Query 027012
Match_columns 229
No_of_seqs 137 out of 423
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06017 Myosin_TH1: Myosin ta 100.0 4.8E-48 1E-52 330.2 20.0 180 48-227 2-189 (199)
2 KOG0162 Myosin class I heavy c 100.0 3.5E-31 7.5E-36 256.2 6.8 171 42-214 713-901 (1106)
3 KOG0164 Myosin class I heavy c 100.0 3E-29 6.5E-34 242.5 11.2 178 47-228 799-992 (1001)
4 PF14593 PH_3: PH domain; PDB: 97.4 0.0013 2.8E-08 51.3 9.1 73 92-168 10-83 (104)
5 cd01262 PH_PDK1 3-Phosphoinosi 96.8 0.009 2E-07 45.4 8.0 69 96-167 2-71 (89)
6 PF12456 hSac2: Inositol phosp 96.3 0.019 4.2E-07 45.3 7.4 58 92-149 28-92 (115)
7 PF14470 bPH_3: Bacterial PH d 95.6 0.33 7.2E-06 35.6 11.1 81 91-173 3-86 (96)
8 smart00233 PH Pleckstrin homol 95.2 0.69 1.5E-05 32.3 11.1 85 96-181 2-97 (102)
9 PF00169 PH: PH domain; Inter 95.1 0.8 1.7E-05 32.7 11.9 85 96-181 2-99 (104)
10 cd00900 PH-like Pleckstrin hom 94.3 0.78 1.7E-05 32.0 9.6 71 108-179 17-94 (99)
11 PF10480 ICAP-1_inte_bdg: Beta 91.6 1 2.2E-05 38.8 7.8 71 111-183 108-192 (200)
12 cd00934 PTB Phosphotyrosine-bi 91.6 2 4.4E-05 32.6 8.9 77 108-184 39-121 (123)
13 cd00821 PH Pleckstrin homology 91.4 2.3 4.9E-05 29.2 8.4 73 108-181 14-93 (96)
14 PF00640 PID: Phosphotyrosine 91.1 2.5 5.3E-05 33.0 9.2 77 108-184 49-132 (140)
15 cd01225 PH_Cool_Pix Cool (clon 90.7 4.7 0.0001 31.9 10.1 87 93-182 10-106 (111)
16 cd01244 PH_RasGAP_CG9209 RAS_G 90.0 2.7 5.9E-05 32.1 8.2 70 110-180 21-94 (98)
17 smart00462 PTB Phosphotyrosine 86.8 8.4 0.00018 29.8 9.4 77 108-184 41-123 (134)
18 cd01260 PH_CNK Connector enhan 86.6 8.2 0.00018 28.4 8.8 73 109-181 19-93 (96)
19 cd01267 CED6_AIDA1b Phosphotyr 85.6 7.9 0.00017 30.7 8.7 76 109-184 43-126 (132)
20 cd01257 PH_IRS Insulin recepto 84.6 16 0.00035 28.0 10.9 83 95-181 2-98 (101)
21 cd01233 Unc104 Unc-104 pleckst 79.3 24 0.00052 26.4 11.4 84 95-180 2-93 (100)
22 PF15277 Sec3-PIP2_bind: Exocy 77.4 25 0.00053 26.5 8.3 53 129-183 32-89 (91)
23 cd01261 PH_SOS Son of Sevenles 76.3 35 0.00077 26.8 9.9 79 94-173 3-97 (112)
24 cd01273 CED-6 CED-6 Phosphotyr 76.1 34 0.00073 27.6 9.4 76 108-183 52-134 (142)
25 PF06713 bPH_4: Bacterial PH d 76.1 21 0.00046 25.6 7.4 61 117-181 5-73 (74)
26 cd01220 PH_CDEP Chondrocyte-de 74.7 35 0.00076 25.9 9.6 78 99-178 6-90 (99)
27 cd01252 PH_cytohesin Cytohesin 73.6 40 0.00087 26.1 9.7 82 100-182 5-110 (125)
28 cd01230 PH_EFA6 EFA6 Pleckstri 73.0 39 0.00084 26.6 8.8 73 111-183 27-109 (117)
29 cd01246 PH_oxysterol_bp Oxyste 72.9 30 0.00065 24.4 11.0 79 100-179 4-86 (91)
30 cd01238 PH_Tec Tec pleckstrin 71.5 42 0.00092 25.5 8.6 69 110-179 21-101 (106)
31 cd01226 PH_exo84 Exocyst compl 69.4 51 0.0011 25.5 9.5 88 95-183 2-99 (100)
32 cd01251 PH_centaurin_alpha Cen 68.2 50 0.0011 25.0 8.6 69 110-179 16-94 (103)
33 smart00568 GRAM domain in gluc 67.9 32 0.00069 23.1 6.5 46 97-146 12-59 (61)
34 cd01268 Numb Numb Phosphotyros 67.8 51 0.0011 26.9 8.6 53 109-161 48-100 (138)
35 cd01219 PH_FGD FGD (faciogenit 67.8 50 0.0011 24.8 10.7 83 97-181 4-98 (101)
36 cd01240 PH_beta-ARK Beta adren 66.7 13 0.00029 29.4 4.8 45 136-180 46-93 (116)
37 cd01218 PH_phafin2 Phafin2 Pl 66.6 58 0.0013 25.1 10.4 88 95-183 4-99 (104)
38 cd01253 PH_beta_spectrin Beta- 65.0 44 0.00095 24.8 7.3 71 110-181 23-101 (104)
