value=0.00052 Score=64.59 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=42.6
Q ss_pred ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (229)
Q Consensus 43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~ 100 (229)
+.|+.|++ ..|.|+..|.++|++|+|+.+||.... ..|+ |..|..|||+.
T Consensus 341 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 397 (522)
T 2f1z_A 341 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 397 (522)
T ss_dssp BCCGGGCS--------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGG
T ss_pred eecCcCCc--------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchh
Confidence 78999986 478999999999999999999999874 5676 46678899875
No 57
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=96.45 E-value=0.0017 Score=40.94 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=33.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~ 50 (229)
....++|..|++.|......+.|... |.. ..+|.|+.|||
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C~k 48 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVYHLNRHKLS--HSG-------EKPYSSGPSSG 48 (48)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGG--SCS-------CCCCCSCCCCC
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHh--cCC-------CCCccCCCCCC
Confidence 35679999999999999999999643 652 35799999986
No 58
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=96.35 E-value=0.0015 Score=42.07 Aligned_cols=39 Identities=21% Similarity=0.492 Sum_probs=32.6
Q ss_pred eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
.++|..||+.|......+.|... |.. ..+|.|+.||+.+
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 39 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRT--HTD-------VRPYHCTYCNFSF 39 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHH--TSS-------CCCEECSSSSCEE
T ss_pred CCcCCCCcCcCCCHHHHHHHHHh--cCC-------CCCccCCCCCchh
Confidence 47899999999999999999865 543 3579999999964
No 59
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=96.32 E-value=0.0018 Score=42.16 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=32.8
Q ss_pred eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
.++|..||+.|......+.|... |.. ..+|.|+.||+.+
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 40 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRS--HTN-------EKPYPCGLCNRAF 40 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHT--TTS-------SCSEECTTTCCEE
T ss_pred cCcCCCCccccCCHHHHHHHHHH--hCC-------CCCccCCCCCCcc
Confidence 58999999999999999999754 642 2579999999964
No 60
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=96.32 E-value=0.0009 Score=43.10 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=32.0
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
..+++|..||+.|......+.|... |.. ..++.|+.|++.+
T Consensus 2 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 42 (57)
T 3uk3_C 2 SSSRECSYCGKFFRSNYYLNIHLRT--HTG-------EKPYKCEFCEYAA 42 (57)
T ss_dssp ---CBCTTTCCBCSCHHHHHHHHHH--HHC-------CCCEECSSSSCEE
T ss_pred CCCccCCCCcchhCChHHHHHHHHH--cCC-------CCCcCCCCCcchh
Confidence 4578999999999999999999775 432 3579999999864
No 61
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=96.32 E-value=0.00079 Score=44.77 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=34.6
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|..||+.|......+.|... -|.. ...+|.|+.||+.+
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~-~H~~------~~~~~~C~~C~k~f 50 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVT-SHKR------NVKVYPCPFCFKEF 50 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHH-HSSS------SCCCEECTTTCCEE
T ss_pred CcceECCCCcchhCCHHHHHHHHHH-HcCC------CCcCeECCCCCCcc
Confidence 4679999999999999999999876 3421 13579999999964
No 62
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=96.24 E-value=0.0017 Score=44.25 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=34.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..|++.|......+.|... |.. ..+|.|+.|++.+
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~-------~~~~~C~~C~~~f 52 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRV--HTG-------EKPYKCLECGKAF 52 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHG--GGC-------SCCEECSSSCCEE
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHh--cCC-------CCCeECCCCCccc
Confidence 35679999999999999999999764 542 3579999999964
No 63
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.19 E-value=0.0074 Score=42.30 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHhCCCC---HHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 110 EPEVDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 110 ~~~vd~~~l~qL~eMGF~---~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
.+.+.++.+++|.+| || ...++.+|.+.+| +++.|++-|++..++
T Consensus 5 ~~~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEE 52 (59)
T ss_dssp SSSSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCC
T ss_pred CCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCC
Confidence 456789999999999 75 5888999999877 999999999997554
No 64
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.18 E-value=0.0017 Score=44.26 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=34.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..|++.|......+.|... |.. ..+|.|+.||+.+
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~-------~~~~~C~~C~k~f 55 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTV--HTG-------EKPYRCNICGAQF 55 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHH--HCC-------CCSEECTTTCCEE
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHH--cCC-------CCCEECCCCCchh
Confidence 35679999999999999999999765 532 2569999999964
No 65
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=96.10 E-value=0.004 Score=38.42 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=32.4
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG 49 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg 49 (229)
....++|..||+.|......+.|... |.. ..++.|+.||
T Consensus 7 ~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~-------~~~~~C~~cg 45 (45)
T 2epq_A 7 GEKPYSCPVCGLRFKRKDRMSYHVRS--HDG-------SVGKSGPSSG 45 (45)
T ss_dssp SCCSSEETTTTEECSCHHHHHHHHHH--HSC-------CCCCCCCCCC
T ss_pred CCCCCcCCCCCcccCCHHHHHHHHHH--ccC-------CCCCCCcCCC
Confidence 35679999999999999999999765 653 3579999997
No 66
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=96.10 E-value=0.0025 Score=43.81 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=35.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..|++.|......+.|... -|.. ...+|+|+.|++.+
T Consensus 12 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~h~~------~~~~~~C~~C~~~f 55 (77)
T 2ct1_A 12 GEKPYECYICHARFTQSGTMKMHILQ-KHTE------NVAKFHCPHCDTVI 55 (77)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHH-HSSS------SCSSEECSSSSCEE
T ss_pred CCCCeECCCcCchhCCHHHHHHHHHH-hcCC------CCCccCCCCCCCcc
Confidence 35679999999999999999999875 3432 13579999999964
No 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=96.04 E-value=0.0021 Score=43.36 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=34.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..|++.|......+.|... |.. ..+|.|+.|++.+
T Consensus 6 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~~~f 47 (70)
T 1x5w_A 6 SGHPEKCSECSYSCSSKAALRIHERI--HCT-------DRPFKCNYCSFDT 47 (70)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHGG--GCC-------SCSEECSSSSCEE
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHH--cCC-------CCCEeCCCCCCcc
Confidence 35689999999999999999999854 642 2569999999964
No 68
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=95.98 E-value=0.01 Score=42.52 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 111 ~~vd~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
..++.+.|.+|.+ -|.+...|++||..+++ |++.|++||...
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~k 48 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHKE 48 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3466788989886 59999999999999988 999999999765
No 69
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.96 E-value=0.0047 Score=44.84 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=34.1
Q ss_pred cceeeccccccccC-CHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLR-SVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~-~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|..||+.|. .....+.|... |.. ...+|.|+.|++.+
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~------~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEV--CQK------LQDALKCQHCRKQF 64 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHH--HHH------HHHHHSCSSSCCCC
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHH--HcC------CCCCEECCCCCCcc
Confidence 46799999999999 99999999855 421 14689999999974
No 70
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.94 E-value=0.0028 Score=46.54 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=34.2
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|..||+.|........|... |.. ..+|.|+.|++.+
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F 66 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRL--LHA-------AQVFPCKYCPATF 66 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHT--TSC-------SSSEECTTSSCEE
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhh--ccC-------CCccCCCCCCCEe
Confidence 4568999999999999999999754 642 2679999999964
No 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.75 E-value=0.0055 Score=42.00 Aligned_cols=45 Identities=29% Similarity=0.505 Sum_probs=34.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..||+.|......+.|... |..= ....+|.|+.||+.+
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~----~~~~~~~C~~C~k~f 48 (78)
T 2d9h_A 4 GSSGLQCEICGFTCRQKASLNWHQRK--HAET----VAALRFPCEFCGKRF 48 (78)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHH--HHHH----TTTCCEECTTTCCEE
T ss_pred CCcCeECCCCCCeeCCHHHHHHHHHH--hhcc----CCCcccCCCCCCchh
Confidence 45789999999999999999999755 3210 014679999999963
No 72
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.72 E-value=0.017 Score=42.18 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=34.1
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|..||+.|......+.|...+||. .+ ...+.|+.|++.+
T Consensus 17 ~~~~~C~~C~k~f~~~~~L~~H~~~~~h~--~~----~~~~~C~~C~~~f 60 (115)
T 2dmi_A 17 ASKFRCKDCSAAYDTLVELTVHMNETGHY--RD----DNHETDNNNPKRW 60 (115)
T ss_dssp CCSEEBSSSSCEESSHHHHHHHHHHTCCC--BC----SCCCCCCCCCSCC
T ss_pred CCCEECCccCchhcCHHHHHHHHHHhCcc--cc----CCCccCCCCCccc
Confidence 46799999999999999999999877773 22 1234588888763
No 73
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=95.70 E-value=0.0066 Score=41.79 Aligned_cols=45 Identities=29% Similarity=0.569 Sum_probs=34.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC-CCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS-NFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~-nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..|++.|......+.|... -|. ++.+ .+|+|+.|++.+
T Consensus 12 ~~k~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~-----~~~~C~~C~~~f 57 (86)
T 1x6h_A 12 GEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVP-----AAFVCSKCGKTF 57 (86)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHHHH-TTCSSCCC-----CCEECSSSCCEE
T ss_pred CCCCCcCCCCCCccCCHHHHHHHHHH-hcCCcCCC-----cceECCCCCChh
Confidence 34679999999999999999999876 332 2211 369999999963
No 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=95.69 E-value=0.0045 Score=42.46 Aligned_cols=42 Identities=24% Similarity=0.547 Sum_probs=34.4
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~ 53 (229)
...++|..|++.|......+.|... |.. ..+|+|+.|++.+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRT--HTG-------EKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTT--TCC-------SCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHH--cCC-------CcCeeCCCCCCccC
Confidence 4679999999999999999999753 643 25799999999643
No 75
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=95.53 E-value=0.0074 Score=45.65 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=36.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..||+.|........|... -|+...+ ..+|+|+.||+.+
T Consensus 15 gekpy~C~~Cgk~F~~~~~L~~H~r~-~H~~~~~----ekpf~C~~Cgk~F 60 (102)
T 2ghf_A 15 VEGGYECKYCTFQTPDLNMFTFHVDS-EHPNVVL----NSSYVCVECNFLT 60 (102)
T ss_dssp CCSSEECSSCSCEESCHHHHHHHHHH-HCSSCCC----SCCEEETTTTEEE
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHh-hCCCCCC----CCCcCCCCCCccc
Confidence 45679999999999999999999865 4655322 2579999999964
No 76
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=95.51 E-value=0.012 Score=43.13 Aligned_cols=42 Identities=29% Similarity=0.548 Sum_probs=34.6
Q ss_pred ceeecccccccc-CCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011 4 VSLKCGDCGALL-RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (229)
Q Consensus 4 ~slkC~~Cg~~L-~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~ 55 (229)
..++|+.||+.| ......+.|... | .+ .+|+|+.||+.+...
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~--h---~~-----k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMEN--C---KQ-----EMFTCHHCGKQLRSL 75 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHH--H---CC-----CCCCCSSSCCCCSSH
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHH--H---CC-----CCeECCCCCCeeCCH
Confidence 468999999999 899999999876 5 22 579999999975443
No 77
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.39 E-value=0.016 Score=35.52 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=31.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2eq4_A 9 GEKLYNCKECGKSFSRAPCLLKHERL--HSG-------EKPSGPSSG 46 (46)
T ss_dssp CCCCCCBTTTTBCCSCHHHHHHHHHH--CCS-------SSCCCCCCC
T ss_pred CCCCeECCCCCCccCchHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 35679999999999999999999754 653 357999887
No 78
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.34 E-value=0.014 Score=35.94 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=31.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2emy_A 9 GENPYECHECGKAFSRKYQLISHQRT--HAG-------EKPSGPSSG 46 (46)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHH--HTT-------SCCSCSSCC
T ss_pred CCcCcCCCCCCcccCcHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999654 652 257999887
No 79
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=95.27 E-value=0.015 Score=35.89 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=31.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2emk_A 9 GEKPYECKECGKAFSQTTHLIQHQRV--HTG-------EKPSGPSSG 46 (46)
T ss_dssp SSCSCBCSSSCCBCSCHHHHHHHHHH--HSS-------CCCSSCCCC
T ss_pred CCCceECCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999864 643 257999887
No 80
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.26 E-value=0.012 Score=36.28 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ytq_A 9 GEKPYGCSECGKAFSSKSYLIIHMR--THSG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSCBCSSSCCBCSCHHHHHHHHT--TTCC-------SCSSCCCCC
T ss_pred CCCCcCCCccChhhCChHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999964 3753 257899887
No 81
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.02 Score=35.22 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=30.9
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |+. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2enc_A 9 GEKPFKCEECGKGFYTNSQCYSHQRS--HSG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--SCC-------SSCCSSCCC
T ss_pred CCCCcCCCCCCCcCCChHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 35679999999999999999999654 643 257899887
No 82
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.13 E-value=0.018 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=30.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|+|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2eov_A 9 GEKPYKCSDCGKSFTWKSRLRIHQKC--HTG-------ERHSGPSSG 46 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHHHH--HSC-------CSSCCSCCC
T ss_pred CCCCccCCccChhhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 34679999999999999999999654 642 256899887
No 83
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.13 E-value=0.02 Score=35.17 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=30.9
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~c 46 (46)
T 2ytj_A 9 GEKPYICAECGKAFTIRSNLIKHQKI--HTK-------QKPSGPSSG 46 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHH--TSC-------CCCSSCSCC
T ss_pred CCcCeECCCCChhhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999754 652 257899877
No 84
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.13 E-value=0.017 Score=35.54 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=30.9
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~c 46 (46)
T 2ytk_A 9 GEKPYKCNECGKVFTQNSHLTNHWRI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp SSCSEECSSSCCEESSHHHHHHHHHH--HSS-------SSCSSCCCC
T ss_pred CCCCEeCCcCCCccCCHHHHHHHHHH--HCC-------CCCCCCCCC
Confidence 35679999999999999999999764 542 257899887
No 85
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.10 E-value=0.018 Score=35.40 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=31.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~c 46 (46)
T 2ep2_A 9 GEKPYECSICGKSFTKKSQLHVHQQ--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHH--TTSS-------CCSCCSCCC
T ss_pred CCcCcCCCCCCcccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999975 4653 257899887
No 86
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.08 E-value=0.016 Score=35.67 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2eml_A 9 GEKPYECSVCGKAFSHRQSLSVHQRI--HSG-------KKPSGPSSG 46 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHGG--GSS-------CCCSCSSCC
T ss_pred CCCCeeCCCcCCccCCHHHHHHHHHH--hcC-------CCCCCCCCC
Confidence 35679999999999999999999643 643 257899887
No 87
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=95.07 E-value=0.016 Score=35.74 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2el6_A 9 GVNPYKCSQCEKSFSGKLRLLVHQR--MHTR-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHG--GGCC-------SSCCSCCCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999954 3653 357899887
No 88
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.05 E-value=0.019 Score=35.22 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=30.9
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2emm_A 9 GERPHKCNECGKSFIQSAHLIQHQRI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--HSC-------CCTTSSSCC
T ss_pred CCCCeeCCCCChhhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 35679999999999999999999654 642 257999887
No 89
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.05 E-value=0.018 Score=35.37 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~c 46 (46)
T 2eq0_A 9 GEKPYKCHECGKVFRRNSHLARHQL--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHT--TTCC-------CCCSCCSCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999953 4752 257899887
No 90
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.05 E-value=0.018 Score=35.39 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2ytd_A 9 GEKPYKCSECGKAFHRHTHLNEHRRI--HTG-------YRPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--HTC-------CCSSCSSCC
T ss_pred CCcCeECCCCCCeeCChHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999654 653 257899887
No 91
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.05 E-value=0.014 Score=35.80 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2eoe_A 9 GEKPYKCNECGKVFTQNSHLANHQR--IHTG-------VKPSGPSSG 46 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHG--GGSC-------CCSCSSCCC
T ss_pred CCCCeECCCcChhhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999974 3642 357999887
No 92
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=95.03 E-value=0.015 Score=35.84 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~c 46 (46)
T 2ema_A 9 GEKRYKCNECGKVFSRNSQLSQHQKI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp TSCCEECSSSCCEESSHHHHHHHHTG--GGC-------CCCCSSSCC
T ss_pred CCcCcCCCCCcchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 35679999999999999999999643 642 257899887
No 93
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.03 E-value=0.016 Score=35.67 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=31.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... .|+. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~-~H~~-------~k~~~C~~C 47 (47)
T 2epx_A 9 GKKPYECIECGKAFIQNTSLIRHWRY-YHTG-------EKPSGPSSG 47 (47)
T ss_dssp CCCSBCCSSSCCCBSSHHHHHHHHTT-TTTT-------SCSSSCCCC
T ss_pred CCCCEECCccCchhCChHHHHHHhHh-hcCC-------CCCCCCCCC
Confidence 35679999999999999999999763 4642 257899887
No 94
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.01 E-value=0.013 Score=36.04 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2em7_A 9 GEKPYKCEECGKGFICRRDLYTHHM--VHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHGG--GGTT-------CCCSSTTCC
T ss_pred CCcCccCCCccchhCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999954 3642 357899887
No 95
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.01 E-value=0.014 Score=35.88 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=30.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ytn_A 9 GKKPYKCNECGKVFTQNSHLARHRG--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCSSCBCTTTCCBCSSHHHHHHHGG--GTSC-------CCCCSCCCC
T ss_pred CCcCeECCCCCCeeCCHHHHHHHhh--hcCC-------CCCCCCCCC
Confidence 3567999999999999999999954 3652 257899887
No 96
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=95.00 E-value=0.02 Score=35.13 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2epw_A 9 GEKPCKCTECGKAFCWKSQLIMHQRT--HVD-------DKHSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHH--CCS-------CCCSCCCCC
T ss_pred CCCCeeCCCCCCccCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 35679999999999999999999754 643 256899887
No 97
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=94.99 E-value=0.012 Score=41.42 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=14.2
Q ss_pred ceeeccccccccCCHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
..++|..|++.|......+.|..