39 PF10882 bPH_5: Bacterial PH d 64.8 17 0.00038 26.9 5.1 33 146-180 66-98 (100)
40 cd01274 AIDA-1b AIDA-1b Phosph 64.3 72 0.0016 25.4 8.8 76 109-184 39-121 (127)
41 PF08000 bPH_1: Bacterial PH d 59.9 16 0.00035 29.2 4.3 82 91-181 29-122 (124)
42 cd01224 PH_Collybistin Collybi 54.2 1.1E+02 0.0023 24.1 10.5 52 95-146 2-59 (109)
43 PF02893 GRAM: GRAM domain; I 53.9 46 0.001 22.9 5.4 34 114-147 33-68 (69)
44 PF04283 CheF-arch: Chemotaxis 50.4 1.5E+02 0.0033 25.9 9.2 73 108-184 23-109 (221)
45 cd01269 PLX Pollux (PLX) Phosp 49.3 73 0.0016 25.8 6.4 70 114-183 46-126 (129)
46 cd01235 PH_SETbf Set binding f 47.6 1.1E+02 0.0023 22.2 10.5 80 100-180 4-96 (101)
47 cd01265 PH_PARIS-1 PARIS-1 ple 46.7 1.2E+02 0.0025 22.5 8.1 78 100-179 4-88 (95)
48 PF14844 PH_BEACH: PH domain a 46.4 47 0.001 24.9 4.8 75 94-169 1-93 (106)
49 cd01266 PH_Gab Gab (Grb2-assoc 46.4 1.3E+02 0.0027 22.7 8.6 72 109-181 18-104 (108)
50 PRK10215 hypothetical protein; 45.4 1E+02 0.0022 27.2 7.2 57 140-202 46-105 (218)
51 cd01227 PH_Dbs Dbs (DBL's big 45.1 1.7E+02 0.0036 23.7 8.3 61 107-168 26-98 (133)
52 PF15087 DUF4551: Protein of u 44.7 47 0.001 33.5 5.6 61 93-153 29-89 (617)
53 cd01247 PH_GPBP Goodpasture an 42.7 1.4E+02 0.003 22.1 8.7 79 101-180 5-87 (91)
54 cd01250 PH_centaurin Centaurin 41.5 1.2E+02 0.0027 21.2 8.5 71 109-181 15-91 (94)
55 PF12814 Mcp5_PH: Meiotic cell 39.9 1.8E+02 0.0039 22.7 8.0 81 99-179 13-115 (123)
56 PF10640 Pox_ATPase-GT: mRNA c 39.9 42 0.00091 31.0 4.1 70 129-204 49-145 (313)
57 cd01222 PH_clg Clg (common-sit 39.7 1.7E+02 0.0036 22.3 8.4 60 110-170 16-80 (97)
58 cd01255 PH_TIAM TIAM Pleckstri 39.4 1.7E+02 0.0036 24.5 7.1 86 96-183 55-155 (160)
59 KOG0592 3-phosphoinositide-dep 35.6 51 0.0011 33.0 4.2 48 112-161 467-515 (604)
60 PF14779 BBS1: Ciliary BBSome 34.5 3.5E+02 0.0075 24.4 9.4 76 73-149 152-235 (257)
61 PF02174 IRS: PTB domain (IRS- 34.1 2E+02 0.0044 21.6 10.8 72 109-183 20-96 (100)
62 cd01215 Dab Disabled (Dab) Pho 30.6 3E+02 0.0066 22.5 7.4 75 109-183 51-130 (139)
63 cd01201 Neurobeachin Neurobeac 28.0 58 0.0012 25.6 2.6 33 93-126 1-33 (108)
64 PF09625 VP9: VP9 protein; In 27.4 98 0.0021 23.0 3.5 30 137-166 23-52 (79)
65 PF08378 NERD: Nuclease-relate 25.2 2.8E+02 0.006 20.4 6.0 38 94-131 22-59 (115)
66 PF03703 bPH_2: Bacterial PH d 25.0 1.4E+02 0.0031 20.4 4.1 34 115-148 6-39 (80)
67 PF14472 DUF4429: Domain of un 24.0 97 0.0021 23.2 3.2 28 133-160 26-56 (94)
68 cd01236 PH_outspread Outspread 22.7 3.6E+02 0.0077 20.7 8.6 70 110-180 24-99 (104)
69 cd01231 PH_Lnk LNK-family Plec 22.3 2E+02 0.0042 22.6 4.5 55 127-181 45-104 (107)
70 KOG0930 Guanine nucleotide exc 20.6 70 0.0015 29.7 2.0 42 101-142 266-310 (395)
No 1
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=100.00 E-value=4.8e-48 Score=330.18 Aligned_cols=180 Identities=41% Similarity=0.638 Sum_probs=168.9
Q ss_pred chhhhhhhccccccccccCCcCcccCccCCCCchHHHHHHhhcC-CccEEEeeeEEEeCCCCceeeeEEEEecCeEEEe-
Q 027012 48 VTEDQEPFMGIKVRRKASLHRDYKGDYLDVASHPYLMKILQKQG-DKQVLFADKILKFTGSGKMKRRILLITDFAIYLV- 125 (229)
Q Consensus 48 ~~~a~~~f~gkK~Rrr~Sl~R~f~GDYL~~~~~~~~~~l~~k~~-~e~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~l- 125 (229)
+.+|+++|+|+|+||+.|+.|+|.||||++.+++.+++++.+.+ +++|+||+.|.|+||++|+++|+||||++|||+|