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~ 29 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMR 29 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGG
T ss_pred cCeECCCCCCccCCHHHHHHHHH
Confidence 45566666666666666666654
No 98
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.99 E-value=0.016 Score=35.56 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|.. .|.. ..+|+|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2en8_A 9 GEKSHTCDECGKNFCYISALRIHQR--VHMG-------EKCSGPSSG 46 (46)
T ss_dssp CCSSEECTTTCCEESSHHHHHHHHT--TTCC-------SCSSCCSCC
T ss_pred CCCCeECCCcCcccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999963 4653 257999887
No 99
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.98 E-value=0.017 Score=35.49 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=30.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2eop_A 9 GEKPHECRECGKSFSFNSQLIVHQR--IHTG-------ENPSGPSSG 46 (46)
T ss_dssp CCCSCBCTTTCCBCSSHHHHHHHHT--TTTT-------SCCSCCCCC
T ss_pred CCCCeeCCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999964 3652 257899887
No 100
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.98 E-value=0.02 Score=34.84 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... |.. ..+|.|+.|
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 44 (44)
T 2emx_A 7 GEKPFGCSCCEKAFSSKSYLLVHQQT--HAE-------EKPSGPSSG 44 (44)
T ss_dssp SCCCEECSSSSCEESSHHHHHHHHHH--HTS-------SCSCSCCCC
T ss_pred CCcCccCCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 35679999999999999999999754 642 256899887
No 101
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=94.98 E-value=0.0099 Score=41.74 Aligned_cols=40 Identities=28% Similarity=0.568 Sum_probs=26.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
...++|..|++.|......+.|... |.. ..+|.|+.|++.
T Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~ 44 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVYHLNRHKLS--HSG-------EKPYSCPVCGLR 44 (95)
T ss_dssp CSCEECSSSCCEESSSHHHHHHHHH--SCS-------SCSEECSSSCCE
T ss_pred CCCeECCCCCCccCChHHHHHHHHh--cCC-------CCCCcCCCCCCc
Confidence 4567888888888888888888654 432 134666666664
No 102
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=94.98 E-value=0.011 Score=44.24 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=33.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~ 53 (229)
...++|+.||+.|......+.|... | + .+|.|+.||+.+.
T Consensus 72 ~~~~~C~~C~k~f~~~~~l~~H~~~--H----~-----~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 72 ISQFVCPLCLMPFSSSVSLKQHIRY--T----E-----HTKVCPVCKKEFT 111 (129)
T ss_dssp HCSEECTTTCCEESSHHHHHHHHHH--T----C-----CCCBCTTTCCBCS
T ss_pred CCCeECCCCCcccCCHhHHHHHHHH--C----C-----CCCCCCCCCcccC
Confidence 3578999999999999999999865 6 2 4699999999753
No 103
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.98 E-value=0.018 Score=35.42 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=31.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2en6_A 9 GEKPYGCNECGKTFSQKSILSAHQRT--HTG-------EKPSGPSSG 46 (46)
T ss_dssp SSCCEEETTTTEEESSHHHHHHHHHH--HSS-------CCCSSSCCC
T ss_pred CCcCeECCCCCcccCchHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999765 642 257899887
No 104
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.96 E-value=0.016 Score=35.73 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~c 46 (46)
T 2emf_A 9 GGKHFECTECGKAFTRKSTLSMHQKI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp SSCCEECSSSCCEESCHHHHHHHGGG--TSC-------SSCSCCCCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 35679999999999999999999753 642 257899887
No 105
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.94 E-value=0.012 Score=39.30 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=31.7
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC-CCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA-TCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~-~Cg~~~ 52 (229)
...++|..||+.|. ....+.|...+| ..+|+|+ .||+.+
T Consensus 8 ~~~~~C~~C~k~f~-~~~L~~H~~~~~----------~~p~~C~~~C~k~f 47 (66)
T 2eod_A 8 KRTQPCTYCTKEFV-FDTIQSHQYQCP----------RLPVACPNQCGVGT 47 (66)
T ss_dssp CCEEECSSSCCEEE-HHHHHHHHHHCS----------SSEEECTTCCSCCE
T ss_pred CCCeeccccCCccC-HHHHHHHHHHcC----------CcCccCCcccCccc
Confidence 45799999999999 999999975422 2579999 999963
No 106
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.92 E-value=0.025 Score=34.77 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2eoq_A 9 GEKPFKCDICGKSFCGRSRLNRHSMV--HTA-------EKPSGPSSG 46 (46)
T ss_dssp SSCSCCCSSSCCCCSSHHHHHHHHHH--TTC-------CCSSSCCCC
T ss_pred CCCCcCCCcCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 34679999999999999999999654 642 257899887
No 107
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=94.92 E-value=0.011 Score=39.61 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=29.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
....++|..||+.|......+ + -|.. ..+|+|+.||+.+
T Consensus 11 ~~k~~~C~~C~k~F~~~~~l~----~-~H~~-------~k~~~C~~C~k~f 49 (62)
T 1vd4_A 11 NRASFKCPVCSSTFTDLEANQ----L-FDPM-------TGTFRCTFCHTEV 49 (62)
T ss_dssp SSSEEECSSSCCEEEHHHHHH----H-EETT-------TTEEBCSSSCCBC
T ss_pred CCCCccCCCCCchhccHHHhH----h-hcCC-------CCCEECCCCCCcc
Confidence 356799999999998765544 4 4542 3579999999964
No 108
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.91 E-value=0.02 Score=35.16 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|........|... |.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2yso_A 9 REKSHQCRECGEIFFQYVSLIEHQVL--HMG-------QKNSGPSSG 46 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHHH--HSC-------CSCCCTTCC
T ss_pred CCCCEEccccChhhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 34679999999999999999999754 542 257899887
No 109
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.88 E-value=0.019 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=30.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2ytr_A 9 GEKPYKCNECGKAFSQTSKLARHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp SCCTTCCTTTCCCCSSHHHHHHHHT--TTTT-------CSCCCSCCC
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 3567899999999999999999954 4652 257999887
No 110
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.88 E-value=0.016 Score=35.69 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|........|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~c 46 (46)
T 2emh_A 9 GERPYICTVCGKAFTDRSNLIKHQKI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHH--HHC-------SSCSSSCCC
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 35679999999999999999999754 532 257899887
No 111
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=94.87 E-value=0.017 Score=35.63 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=30.9
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2ely_A 9 GEKPFKCVECGKGFSRRSALNVHHKL--HTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSBCCSSSCCCBSSTTHHHHHHHH--HSC-------CSSCSCCCC
T ss_pred CCCCcccCccCcccCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999764 652 257899887
No 112
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=94.86 E-value=0.017 Score=35.42 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2el4_A 9 GVKPYGCSQCAKTFSLKSQLIVHQR--SHTG-------VKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHGG--GSSS-------CCCSCCTTC
T ss_pred CCCceECCCCCchhCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999964 3652 257899887
No 113
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.83 E-value=0.02 Score=35.35 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2eoo_A 9 GERPYGCNECGKNFGRHSHLIEHLKR--HFR-------EKSSGPSSG 46 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHHH--HHS-------TTSSCCSCC
T ss_pred CCCCEEccccCcccCCHHHHHHHHHH--HcC-------CCCCCCCCC
Confidence 35679999999999999999999654 542 357899887
No 114
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.82 E-value=0.018 Score=35.37 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ene_A 9 GEKPYKCNECGKVFRHNSYLSRHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHT--TTCC-------CCCCSCCCC
T ss_pred CCCCeECCCCCchhCChHHHHHHHh--hcCC-------CCCCCCCCC
Confidence 3567999999999999999999964 3652 257899887
No 115
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.81 E-value=0.019 Score=35.28 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..|++.|......+.|.. .|.. ..+|+|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ep0_A 9 GEKPYKCDVCHKSFRYGSSLTVHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp TCCSEECSSSCCEESSHHHHHHHHT--TTSS-------SCCCSCCCC
T ss_pred CCCCeeCcccCcccCChHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999954 4753 257899887
No 116
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.80 E-value=0.017 Score=35.58 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2em8_A 9 GEKPYKCVECGKGYKRRLDLDFHQRV--HTG-------EKLSGPSSG 46 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHH--HHC-------CCCCCSCCC
T ss_pred CCCCeECcccCchhCCHHHHHHHHHH--HcC-------CCCCCCCCC
Confidence 35679999999999999999999765 542 256899887
No 117
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.77 E-value=0.022 Score=34.95 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|........|.. .|.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2eme_A 9 GEKPYVCDYCGKAFGLSAELVRHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHG--GGCC-------CSCCSSCCC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 3567999999999999999999974 4642 257899887
No 118
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=94.76 E-value=0.015 Score=42.51 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=33.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccc
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~ 58 (229)
....++|..|++.|......+.|... |.. ..++.|+.|++.+.+....
T Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~~~l 51 (124)
T 2dlq_A 4 GSSGVECPTCHKKFLSKYYLKVHNRK--HTG-------EKPFECPKCGKCYFRKENL 51 (124)
T ss_dssp CCSSCCCTTTCCCCSSHHHHHHHHHH--HSS-------CCSCBCTTTCCBCSSHHHH
T ss_pred CCCCCCCCCCCCcCCCHHHHHHHHHh--CCC-------CCCeECCCCCchhcCHHHH
Confidence 34568888899888888888888764 432 2467888888765444333
No 119
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.75 E-value=0.018 Score=35.39 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=30.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2ysp_A 9 GEKPYKCEKCGKGYNSKFNLDMHQKV--HTG-------ERPSGPSSG 46 (46)
T ss_dssp SCCSEEETTTTEEESCHHHHHHHHTT--SCS-------CCSSCCSCC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHh--hCC-------CCCCCCCCC
Confidence 35679999999999999999999643 653 256899887
No 120
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=94.73 E-value=0.0075 Score=42.36 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=34.6
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcc
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~ 56 (229)
..++|..||+.|......+.|... |.. ..+|.|+.||+.+.+..
T Consensus 2 k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~k~f~~~~ 45 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLTTHIRT--HTG-------EKPFACDICGRKFARSD 45 (88)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHH--HHC-------CCCEECTTTCCEESSHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHHH--cCC-------CCCccCCCCCCccCCHH
Confidence 468999999999999999999764 532 25799999999754433
No 121
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=94.73 E-value=0.023 Score=41.17 Aligned_cols=41 Identities=29% Similarity=0.406 Sum_probs=32.3
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~ 54 (229)
...++|..|++.|......+.|... |. .+|.|+.|++.+..
T Consensus 14 ~~~~~C~~C~~~f~~~~~l~~H~~~--H~---------~~~~C~~C~~~f~~ 54 (107)
T 1wjp_A 14 KEVYQCRLCNAKLSSLLEQGSHERL--CR---------NAAVCPYCSLRFFS 54 (107)
T ss_dssp CCCCBCTTTCCBCSSHHHHHHHHHH--HH---------HSBCCTTTCCCBSS
T ss_pred CcCeECCCCCCccCCHHHHHHHHHH--CC---------CCccCCCCCCccCC
Confidence 4568999999999999999999766 51 46889999887543
No 122
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=94.72 E-value=0.024 Score=39.69 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=35.4
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~ 55 (229)
...++|..|++.|......+.|... |..= ...+|.|+.|++.+.+.
T Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~-----~~~~~~C~~C~~~f~~~ 78 (95)
T 2yt9_A 33 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGS-----VGKPYICQSCGKGFSRP 78 (95)
T ss_dssp SCSEECSSSCCEESCHHHHHHHHHH--HCCC-----CCSSBCCSSSCCCBSSH
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHH--hcCC-----CCCceECCCccchhCCH
Confidence 4579999999999999999999865 3321 12579999999975433
No 123
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.72 E-value=0.019 Score=35.34 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|........|... |.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2emp_A 9 GVKPYMCNECGKAFSVYSSLTTHQVI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHHHH--HHC-------CSCCSCCCC
T ss_pred CCcCeECCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999754 532 257899887
No 124
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.71 E-value=0.021 Score=35.14 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2epz_A 9 GEKPFDCIDCGKAFSDHIGLNQHRR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSBCCTTTCCCBSSHHHHHHHHT--TTTT-------CCCCSSCCC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3467999999999999999999964 4642 257999887
No 125
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=94.70 E-value=0.022 Score=40.80 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=29.9
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~ 54 (229)
...++|..|++.|......+.|... |.. ..+|.|+.|++.+.+
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERT--HTD-------ERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHH--HCC-------SCCCBCSSSCCBCSC
T ss_pred CcCeECCCCCCccCCHHHHHHHHHH--cCC-------CCCcCCCCccchhCC
Confidence 3467888888888888888888764 332 245777777776433
No 126
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=94.67 E-value=0.02 Score=35.16 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=30.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|+.||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2em0_A 9 GEKTWKCRECDMCFSQASSLRLHQNV--HVG-------EKPSGPSSG 46 (46)
T ss_dssp CCCCCCCSSSCCCCSSHHHHHHHGGG--GSS-------SSCSCSSCC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHH--cCC-------CCCcCCCCC
Confidence 35679999999999999999999643 643 256899887
No 127
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.65 E-value=0.018 Score=35.62 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2ytm_A 9 GEKPYKCMECGKAFGDNSSCTQHQRL--HTG-------QRPSGPSSG 46 (46)
T ss_dssp SCCSSSBTTTTBCCSSHHHHHHHHHH--HHS-------CCCCCCCCC
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 35679999999999999999999765 542 257899887
No 128
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.65 E-value=0.019 Score=35.45 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2elz_A 9 VEKPYKCEDCGKGYNRRLNLDMHQR--VHMG-------EKTSGPSSG 46 (46)
T ss_dssp CCSSCBCSSSCCBCSSHHHHHHHGG--GGGS-------CCCCCSCCC
T ss_pred CCCCeeCcccCchhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 3567999999999999999999965 3642 257899887
No 129
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=94.65 E-value=0.017 Score=41.38 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=36.1
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccc
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~ 58 (229)
...++|..|++.|......+.|... |.. ..+|+|+.|++.+.+....
T Consensus 43 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~~~L 89 (106)
T 2ee8_A 43 ERPYTCDICHKAFRRQDHLRDHRYI--HSK-------EKPFKCQECGKGFCQSRTL 89 (106)
T ss_dssp SCCCBCSSSCCBCSCHHHHHHHGGG--SCC-------CCTTSCSSSCCCCSSHHHH
T ss_pred CCCcCCCCccchhCCHHHHHHHHHH--hCC-------CCCeECCCcCCcccCHHHH
Confidence 3568999999999999999999643 542 2569999999976444333
No 130
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=94.62 E-value=0.01 Score=41.70 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=35.2
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~ 55 (229)
...++|..|++.|......+.|... |.. ..+|+|+.|++.+.+.
T Consensus 34 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~ 77 (96)
T 2dmd_A 34 VKPYKCKTCDYAAADSSSLNKHLRI--HSD-------ERPFKCQICPYASRNS 77 (96)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHH--SCC-------CCCEECSSSSCEESSH
T ss_pred CCCEeCCCCCCccCCHHHHHHHHHH--hCC-------CCCccCCCCCCccCCH
Confidence 3568999999999999999999875 532 2569999999975443
No 131
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.57 E-value=0.024 Score=34.96 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=30.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|+|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2em5_A 9 STKSHQCHECGRGFTLKSHLNQHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CSCSEECSSSCCEESSHHHHHHHHT--TTSC-------SCCSSCCCC
T ss_pred CCCCeECCcCCCccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3467999999999999999999963 3642 257899887
No 132
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.54 E-value=0.019 Score=35.35 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=30.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2en1_A 9 GEKPFKCEECGKRFTQNSQLHSHQR--VHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGG--GGSC-------CCCSCCCCC
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999974 3643 257899887
No 133
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=94.52 E-value=0.022 Score=34.95 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=30.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|+|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2em9_A 9 GEKPYNCKECGKSFRWASCLLKHQR--VHSG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHGG--GGTS-------CCCCSTTCC
T ss_pred CCcCeECCccccccCChHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 3567999999999999999999954 3652 257899887
No 134
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=94.49 E-value=0.012 Score=40.75 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=10.1
Q ss_pred eeeccccccccCCHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHA 25 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha 25 (229)
.++|..||+.|......+.|.
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~ 54 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLTTHI 54 (90)
T ss_dssp CEECTTTCCEESCHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHH
Confidence 344444544444444444443
No 135
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.44 E-value=0.015 Score=35.74 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=30.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2yu8_A 9 GEKPYKCNECGKVFTQNSHLARHRRV--HTG-------GKPSGPSSG 46 (46)
T ss_dssp CCSSEECSSSCCEESSSHHHHHHTHH--HHS-------CCCSCSCCC
T ss_pred CCCCeECCcCCchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 45679999999999999999999654 532 257899887
No 136
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=94.41 E-value=0.011 Score=40.20 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=10.6
Q ss_pred eeccccccccCCHHHHHHHHH
Q 027011 6 LKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 6 lkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
++|..||+.|......+.|..
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~ 22 (82)
T 2kmk_A 2 FDCKICGKSFKRSSTLSTHLL 22 (82)
T ss_dssp EECSSSCCEESSHHHHHHHHH
T ss_pred ccCCCCcccccCchhHHHHHH
Confidence 445555555555555555543
No 137
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=94.33 E-value=0.027 Score=38.21 Aligned_cols=52 Identities=23% Similarity=0.483 Sum_probs=30.0
Q ss_pred cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC--CCCCCCCcccccccc
Q 027011 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHR 62 (229)
Q Consensus 3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~--Cg~~~~~~~E~~~a~ 62 (229)
...++|.- |++.|......+.|... .|.. ..+|.|+. |++.+.+......+.
T Consensus 5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~-~H~~-------~~~~~C~~~~C~k~f~~~~~L~~H~ 60 (79)
T 2dlk_A 5 SSGMPCDFPGCGRIFSNRQYLNHHKKY-QHIH-------QKSFSCPEPACGKSFNFKKHLKEHM 60 (79)
T ss_dssp CSSEECSSTTTCCEESSHHHHHHHHHH-GGGS-------CCCEECSCTTTCCEESSHHHHHHHH
T ss_pred CCCccCCCCCCcCccCCHHHHHHHHHH-HhCC-------CCCeECCCCCCcCccCCHHHHHHHH
Confidence 34566664 77777777777777653 3432 23466766 766655544443333
No 138
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=94.30 E-value=0.011 Score=46.16 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=28.7
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...|+|+.||+.|......+.|... |+. ..+|.|+.||+.+
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F 60 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNI--HSW-------EKKYPCRYCEKVF 60 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHH--HHC-------CSCEECSSSSCEE
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHH--cCC-------CCCeeCCccCeec
Confidence 3567888888888888888888653 532 2457777777754
No 139
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.30 E-value=0.036 Score=34.11 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=30.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~~ 46 (46)
T 2em2_A 9 GEKPFKCKECGKAFRQNIHLASHLRI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--HCC-------CCSSCSSCC
T ss_pred CCCCEECCcCCchhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence 35679999999999999999999764 542 256888865
No 140
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=94.20 E-value=0.02 Score=41.40 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=29.1
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~ 54 (229)
...++| .|++.|......+.|... |.. ..+|.|+.|++.+.+
T Consensus 8 ~k~~~C-~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~ 49 (110)
T 2csh_A 8 DKLYPC-QCGKSFTHKSQRDRHMSM--HLG-------LRPYGCGVCGKKFKM 49 (110)
T ss_dssp CCCEEC-TTSCEESSHHHHHHHHHH--HSC-------CCSEECTTTSCEESS
T ss_pred CCCEec-cCCCccCCHHHHHHHHHH--cCC-------CcCccCCCCCcccCC
Confidence 456888 788888888888888765 332 245778888775433
No 141
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.07 E-value=0.034 Score=34.12 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=30.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~~ 46 (46)
T 2ep3_A 9 GEKPYRCAECGKAFTDRSNLFTHQK--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHT--TTTT-------SCCCCTTCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999974 3642 257888765
No 142
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=94.02 E-value=0.016 Score=35.66 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=30.4
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ytg_A 9 GEKPFKCGECGKSYNQRVHLTQHQR--VHTG-------EKPSGPSSG 46 (46)
T ss_dssp SCCSEECTTTCCEESSSHHHHTTGG--GGSS-------CCSSCSCCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3567999999999999999999963 3642 257899887
No 143
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=93.91 E-value=0.021 Score=38.66 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=33.7
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~ 53 (229)
...++|..|++.+......+.|... |.. ..++.|+.||+.+.
T Consensus 27 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 27 TRPYPCQYCGKRFHQKSDMKKHTFI--HTG-------EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHH--HHT-------CCCEECTTTSCEES
T ss_pred CCCeeCCcCChhhCCHHHHHHHHHH--hcC-------CCCCcCCCcchhhC
Confidence 3568999999999999999999764 321 35799999999643
No 144
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=93.83 E-value=0.037 Score=40.32 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=27.8
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
..++|..|++.|......+.|... -|..-. ..++.|+.|++.+
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~-----~~~~~C~~C~~~f 76 (124)
T 2dlq_A 34 KPFECPKCGKCYFRKENLLEHEAR-NCMNRS-----EQVFTCSVCQETF 76 (124)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHHH-CCCCSC-----CCCEECSSSCCEE
T ss_pred CCeECCCCCchhcCHHHHHHHHhh-hhcCCC-----CCCeECCCCCCcc
Confidence 457788888888888888888765 222111 2356777777754
No 145
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=93.79 E-value=0.012 Score=45.88 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=33.0
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~ 54 (229)
...++|+.||+.|........|... |+. ..++.|+.||+.+.+
T Consensus 48 ~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 48 EKKYPCRYCEKVFPLAEYRTKHEIH--HTG-------ERRYQCLACGKSFIN 90 (133)
T ss_dssp CSCEECSSSSCEESSHHHHHHHHHH--HHT-------CCCEEESSSCCEESS
T ss_pred CCCeeCCccCeecccccchhhhccc--cCC-------CccccCCCCCCCcCC
Confidence 4578999999999999999999653 632 357899999986533
No 146
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=93.70 E-value=0.026 Score=34.77 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=29.8
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
...++|..||+.|......+.|... |.. ..+|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2ytt_A 10 EKPYQCSECGKSFSGSYRLTQHWIT--HTR-------EKPSGPSSG 46 (46)
T ss_dssp CCTTCCSSSCCCCSSHHHHHHHHTH--HHH-------CCCCSCCCC
T ss_pred CCCeeCCCCCcccCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 4678999999999999999999654 531 357899887
No 147
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=93.63 E-value=0.018 Score=41.70 Aligned_cols=41 Identities=22% Similarity=0.512 Sum_probs=33.4
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|..|++.|......+.|... |.. ..+|.|+.|++.+
T Consensus 35 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 75 (110)
T 2csh_A 35 LRPYGCGVCGKKFKMKHHLVGHMKI--HTG-------IKPYECNICAKRF 75 (110)
T ss_dssp CCSEECTTTSCEESSSHHHHHHHTT--TCC-------CCCEECSSSCCEE
T ss_pred CcCccCCCCCcccCCHHHHHHHHHH--cCC-------CCCeeCCCCcchh
Confidence 3569999999999999999999653 532 2569999999964
No 148
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=93.62 E-value=0.016 Score=41.97 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=33.4
Q ss_pred eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~ 55 (229)
.++|..|++.|......+.|. + |.. ..+|.|+.|++.+...
T Consensus 42 ~~~C~~C~~~f~~~~~l~~H~-~--H~~-------~~~~~C~~C~~~f~~~ 82 (107)
T 1wjp_A 42 AAVCPYCSLRFFSPELKQEHE-S--KCE-------YKKLTCLECMRTFKSS 82 (107)
T ss_dssp SBCCTTTCCCBSSHHHHHHHH-H--HCS-------TGGGEEGGGTEECSSH
T ss_pred CccCCCCCCccCCHHHHHHHH-H--cCC-------CCCccCccccchhCCH
Confidence 589999999999999999997 3 652 3579999999975433
No 149
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=93.59 E-value=0.023 Score=38.16 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=32.9
Q ss_pred cceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|. .||+.|......+.|... |.. ..+|.|+.||+.+
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 59 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELTRHIRI--HTG-------QKPFQCRICMRNF 59 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHHHHHHH--HHC-------CCCEECTTTCCEE
T ss_pred CCccCCcCCCCCCccCCHHHHHHHHHh--hCC-------CCCeECCCCCchh
Confidence 4679997 699999999999999654 431 3569999999964
No 150
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.92 E-value=0.066 Score=37.50 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=33.1
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchh-hhhhhccCCCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCR 53 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~-E~vl~l~C~~Cg~~~~ 53 (229)
.+++|..|++.|........|... -|..=.... -.-..+.|+.||+.+.
T Consensus 24 ~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~~~~~~~~c~~~~C~~C~k~f~ 73 (95)
T 2ej4_A 24 LSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEECPREGKSFK 73 (95)
T ss_dssp SSSSCCCCCCCCSSHHHHHHHHHH-TTTCCTTCSCCCCCCTTCSSTTCCCS
T ss_pred CCCcccccccccCCHHHHHHHHHH-hccCCCCCCccceeccCCCCCCcccC
Confidence 346799999999999999999765 465311000 0000189999999753
No 151
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=92.83 E-value=0.031 Score=40.53 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=11.7
Q ss_pred eeecc--ccccccCCHHHHHHHHH
Q 027011 5 SLKCG--DCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~--~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|. .||+.|......+.|..
T Consensus 36 ~~~C~~~~C~~~f~~~~~l~~H~~ 59 (119)
T 2jp9_A 36 PYQCDFKDCERRFSRSDQLKRHQR 59 (119)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHH
T ss_pred CccCCCCCCcCccCCHHHHHHHHH
Confidence 45555 45555555555555543
No 152
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=92.80 E-value=0.02 Score=49.29 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
++.++.|++|||+++.+++||...|. +++.|++-|++.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLEN 215 (216)
T ss_dssp ---------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhcC
Confidence 57899999999999999999999887 899999988753
No 153
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=92.62 E-value=0.081 Score=36.42 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=30.0
Q ss_pred CCCCCH---HHHHHHHhCCCCHHHHH--HHHHHcCCCCHHHHHHHHH
Q 027011 110 EPEVDK---ELLKELEAMGFPVARAT--RALHYSGNANVEAAVNWVV 151 (229)
Q Consensus 110 ~~~vd~---~~l~qL~eMGF~~~~a~--kAL~~Tgn~~~E~A~~WL~ 151 (229)
+++.|+ +.|.||++|||+.+-.- +.|..-++ |+.+|++=|-
T Consensus 3 p~~~D~rl~~al~qMl~MGF~negGWLt~LL~~k~g-DI~~aLD~lq 48 (52)
T 1q02_A 3 PPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNY-DIGAALDTIQ 48 (52)
T ss_dssp CTTSCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTT-CHHHHHHHHT
T ss_pred CCCcChHHHHHHHHHHHcCCCccccHHHHHHHHccC-CHHHHHHHhh
Confidence 445554 46889999999987763 66666544 8999998763
No 154
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=92.39 E-value=0.039 Score=43.78 Aligned_cols=22 Identities=18% Similarity=0.587 Sum_probs=11.7
Q ss_pred eeeccccccccCCHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|..||+.|......+.|..
T Consensus 105 ~~~C~~C~~~f~~~~~l~~H~~ 126 (190)
T 2i13_A 105 PYACPECGKSFSQLAHLRAHQR 126 (190)
T ss_dssp CEECTTTCCEESSHHHHHHHHH
T ss_pred CCcCCCCCCccCCHHHHHHHHH
Confidence 3555555555555555555543
No 155
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=92.20 E-value=0.08 Score=37.17 Aligned_cols=12 Identities=17% Similarity=0.659 Sum_probs=7.1
Q ss_pred hhccCCCCCCCC
Q 027011 41 LNLVCATCGKPC 52 (229)
Q Consensus 41 l~l~C~~Cg~~~ 52 (229)
.+|.|+.|++.+
T Consensus 74 ~~~~C~~C~~~f 85 (100)
T 2ebt_A 74 KPFQCGVCNRSF 85 (100)
T ss_dssp CSCBCSSSCCBC
T ss_pred CCeECCCCcCcc
Confidence 346666666643
No 156
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.20 E-value=0.092 Score=32.16 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=28.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|+.||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2ytp_A 9 GERHYECSECGKAFARKSTLIMHQR--IHTG-------EKPSGPS 44 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHT--TTSC-------CCCCSSC
T ss_pred CCCCeECCcCCcccCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence 3567999999999999999999964 4653 2467776
No 157
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.15 E-value=0.12 Score=31.70 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=28.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2em4_A 9 GQRPYECIECGKAFKTKSSLICHRRS--HTG-------EKPSGPS 44 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHHH--HSS-------SSCCCCC
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHh--cCC-------CCCCCCC
Confidence 35679999999999999999999654 542 2467775
No 158
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.13 E-value=0.17 Score=36.30 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhCCCC---HHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 113 VDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 113 vd~~~l~qL~eMGF~---~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
.-+..+++|.+| || +..++++|.++|| +++.|++=|++..++
T Consensus 17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence 356789999999 86 5888999999987 999999999875443
No 159
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=92.13 E-value=0.12 Score=32.11 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.6
Q ss_pred CcceeeccccccccCCHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHA 25 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha 25 (229)
..+.++|+.|||.|......+.|.
T Consensus 5 gekp~~C~~CgK~F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTTEECSCHHHHHHHH
T ss_pred CccCeECCCCCCccCCHhHccCcC
Confidence 357899999999999999999997
No 160
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.97 E-value=0.13 Score=31.51 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT 47 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~ 47 (229)
....++|..||+.|......+.|... |.. ..+|.|+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~ 45 (46)
T 2yto_A 9 GEKPYKCSDCGKAFTRKSGLHIHQQS--HTG-------ERHSGPSS 45 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHH--HTC-------CCBTTTBC
T ss_pred CCCCEECcccCCccCCHhHHHHHHHH--cCC-------CCCCCCCC
Confidence 35679999999999999999999754 642 24677763
No 161
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.84 E-value=0.14 Score=31.08 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=28.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2ytf_A 9 GEKPFECSECQKAFNTKSNLIVHQR--THTG-------EKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHH--TSCS-------SSSSCCC
T ss_pred CCCCcCCCCCCcccCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence 3567999999999999999999964 3653 2467775
No 162
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.75 E-value=0.098 Score=31.87 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=28.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (45)
T 2epu_A 9 GQKPFECTHCGKSFRAKGNLVTHQR--IHTG-------EKSGPSS 44 (45)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHT--TTSS-------CCCCCSC
T ss_pred CCcCccCCCCCCccCChHHHHHHHH--HhCC-------CCCCCCC
Confidence 3567999999999999999999964 4753 2467775
No 163
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=91.70 E-value=0.061 Score=39.41 Aligned_cols=45 Identities=27% Similarity=0.542 Sum_probs=31.7
Q ss_pred CCcceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011 1 MAGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (229)
Q Consensus 1 ~~~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~ 55 (229)
|....++|. .||+.|......+.|... | . ..++.|+.||+.+.+.
T Consensus 1 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h---~-----~~~~~C~~C~~~f~~~ 47 (124)
T 1ubd_C 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHT--H---G-----PRVHVCAECGKAFVES 47 (124)
T ss_dssp ----CEECCSTTCCCEESSHHHHHHHHGG--G---S-----CCCEECTTTCCEESSH
T ss_pred CCCCcccCCCCCCcCccCCHHHHHHHHHH--c---C-----CCCeECCCCCchhCCH
Confidence 345678998 899999999999999753 5 1 2468899998865443
No 164
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=91.70 E-value=0.07 Score=36.67 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=10.4
Q ss_pred eeeccc--cccccCCHHHHHHHH
Q 027011 5 SLKCGD--CGALLRSVQEAQEHA 25 (229)
Q Consensus 5 slkC~~--Cg~~L~~~~~aq~Ha 25 (229)
.++|.. ||+.|......+.|.
T Consensus 5 ~~~C~~~~C~~~f~~~~~l~~H~ 27 (89)
T 2wbs_A 5 THTCDYAGCGKTYTKSSHLKAHL 27 (89)
T ss_dssp CEECCSTTTCCEESSHHHHHHHH
T ss_pred CeeCCCCCCCCcCCCHHHHHHHH
Confidence 344544 555555555555544
No 165
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.66 E-value=0.13 Score=31.48 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=30.4
Q ss_pred Ccceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011 2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (229)
Q Consensus 2 ~~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C 48 (229)
....++|. .||+.|......+.|.. .|+. ..+|+|+.|
T Consensus 9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 48 (48)
T 2ent_A 9 GEKPFACTWPGCGWRFSRSDELSRHRR--SHSG-------VKPSGPSSG 48 (48)
T ss_dssp CCCCEECCSSSCCCEESSHHHHHHHHT--TSCC-------CCSCSSCCC
T ss_pred CCCCeECCCCCCCCccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 35679998 89999999999999964 3653 257899887
No 166
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=91.65 E-value=0.16 Score=27.17 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.8
Q ss_pred ceeeccccccccCCHHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
..++|..||+.|........|...
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHH
T ss_pred cCccCCCcChhhCCHHHHHHHHHH
Confidence 468999999999999999999653
No 167
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.60 E-value=0.16 Score=31.04 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=28.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2en9_A 9 GKKLFKCNECKKTFTQSSSLTVHQRI--HTG-------EKPSGPS 44 (46)
T ss_dssp SSCCCBCTTTCCBCSSHHHHHHHHHH--HTS-------SCCCSCC
T ss_pred CCCCEECCccCcccCCHHHHHHHHHH--cCC-------CCCCCCC
Confidence 35679999999999999999999764 542 2457775
No 168
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.50 E-value=0.13 Score=31.23 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=28.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2yrj_A 9 GEKPYRCGECGKAFAQKANLTQHQR--IHTG-------EKPSGPS 44 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHT--TTSS-------CCSSCSC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence 3567999999999999999999964 4652 2467776
No 169
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.49 E-value=0.1 Score=31.93 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=27.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2enh_A 9 GEKPYECDVCRKAFSHHASLTQHQR--VHSG-------EKPSGPS 44 (46)
T ss_dssp CSSSCBCTTTCCBCSSSHHHHHHGG--GSCC-------SCCCCCC
T ss_pred CCCCcCCCCcCchhCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence 3567999999999999999999964 3653 2467775
No 170
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.49 E-value=0.11 Score=31.59 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=28.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT 47 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~ 47 (229)
....++|+.||+.|......+.|.. .|.. ..+|.|+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~ 45 (46)
T 2eq3_A 9 GEKPYECNQCGKAFSVRSSLTTHQA--IHTG-------KKPSGPSS 45 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHT--TSCC-------CCCCCSCC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHH--HhCC-------CCCCCCCC
Confidence 3567999999999999999999964 4643 24677753
No 171
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=91.33 E-value=0.11 Score=39.73 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=34.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchh-hhhhhccCCCCCCCCCCc
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSK 55 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~-E~vl~l~C~~Cg~~~~~~ 55 (229)
..+++|..||+.|......+.|... -|..=.... .....+.|+.|++.+.+.
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~~-~H~~~~~~~~~~~~~~~C~~C~~~f~~~ 75 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEECPREGKSFKAK 75 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHHT-TTSCCTTCSSCCCCBTTCTTSSCCCSSH
T ss_pred hcccccccCCcccCCHHHHHHHHHh-hcCCCcccCCccccccCCCCcccccCCH
Confidence 4678999999999999999999875 454311100 001126888888865443
No 172
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.28 E-value=0.14 Score=29.96 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|+.||+.|........|..+ .|+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~ 34 (37)
T 2elm_A 6 SGHLYYCSQCHYSSITKNCLKRHVIQ-KHS 34 (37)
T ss_dssp SSCEEECSSSSCEEECHHHHHHHHHH-HTC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHH-Hcc
Confidence 35679999999999999999999444 354
No 173
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.17 E-value=0.19 Score=30.36 Aligned_cols=36 Identities=8% Similarity=0.152 Sum_probs=27.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |+. ..+|.|+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 42 (43)
T 2yrm_A 7 GNGAFFCNECDCRFSEEASLKRHTLQ--THS-------DKSGPSS 42 (43)
T ss_dssp SSCCBCCSSSCCCBSSHHHHHHHHHH--HTC-------TTCSSSC
T ss_pred CCCCEECCCCCCeeCChHHHHHHHHh--hCC-------CCCccCC
Confidence 34679999999999999999999754 542 2457775
No 174
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=91.07 E-value=0.37 Score=32.52 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (229)
Q Consensus 115 ~~~l~qL~eM--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD 156 (229)
++.+.+|.+| .-+...++.+|...+| +++.|++-|++-.++
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~G-d~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNN-DLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTT-CSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Confidence 5678999999 3346899999999988 999999999876443
No 175
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=90.98 E-value=0.12 Score=28.17 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.1
Q ss_pred eeeccccccccCCHHHHHHHHHHhCCC
Q 027011 5 SLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
.++|..||+.|........|..+ .|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~-~H~ 27 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIRHAQK-IHS 27 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHHHHTT-TSC
T ss_pred CcCCcccCcccCChHHHHHHHHH-Hcc
Confidence 57899999999999999999544 353
No 176
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=90.79 E-value=0.23 Score=31.12 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n 32 (229)
....|+|..||+.|......+.|..+ .|..