T Consensus 2 K~~a~~if~gkK~r~~~S~~r~f~gDyL~~~~~~~~~~~~~~~~~~e~vlFs~~v~K~nr~~K~~~R~livT~~~iY~l~ 81 (199)
T PF06017_consen 2 KVAASDIFKGKKERRRSSVNRPFQGDYLGLNNNPKLQKILEKNEGDEKVLFSDRVQKYNRRNKPQPRILIVTDKAIYLLD 81 (199)
T ss_pred HHHHHHHHhccccccccccCccccccccCccccccHHHHHHhccCCcceEEEEEEEEecCCCCccceEEEEeCCeEEEEE
Confidence 35799999999999999999999999999999999999999886 8999999999999999999999999999999999
Q ss_pred -----cCCcceeEEEeeccccceEEEeccCCcEEEEEeCCCCCeeeecCcHHHHHHHHHHHHhccCC-CeeEEEcccEEE
Q 027012 126 -----DPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEATKGASE-ELEVAFSNSFEY 199 (229)
Q Consensus 126 -----d~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~~~~~~~~-~L~V~~~d~i~y 199 (229)
++..+++|++|||++|++||||+++|+||||||+++||++|+|++++||+++|+++|++.++ +|+|+|+++|+|
T Consensus 82 ~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~D~il~~~~k~Elv~~L~~~~~~~~~~~l~v~~~~~i~~ 161 (199)
T PF06017_consen 82 QRKVKDPKKYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEGDLILESDFKTELVTILCKAYKKATGKKLPVNFSDSIQY 161 (199)
T ss_pred EeecCCceeeEEEeccCcccccEEEEccCCCCEEEEEECCCCCEEEEeCcHHHHHHHHHHHHHHHhCCceeEEEeceEEE
Confidence 56679999999999999999999999999999999999999999999999999999999988 999999999999
Q ss_pred EEcCCceEEEEEEEeCCCccceeeeecc
Q 027012 200 HAAAELVKEVVFEEVEGGIKTRILTKSE 227 (229)
Q Consensus 200 ~~~~gk~~~V~F~~~~~~~~~~~~~k~~ 227 (229)
+.++|+.++|.|..++.+.....+.|++
T Consensus 162 ~~~~~k~~~i~f~~~~~~~~~~~~~k~~ 189 (199)
T PF06017_consen 162 KLKKGKTKTIKFSKDESPKVQPPIKKKK 189 (199)
T ss_pred EEcCCceEEEEEEECCCCCCccceeecC
Confidence 9999999999999998887744454443
No 2
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.97 E-value=3.5e-31 Score=256.23 Aligned_cols=171 Identities=31% Similarity=0.525 Sum_probs=159.8
Q ss_pred CcCcccchhhhhhhccccccccccCCcCcccCccCCCCchHHHHHHhhcCCccEEEeeeEEEeCCCCceeeeEEEEecCe
Q 027012 42 RPSENNVTEDQEPFMGIKVRRKASLHRDYKGDYLDVASHPYLMKILQKQGDKQVLFADKILKFTGSGKMKRRILLITDFA 121 (229)
Q Consensus 42 ~~~~~~~~~a~~~f~gkK~Rrr~Sl~R~f~GDYL~~~~~~~~~~l~~k~~~e~VlFS~~V~Kinr~gK~~~R~LiITd~a 121 (229)
|.|++...+|.+++.|+|+|||.|+.|.|.||||++.+.|.++..+++. ++|+||+.|.||+|+.|+.+|.||||.++
T Consensus 713 rky~k~ree~t~ll~gKKeRRr~Si~R~F~GDYl~~~e~~~l~~~vgkk--ekV~Fa~~~tK~~R~~k~~kr~llLT~k~ 790 (1106)
T KOG0162|consen 713 RKYEKMREEATKLLLGKKERRRYSINRNFVGDYLGLEEHPTLQQFVGKK--EKVIFADTVTKYDRRFKPLKRDLLLTPKC 790 (1106)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhccccCCchhhhhhccc--ceEEEEeeecccccccccccceEEeccce
Confidence 5688889999999999999999999999999999999999988888864 99999999999999999999999999999
Q ss_pred EEEecCC-----------cceeEEEeeccccceEEEeccCCcEEEEEe-CCCCCeeeecCcHHHHHHHHHHHHhccCC-C
Q 027012 122 IYLVDPE-----------TDALKRRIALAAVEKMCLSELSDNFFAIII-PSEYDLLMASTRKTEIVTVLVEATKGASE-E 188 (229)
Q Consensus 122 iY~ld~~-----------~~klKrrIpL~~I~gVSvS~~~D~~~VIhv-~~e~D~ll~s~~ktElvt~L~~~~~~~~~-~ 188 (229)
+|+|... ++.++++|++..|.+||+|+++|+||+|+. .+++|.+|.|.+||||+|.|++.|...++ +
T Consensus 791 lylig~~kvk~gpekg~~~e~~~~kidv~~I~sVsLs~~QDD~~~l~~~~~~~d~ll~t~FKTEf~t~L~k~~~e~~n~~ 870 (1106)
T KOG0162|consen 791 LYLIGREKVKNGPEKGKVTEVLKRKIDVPQIKSVSLSNLQDDWVILYLGNDQYDSLLETPFKTEFITLLKKRYEERTNRK 870 (1106)
T ss_pred EEEEeehhhhcCccccchhhhhhhccchhhhceeccccccccEEEEEecCCCcchHhhhhhHHHHHHHHHHHHHHhhcCc