T Consensus 4 ~~kp~~C~~C~k~F~~~~~L~~H~~~-~H~~ 33 (48)
T 3iuf_A 4 RDKPYACDICGKRYKNRPGLSYHYAH-SHLA 33 (48)
T ss_dssp TTSCEECTTTCCEESSHHHHHHHHHH-SSCC
T ss_pred CCcCEECCCcCcccCCHHHHHHHhhh-hcCC
Confidence 45679999999999999999999875 4764
No 177
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.54 E-value=0.23 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 29 (35)
T 2elx_A 4 GSSGYVCALCLKKFVSSIRLRSHIRE 29 (35)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCeECCCCcchhCCHHHHHHHHHH
Confidence 35679999999999999999999764
No 178
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.42 E-value=0.24 Score=28.19 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 6 ~~~~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elr_A 6 SGKTHLCDMCGKKFKSKGTLKSHKLL 31 (36)
T ss_dssp CCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred CCCCeecCcCCCCcCchHHHHHHHHH
Confidence 35678999999999999999999754
No 179
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=90.36 E-value=0.17 Score=27.22 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=20.3
Q ss_pred ceeeccccccccCCHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
..++|..||+.|......+.|..
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCCEESCHHHHHHHHT
T ss_pred cCccCCCCCcccCCHHHHHHHHH
Confidence 46899999999999999999964
No 180
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=90.23 E-value=0.013 Score=41.17 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=32.7
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
...++|..||+.|........|... -| ..++.|+.|++.
T Consensus 29 ~~~~~C~~C~k~f~~~~~L~~H~~~-h~---------~~~~~c~~C~~~ 67 (88)
T 1llm_C 29 EKPFACDICGRKFARSDERKRHRDI-QH---------ILPILEDKVEEL 67 (88)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHH-HT---------HHHHHHHHHHHH
T ss_pred CCCccCCCCCCccCCHHHHHHHHHH-hC---------CCcchHHHHHHH
Confidence 4579999999999999999999876 33 257899999875
No 181
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=90.14 E-value=0.24 Score=26.50 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.4
Q ss_pred eeeccccccccCCHHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
.++|..||+.|........|...
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~ 24 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKRHYRS 24 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHHHHH
Confidence 57999999999999999999754
No 182
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=90.11 E-value=0.18 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.6
Q ss_pred eeccccccccCCHHHHHHHHH
Q 027011 6 LKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 6 lkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
++|..||+.|........|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 789999999999999988864
No 183
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=90.02 E-value=0.083 Score=41.83 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=16.4
Q ss_pred ceeeccccccccCCHHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
..++|..||+.|......+.|...
T Consensus 76 ~~~~C~~C~~~f~~~~~l~~H~~~ 99 (190)
T 2i13_A 76 KPYKCPECGKSFSQRANLRAHQRT 99 (190)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHH
T ss_pred CCccCcccCCccCCHHHHHHHHHh
Confidence 456777777777777777777654
No 184
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.02 E-value=0.33 Score=27.76 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 6 SGKPFKCSLCEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred CCCCccCCCCCchhCCHHHHHHHHHH
Confidence 35679999999999999999999653
No 185
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.02 E-value=0.26 Score=28.23 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=22.4
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSLQAHLRI 31 (36)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred CCCCEECCCCCceeCCHHHHHHHHHH
Confidence 35679999999999999999999754
No 186
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=89.89 E-value=0.17 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.0
Q ss_pred ceeeccccccccCCHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
..++|..||+.|......+.|..
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvg_A 2 APYRCPLCRAGCPSLASMQAHMR 24 (27)
T ss_dssp CTEEETTTTEEESCHHHHHHHHT
T ss_pred cCcCCCCCCcccCCHHHHHHHHH
Confidence 46899999999999999999863
No 187
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=89.87 E-value=0.083 Score=36.37 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=32.2
Q ss_pred cceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011 3 GVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (229)
Q Consensus 3 ~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~ 54 (229)
...++|. .|++.|......+.|... |.. ..++.|+.|++.+.+
T Consensus 2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~ 46 (90)
T 1a1h_A 2 ERPYACPVESCDRRFSQSGSLTRHIRI--HTG-------QKPFQCRICMRNFSR 46 (90)
T ss_dssp -CCEECCSSSCCCEESSHHHHHHHHHH--HHC-------CCCEECTTTCCEESC
T ss_pred CCceECCCCCCCCccCCHHHHHHHHHH--hCC-------CCCccCCCCCcccCC
Confidence 3578998 699999999999999764 421 245888888886433
No 188
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.81 E-value=0.014 Score=38.71 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=27.2
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccc
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~ 58 (229)
...++|..||+.|......+. ..++.|+.||+.+.+....
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~----------------~~~~~C~~C~~~f~~~~~l 55 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR----------------RKTPMCEKCRKDSCQEAAL 55 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC----------------SSSCCCHHHHHTCSCCCSS
T ss_pred CCCeeCCcccchhCCHHHhCc----------------CCCCCCCCCChhhcCHHHH
Confidence 467999999999765433222 3579999999875444333
No 189
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=89.65 E-value=0.23 Score=28.20 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.7
Q ss_pred CcceeeccccccccCCHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
....++|..||+.|........|..
T Consensus 4 ~~k~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 4 GKRPFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp CCSCEECSSSCCEESSHHHHHHHHG
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHH
Confidence 3567999999999999999999964
No 190
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=89.62 E-value=0.17 Score=27.20 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.6
Q ss_pred eeeccccccccCCHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|..||+.|........|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHT
T ss_pred CccCCCCCchhCCHHHHHHHHH
Confidence 5899999999999999999964
No 191
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=89.49 E-value=0.24 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.0
Q ss_pred CcceeeccccccccCCHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
....++|..||+.|........|..
T Consensus 8 ~~k~~~C~~C~k~f~~~~~l~~H~~ 32 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHLALHRK 32 (37)
T ss_dssp CSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred CCCCccCCCCCcccCcHHHHHHHHH
Confidence 3567899999999999999998854
No 192
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=89.49 E-value=0.15 Score=34.37 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=33.9
Q ss_pred cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|.. ||+.|......+.|... |.. ..+|.|+.||+.+
T Consensus 36 ~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~k~F 78 (79)
T 2dlk_A 36 QKSFSCPEPACGKSFNFKKHLKEHMKL--HSD-------TRDYICEFSGPSS 78 (79)
T ss_dssp CCCEECSCTTTCCEESSHHHHHHHHHH--HHT-------SCCCSCCSSSCCC
T ss_pred CCCeECCCCCCcCccCCHHHHHHHHHH--hCC-------CCCeeCCCCCCCC
Confidence 45799999 99999999999999864 532 3579999999864
No 193
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=89.29 E-value=0.1 Score=35.24 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=27.1
Q ss_pred eec--cccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC--CCCCCCC
Q 027011 6 LKC--GDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRS 54 (229)
Q Consensus 6 lkC--~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~--Cg~~~~~ 54 (229)
++| ..||+.+......+.|... |.. ..++.|+. |++.+.+
T Consensus 2 ~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~ 45 (85)
T 2j7j_A 2 YVCHFENCGKAFKKHNQLKVHQFS--HTQ-------QLPYECPHEGCDKRFSL 45 (85)
T ss_dssp EECCSTTCCCEESSHHHHHHHHHH--HHT-------TCCEECCSTTCCCEESS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHH--hCC-------CCCeeCCCCCCcCccCC
Confidence 678 7888888888888888643 421 24578876 8775433
No 194
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=89.14 E-value=0.31 Score=43.80 Aligned_cols=38 Identities=29% Similarity=0.587 Sum_probs=33.2
Q ss_pred CHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011 114 DKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (229)
Q Consensus 114 d~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (229)
+..+|.+|-+ -|.+--.|+|||..++| |++.|++||..
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LR~ 42 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 4567788875 48999999999999988 99999999987
No 195
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=89.11 E-value=0.25 Score=26.41 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.0
Q ss_pred eeeccccccccCCHHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
.++|..||+.|........|...
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~ 24 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTHIKT 24 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHHHHH
Confidence 57899999999999999999654
No 196
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=88.96 E-value=0.14 Score=34.58 Aligned_cols=38 Identities=16% Similarity=0.454 Sum_probs=31.7
Q ss_pred cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC---CCCCC
Q 027011 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT---CGKPC 52 (229)
Q Consensus 3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~---Cg~~~ 52 (229)
...++|.. |++.+......+.|... |.. +.|+. |++.+
T Consensus 29 ~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~----------~~C~~~~~C~~~f 71 (85)
T 2j7j_A 29 QLPYECPHEGCDKRFSLPSRLKRHEKV--HAG----------YPCKKDDSCSFVG 71 (85)
T ss_dssp TCCEECCSTTCCCEESSHHHHHHHHHH--HHS----------EECCSCSSCCCEE
T ss_pred CCCeeCCCCCCcCccCCHHHHHHHHHH--hCC----------CCCCCCCCCCCcc
Confidence 45789988 99999999999999854 544 89999 99863
No 197
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=88.89 E-value=0.54 Score=36.12 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHH-hCCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 027011 111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV 150 (229)
Q Consensus 111 ~~vd~~~l~qL~-eMGF~~~~a~kAL~~Tgn~~~E~A~~WL 150 (229)
..++++.++.++ .+|-|++.|++||..++| |+-.|+-+|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~g-Div~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGG-DLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 568999998877 589999999999999987 888888765
No 198
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=88.88 E-value=0.32 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceeeccccccccCCHHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
..++|..||+.|........|...
T Consensus 2 k~~~C~~C~~~f~~~~~l~~H~~~ 25 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSKMRHLET 25 (30)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHT
T ss_pred cCccCCCCCcccCCHHHHHHHHHH
Confidence 468999999999999999999653
No 199
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.68 E-value=0.34 Score=27.76 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|........|...
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~~ 31 (37)
T 2elo_A 6 SGRSYSCPVCEKSFSEDRLIKSHIKT 31 (37)
T ss_dssp CCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred CCCCcCCCCCCCccCCHHHHHHHHHH
Confidence 35679999999999999999999754
No 200
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=88.46 E-value=0.37 Score=25.60 Aligned_cols=23 Identities=26% Similarity=0.693 Sum_probs=20.1
Q ss_pred eeeccccccccCCHHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
.++|..||+.|......+.|...
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~ 24 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRI 24 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHHH
Confidence 58999999999999999998654
No 201
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=88.45 E-value=0.36 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.4
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|........|.. .|.
T Consensus 3 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 30 (39)
T 1njq_A 3 PPRSYTCSFCKREFRSAQALGGHMN--VHR 30 (39)
T ss_dssp CSSSEECTTTCCEESSHHHHHHHHH--TTC
T ss_pred CCCceECCCCCcccCCHHHHHHHHH--HcC
Confidence 4567999999999999999999964 364
No 202
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.04 E-value=0.35 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.1
Q ss_pred cceeeccccccccCCHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
...++|..||+.|........|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICERKFKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHT
T ss_pred CCCeECCCCCCccCCHHHHHHHHH
Confidence 467999999999999999999964
No 203
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=88.02 E-value=0.26 Score=32.82 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=32.8
Q ss_pred cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCCC
Q 027011 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPC 52 (229)
Q Consensus 3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~~ 52 (229)
...++|.. |++.|......+.|... |.. ..+|.|+ .|++.+
T Consensus 15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~~~C~k~f 59 (72)
T 2epa_A 15 IRSHICSHPGCGKTYFKSSHLKAHTRT--HTG-------EKPFSCSWKGCERRF 59 (72)
T ss_dssp CCCEECSSTTTCCEESSHHHHHHHHHH--HSS-------SCSEECCCTTCCCEE
T ss_pred cCceeCCCCCCccccCCHHHHHHHHHh--cCC-------CCCccCCCCCCCccc
Confidence 46789988 99999999999999865 532 2579995 599864
No 204
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=87.98 E-value=0.38 Score=41.18 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=25.8
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCC
Q 027011 113 VDKELLKELEAMGFPVARATRALHYSGN 140 (229)
Q Consensus 113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn 140 (229)
.+.+.|+.|++|||+++.++.||...|.
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~ 195 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGV 195 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 5788999999999999999999998876
No 205
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.96 E-value=0.45 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.6
Q ss_pred CcceeeccccccccCCHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
....++|..||+.|........|..
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elt_A 6 SGKPYKCPQCSYASAIKANLNVHLR 30 (36)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHH
Confidence 3467999999999999999999964
No 206
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=87.72 E-value=0.12 Score=39.11 Aligned_cols=50 Identities=18% Similarity=0.438 Sum_probs=33.9
Q ss_pred ceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC--CCCCCCCcccccccc
Q 027011 4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHR 62 (229)
Q Consensus 4 ~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~--Cg~~~~~~~E~~~a~ 62 (229)
..++|. .||+.|......+.|... |.. ..+|.|+. ||+.+.+......+.
T Consensus 66 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~~~~L~~H~ 119 (155)
T 2gli_A 66 KPHKCTFEGCRKSYSRLENLKTHLRS--HTG-------EKPYMCEHEGCSKAFSNASDRAKHQ 119 (155)
T ss_dssp CCCCCCSTTCCCCCSSHHHHHHHHHH--TTT-------CCCEECCSTTCCCEESSSSTTHHHH
T ss_pred CCccCCCCCCCCcccCHHHHHHHHHH--cCC-------CCCeeCCCCCCCCccCCHHHHHHHH
Confidence 457887 488888888888888765 432 24578876 887766655555454
No 207
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=87.51 E-value=0.5 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.475 Sum_probs=23.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|......+.|... |.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 34 (42)
T 2yte_A 7 GEKPYSCAECKETFSDNNRLVQHQKM--HT 34 (42)
T ss_dssp SCCSCBCTTTCCBCSSHHHHHHHHHH--TS
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHH--hC
Confidence 35679999999999999999999764 64
No 208
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.49 E-value=0.32 Score=36.48 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=33.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~ 52 (229)
...++|+.||+.|........|..+ .|+. ..+|.|..++.-.
T Consensus 48 ekpf~C~~Cgk~F~~~~~L~~H~~r-~Htg-------ekpy~C~~~~~~~ 89 (102)
T 2ghf_A 48 NSSYVCVECNFLTKRYDALSEHNLK-YHPG-------EENFKLTMVKRNN 89 (102)
T ss_dssp SCCEEETTTTEEESSTHHHHTHHHH-TSTT-------CCCEEEEECCCSS
T ss_pred CCCcCCCCCCcccCCHHHHHHHHHH-hcCC-------CCCeeCCcccCCC
Confidence 4579999999999999999999545 5753 2679999887653
No 209
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=87.40 E-value=0.39 Score=27.35 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.3
Q ss_pred eeeccccccccCCHHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
.++|..||+.|......+.|...
T Consensus 2 p~~C~~C~k~F~~~~~L~~H~~~ 24 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKHITL 24 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred cccCCCCCchhCCHHHHHHHHHH
Confidence 57899999999999999999753
No 210
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=87.37 E-value=0.51 Score=27.79 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|+.||+.|......+.|...
T Consensus 8 ~~~~~~C~~C~k~f~~~~~l~~H~~~ 33 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQRGSLAVHQRS 33 (42)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHHHHhhh
Confidence 35679999999999999999999754
No 211
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=87.23 E-value=0.11 Score=27.62 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=17.8
Q ss_pred eeeccccccccCCHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|..||+.|........|..
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~~ 23 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHIR 23 (26)
Confidence 5789999999888888887754
No 212
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=87.07 E-value=0.51 Score=28.45 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=28.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2eow_A 9 GEKPYKCNECGKAFRARSSLAIHQAT--HSG-------EKPSGPS 44 (46)
T ss_dssp CCCCEECTTSCCEESSHHHHHHHHHH--HCC-------CSCSCTT
T ss_pred CCCCeeccccCChhcCHHHHHHHHHH--cCC-------CCCCCCC
Confidence 35679999999999999999999754 642 2467775
No 213
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.85 E-value=0.42 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|........|...
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~ 34 (44)
T 2epv_A 9 GEKPYECNECGKAFIWKSLLIVHERT 34 (44)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred CCcCeECCCCCcccCchHHHHHHHhH
Confidence 35679999999999999999999653
No 214
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.83 E-value=0.43 Score=28.88 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=28.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2enf_A 9 GEKPYKCNECGKVFTQNSHLVRHRG--IHTG-------EKPSGPS 44 (46)
T ss_dssp CCCSCBCSSSCCBCSSHHHHHHHHT--TTTT-------SSCCCCS
T ss_pred CCcCeECCCCCcccCCHHHHHHHHH--hhCC-------CCCCCCC
Confidence 3567999999999999999999953 4642 2467775
No 215
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.79 E-value=0.42 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=28.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2emi_A 9 GERHYECSECGKAFIQKSTLSMHQR--IHRG-------EKPSGPS 44 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHG--GGCS-------CCCCSCC
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHh--HhCC-------CCCCCCC
Confidence 3567999999999999999999954 3642 2467775
No 216
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.75 E-value=0.44 Score=28.85 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=28.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~ 44 (46)
T 2emg_A 9 GENPFICSECGKVFTHKTNLIIHQK--IHTG-------ERPSGPS 44 (46)
T ss_dssp SCCSCBCTTTCCBCSSHHHHHHHHT--TTSC-------CCCSCSC
T ss_pred CCCCEECCccCcccCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence 3467999999999999999999964 4653 2467775
No 217
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=86.62 E-value=0.44 Score=28.19 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=23.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|......+.|... |.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 34 (42)
T 2el5_A 7 GENPYECSECGKAFNRKDQLISHQRT--HA 34 (42)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHGG--GC
T ss_pred CCCCccCCCcChhhCCHHHHHHHHHh--cC
Confidence 35679999999999999999999643 64
No 218
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.61 E-value=0.46 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.4
Q ss_pred CcceeeccccccccCCHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
....++|..||+.|......+.|..
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~ 32 (42)
T 2eos_A 8 GEKPYPCEICGTRFRHLQTLKSHLR 32 (42)
T ss_dssp SSCCBCCSSSCCCBSSHHHHHHHTT
T ss_pred CCCCEECCCCCCccCCHHHHHHHHH
Confidence 3467899999999999999999954
No 219
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=86.61 E-value=0.55 Score=28.47 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=28.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2emj_A 9 GEKPFECAECGKSFSISSQLATHQRI--HTG-------EKPSGPS 44 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHHH--HTT-------SCSSSSC
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 35679999999999999999999754 642 2467775
No 220
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.60 E-value=0.55 Score=28.40 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=28.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|........|... |.. ..+|+|+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~~~~~C~ 44 (46)
T 2em3_A 9 GEKPYECKVCSKAFTQKAHLAQHQKT--HTG-------EKPSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHH--HCC-------CCCCCSC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 35679999999999999999999854 642 2467775
No 221
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=86.58 E-value=0.41 Score=25.32 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=18.9
Q ss_pred eeeccccccccCCHHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
.++|..||+.|........|...