Confidence 9999653 267899999999999999999999999998 46799999999999999999999999988 9
Q ss_pred eeEEEcccEEEEEcCCceE-----EEEEEEe
Q 027012 189 LEVAFSNSFEYHAAAELVK-----EVVFEEV 214 (229)
Q Consensus 189 L~V~~~d~i~y~~~~gk~~-----~V~F~~~ 214 (229)
|++.|+++|+|+.++|+.. +|+|..+
T Consensus 871 l~l~~~~tie~~~K~~k~~~~~~rtV~~~~~ 901 (1106)
T KOG0162|consen 871 LQLKFGSTIEYSKKKGKWGFGDKRTVQFGID 901 (1106)
T ss_pred eeEEeccceEEEecccccCCCcceeEEeccC
Confidence 9999999999999987766 9999887
No 3
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.96 E-value=3e-29 Score=242.53 Aligned_cols=178 Identities=23% Similarity=0.337 Sum_probs=155.7
Q ss_pred cchhhhhhhccccccccccCCcCcccCccCCCCch---------HHHHHHhhcCCccEEEeeeEEEeCCCCceeeeEEEE
Q 027012 47 NVTEDQEPFMGIKVRRKASLHRDYKGDYLDVASHP---------YLMKILQKQGDKQVLFADKILKFTGSGKMKRRILLI 117 (229)
Q Consensus 47 ~~~~a~~~f~gkK~Rrr~Sl~R~f~GDYL~~~~~~---------~~~~l~~k~~~e~VlFS~~V~Kinr~gK~~~R~LiI 117 (229)
.+.+|+++|+|+| ..|+..|.|.||||+...++ .++.+.+..+...|+||++|.|+||.+|++.|+|++
T Consensus 799 ~Ki~A~e~lkGkk--~~~gqsr~w~gdyL~~~~~~p~~~~~~~~~~~~l~~~e~fg~Vlfs~~V~K~NrfnK~~~R~lll 876 (1001)
T KOG0164|consen 799 QKIAASEALKGKK--ANWGQSRAWIGDYLGSQEENPGYSATFKNRLQQLKGSETFGPVLFSSHVKKVNRFNKPRSRALLL 876 (1001)
T ss_pred HHHHHHHHhcCCc--ccccccchhhhhhcccCCCCCCcchhhHHHHHHhhccCCccceeehhhHHHhcccCCccceeEEe
Confidence 3568999999998 77888999999999988764 456666666678999999999999999999999999
Q ss_pred ecCeEEEecCCccee-EEEeeccccceEEEeccCCcEEEEEeCCCCCeeee------cCcHHHHHHHHHHHHhccCCCee
Q 027012 118 TDFAIYLVDPETDAL-KRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMA------STRKTEIVTVLVEATKGASEELE 190 (229)
Q Consensus 118 Td~aiY~ld~~~~kl-KrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D~ll~------s~~ktElvt~L~~~~~~~~~~L~ 190 (229)
||.++|++|+++.++ |+.|||.+|+|||||+++|++||+|+....|++.+ .+|++|++++|+.+|......|+
T Consensus 877 Td~~v~kld~~K~k~mK~~I~l~nltgiSVss~~D~LfvlH~~~~~Dlv~~~~~~~~e~rVgElvg~l~~~~~~~~r~l~ 956 (1001)
T KOG0164|consen 877 TDRHVYKLDPKKQKVMKQTIPLANLTGISVSSGSDQLFVLHVSDNKDLVVCLDSVLQEDRVGELVGKLAAHYNDEGRSLN 956 (1001)
T ss_pred ecCeEEEecchHhhHhhcccchhhccceeeecCCCceEEEEecCCcchhhhhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 999999999988665 77999999999999999999999999876677764 48999999999999999833999
Q ss_pred EEEcccEEEEEcCCceEEEEEEEeCCCccceeeeeccC
Q 027012 191 VAFSNSFEYHAAAELVKEVVFEEVEGGIKTRILTKSES 228 (229)
Q Consensus 191 V~~~d~i~y~~~~gk~~~V~F~~~~~~~~~~~~~k~~~ 228 (229)
|++++.+.++.. |+.++|+|+. .++...|++.|+++
T Consensus 957 V~vt~~~~~~~~-gk~~tI~v~~-a~~~~~p~~~~k~G 992 (1001)
T KOG0164|consen 957 VNVTSIISCRLP-GKDRTISVEP-AGNQEVPDFRKKNG 992 (1001)
T ss_pred EEecceeEeecC-CcceEEEEEe-CCCCCCCceeccCC
Confidence 999999999998 8889999997 56666777777765
No 4
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.43 E-value=0.0013 Score=51.27 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=54.8
Q ss_pred CccEEEeeeEEEeCCCCceeeeEEEEecC-eEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCCCCeeeec
Q 027012 92 DKQVLFADKILKFTGSGKMKRRILLITDF-AIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMAS 168 (229)
Q Consensus 92 ~e~VlFS~~V~Kinr~gK~~~R~LiITd~-aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D~ll~s 168 (229)
+|.|+....|.|-..- -...|.||+|+. .||-+|+.+..+|-.||++. .+++...+..-|.||+|. -.|.|..
T Consensus 10 ge~Il~~g~v~K~kgl-~~kkR~liLTd~PrL~Yvdp~~~~~KGeI~~~~--~l~v~~k~~~~F~I~tp~-RtY~l~d 83 (104)
T PF14593_consen 10 GELILKQGYVKKRKGL-FAKKRQLILTDGPRLFYVDPKKMVLKGEIPWSK--ELSVEVKSFKTFFIHTPK-RTYYLED 83 (104)
T ss_dssp T--EEEEEEEEEEETT-EEEEEEEEEETTTEEEEEETTTTEEEEEE--ST--T-EEEECSSSEEEEEETT-EEEEEE-
T ss_pred CCeEEEEEEEEEeece-EEEEEEEEEccCCEEEEEECCCCeECcEEecCC--ceEEEEccCCEEEEECCC-cEEEEEC
Confidence 6899999999998443 378999999999 99999999999999999994 455555666678899995 5666653
No 5
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.81 E-value=0.009 Score=45.35 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=52.1
Q ss_pred EEeeeEEEeCCCCceeeeEEEEecC-eEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCCCCeeee
Q 027012 96 LFADKILKFTGSGKMKRRILLITDF-AIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMA 167 (229)
Q Consensus 96 lFS~~V~Kinr~gK~~~R~LiITd~-aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D~ll~ 167 (229)
++...|.|...- =..+|.|||||. .++.+|+.+..+|-.||++.+ ++++-..+..-|.||.|+ -.+.|+
T Consensus 2 l~~g~v~Kr~gl-f~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~-~l~v~~~~~~~F~I~Tp~-rty~le 71 (89)
T cd01262 2 LKIGAVKKRKGL-FAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDV-ELRVEVKNSSHFFVHTPN-KVYSFE 71 (89)
T ss_pred ceeeeeeehhcc-ccceeeEEEecCceEEEEcCCcCeEEeEeccccc-ceEEEEecCccEEEECCC-ceEEEE
Confidence 445555554442 348899999998 899999999999999999994 566666666667889987 456654
No 6
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=96.33 E-value=0.019 Score=45.26 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=46.2
Q ss_pred CccEEEeeeEEEeCCCC---ceeeeEEEEecCeEEEec--CCccee--EEEeeccccceEEEecc
Q 027012 92 DKQVLFADKILKFTGSG---KMKRRILLITDFAIYLVD--PETDAL--KRRIALAAVEKMCLSEL 149 (229)
Q Consensus 92 ~e~VlFS~~V~Kinr~g---K~~~R~LiITd~aiY~ld--~~~~kl--KrrIpL~~I~gVSvS~~ 149 (229)
+|.++=+=.+..+|..+ ..++|+||||++|+|++. -...++ =+||||.+|.+|.+=++
T Consensus 28 ~e~~i~gW~L~~~~~~~~~~~e~E~vlLLTd~alyi~~YD~~~~kv~~~~ri~L~~I~~I~~G~~ 92 (115)
T PF12456_consen 28 DEEFIGGWLLTEPDHWNKTENEEERVLLLTDKALYICKYDFIMEKVSQFQRIPLNDIDKIQIGTF 92 (115)
T ss_pred CCcEEEEEEEEecCcccCCCcccceEEEEecCEEEEEEecCCCccEEEEEEEecccCcEEEEecc
Confidence 67777777788999988 999999999999999983 222333 57799999999987543
No 7
>PF14470 bPH_3: Bacterial PH domain
Probab=95.65 E-value=0.33 Score=35.62 Aligned_cols=81 Identities=7% Similarity=0.069 Sum_probs=57.2
Q ss_pred CCccEEEeeeEEEeCCCCceeeeEEEEecCeEEEecCCcc--eeEEEeeccccceEEEec-cCCcEEEEEeCCCCCeeee
Q 027012 91 GDKQVLFADKILKFTGSGKMKRRILLITDFAIYLVDPETD--ALKRRIALAAVEKMCLSE-LSDNFFAIIIPSEYDLLMA 167 (229)
Q Consensus 91 ~~e~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~ld~~~~--klKrrIpL~~I~gVSvS~-~~D~~~VIhv~~e~D~ll~ 167 (229)
.+|.|+|.... .++..+...+-++++||+.|+.+...-+ .....+|+.+|++|++.. .-.+-+.|+. ++..+-+.