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~ 24 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAHLKI 24 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHHHHH
Confidence 57899999999988888888643
No 222
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.54 E-value=0.44 Score=28.86 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=28.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|+|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2eq1_A 9 GEKPYKCNECGKAFRAHSNLTTHQV--IHTG-------EKPSGPS 44 (46)
T ss_dssp CSCCCCCTTTTCCCSSHHHHHHHHT--TTCC-------SCCSSCC
T ss_pred CCCCeECCcCChhhCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence 4567999999999999999999964 4653 2467775
No 223
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.48 E-value=0.47 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=23.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|+.||+.|......+.|.. .|+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 34 (41)
T 2ept_A 7 GQRVYECQECGKSFRQKGSLTLHER--IHT 34 (41)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHGG--GCC
T ss_pred CCCCeECCCCCCCcCCHHHHHHHHH--HhC
Confidence 3567999999999999999999964 364
No 224
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.47 E-value=0.51 Score=27.09 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.0
Q ss_pred CcceeeccccccccCCH-HHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSV-QEAQEHAE 26 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~-~~aq~Ha~ 26 (229)
....++|..||+.|... .....|..
T Consensus 6 ~~k~~~C~~C~k~f~~~~~~L~~H~~ 31 (37)
T 2elp_A 6 SGRAMKCPYCDFYFMKNGSDLQRHIW 31 (37)
T ss_dssp CCCCEECSSSSCEECSSCHHHHHHHH
T ss_pred CCCCeECCCCChhhccCHHHHHHHHH
Confidence 34679999999999998 88888864
No 225
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.46 E-value=0.46 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 33 (42)
T 2en2_A 8 GEKPYKCETCGARFVQVAHLRAHVLI 33 (42)
T ss_dssp SSCSEECTTTCCEESSHHHHHHHTHH
T ss_pred CCCCEeCCCcChhhCCHHHHHHHHHH
Confidence 35679999999999999999999653
No 226
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.39 E-value=0.47 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=28.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2eon_A 9 GEKPYKCQVCGKAFRVSSHLVQHHS--VHSG-------ERPSGPS 44 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHTT--TTTS-------CCSCTTS
T ss_pred CCcccCCCCCCcccCcHHHHHHHHH--hcCC-------CCCCCCC
Confidence 3567999999999999999999964 4653 2467776
No 227
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.25 E-value=0.44 Score=28.41 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.5
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|......+.|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (44)
T 2en7_A 9 GMKPYVCNECGKAFRSKSYLIIHTR--THT 36 (44)
T ss_dssp SSSSSCCTTTCCCCSSHHHHHHHHT--TTC
T ss_pred CCcCeECCCCCCccCCHHHHHHHhh--hcC
Confidence 3567999999999999999999974 464
No 228
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.21 E-value=0.58 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=28.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~kp~~C~ 44 (46)
T 2eor_A 9 GEKPYNCEECGKAFIHDSQLQEHQRI--HTG-------EKPSGPS 44 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHH--HHS-------CCCSSST
T ss_pred CCcCccCCCCCCCcCCHHHHHHHHHh--cCC-------CCCCCCC
Confidence 35679999999999999999999654 532 2467775
No 229
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=85.99 E-value=0.59 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.2
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
...++|..||+.|......+.|..+ .|.
T Consensus 28 ~~~~~C~~C~~~f~~~~~l~~H~~~-~H~ 55 (60)
T 2adr_A 28 EKPYPCGLCNRAFTRRDLLIRHAQK-IHS 55 (60)
T ss_dssp SCSEECTTTCCEESSHHHHHHHHTT-TSC
T ss_pred CCCccCCCCCCccCCHHHHHHHHHH-HcC
Confidence 4579999999999999999999866 564
No 230
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.96 E-value=0.44 Score=28.47 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=27.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~ 44 (44)
T 2eoj_A 9 GENPYECCECGKVFSRKDQLVSHQK--THSG-------QSGPSSG 44 (44)
T ss_dssp SCCSCEETTTTEECSSHHHHHHHHT--TSSS-------SCSCCCC
T ss_pred CCcCeeCCCCCCccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence 3567999999999999999999954 4653 2456664
No 231
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.96 E-value=0.52 Score=28.58 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|+|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2em6_A 9 GEKCYKCDVCGKEFSQSSHLQTHQR--VHTG-------EKPSGPS 44 (46)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHT--TTSS-------SCCCCTT
T ss_pred CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence 3567999999999999999999953 4653 2467775
No 232
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=85.93 E-value=0.37 Score=38.52 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=25.9
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhh---------hccCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVL---------NLVCATCGKP 51 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl---------~l~C~~Cg~~ 51 (229)
.-.++|.+||..+.... -++.+.+....-. .++||.||++
T Consensus 68 p~~~~C~~CG~~~~~~~---------~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKE---------VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CCEEEETTTCCEEEGGG---------CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CCcEECCCCCCEEeccc---------ccccccccccccccccccccccCCcCccccCC
Confidence 45789999999876522 2234444433221 6899999997
No 233
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.84 E-value=0.47 Score=28.62 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=28.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|+.||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2ep1_A 9 GEKPYECSDCGKSFIKKSQLHVHQRI--HTG-------ENPSGPS 44 (46)
T ss_dssp SCCSSCCSSSCCCCSSHHHHHHHHGG--GSS-------SCCCSSS
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 35679999999999999999999643 653 2467776
No 234
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.82 E-value=0.64 Score=28.18 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=28.2
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2eoh_A 9 GKKPYECKECRKTFIQIGHLNQHKRV--HTG-------ERSSGPS 44 (46)
T ss_dssp CSCSCCCSSSCCCCSSHHHHHHHHHH--CSS-------CCSCSTT
T ss_pred CCCCcCCCCcCchhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 34679999999999999999999754 642 2467776
No 235
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.75 E-value=0.46 Score=28.75 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=28.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2eq2_A 9 GGKPYQCNECGKAFSQTSKLARHQR--VHTG-------EKPSGPS 44 (46)
T ss_dssp SSCSSSCCSSCCCCSSHHHHHHHGG--GGCC-------CCCCCCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence 3567999999999999999999964 3653 2467775
No 236
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.72 E-value=0.66 Score=27.57 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=23.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|........|... |+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (44)
T 2eof_A 9 GEKPYECNECQKAFNTKSNLMVHQRT--HT 36 (44)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHH--TT
T ss_pred CCCCeECCCCCcccCCHhHHHHHHHH--hC
Confidence 34679999999999999999999754 64
No 237
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.72 E-value=0.52 Score=28.41 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=28.0
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|........|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~p~~C~ 44 (46)
T 2yts_A 9 GEKPYICNECGKSFIQKSHLNRHRR--IHTG-------EKPSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHGG--GTSS-------CCSSCCC
T ss_pred CCcCEECCCCChhhCChHHHHHHHH--hcCC-------CCCcCCC
Confidence 3567999999999999999999964 4642 2467775
No 238
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=85.61 E-value=0.57 Score=33.92 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=26.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n 32 (229)
....|+|..||+.|........|..+ -|+.
T Consensus 53 ~~k~~~C~~C~k~F~~~~~L~~H~~~-~H~~ 82 (85)
T 2lv2_A 53 AAQVFPCKYCPATFYSSPGLTRHINK-CHPS 82 (85)
T ss_dssp CSSSEECTTSSCEESSHHHHHHHHHT-TCTT
T ss_pred CCCccCCCCCCCEeCCHHHHHHhCcc-cCcC
Confidence 35679999999999999999999887 6763
No 239
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=85.70 E-value=0.16 Score=27.47 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.1
Q ss_pred ceeeccccccccCCHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
..++|..||+.|......+.|..
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~ 24 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQRHVR 24 (30)
Confidence 35789999999998888888864
No 240
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.42 E-value=0.55 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=23.4
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|......+.|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (44)
T 2emb_A 9 TRKRYECSKCQATFNLRKHLIQHQK--THA 36 (44)
T ss_dssp CCSSEECTTTCCEESCHHHHHHHGG--GGC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHH--HcC
Confidence 3567999999999999999999974 364
No 241
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=85.61 E-value=0.16 Score=27.49 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=18.3
Q ss_pred eeeccccccccCCHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|..||+.|........|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVR 23 (29)
Confidence 5789999999988888888864
No 242
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.37 E-value=0.57 Score=28.03 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=23.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
....++|..||+.|........|... |.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (44)
T 2yu5_A 9 GENPFKCSKCDRVFTQRNYLVQHERT--HA 36 (44)
T ss_dssp CCCSEECSSSSCEESSSHHHHHHHHH--CC
T ss_pred CCCCeECCCCCchhCCHHHHHHHhHh--cC
Confidence 35679999999999999999999764 64
No 243
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.27 E-value=0.47 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=27.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2yti_A 9 GEKPYKCNECGKVFTQNSHLARHRG--IHTG-------EKPSGPS 44 (46)
T ss_dssp CCCTTCCSSSCCCCSSHHHHHHHHT--TTSC-------SCCSSTT
T ss_pred CCcCeECCCCCcccCChhHHHHHhH--hcCC-------CCCCCCC
Confidence 3567899999999999999999953 4652 2467775
No 244
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.25 E-value=0.7 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=27.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
...++|..|++.|......+.|... |.. ..+|.|+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2eom_A 10 ERGHRCSDCGKFFLQASNFIQHRRI--HTG-------EKPSGPS 44 (46)
T ss_dssp CSSCCCSSSCCCCSSHHHHHHHHHH--HSS-------CCCSSCC
T ss_pred CCCcCCCCCCCeeCChHHHHHHHHH--hCC-------CCCCCCC
Confidence 4679999999999999999999654 642 2467775
No 245
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.15 E-value=0.72 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=22.1
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..||+.|......+.|...
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2eou_A 10 KTTSECQECGKIFRHSSLLIEHQAL 34 (44)
T ss_dssp SCCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHHHHHH
Confidence 4678999999999999999999754
No 246
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.13 E-value=0.63 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=28.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~ 44 (46)
T 2eoz_A 9 GEKPYSCNVCGKAFVLSAHLNQHLRV--HTQ-------ETLSGPS 44 (46)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHHH--HSS-------CCSSSCC
T ss_pred CCCCeECcccChhhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 35679999999999999999999654 542 2457776
No 247
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.85 E-value=0.61 Score=28.28 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=27.6
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|........|.. .|.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~ 44 (46)
T 2yth_A 9 GEKPFQCEECGKRFTQNSHLHSHQR--VHTG-------EKPSGPS 44 (46)
T ss_dssp CSSSBCCSSSCCCBSSHHHHHHHGG--GGTT-------CCCSSCC
T ss_pred CCcCCCCCCCCcccCCHHHHHHHHH--hcCC-------CCCCCCC
Confidence 3567999999999999999999954 3642 2467775
No 248
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=84.78 E-value=1.1 Score=30.31 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=31.7
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
..++|..|++.|........|... |.. ..++.|+.||..
T Consensus 46 ~~~~C~~C~~~f~~~~~L~~H~~~--h~~-------~~~~~~~~~~~~ 84 (86)
T 1x6h_A 46 AAFVCSKCGKTFTRRNTMARHADN--CAG-------PDGVEGENSGPS 84 (86)
T ss_dssp CCEECSSSCCEESCHHHHHHHHHH--CCC-------CCSCCCCCCCCC
T ss_pred cceECCCCCChhCCHHHHHHHHHH--ccC-------CCCcccCCCCCC
Confidence 579999999999999999999876 332 245789999874
No 249
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.55 E-value=0.77 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
...++|..|++.|......+.|... |+. ..+|.|+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 44 (46)
T 2emz_A 10 ERPFKCNECGKGFGRRSHLAGHLRL--HSR-------EKSSGPS 44 (46)
T ss_dssp CCSCCCSSSCCCCSSHHHHHHHHHH--HHH-------TTCCCSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 4679999999999999999999754 431 2567776
No 250
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=84.52 E-value=0.34 Score=34.81 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=33.0
Q ss_pred Ccceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCCCCC
Q 027011 2 AGVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPCRS 54 (229)
Q Consensus 2 ~~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~~~~ 54 (229)
....++|.. ||+.|......+.|... |.. ..++.|+ .||+.+.+
T Consensus 3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~ 50 (119)
T 2jp9_A 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTG-------EKPYQCDFKDCERRFSR 50 (119)
T ss_dssp SSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHT-------TCCEECCSTTCCCEESS
T ss_pred CCeeeeCCCCCCcchhCCHHHHHHHHHh--hCC-------CCCccCCCCCCcCccCC
Confidence 356799996 99999999999999875 432 2457887 68876433
No 251
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=84.43 E-value=0.49 Score=37.25 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=9.6
Q ss_pred hhccCCC--CCCCCCCccc
Q 027011 41 LNLVCAT--CGKPCRSKTE 57 (229)
Q Consensus 41 l~l~C~~--Cg~~~~~~~E 57 (229)
.+|.|+. ||+.+.+...
T Consensus 133 ~~~~C~~~~C~k~F~~~~~ 151 (190)
T 1tf6_A 133 LPYECPHEGCDKRFSLPSR 151 (190)
T ss_dssp CSSBCCSSSCCCBCSSHHH
T ss_pred CCccCCCCCCCchhcCHHH
Confidence 4567766 7766544333
No 252
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.09 E-value=0.58 Score=28.38 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=27.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|......+.|.. .|+.- ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~~------~~~~~C~ 45 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFSCSKYLTQHER--IHTRG------VKSGPSS 45 (46)
T ss_dssp CSCCEECSSSCCEESSSHHHHHHHT--TCCSC------CTTSSSC
T ss_pred CCCCEECcCCCCcCCCHHHHHHHHH--HcCCC------CCCCCCC
Confidence 3467999999999999999999963 46421 1457775
No 253
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=83.80 E-value=1 Score=38.47 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=31.8
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
..+|..|-+ -|-+--.|++||..++| |++.|++||...
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~G-D~ekAie~LR~k 42 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHc
Confidence 346777765 48999999999999988 999999999753
No 254
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=83.79 E-value=0.77 Score=33.19 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=32.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
....++|..||+.|......+.|... |+. ..+|+|..|...
T Consensus 22 ~~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~-------ekp~~C~~~~~~ 62 (88)
T 1x6f_A 22 QNSTYQCKHCDSKLQSTAELTSHLNI--HNE-------EFQKRAKRQERR 62 (88)
T ss_dssp CCSCEECSSSCCEESSHHHHHHHHHH--HHH-------HHHHHCCCCSCC
T ss_pred CCCCCcCCCCCCEeCCHHHHHHHHHH--hCC-------CCCcccchhhhH
Confidence 34679999999999999999999754 532 367999988764
No 255
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=83.65 E-value=0.7 Score=29.24 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.1
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 21 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 46 (54)
T 1yui_A 21 SEQPATCPICYAVIRQSRNLRRHLEL 46 (54)
T ss_dssp SSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred CCCCccCCCCCcccCCHHHHHHHHHH
Confidence 34678999999999999999999754
No 256
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=83.62 E-value=0.31 Score=37.64 Aligned_cols=28 Identities=32% Similarity=0.823 Sum_probs=21.5
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhc-cCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNL-VCATCGKP 51 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l-~C~~Cg~~ 51 (229)
...++|.+||..+.... ... +||.||.+
T Consensus 71 p~~~~C~~CG~~~e~~~---------------------~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNA---------------------LDYGVCEKCHSK 99 (119)
T ss_dssp CCEEECSSSSCEECSCC---------------------STTCCCSSSSSC
T ss_pred cceEEcCCCCCEEeCCC---------------------CCCCcCccccCC
Confidence 45789999999876521 257 89999986
No 257
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.43 E-value=0.46 Score=27.99 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=20.8
Q ss_pred CcceeeccccccccCCHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
....++|..||+.|........|..
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~ 32 (42)
T 2ytb_A 8 GEKPYRCDQCGKAFSQKGSLIVHIR 32 (42)
T ss_dssp SCCSBCCTTTTCCBSSHHHHHTTGG
T ss_pred CCCCeeCCCccchhCCHHHHHHHHH
Confidence 3467899999999999999888864
No 258
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.40 E-value=0.8 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=27.7
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
....++|..||+.|........|... |.. ..+|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~~~~~C~ 44 (46)
T 2en3_A 9 GEKPFQCKECGMNFSWSCSLFKHLRS--HER-------TDPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHH--HHH-------SCCSSCS
T ss_pred CCCCeeCcccChhhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence 35679999999999999999999754 421 2567776
No 259
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=83.33 E-value=1.6 Score=30.42 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHc----CCCCHHHHH
Q 027011 114 DKELLKELEAMGFPVARATRALHYS----GNANVEAAV 147 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~~T----gn~~~E~A~ 147 (229)
.+++++.|+.+||++..|.+|+..- .+.+++..+
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lI 54 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 54 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4679999999999999999998764 134566543
No 260
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=82.84 E-value=0.57 Score=36.85 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=11.3
Q ss_pred eeec--cccccccCCHHHHHHHH
Q 027011 5 SLKC--GDCGALLRSVQEAQEHA 25 (229)
Q Consensus 5 slkC--~~Cg~~L~~~~~aq~Ha 25 (229)
.++| ..||+.|......+.|.
T Consensus 42 ~~~C~~~~C~~~f~~~~~l~~H~ 64 (190)
T 1tf6_A 42 PFPCKEEGCEKGFTSLHHLTRHS 64 (190)
T ss_dssp SSCCSSTTCCCCCSSHHHHHHHH
T ss_pred CccCCCCCCChhhCCHHHHHHHH
Confidence 3455 45555555555555554
No 261
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=82.47 E-value=0.92 Score=32.91 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=11.3
Q ss_pred eeeccccccccCCHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHA 25 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha 25 (229)
.++|..||+.|......+.|.