T Consensus 3 ~~E~I~~~~~~-~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~-~~~~~~i~ 80 (96)
T PF14470_consen 3 EDEEIEYVAVG-SYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET-NGEKIKID 80 (96)
T ss_pred CCCEEEEEEEE-EEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE-CCEEEEEE
Confidence 46888887765 4444467788899999999999987522 446779999999999985 3335577787 44455555
Q ss_pred cCcHHH
Q 027012 168 STRKTE 173 (229)
Q Consensus 168 s~~ktE 173 (229)
+-.+.+
T Consensus 81 ~i~k~~ 86 (96)
T PF14470_consen 81 NIQKGD 86 (96)
T ss_pred EcCHHH
Confidence 434433
No 8
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=95.15 E-value=0.69 Score=32.26 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=63.1
Q ss_pred EEeeeEEEeCC--CCceeeeEEEEecCeEEEecCCc----ceeEEEeeccccceEEEeccC-----CcEEEEEeCCCCCe
Q 027012 96 LFADKILKFTG--SGKMKRRILLITDFAIYLVDPET----DALKRRIALAAVEKMCLSELS-----DNFFAIIIPSEYDL 164 (229)
Q Consensus 96 lFS~~V~Kinr--~gK~~~R~LiITd~aiY~ld~~~----~klKrrIpL~~I~gVSvS~~~-----D~~~VIhv~~e~D~ 164 (229)
++...+.+... .+..++|.++|++..++...... ......|+|.++ .|+..... ++.|.|..++..-+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~ 80 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSY 80 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceE
Confidence 34566667665 67899999999999998887643 466788999998 77766553 55667776654488
Q ss_pred eeecCcHHHHHHHHHHH
Q 027012 165 LMASTRKTEIVTVLVEA 181 (229)
Q Consensus 165 ll~s~~ktElvt~L~~~ 181 (229)
+|.++...|...++...
T Consensus 81 ~f~~~s~~~~~~W~~~i 97 (102)
T smart00233 81 LLQAESEEEREEWVDAL 97 (102)
T ss_pred EEEcCCHHHHHHHHHHH
Confidence 89898877877766654
No 9
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=95.12 E-value=0.8 Score=32.71 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=64.1
Q ss_pred EEeeeEEEeC-CCCceeeeEEEEecCeEEEecCCc----ceeEEEeeccccceEEEecc--------CCcEEEEEeCCCC
Q 027012 96 LFADKILKFT-GSGKMKRRILLITDFAIYLVDPET----DALKRRIALAAVEKMCLSEL--------SDNFFAIIIPSEY 162 (229)
Q Consensus 96 lFS~~V~Kin-r~gK~~~R~LiITd~aiY~ld~~~----~klKrrIpL~~I~gVSvS~~--------~D~~~VIhv~~e~ 162 (229)
.-+..+.|.. ...+-++|.++|++..|+...... ...+..|+|.++ .|..... ..+.|.|+.++..
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~ 80 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGK 80 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSE
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCc
Confidence 3455566666 467889999999999999997654 567888999999 5555333 4468888888766
Q ss_pred CeeeecCcHHHHHHHHHHH
Q 027012 163 DLLMASTRKTEIVTVLVEA 181 (229)
Q Consensus 163 D~ll~s~~ktElvt~L~~~ 181 (229)
-++|.++...|.-.++...
T Consensus 81 ~~~~~~~s~~~~~~W~~~i 99 (104)
T PF00169_consen 81 SYLFSAESEEERKRWIQAI 99 (104)
T ss_dssp EEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHH
Confidence 8999998888877766554
No 10
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=94.33 E-value=0.78 Score=31.99 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=52.5
Q ss_pred CceeeeEEEEecCeEEEecCCcceeE--EEeeccccceEEEecc---CCcEEEEEeCC--CCCeeeecCcHHHHHHHHH
Q 027012 108 GKMKRRILLITDFAIYLVDPETDALK--RRIALAAVEKMCLSEL---SDNFFAIIIPS--EYDLLMASTRKTEIVTVLV 179 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~~klK--rrIpL~~I~gVSvS~~---~D~~~VIhv~~--e~D~ll~s~~ktElvt~L~ 179 (229)
+.-++|.++|++..|+..+...-+.. ..+++..+. |+..+. .++.|.|.... ...+.|.++...|.-.++.
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~ 94 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVE 94 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHH
Confidence 67899999999999999987654443 368999888 777654 45777787764 6788898877655554443
No 11
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=91.63 E-value=1 Score=38.77 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=51.5
Q ss_pred eeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCc------EEEEEeCCC----CCeee-ecCcH---HHHHH
Q 027012 111 KRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDN------FFAIIIPSE----YDLLM-ASTRK---TEIVT 176 (229)
Q Consensus 111 ~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~------~~VIhv~~e----~D~ll-~s~~k---tElvt 176 (229)
.+.+|-||...|=+.+...+.+..|+||..|. .+..+.|+ +|++.+.++ |++.+ +|... .|++.