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~ 54 (124)
T 1ubd_C 34 VHVCAECGKAFVESSKLKRHQ 54 (124)
T ss_dssp CEECTTTCCEESSHHHHHHHG
T ss_pred CeECCCCCchhCCHHHHHHHH
Confidence 345555555555555555553
No 262
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=82.18 E-value=0.46 Score=31.66 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=24.8
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
..++|..||.+.....+-- +-|++- -.+.+||.||.+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~--------t~f~~l---P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDN--------VPFDQL---PDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTT--------CCGGGS---CTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCC--------cchhhC---CCCCcCcCCCCc
Confidence 4689999999976432111 556654 234799999974
No 263
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=81.89 E-value=0.56 Score=31.79 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.3
Q ss_pred CcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n 32 (229)
....++|.+||+.|........|. + .|++
T Consensus 29 ~ekp~~C~~C~k~F~~~~~L~~H~-~-~Htg 57 (60)
T 4gzn_C 29 GYRPRSCPECGKCFRDQSEVNRHL-K-VHQN 57 (60)
T ss_dssp TCCCEECTTTCCEESSHHHHHHHG-G-GGSC
T ss_pred CCcCeECCCCCCCcCCHHHHHHHh-C-ccCC
Confidence 456899999999999999999995 3 3763
No 264
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.53 E-value=1.3 Score=29.73 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=25.9
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNF 33 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nF 33 (229)
...++|..||+.|......+.|..+ -|..-
T Consensus 36 ~~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~ 65 (78)
T 2d9h_A 36 ALRFPCEFCGKRFEKPDSVAAHRSK-SHPAL 65 (78)
T ss_dssp TCCEECTTTCCEESSHHHHHHHHHH-TSTTT
T ss_pred CcccCCCCCCchhCCHHHHHHHHHH-hCCCC
Confidence 4679999999999999999999877 67653
No 265
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=81.53 E-value=1.9 Score=32.94 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=40.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHH----cCC--CCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 027011 117 LLKELEAMGFPVARATRALHY----SGN--ANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQ 188 (229)
Q Consensus 117 ~l~qL~eMGF~~~~a~kAL~~----Tgn--~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~~~~~LTeEEkkaK~~ 188 (229)
.+.+.++|||+....++++.. +|. .+++.-+.=|+...++. ..+.. +..+ ...++++||.-.+|+
T Consensus 30 vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~~--~~~~~-~~~s----~~~~~s~eEqLrrLq 100 (104)
T 2kna_A 30 MVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDS--MQDES-SQTS----LQKEISTEEQLRRLQ 100 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSC--CCCCS-SCCC----CCCCCCHHHHGGGTC
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhh--ccccc-cccc----ccCCCCHHHHHHHHH
Confidence 577889999999999887766 443 56888787777654432 11111 1111 245788877644443
No 266
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.42 E-value=0.57 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.565 Sum_probs=22.4
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~ 34 (44)
T 2eox_A 9 DSKSYNCNECGKAFTRIFHLTRHQKI 34 (44)
T ss_dssp CCCCEEETTTTEEESSSHHHHTTHHH
T ss_pred CCCCeECcccCcccCCHHHHHHHHHH
Confidence 35679999999999999999999764
No 267
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=80.83 E-value=0.89 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=19.6
Q ss_pred eeecc--ccccccCCHHHHHHHHH
Q 027011 5 SLKCG--DCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~--~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|. .||+.|......+.|..
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKK 25 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHH
Confidence 58999 99999999999999964
No 268
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.74 E-value=1.3 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=28.8
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
...++|..|++.+. ....+.|...+| ..++.|+.||+.
T Consensus 15 ~r~~~C~~C~~~~~-~~~L~~H~~~c~----------~~~~~C~~C~~~ 52 (75)
T 2d9k_A 15 LRLAVCQHCDLELS-ILKLKEHEDYCG----------ARTELCGNCGRN 52 (75)
T ss_dssp CCCEECSSSCCEEC-HHHHHHHHHHHH----------HCEEECSSSCCE
T ss_pred CcccCCcccChHhh-HHHHHHHHhHcC----------CCceEcccCCCc
Confidence 45789999999996 777777863322 356899999985
No 269
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=79.35 E-value=0.32 Score=36.68 Aligned_cols=43 Identities=28% Similarity=0.498 Sum_probs=27.3
Q ss_pred eeccccccccCCHHHHHHHHHHhCCCCCCchh-------hh--hhhccCCCCCCC
Q 027011 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSEST-------EA--VLNLVCATCGKP 51 (229)
Q Consensus 6 lkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~-------E~--vl~l~C~~Cg~~ 51 (229)
-||..||+.|.-.+-..+... -.||+|.- .+ .--++||.||.-
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~---~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE 60 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLI---IENFEEIVKDRERFLAQVEEFVFKCPVCGEE 60 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTT---CSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred ccCCcCCCccCHHHHHHHHHh---hccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence 589999999876655444332 24666630 11 123899999985
No 270
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=79.33 E-value=1.2 Score=33.76 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=11.7
Q ss_pred eeccccccccCCHHHHHHHHH
Q 027011 6 LKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 6 lkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
++|..|++.|......+.|..
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~ 83 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIR 83 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTH
T ss_pred cCCCCcccccCCHHHHHHHHH
Confidence 455555555555555555544
No 271
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=79.26 E-value=0.59 Score=31.82 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=33.1
Q ss_pred cceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011 3 GVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (229)
Q Consensus 3 ~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~ 53 (229)
...++|. .||+.+......+.|... |.. ..+|.|+.||+.+.
T Consensus 33 ~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 33 EKPYHCDWDGCGWKFARSDELTRHYRK--HTG-------HRPFQCQKCDRAFS 76 (89)
T ss_dssp SCCEECCSTTTCCEESSHHHHHHHHHH--HHC-------CCCEECSSSSCEES
T ss_pred CCCcCCCCCCCCCccCCHHHHHHHHHH--cCC-------CCCccCCCCCcccC
Confidence 4578996 799999999999999754 432 25699999999643
No 272
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=78.83 E-value=1.6 Score=28.14 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.8
Q ss_pred CcceeeccccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|..||+.|......+.|...
T Consensus 37 ~~~~~~C~~C~k~f~~~~~L~~H~~~ 62 (66)
T 2drp_A 37 NVKVYPCPFCFKEFTRKDNMTAHVKI 62 (66)
T ss_dssp SCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHH
Confidence 34679999999999999999999765
No 273
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=78.65 E-value=1.3 Score=24.12 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.4
Q ss_pred eeecc--ccccccCCHHHHHHHHH
Q 027011 5 SLKCG--DCGALLRSVQEAQEHAE 26 (229)
Q Consensus 5 slkC~--~Cg~~L~~~~~aq~Ha~ 26 (229)
.++|. .||+.|......+.|..
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~H~~ 25 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQRHKR 25 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred CcCCcCCCCCcccCCHhHHHHHHH
Confidence 57898 99999999999999964
No 274
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.71 E-value=1.8 Score=28.97 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=24.3
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n 32 (229)
..++|..|++.|......+.|... -|..
T Consensus 44 ~~~~C~~C~~~f~~~~~L~~H~~~-~H~~ 71 (77)
T 2ct1_A 44 AKFHCPHCDTVIARKSDLGVHLRK-QHSY 71 (77)
T ss_dssp SSEECSSSSCEESSHHHHHHHHHH-TSCC
T ss_pred CccCCCCCCCccCCHHHHHHHHHH-hCCC
Confidence 579999999999999999999876 5643
No 275
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=77.06 E-value=1.9 Score=28.65 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=22.1
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..||+.|......+.|...
T Consensus 43 ~~~~~C~~C~k~f~~~~~L~~H~~~ 67 (74)
T 2lce_A 43 EKPYRCNICGAQFNRPANLKTHTRI 67 (74)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred CCCEECCCCCchhCCHHHHHHHHHh
Confidence 4579999999999999999999754
No 276
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=76.78 E-value=1.6 Score=32.70 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=23.5
Q ss_pred cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCCCCCcccccccc
Q 027011 11 CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPCRSKTETDLHR 62 (229)
Q Consensus 11 Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~~~~~~E~~~a~ 62 (229)
|++.|......+.|... |.. ..++.|+ .|++.+.+......+.
T Consensus 45 c~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~~~~l~~H~ 89 (155)
T 2gli_A 45 ELRPFKAQYMLVVHMRR--HTG-------EKPHKCTFEGCRKSYSRLENLKTHL 89 (155)
T ss_dssp TTCCCSSHHHHHHHTHH--HHC-------CCCCCCCSTTCCCCCSSHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHh--cCC-------CCCccCCCCCCCCcccCHHHHHHHH
Confidence 34667777777777544 221 2356776 3777665544443333
No 277
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=76.78 E-value=1.9 Score=29.95 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=24.1
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n 32 (229)
.+.|+|..|+|.|........|... |+.
T Consensus 11 ekpy~C~~CgK~F~~~s~L~~H~r~--Htg 38 (66)
T 2epp_A 11 AGILPCGLCGKVFTDANRLRQHEAQ--HGV 38 (66)
T ss_dssp CCCCCCTTTCCCCSCHHHHHHHHHH--HTT
T ss_pred ccCcCCCCCCCccCCHHHHHhhhhh--hCC
Confidence 4679999999999999999999765 654
No 278
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=76.11 E-value=2.4 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.0
Q ss_pred Ccceeecc--ccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCG--DCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~--~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|+ .||+.|......+.|...
T Consensus 3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~ 30 (38)
T 1bhi_A 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK 30 (38)
T ss_dssp TCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred CCcceECCCCCCCcccCCHHHHHHHHHH
Confidence 45679999 699999999999999754
No 279
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=75.53 E-value=1.7 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.1
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..||+.|........|...
T Consensus 30 ~~~~~C~~C~~~f~~~~~l~~H~~~ 54 (57)
T 3uk3_C 30 EKPYKCEFCEYAAAQKTSLRYHLER 54 (57)
T ss_dssp CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred CCCcCCCCCcchhCCHHHHHHHHHH
Confidence 4579999999999999999999765
No 280
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=75.35 E-value=2.3 Score=26.47 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=22.0
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..||+.|........|...
T Consensus 27 ~~~~~C~~C~~~f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 27 VRPYHCTYCNFSFKTKGNLTKHMKS 51 (57)
T ss_dssp CCCEECSSSSCEESSHHHHHHHHHS
T ss_pred CCCccCCCCCchhcCHHHHHHHHHH
Confidence 4579999999999999999999754
No 281
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.80 E-value=2.3 Score=27.83 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.2
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..|++.|......+.|...
T Consensus 35 ~~~~~C~~C~~~f~~~~~L~~H~~~ 59 (70)
T 1x5w_A 35 DRPFKCNYCSFDTKQPSNLSKHMKK 59 (70)
T ss_dssp SCSEECSSSSCEESSHHHHHHHHHH
T ss_pred CCCEeCCCCCCccCCHHHHHHHHHH
Confidence 4569999999999999999999765
No 282
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=74.36 E-value=1.7 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=19.6
Q ss_pred ceeecc--ccccccCCHHHHHHHHH
Q 027011 4 VSLKCG--DCGALLRSVQEAQEHAE 26 (229)
Q Consensus 4 ~slkC~--~Cg~~L~~~~~aq~Ha~ 26 (229)
..++|. .||+.|......+.|..
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~ 26 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHH
Confidence 468899 89999999999999964
No 283
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=73.76 E-value=3.1 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.7
Q ss_pred Ccceeecc--ccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCG--DCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~--~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|. .||+.|......+.|...
T Consensus 5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~ 32 (37)
T 1va1_A 5 KKKQHICHIQGCGKVYGKTSHLRAHLRW 32 (37)
T ss_dssp SCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 35679999 599999999999999653
No 284
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.69 E-value=1.5 Score=31.42 Aligned_cols=37 Identities=27% Similarity=0.587 Sum_probs=24.1
Q ss_pred cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccccccccccc
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTG 66 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~ 66 (229)
...|+|.+||..+.-. ..+ ...|+.||.. .+..||+.
T Consensus 26 ~v~Y~C~~CG~~~e~~-----------------~~d---~irCp~CG~R-------ILyK~R~~ 62 (70)
T 1twf_L 26 TLKYICAECSSKLSLS-----------------RTD---AVRCKDCGHR-------ILLKARTK 62 (70)
T ss_dssp CCCEECSSSCCEECCC-----------------TTS---TTCCSSSCCC-------CCBCCCCS
T ss_pred eEEEECCCCCCcceeC-----------------CCC---CccCCCCCce-------EeEecCCC
Confidence 4568999999885421 001 2489999985 56666653
No 285
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.65 E-value=3.3 Score=29.58 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=32.4
Q ss_pred eecccccccc--CCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccccccccc
Q 027011 6 LKCGDCGALL--RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKR 64 (229)
Q Consensus 6 lkC~~Cg~~L--~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~~~a~K~ 64 (229)
++|..|++.+ ......+.|.. .|.. ..+|.|+.||+.+........+.++
T Consensus 51 ~~C~~C~~~f~f~~~~~l~~H~~--~H~~-------~~~~~C~~C~k~f~~~~~L~~H~~~ 102 (115)
T 2dmi_A 51 ETDNNNPKRWSKPRKRSLLEMEG--KEDA-------QKVLKCMYCGHSFESLQDLSVHMIK 102 (115)
T ss_dssp CCCCCCCSCCSSCCCCCCCCCCC--SCCC-------CSSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred ccCCCCCcccccccHHHHHHHhh--ccCC-------CcceECCCCCCccCCHHHHHHHHHH
Confidence 4588888877 66666666643 3553 2468888888877766555555444
No 286
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.22 E-value=2.6 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.1
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..|++.|......+.|...
T Consensus 40 ~~~~~C~~C~~~f~~~~~L~~H~~~ 64 (72)
T 1x6e_A 40 EKPYKCLECGKAFSQNSGLINHQRI 64 (72)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHh
Confidence 4579999999999999999999754
No 287
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=72.21 E-value=0.36 Score=33.20 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=26.6
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+.....+--.+... .-+-|++- -.+.+||.||..
T Consensus 2 ~~y~C~vCGyvYd~~~Gdp~~gi~-pGt~fe~l---P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPEDGDPDDGVN-PGTDFKDI---PDDWVCPLCGVG 45 (54)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBC-TTCCGGGS---CTTCBCTTTCCB
T ss_pred CceECCCCCeEECCCcCCcccCcC-CCCChhHC---CCCCcCcCCCCc
Confidence 368999999996654332222222 12345553 235799999874
No 288
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.20 E-value=2.4 Score=30.58 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=22.5
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
..++|..||+.|........|..+ .|+
T Consensus 61 k~~~C~~Cgk~F~~~~~L~~H~~~-~H~ 87 (96)
T 2ctd_A 61 EMFTCHHCGKQLRSLAGMKYHVMA-NHN 87 (96)
T ss_dssp CCCCCSSSCCCCSSHHHHHHHHHH-HTC
T ss_pred CCeECCCCCCeeCCHHHHHHHhHH-hcC
Confidence 568999999999999999999444 354
No 289
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=71.69 E-value=2.9 Score=34.74 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011 115 KELLKELEAMG-FPVARATRALHYSGNANVEAAVNWVV 151 (229)
Q Consensus 115 ~~~l~qL~eMG-F~~~~a~kAL~~Tgn~~~E~A~~WL~ 151 (229)
...+..|.+.| |+++++..||..+|+ +++.|+-=|-
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~G-dv~~Al~eLq 139 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGG-DVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTT-CHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 34588899999 778999999999988 9999997654
No 290
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=71.46 E-value=0.61 Score=31.66 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=25.7
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+.....+--.+...-| +-|++- -.+++||.||..
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPG-TKFEDL---PDDWACPVCGAS 45 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSS-CCTTSS---CTTCCCSSSCCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCC-CchHHC---CCCCcCCCCCCc
Confidence 36899999999764332222222212 235543 234799999875
No 291
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=71.30 E-value=2.4 Score=27.81 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.2
Q ss_pred cceeeccccccccCCHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
...++|..||+.|......+.|..
T Consensus 47 ~~~~~C~~C~~~f~~~~~l~~H~~ 70 (73)
T 1f2i_G 47 QKPFQCRICMRNFSRSDHLTTHIR 70 (73)
T ss_dssp CCCEECTTTCCEESCHHHHHHHHT
T ss_pred CCCeECCCCCchhCCHHHHHHHHH
Confidence 456999999999999999999964
No 292
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=70.98 E-value=1.6 Score=30.22 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=32.9
Q ss_pred ceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCCCCC
Q 027011 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPCRS 54 (229)
Q Consensus 4 ~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~~~~ 54 (229)
..++|.. |++.|......+.|... |.. ..++.|+ .|++.+.+
T Consensus 14 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~ 59 (100)
T 2ebt_A 14 RIHYCDYPGCTKVYTKSSHLKAHLRT--HTG-------EKPYKCTWEGCDWRFAR 59 (100)
T ss_dssp CCEECCSSSCCCEESCHHHHHHHHHH--HSC-------CCCEECCSSSCCCEESS
T ss_pred cceEcCCCCCCCcccCHHHHHHHHHH--hCC-------CCCeeCCCCCCCCccCC
Confidence 4689996 99999999999999875 432 2569996 79986533
No 293
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.69 E-value=1.4 Score=34.25 Aligned_cols=28 Identities=21% Similarity=0.634 Sum_probs=18.2
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
..++|.+||..|+ .....+-+||.|++.
T Consensus 66 ~p~~C~~CG~~F~--------------------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFK--------------------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCC--------------------CCSSCCSSCSSSCCC
T ss_pred ECcChhhCcCeec--------------------ccCCCCCCCcCCCCC
Confidence 3467888887771 112355689999874
No 294
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.50 E-value=3.9 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.9
Q ss_pred Ccceeeccc--cccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCGD--CGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~~--Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|.. |++.|......+.|...
T Consensus 6 gekp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 356799986 99999999999999654
No 295
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=70.07 E-value=0.38 Score=32.67 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=25.6
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+.....+--.+...-| +-|++- -.+++||.||..
T Consensus 1 ~~~~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 1 AKLSCKICGYIYDEDEGDPDNGISPG-TKFEDL---PDDWVCPLCGAP 44 (52)
T ss_dssp CEEEESSSSCEEETTTCBGGGTBCTT-CCGGGS---CTTCBCTTTCCB
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCC-CCHhHC---CCCCcCCCCCCC
Confidence 36899999999655432222222212 224443 234799999974
No 296
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=68.42 E-value=0.24 Score=28.04 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=12.3
Q ss_pred eeeccccccccCCHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEH 24 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~H 24 (229)
.++|+.||+.|........|
T Consensus 2 p~~C~~C~k~f~~~~~L~~H 21 (32)
T 2kfq_A 2 AFACPACPKRFMRSDALSKH 21 (32)
T ss_dssp CSSSSSSCTTHHHHHTTSSS
T ss_pred CCCCCCCCcccCCHHHHHHH
Confidence 35677777776655555555
No 297
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.64 E-value=17 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=32.3
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011 115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (229)
Q Consensus 115 ~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d 155 (229)
.+.|.+.++ .|-++..|+.-|..+++ ++|.|++=.|++.+
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~W-nLe~Av~~ff~~~~ 56 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNN-NLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTS-CHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCC
Confidence 345666654 68899999999999887 99999998888753
No 298
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=65.57 E-value=3.9 Score=27.25 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.0
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|..|++.|......+.|...