T Consensus 108 eevil~VSKyGiKvt~~d~~~VL~RhpL~~Iv--r~V~YdDGlG~g~~llAlK~~~~~~e~y~l~v~Qcss~~qA~~ICk 185 (200)
T PF10480_consen 108 EEVILSVSKYGIKVTDNDQRDVLHRHPLHEIV--RMVCYDDGLGAGKNLLALKVGDERQEEYQLWVYQCSSDEQAQEICK 185 (200)
T ss_pred CeEEEEEeeccEEEeecCCcceeeeeeeeeEE--EEEEEecCcCCcceEEEEEccCCCcceEEEEEEEcCCHHHHHHHHH
Confidence 67888899999999998889999999999995 33445555 577788654 55544 66443 55666
Q ss_pred HHHHHHh
Q 027012 177 VLVEATK 183 (229)
Q Consensus 177 ~L~~~~~ 183 (229)
.|..++.
T Consensus 186 ~l~~aF~ 192 (200)
T PF10480_consen 186 VLGQAFD 192 (200)
T ss_pred HHHHHHH
Confidence 6666665
No 12
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=91.56 E-value=2 Score=32.65 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=59.5
Q ss_pred CceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCCC-----CeeeecCcH-HHHHHHHHHH
Q 027012 108 GKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSEY-----DLLMASTRK-TEIVTVLVEA 181 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~-----D~ll~s~~k-tElvt~L~~~ 181 (229)
.+.++-.|-||...|-++++.+..+-...|+..|+-.++-+...++|.+-+.... -.+|.|... .+++..|..+
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~a~~i~~~l~~a 118 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKVAEPIALTLGQA 118 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCchHHHHHHHHHHH
Confidence 4667788899999999999987777777899999888887766778887775433 445567666 7788888888
Q ss_pred Hhc
Q 027012 182 TKG 184 (229)
Q Consensus 182 ~~~ 184 (229)
++.
T Consensus 119 f~~ 121 (123)
T cd00934 119 FQV 121 (123)
T ss_pred HHH
Confidence 763
No 13
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.37 E-value=2.3 Score=29.25 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=54.7
Q ss_pred CceeeeEEEEecCeEEEecCCc----ceeEEEeeccccceEEEeccC---CcEEEEEeCCCCCeeeecCcHHHHHHHHHH
Q 027012 108 GKMKRRILLITDFAIYLVDPET----DALKRRIALAAVEKMCLSELS---DNFFAIIIPSEYDLLMASTRKTEIVTVLVE 180 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~----~klKrrIpL~~I~gVSvS~~~---D~~~VIhv~~e~D~ll~s~~ktElvt~L~~ 180 (229)
+.-++|.++|++..++..+... ......|+|.+ ..|...+.. ...|.|...+...+.|.++...|....+..
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~ 92 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEA 92 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHH
Confidence 5678999999999998887643 46778899999 566666554 456777766657888888888887776654
Q ss_pred H
Q 027012 181 A 181 (229)
Q Consensus 181 ~ 181 (229)
.
T Consensus 93 l 93 (96)
T cd00821 93 L 93 (96)
T ss_pred H
Confidence 3
No 14
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=91.14 E-value=2.5 Score=33.00 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=58.2
Q ss_pred CceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEE-eccCCcEEEEEeCCCC-----CeeeecC-cHHHHHHHHHH
Q 027012 108 GKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCL-SELSDNFFAIIIPSEY-----DLLMAST-RKTEIVTVLVE 180 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSv-S~~~D~~~VIhv~~e~-----D~ll~s~-~ktElvt~L~~ 180 (229)
.+.++-.|.||...|-++++.+-.+-...||..|+-.+. .+....+|......+. -.+|.|. .-.||+..|.+
T Consensus 49 ~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~~A~~i~~~i~~ 128 (140)
T PF00640_consen 49 KKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCEDQAQEICQAIGQ 128 (140)
T ss_dssp STSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESSCHHHHHHHHHH
T ss_pred ccCeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhhHHHHHHHHHHH
Confidence 456777888999999999998888888999999999999 5555567777553322 2455554 46888888888
Q ss_pred HHhc
Q 027012 181 ATKG 184 (229)
Q Consensus 181 ~~~~ 184 (229)
++..
T Consensus 129 aF~~ 132 (140)
T PF00640_consen 129 AFEL 132 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 15
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.66 E-value=4.7 Score=31.88 Aligned_cols=87 Identities=14% Similarity=0.237 Sum_probs=62.4
Q ss_pred ccEEEeeeEEEeCCCC-ceeeeEEEEecCeEEEecC----CcceeEEEeeccccceEEEeccCC-----cEEEEEeCCCC
Q 027012 93 KQVLFADKILKFTGSG-KMKRRILLITDFAIYLVDP----ETDALKRRIALAAVEKMCLSELSD-----NFFAIIIPSEY 162 (229)
Q Consensus 93 e~VlFS~~V~Kinr~g-K~~~R~LiITd~aiY~ld~----~~~klKrrIpL~~I~gVSvS~~~D-----~~~VIhv~~e~ 162 (229)
+.|++++.|.=-|-.+ -..+|.|++=...++.+.. ..|..+.++||+.| ++.++.| +-|-|-=+.-.