T Consensus 44 ~~~~~C~~C~~~f~~~~~L~~H~~~ 68 (77)
T 2cot_A 44 EKPYKCDECGKAFIQRSHLIGHHRV 68 (77)
T ss_dssp SCSEECSSSCCEESSHHHHHHHGGG
T ss_pred CcCeeCCCCCCccCCHHHHHHHHHH
Confidence 4579999999999999999999743
No 299
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=65.46 E-value=0.54 Score=32.30 Aligned_cols=44 Identities=18% Similarity=0.414 Sum_probs=25.4
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+.....+--.+...-| +-|++- -.+++||.||.+
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cga~ 45 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAG-TRWEDI---PADWVCPDCGVG 45 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTT-CCGGGS---CTTCCCTTTCCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 36899999999655432222222212 224443 234799999975
No 300
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=62.23 E-value=0.87 Score=32.73 Aligned_cols=44 Identities=16% Similarity=0.429 Sum_probs=26.0
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+......--.+...-| +-|.+- -.+++||.||.+
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pG-T~f~~l---Pddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPG-TPFVDL---SDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSS-CCGGGS---CTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCC-CchhhC---CCCCcCCCCCCC
Confidence 57999999999654432222222212 234443 234799999975
No 301
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.20 E-value=4.4 Score=28.66 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.6
Q ss_pred ceeeccccccccCCHHHHHHHHHH
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
..|+|..||+.|......+.|...
T Consensus 53 ~~~~C~~C~k~F~~~~~L~~H~~~ 76 (98)
T 2gqj_A 53 DALKCQHCRKQFKSKAGLNYHTMA 76 (98)
T ss_dssp HHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred CCEECCCCCCccCCHHHHHHHHHH
Confidence 468999999999999999999855
No 302
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=61.02 E-value=0.85 Score=33.85 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=25.4
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+.....+--.....-| +-|++- -.+++||.||.+
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAG-TRWDDI---PDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTT-CCTTTS---CTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 47999999999654332111111111 235443 234799999975
No 303
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=60.50 E-value=6.3 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.4
Q ss_pred Ccceeeccc--cccccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGD--CGALLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~ 31 (229)
..+.|+|.. |||.|......+.|..+ -|+
T Consensus 24 GEKPYkC~~~~CgKaFsr~s~L~~H~rr-iHT 54 (73)
T 1x3c_A 24 PYRPYRCVHQGCFAAFTIQQNLILHYQA-VHK 54 (73)
T ss_dssp SSCSCBCCSTTCCCBCSSHHHHHHHHHH-HSS
T ss_pred CCCCeECCCCCcChhHcCHHHHHHHhhh-hCC
Confidence 457899975 99999999999999866 466
No 304
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.17 E-value=21 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHHHHHh-CC-CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011 115 KELLKELEA-MG-FPVARATRALHYSGNANVEAAVNWVVEHEN 155 (229)
Q Consensus 115 ~~~l~qL~e-MG-F~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d 155 (229)
.+.|.+.++ -| =+...|+.-|..+++ |+|.|++=.|++.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~W-nLe~Av~~ff~~~~ 60 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNW-NIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTS-CHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 356777665 57 688999999999987 99999998888754
No 305
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=59.45 E-value=12 Score=23.50 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 116 ~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
+.+.+.++ -|-++..|+.-|..+++ +++.|++=.|++
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Ai~~ff~~ 44 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGW-DLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTS-CSHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence 45666553 58899999999999887 999999877765
No 306
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=56.80 E-value=1.1 Score=33.72 Aligned_cols=44 Identities=16% Similarity=0.430 Sum_probs=24.9
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+++|..||.+.....+--.+...-| +-|.+- -.+++||.||..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPG-TRFEDI---PDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSC-CCGGGC---CTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCC-CChhHC---CCCCCCCCCCCC
Confidence 47999999988654322111111111 224443 234799999875
No 307
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=56.10 E-value=7.9 Score=24.11 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred eeeccccccccCCHHHHHHHHHHhCCCC
Q 027011 5 SLKCGDCGALLRSVQEAQEHAELTSHSN 32 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~n 32 (229)
.+-|..|.+.|.+.+..+.|-+. -|+.
T Consensus 5 GFiCP~C~~~l~s~~~L~~Hye~-~H~~ 31 (34)
T 3mjh_B 5 GFICPQCMKSLGSADELFKHYEA-VHDA 31 (34)
T ss_dssp EEECTTTCCEESSHHHHHHHHHH-HTSS
T ss_pred ccCCcHHHHHcCCHHHHHHHHHh-cccc
Confidence 47899999999999999999988 6653
No 308
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.45 E-value=4.6 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.8
Q ss_pred Ccceeecc-ccccccCCHHHHHHHHHH
Q 027011 2 AGVSLKCG-DCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 2 ~~~slkC~-~Cg~~L~~~~~aq~Ha~~ 27 (229)
....++|. .||+.|......+.|...
T Consensus 33 ~~~p~~C~~~C~k~f~~~~~L~~H~~~ 59 (66)
T 2eod_A 33 PRLPVACPNQCGVGTVAREDLPGHLKD 59 (66)
T ss_dssp SSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred CCcCccCCcccCcccccHHHHHHHHHh
Confidence 35689999 999999988888999653
No 309
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=54.27 E-value=5.2 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=17.4
Q ss_pred cceeeccccccccCCHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~ 26 (229)
+..+.|..||+.+.. .+.|.|..
T Consensus 7 ~~~~~C~~C~~~i~~-~~~~EH~D 29 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV-WDMPEHMD 29 (39)
T ss_dssp CCEEECTTTCCEEEG-GGHHHHHH
T ss_pred CCCcccccccCcCCc-ccccchhh
Confidence 456889999999887 55577754
No 310
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.99 E-value=45 Score=23.94 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=29.5
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 116 ELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 116 ~~l~qL~eM--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
+.+.|+.++ -+....+.+.|.+.++ |+|.+++-|++..
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~-nvE~vin~LLE~~ 54 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHY-DPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCC-CHHHHHHHHHccC
Confidence 456666665 3556888999998766 9999999999963
No 311
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=50.41 E-value=18 Score=30.42 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc-C-CCCHHH
Q 027011 115 KELLKELEAMGFPVARATRALHYS-G-NANVEA 145 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~T-g-n~~~E~ 145 (229)
+++++.|+.+||++..|.+|+..- . +.++|.
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~ 193 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKIARPDASSET 193 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHH
Confidence 579999999999999999999875 2 335654
No 312
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=48.29 E-value=6.1 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=20.1
Q ss_pred cceeecc--ccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCG--DCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~--~Cg~~L~~~~~aq~Ha~~ 27 (229)
...++|. .||+.|......+.|...
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence 4678996 799999998888888653
No 313
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=47.08 E-value=5.3 Score=29.08 Aligned_cols=28 Identities=25% Similarity=0.702 Sum_probs=18.7
Q ss_pred eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~ 51 (229)
.+.|++|++... ..|. ++-++|+.||+-
T Consensus 37 ~I~CnDC~~~s~--------------v~~h-----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 37 DILCNDCNGRST--------------VQFH-----ILGMKCKICESY 64 (79)
T ss_dssp EEEESSSCCEEE--------------EECC-----TTCCCCTTTSCC
T ss_pred EEECCCCCCCcc--------------CCce-----eecccCcCCCCc
Confidence 478999987632 2221 345699999985
No 314
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=46.54 E-value=27 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 027011 115 KELLKELEAMGFPVARATRALHYS 138 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~T 138 (229)
+++++.|+.+||++..|.+|+..-
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 679999999999999999998764
No 315
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=45.80 E-value=5.3 Score=25.93 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=10.4
Q ss_pred CCcceeecccccc
Q 027011 1 MAGVSLKCGDCGA 13 (229)
Q Consensus 1 ~~~~slkC~~Cg~ 13 (229)
|+...++|..||.
T Consensus 1 m~~~~~~CP~C~~ 13 (50)
T 1pft_A 1 MVNKQKVCPACES 13 (50)
T ss_dssp CCSSCCSCTTTSC
T ss_pred CCCccEeCcCCCC
Confidence 5667888999986
No 316
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=45.67 E-value=28 Score=23.66 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=33.2
Q ss_pred CCCHHHHHHHH--hCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011 112 EVDKELLKELE--AMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (229)
Q Consensus 112 ~vd~~~l~qL~--eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d 155 (229)
.+.++.+.|.. =-|=|++...|-|+.|+ -++..|+|-|++.-|
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTn-LdVN~AvNNlLsRDd 51 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTN-LDVNLAVNNLLSRDD 51 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTT-TCHHHHHHHHHC---
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHhC-ccHHHHHHHHhcccc
Confidence 45667776643 46999999999999995 599999999998744
No 317
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=45.48 E-value=12 Score=29.30 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHcCC--CCHHHHHHHHHhCCCC
Q 027011 124 MGFPVARATRALHYSGN--ANVEAAVNWVVEHEND 156 (229)
Q Consensus 124 MGF~~~~a~kAL~~Tgn--~~~E~A~~WL~~h~dD 156 (229)
|+|++++-.+-|..=++ .+++.+..|++.|...
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~ 35 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRD 35 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGG
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhh
Confidence 89999999888876554 3788899999999653
No 318
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.57 E-value=12 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=25.6
Q ss_pred eeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA 46 (229)
Q Consensus 6 lkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~ 46 (229)
++|..||+.|......+.|... |+. ..+|.|+
T Consensus 63 ~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~ 94 (95)
T 2ej4_A 63 EECPREGKSFKAKYKLVNHIRV--HTG-------EKSGPSS 94 (95)
T ss_dssp TTCSSTTCCCSSHHHHHHHHHH--HHT-------CCCCSSC
T ss_pred cCCCCCCcccCCHHHHHHHHHh--cCC-------CCCCCCC
Confidence 8999999999999999999764 532 2467775
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.23 E-value=8.4 Score=30.83 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=24.0
Q ss_pred eeccccccc--cCCHH--HHHHH-HHHhCCCCCCch-hhhhhhccCCCCCCC
Q 027011 6 LKCGDCGAL--LRSVQ--EAQEH-AELTSHSNFSES-TEAVLNLVCATCGKP 51 (229)
Q Consensus 6 lkC~~Cg~~--L~~~~--~aq~H-a~~T~H~nFse~-~E~vl~l~C~~Cg~~ 51 (229)
|.|..||++ +.+.. ..+.+ +.. ..|.-. ...++--.|+.|.++
T Consensus 108 liC~~CG~v~e~~~~~~~~~~~~~~~~---~Gf~i~~~~l~~~GiC~~C~~~ 156 (162)
T 4ets_A 108 MICKNCGKIIEFENPIIERQQALIAKE---HGFKLTGHLMQLYGVCGDCNNQ 156 (162)
T ss_dssp EEETTTCCEEEECCHHHHHHHHHHHHH---TTCEEEEEEEEEEEECSTTC--
T ss_pred EEECCCCCEEEecccchhHHHHHHHHh---CCCEEEEEEEEEEEEChHHcCc
Confidence 789999999 44432 22333 333 345432 233445689999875
No 320
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=40.98 E-value=9.4 Score=29.24 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=22.6
Q ss_pred eeccccccccCC---HHHHHHHHHHhCCCCCCc
Q 027011 6 LKCGDCGALLRS---VQEAQEHAELTSHSNFSE 35 (229)
Q Consensus 6 lkC~~Cg~~L~~---~~~aq~Ha~~T~H~nFse 35 (229)
.-|..||.++=| +.-|..|++.|||.-+-.
T Consensus 37 W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~ 69 (109)
T 3c5k_A 37 WVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLS 69 (109)
T ss_dssp EEETTTCCEEECTTTTCHHHHHHHHHCCCEEEE
T ss_pred eeeeecCccccCCCcChHHHHHhcccCCCEEEE
Confidence 447778888543 556999999999987654
No 321
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=40.93 E-value=3.7 Score=43.70 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhC-CCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 113 VDKELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 113 vd~~~l~qL~eM-GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
++..+|.+|-++ |-+--.|+|||..++| |+|.|++||...
T Consensus 4 ita~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LRkk 44 (1289)
T 3avx_A 4 ITASLVKELRERTGAGMMDCKKALTEANG-DIELAIENMRKS 44 (1289)
T ss_dssp SCCSCTHHHHTTTCCCTTTTTTTTTTTTT-CHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 445567788764 7888899999999988 999999999754
No 322
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=40.88 E-value=17 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred eeeccccccccCCHHHHHHHHHH
Q 027011 5 SLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 5 slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
.++|..|+..+.+.+-.+.|-+.
T Consensus 3 k~~CpvCk~q~Pd~kt~~~H~e~ 25 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTLQIHVME 25 (28)
T ss_dssp CEECTTSSCEESSHHHHHHHHHH
T ss_pred cccCccccccCcChHHHHHHHHH
Confidence 57899999999999999999764
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.48 E-value=7.2 Score=30.50 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=22.2
Q ss_pred eeeccccccc--cCCH--HHHHHHH-HHhCCCCCCc-hhhhhhhccCCCCCCC
Q 027011 5 SLKCGDCGAL--LRSV--QEAQEHA-ELTSHSNFSE-STEAVLNLVCATCGKP 51 (229)
Q Consensus 5 slkC~~Cg~~--L~~~--~~aq~Ha-~~T~H~nFse-~~E~vl~l~C~~Cg~~ 51 (229)
-|.|..||++ +... ...+.+. ..+ .|.- +...++--.|+.|.++
T Consensus 90 HliC~~Cg~v~~~~~~~~~~~~~~~~~~~---gf~i~~~~l~~~GiC~~C~~~ 139 (145)
T 3eyy_A 90 HLVCRDCTNVIEADLSVAADFTAKLREQF---GFDTDMKHFAIFGRCESCSLK 139 (145)
T ss_dssp EEEESSSSCEEEECGGGGHHHHHHHHHHT---CEEECSCSSCEEEEECC----
T ss_pred EEEECCCCCEEEecCccHHHHHHHHHHhC---CCEEEeEEEEEEEECHHHhCc
Confidence 3789999999 3322 2333333 333 3432 2233455689999875
No 324
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=37.24 E-value=13 Score=29.23 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=19.9
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
...|.|..|++.|......+.|-..
T Consensus 48 ekpfyC~~C~K~F~~~~~L~~H~rs 72 (124)
T 1zr9_A 48 GGLHRCLACARYFIDSTNLKTHFRS 72 (124)
T ss_dssp GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred CcceEcccCcchhCCHHHHHHHHhh
Confidence 4568899999999988888877644
No 325
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.50 E-value=53 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 116 ~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
+.+.+.++ .|=++..|+.-|..+++ ++|.|++=.+++.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~W-dLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHW-QFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTT-CHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 45666553 58899999999999887 9999998887753
No 326
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=35.97 E-value=15 Score=25.14 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVE 152 (229)
Q Consensus 115 ~~~l~qL~eM--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (229)
++.+++|.+| .++++..+-.|.+.++ +++.|+|-|++
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G-~~~~~IdaLLq 51 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAAS-RIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC---CGGGC----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 4678999999 2446777888888766 89999988765
No 327
>1lqs_L Interleukin-10-like protein; helix bundle, receptor complex, molecular recognition, structure mimic, immune system; HET: NAG; 2.70A {Human herpesvirus 5} SCOP: a.26.1.3
Probab=35.86 E-value=31 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhccc--------------CCCccchhhHHHHHHHHHHHHH
Q 027011 183 IKLKAQELRYGIFYAVYFF--------------SDGYCNCYMLSYITNAFLDTIF 223 (229)
Q Consensus 183 kkaK~~ELr~ki~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 223 (229)
--..++|||..-.+-+.|+ -.++.+||+++-+.+-+||++|
T Consensus 24 i~~~L~eLr~~f~~IK~~~QakD~~~vLL~~~l~k~~~~C~~l~~lL~FYLe~V~ 78 (157)
T 1lqs_L 24 YATRLQDLRVTFHRVKPTLQREDDYSVWLDGTVVKGCWGCSVMDWLLRRYLEIVF 78 (157)
T ss_dssp GHHHHHHHHHHHHHHHHHHTSSCCSCCSSCSSTTCSTTHHHHHHHHHHHHHHTHH
T ss_pred cchHHHHHHHHHHHHHHHhcccchHHHhccHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 4466777776655555533 4589999999999999999987
No 328
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=34.88 E-value=19 Score=30.21 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----HHHhhc
Q 027011 142 NVEAAVNWVVEHENDPDIDEM-PMVPVSGGGGASKSSLTPEEIKLKAQELRYG----IFYAVY 199 (229)
Q Consensus 142 ~~E~A~~WL~~h~dD~did~p-l~~p~~s~s~~~~~~LTeEEkkaK~~ELr~k----i~~~~~ 199 (229)
-+++|+.||.+| .+ .+|.. +.-.-|. .-.+|+||.++.+.+.-+. |.+.||
T Consensus 87 Qv~AAl~yl~~~-~~-~id~~~Fe~~cGV-----GV~VT~EqI~~~V~~~i~~~k~~i~~~RY 142 (187)
T 3tl4_X 87 QVDAAFKYVKAN-GE-ASTKMGMNENSGV-----GIEITEDQVRNYVMQYIQENKERILTERY 142 (187)
T ss_dssp HHHHHHHHHHHH-GG-GCCHHHHHHTTTT-----TCCCCHHHHHHHHHHHHHHTHHHHHHHGG
T ss_pred HHHHHHHHHHhC-CC-CCCHHHHHHHCCC-----CeEeCHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 488999999998 22 22221 2111111 2368999999998887665 555554
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.94 E-value=9.5 Score=29.57 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=25.0
Q ss_pred eeeccccccc--cCCHH--HHHHH-HHHhCCCCCCch-hhhhhhccCCCCCCC
Q 027011 5 SLKCGDCGAL--LRSVQ--EAQEH-AELTSHSNFSES-TEAVLNLVCATCGKP 51 (229)
Q Consensus 5 slkC~~Cg~~--L~~~~--~aq~H-a~~T~H~nFse~-~E~vl~l~C~~Cg~~ 51 (229)
-|.|..||++ +.+.. ..+.+ +.. ..|.-. ...++--.|+.|.++
T Consensus 87 HliC~~Cg~v~~~~~~~~~~~~~~~~~~---~gf~i~~~~l~~~GiC~~C~~~ 136 (139)
T 3mwm_A 87 HLVCRACGKAVEVEGPAVEKWAEAIAAE---HGYVNVAHTVEIFGTCADCAGA 136 (139)
T ss_dssp EEEETTTCCEEEECCHHHHHHHHHHHHH---TTCCSCCCCCEEEECCHHHHCC
T ss_pred EEEECCCCCEeecccccHHHHHHHHHHh---CCCEEEeeEEEEEEEChHHhCc
Confidence 3889999999 44432 22222 333 344322 233455689999764
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.89 E-value=20 Score=27.28 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=23.4
Q ss_pred eeeccccccc--cCCH--HHHHHH-HHHhCCCCCCch-hhhhhhccCCCCCC
Q 027011 5 SLKCGDCGAL--LRSV--QEAQEH-AELTSHSNFSES-TEAVLNLVCATCGK 50 (229)
Q Consensus 5 slkC~~Cg~~--L~~~--~~aq~H-a~~T~H~nFse~-~E~vl~l~C~~Cg~ 50 (229)
-+.|..||++ +... .+.+.. +..+ .|.-. .+.++--.|+.|.+
T Consensus 83 HliC~~Cg~v~~~~~~~~~~~~~~~~~~~---gf~i~~~~l~~~G~C~~C~~ 131 (131)
T 2o03_A 83 HLVCRSCGSTIEVGDHEVEAWAAEVATKH---GFSDVSHTIEIFGTCSDCRS 131 (131)
T ss_dssp EEEETTTCCEEEECCHHHHHHHHHHHHHT---TCSSCCCCCEEEECCTTTC-
T ss_pred EEEeCCCCCEEEECCcCHHHHHHHHHHhc---CCEEeccEEEEEEEChhhcC
Confidence 4789999999 4332 222322 3333 44332 23344567999963
No 331
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=32.83 E-value=28 Score=22.41 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=19.7
Q ss_pred cceeecc--ccccccCCHHHHHHHH
Q 027011 3 GVSLKCG--DCGALLRSVQEAQEHA 25 (229)
Q Consensus 3 ~~slkC~--~Cg~~L~~~~~aq~Ha 25 (229)
...++|. .|++.|........|.
T Consensus 45 ~~~~~C~~~~C~k~f~~~~~l~~H~ 69 (72)
T 2epa_A 45 EKPFSCSWKGCERRFARSDELSRHR 69 (72)
T ss_dssp SCSEECCCTTCCCEESSHHHHHHHT
T ss_pred CCCccCCCCCCCcccCCHHHHHhHh
Confidence 4679996 4999999999999885
No 332
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.72 E-value=36 Score=19.83 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027011 182 EIKLKAQELRYGIFYAV 198 (229)
Q Consensus 182 EkkaK~~ELr~ki~~~~ 198 (229)
|--..++.||+++|.-|
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555565555443
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.23 E-value=9.5 Score=29.95 Aligned_cols=45 Identities=13% Similarity=0.337 Sum_probs=25.2
Q ss_pred eeeccccccc--cCCHH--HHHHHHHHhCCCCCCch-hhhhhhccCCCCCCC
Q 027011 5 SLKCGDCGAL--LRSVQ--EAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (229)
Q Consensus 5 slkC~~Cg~~--L~~~~--~aq~Ha~~T~H~nFse~-~E~vl~l~C~~Cg~~ 51 (229)
-|.|..||++ +.+.. ..+..... ...|.-. ...++--.|+.|.++
T Consensus 99 HliC~~Cg~v~~~~~~~~~~~~~~~~~--~~gf~i~~~~l~~~GiC~~C~~~ 148 (150)
T 2xig_A 99 HIICLHCGKIIEFADPEIENRQNEVVK--KYQAKLISHDMKMFVWCKECQES 148 (150)
T ss_dssp EEEETTTCCEEEECCHHHHHHHHHHHH--TTTCEEEEEEEEEEEECHHHHCC
T ss_pred EEEECCCCCEEEecCCCHHHHHHHHHH--HcCCEEeeeEEEEEEEChhhccC
Confidence 4789999999 44432 22333222 2355432 233444579999653
No 334
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=29.79 E-value=25 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.9
Q ss_pred eccccccc--cC--CHHHHHHHHHHhCCC
Q 027011 7 KCGDCGAL--LR--SVQEAQEHAELTSHS 31 (229)
Q Consensus 7 kC~~Cg~~--L~--~~~~aq~Ha~~T~H~ 31 (229)
.|..||.+ .+ .+.-|..|.+.|||.
T Consensus 36 lCL~CG~VGC~r~s~~~HA~~H~~~t~Hp 64 (102)
T 2ida_A 36 ICRTCGHVGCCDDSPHKHATRHFHATGHP 64 (102)
T ss_dssp EESSSCCCCBCTTSTTCHHHHHHHHHCCC
T ss_pred eeeEcCCCcccCCCccHHHHHHHhccCCC
Confidence 58888888 33 356699999999998
No 335
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=27.93 E-value=60 Score=21.10 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=18.4
Q ss_pred HHHHHHHhC-CCCH-HHHHHHHHHcCCCCHHHHHH
Q 027011 116 ELLKELEAM-GFPV-ARATRALHYSGNANVEAAVN 148 (229)
Q Consensus 116 ~~l~qL~eM-GF~~-~~a~kAL~~Tgn~~~E~A~~ 148 (229)
++|.+..++ |-+. ++|+.=|..+|+ +++.|++
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nW-DLe~Av~ 40 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNW-DLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTT-CHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCC-cHHHHHH
Confidence 445555443 5553 666666666655 6666653
No 336
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=27.85 E-value=26 Score=23.59 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=29.7
Q ss_pred cccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCC
Q 027011 9 GDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKP 51 (229)
Q Consensus 9 ~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~ 51 (229)
.+|++.|.+..+...|..+ -|..=... ....+|+|. .|+..
T Consensus 7 ~~C~~~f~~~~~l~~Hv~~-~Hv~~~~~-~~~~~~~C~W~~C~~~ 49 (64)
T 1zw8_A 7 KECPESASSLFDLQRHLLK-DHVSQDFK-HPMEPLACNWEDCDFL 49 (64)
T ss_dssp TTCCCCCSSHHHHHHHHHH-HSCCCCCC-CSSCCEECCCSSCCCE
T ss_pred CCCCCcCCCHHHHHHHHHh-hccCcccC-CCCCCCEeeCCCCcCC
Confidence 4699999999999999875 67643311 122479997 99875
No 337
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.14 E-value=1.2e+02 Score=20.82 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=30.6
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEAMG--FPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~eMG--F~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
+.+++++.+|= .|.+..+.-|..|| +++..++=|++.
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienILeG 52 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR--SVEITTDNILEG 52 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC--SHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHHhc
Confidence 46788888882 56799999999998 499999998875
No 338
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=27.05 E-value=49 Score=29.73 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCC---CHHHHHHHHHh
Q 027011 115 KELLKELEAMGFPVARATRALHYSGNA---NVEAAVNWVVE 152 (229)
Q Consensus 115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~---~~E~A~~WL~~ 152 (229)
+..|..|.+|||+..+..++|...-.. ++..=+++|..
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~ 87 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFIL 87 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHH
Confidence 346888999999999999999886553 33334455544
No 339
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=26.87 E-value=48 Score=28.61 Aligned_cols=50 Identities=32% Similarity=0.398 Sum_probs=35.2
Q ss_pred CCCcccCCCCCHHHHHHH-HhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 104 QPEEMVEPEVDKELLKEL-EAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 104 ~gEe~l~~~vd~~~l~qL-~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
|-++.....+|...+..| ..|||+++...++|..-....+.++-.+|.++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~y~ll~~~ 322 (336)
T 3h4j_B 272 PMEEVQGSYADSRIVSKLGEAMGFSEDYIVEALRSDENNEVKEAYNLLHEN 322 (336)
T ss_dssp CCCCCCCCCCCHHHHHHHHHTTCCCHHHHHHHTTSSSCCSSTTHHHHHHHH
T ss_pred CchhcccccCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 333333456788888888 57999999999999875555566665666544
No 340
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=26.67 E-value=43 Score=24.89 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.3
Q ss_pred Ccceeecccccc---ccCCHHHHHHHHHHhCCC
Q 027011 2 AGVSLKCGDCGA---LLRSVQEAQEHAELTSHS 31 (229)
Q Consensus 2 ~~~slkC~~Cg~---~L~~~~~aq~Ha~~T~H~ 31 (229)
.++.++|.+|.. ...+....+.|++. -|.
T Consensus 42 ~A~~i~C~VCr~tFm~t~~~~~L~~H~e~-KHp 73 (86)
T 1wvk_A 42 KAMSIQCKVCMQTFICTTSEVKCREHAEA-KHP 73 (86)
T ss_dssp TTCCEEETTTTEEECCSSCSHHHHHHHHT-CCS
T ss_pred HhhCCCChHhHhhHHhcCChHHHHHHHHc-CCC
Confidence 478999999999 78889999999997 664
No 341
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=26.36 E-value=9.9 Score=29.33 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=38.3
Q ss_pred ceeeccccccccCCHHHHHHHHHHhCCCC-------------------C-----CchhhhhhhccCCCCCCCCCCccccc
Q 027011 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN-------------------F-----SESTEAVLNLVCATCGKPCRSKTETD 59 (229)
Q Consensus 4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n-------------------F-----se~~E~vl~l~C~~Cg~~~~~~~E~~ 59 (229)
..+.|..|+..|.+...++.|-.-.-|.. | +........+.|.-|++.+.|..-..
T Consensus 31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~ 110 (127)
T 1zu1_A 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE 110 (127)
T ss_dssp CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence 35789999999999999988873111210 0 01112244578888888776655554
Q ss_pred cccccc
Q 027011 60 LHRKRT 65 (229)
Q Consensus 60 ~a~K~t 65 (229)
.|.+.-
T Consensus 111 ~H~~gk 116 (127)
T 1zu1_A 111 SHYIGK 116 (127)
T ss_dssp HHHTSH
T ss_pred HHHCCH
Confidence 444433
No 342
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=26.28 E-value=20 Score=25.65 Aligned_cols=9 Identities=56% Similarity=1.305 Sum_probs=8.0
Q ss_pred ccCCCCCCC
Q 027011 43 LVCATCGKP 51 (229)
Q Consensus 43 l~C~~Cg~~ 51 (229)
-.||.||++
T Consensus 10 ~~CP~Cgkp 18 (68)
T 1lv3_A 10 VNCPTCGKT 18 (68)
T ss_dssp EECTTTCCE
T ss_pred CcCCCCCCc
Confidence 589999997
No 343
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=26.09 E-value=94 Score=27.84 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhh--cccCCCccchhhHHHHHHHHH
Q 027011 175 KSSLTPEEIKLKAQELRYGIFYAV--YFFSDGYCNCYMLSYITNAFL 219 (229)
Q Consensus 175 ~~~LTeEEkkaK~~ELr~ki~~~~--~~~~~~~~~~~~~~~~~~~~~ 219 (229)
-+.|+++|+++=++.|+..-|.-+ ||+.|.--|--.=+|+..||.
T Consensus 184 ~rnl~~~ErqeLl~~Lk~~YR~IlL~YF~~d~~~Nq~ID~FVN~aFF 230 (289)
T 1r8j_A 184 LRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFVNMAFF 230 (289)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh
Confidence 456999999999999999888754 999999999888888888775
No 344
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=25.81 E-value=1.3e+02 Score=20.73 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011 115 KELLKELEAMG--FPVARATRALHYSGNANVEAAVNWVVEH 153 (229)
Q Consensus 115 ~~~l~qL~eMG--F~~~~a~kAL~~Tgn~~~E~A~~WL~~h 153 (229)
+.+++++.+|= +|.+..+.-|..||+ ++..++=|++.
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rTgS--Ve~TienILeG 56 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLTRS--VEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHCC--HHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC--HHHHHHHHHcc
Confidence 35677777772 567999999999965 99999888763
No 345
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=25.60 E-value=48 Score=28.33 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Q 027011 175 KSSLTPEEIKLKAQELRYGIFYAV 198 (229)
Q Consensus 175 ~~~LTeEEkkaK~~ELr~ki~~~~ 198 (229)
...|++++|++|+.+|.++|++-.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
T 3n5l_A 272 NANLGAEEKAAKLKALDEELAKLE 295 (310)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999998754
No 346
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=24.36 E-value=22 Score=21.84 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.1
Q ss_pred ceeecccccccc
Q 027011 4 VSLKCGDCGALL 15 (229)
Q Consensus 4 ~slkC~~Cg~~L 15 (229)
.-|+|..||.++
T Consensus 5 ~fY~C~~CGniv 16 (36)
T 1dxg_A 5 DVYKCELCGQVV 16 (36)
T ss_dssp CEEECTTTCCEE
T ss_pred cEEEcCCCCcEE
Confidence 358899998874
No 347
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=23.90 E-value=78 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Q 027011 175 KSSLTPEEIKLKAQELRYGIFYAV 198 (229)
Q Consensus 175 ~~~LTeEEkkaK~~ELr~ki~~~~ 198 (229)
....|.||+++++++|+++|+.--
T Consensus 29 ~~~~~~~~a~~~~~~i~~~i~~g~ 52 (115)
T 2lj4_A 29 TADVTYEDAIKELQKWSQRIASGE 52 (115)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTS
T ss_pred cccccHHHHHHHHHHHHHHHHcCc
Confidence 456789999999999999998753
No 348
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=23.19 E-value=58 Score=28.22 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Q 027011 175 KSSLTPEEIKLKAQELRYGIFYAV 198 (229)
Q Consensus 175 ~~~LTeEEkkaK~~ELr~ki~~~~ 198 (229)
...|++++|++|+.+|.++|++-.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ 304 (321)
T 3p7i_A 281 NKGLNEQDKLAKTTAIQAQLDDLD 304 (321)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999998754
No 349
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=23.07 E-value=17 Score=30.20 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=0.0
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHc
Q 027011 114 DKELLKELEAMGFPVARATRALHYS 138 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~~T 138 (229)
.+++++.|+.+||++..|.+|+..-
T Consensus 146 ~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 146 AEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
No 350
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=22.37 E-value=33 Score=26.99 Aligned_cols=30 Identities=20% Similarity=-0.006 Sum_probs=21.1
Q ss_pred eeccccccc--cCC-------HHHHHHHHHHhCCCCCCc
Q 027011 6 LKCGDCGAL--LRS-------VQEAQEHAELTSHSNFSE 35 (229)
Q Consensus 6 lkC~~Cg~~--L~~-------~~~aq~Ha~~T~H~nFse 35 (229)
.-|..||.+ .|. +.-|..|.+.|||.-+-.
T Consensus 47 wlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~ 85 (129)
T 2g45_A 47 WLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVK 85 (129)
T ss_dssp EEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEE
T ss_pred EEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEE
Confidence 346666766 222 567999999999976653
No 351
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.91 E-value=71 Score=21.45 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=20.9
Q ss_pred cceeeccccccccCCHHHHHHHHHH
Q 027011 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (229)
Q Consensus 3 ~~slkC~~Cg~~L~~~~~aq~Ha~~ 27 (229)
..++.|..|+..++-....+.|...
T Consensus 10 ~~~~~CPrCn~~f~~~~sLr~Hmky 34 (49)
T 2e72_A 10 GGRKICPRCNAQFRVTEALRGHMCY 34 (49)
T ss_dssp SSCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred CCceeCCcccccccchHHHHhhhhh
Confidence 3577899999999999999988874
No 352
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=21.65 E-value=43 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027011 176 SSLTPEEIKLKAQELRYGI 194 (229)
Q Consensus 176 ~~LTeEEkkaK~~ELr~ki 194 (229)
++||+||.++.++++++++
T Consensus 70 ~~ls~eei~~~l~~~~~~~ 88 (88)
T 3b09_A 70 SAVSMEELQVAFTEISRRL 88 (88)
T ss_dssp CSSCHHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 4699999999999998753
No 353
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.01 E-value=38 Score=24.41 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.9
Q ss_pred hhccCCCCCCC
Q 027011 41 LNLVCATCGKP 51 (229)
Q Consensus 41 l~l~C~~Cg~~ 51 (229)
..++||.||+.
T Consensus 25 ~ky~C~fCgk~ 35 (72)
T 3jyw_9 25 ARYDCSFCGKK 35 (72)
T ss_dssp SCBCCSSCCSS
T ss_pred cCccCCCCCCc
Confidence 45899999985
No 354
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.87 E-value=27 Score=24.49 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=5.5
Q ss_pred HhCCCCCCchhhhhhhccCCCCCC
Q 027011 27 LTSHSNFSESTEAVLNLVCATCGK 50 (229)
Q Consensus 27 ~T~H~nFse~~E~vl~l~C~~Cg~ 50 (229)
.||-++++........|.|..||.
T Consensus 6 ~~~g~~~~~~~~~~v~Y~C~~Cg~ 29 (63)
T 3h0g_L 6 STGGTAFNPPRPATMIYLCADCGA 29 (63)
T ss_dssp -------------CCCCBCSSSCC
T ss_pred cCCccccCCCCCCCeEEECCCCCC
Confidence 344444444433334455555554
No 355
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.71 E-value=1.6e+02 Score=20.45 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=31.2
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011 115 KELLKELEAMG--FPVARATRALHYSGNANVEAAVNWVVEHE 154 (229)
Q Consensus 115 ~~~l~qL~eMG--F~~~~a~kAL~~Tgn~~~E~A~~WL~~h~ 154 (229)
+.+++++.+|= +|.+..+.-|..|| +++..++=|++..
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienILeGr 53 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG--CVDLTITNLLEGA 53 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC--CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHHcCC
Confidence 46788888882 56799999999997 5999999998764
No 356
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=20.50 E-value=65 Score=24.64 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=30.0
Q ss_pred CH-HHHHHHHHHHHHHHHHh--hcccCCCccchhhHHHHHHHHH
Q 027011 179 TP-EEIKLKAQELRYGIFYA--VYFFSDGYCNCYMLSYITNAFL 219 (229)
Q Consensus 179 Te-EEkkaK~~ELr~ki~~~--~~~~~~~~~~~~~~~~~~~~~~ 219 (229)
|+ +|++.=++.|+..-|.- -||..|.--|--.=+|+..||.
T Consensus 2 t~~~er~~ll~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aFf 45 (102)
T 1r5q_A 2 TQEVDQQILLQQLKSDYRQILLSYFTTDKALKEKIDKFINAVFC 45 (102)
T ss_dssp --CCCTHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 45 67888888888877765 4999999999888888888775
No 357
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=20.32 E-value=65 Score=29.02 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=30.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHH----HcCC--CCHHHHHHHHHhCC
Q 027011 114 DKELLKELEAMGFPVARATRALH----YSGN--ANVEAAVNWVVEHE 154 (229)
Q Consensus 114 d~~~l~qL~eMGF~~~~a~kAL~----~Tgn--~~~E~A~~WL~~h~ 154 (229)
+...|...++|||+....++++. .||. .+++.-++=|+...
T Consensus 119 ~~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~~~ 165 (345)
T 3t6p_A 119 NTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAE 165 (345)
T ss_dssp CSHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHhcc
Confidence 44678889999999999987765 4554 57777776666543
Done!