T Consensus 10 G~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i---~v~~lEd~e~~~~aFeI~G~li~ 86 (111)
T cd01225 10 GNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGI---IVTRLEDTEALKNAFEISGPLIE 86 (111)
T ss_pred CceEEEEEEEEecCCccccceeEEEEcCceEEEEEcCCCccceEEeeeeccccc---EEechHhccCccceEEEeccCcC
Confidence 6788998887766643 6789999999999999976 24888999998866 4444433 23333223235
Q ss_pred CeeeecCcHHHHHHHHHHHH
Q 027012 163 DLLMASTRKTEIVTVLVEAT 182 (229)
Q Consensus 163 D~ll~s~~ktElvt~L~~~~ 182 (229)
-+++.|.+..|+-.+|...-
T Consensus 87 ~i~v~C~~~~e~~~Wl~hL~ 106 (111)
T cd01225 87 RIVVVCNNPQDAQEWVELLN 106 (111)
T ss_pred cEEEEeCCHHHHHHHHHHHH
Confidence 67778999999988876653
No 16
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.05 E-value=2.7 Score=32.13 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=50.3
Q ss_pred eeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEec---cC-CcEEEEEeCCCCCeeeecCcHHHHHHHHHH
Q 027012 110 MKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSE---LS-DNFFAIIIPSEYDLLMASTRKTEIVTVLVE 180 (229)
Q Consensus 110 ~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~---~~-D~~~VIhv~~e~D~ll~s~~ktElvt~L~~ 180 (229)
-..|.++||+..|+-.+...-..+-.|||+.|.+|..-. .. .+.|-|..| +.-+.|.|+.-.|.-.+|..
T Consensus 21 ~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~-~r~~yi~a~s~~E~~~Wi~a 94 (98)
T cd01244 21 FKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCE-DDTMQLQFEAPVEATDWLNA 94 (98)
T ss_pred CceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEEeC-CCeEEEECCCHHHHHHHHHH
Confidence 368999999999977776567788899999999986422 11 233444334 46788889888887766654
No 17
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=86.81 E-value=8.4 Score=29.80 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=58.0
Q ss_pred CceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCCCC-----eeeecCcH-HHHHHHHHHH
Q 027012 108 GKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYD-----LLMASTRK-TEIVTVLVEA 181 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D-----~ll~s~~k-tElvt~L~~~ 181 (229)
.+.++-.|.||...|-+++..+-.+-...|+..|+-.+.-+...++|.+-...+.+ .+|.|+.. .|++..|.++
T Consensus 41 ~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~a~~i~~~i~~a 120 (134)
T smart00462 41 KEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKAAEDIALAIGQA 120 (134)
T ss_pred CCCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCchHHHHHHHHHHH
Confidence 45677788899999999998777777789999999998877666777777755443 34455443 5788888888
Q ss_pred Hhc
Q 027012 182 TKG 184 (229)
Q Consensus 182 ~~~ 184 (229)
++.
T Consensus 121 F~~ 123 (134)
T smart00462 121 FQL 123 (134)
T ss_pred HHH
Confidence 774
No 18
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=86.59 E-value=8.2 Score=28.39 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=48.2
Q ss_pred ceeeeEEEEecCeEEEecCCc-ceeEEEeeccccceEEEecc-CCcEEEEEeCCCCCeeeecCcHHHHHHHHHHH
Q 027012 109 KMKRRILLITDFAIYLVDPET-DALKRRIALAAVEKMCLSEL-SDNFFAIIIPSEYDLLMASTRKTEIVTVLVEA 181 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~-~klKrrIpL~~I~gVSvS~~-~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~~ 181 (229)
.=++|.++|++..||...... -+.+..|||+..+-...... ..+.|-|-.|+..-++|.++...|+-..+...
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai 93 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHL 93 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHH
Confidence 457999999999999996544 56778899998633333222 22333343344367888888888877666543
No 19
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=85.59 E-value=7.9 Score=30.69 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=56.2
Q ss_pred ceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCC-----CCeeeecCcH---HHHHHHHHH
Q 027012 109 KMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSE-----YDLLMASTRK---TEIVTVLVE 180 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e-----~D~ll~s~~k---tElvt~L~~ 180 (229)
|.++-.|.|+...|.++|+++-.+-...||..|+-.+.-+....+|..-..+. +-.+|.|+.. .|++..|.+
T Consensus 43 k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~tig~ 122 (132)
T cd01267 43 KIPKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTIGQ 122 (132)
T ss_pred CCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHHHH
Confidence 56677788999999999998888888889999988887655556666655432 2446667654 678888888
Q ss_pred HHhc
Q 027012 181 ATKG 184 (229)
Q Consensus 181 ~~~~ 184 (229)
+++.
T Consensus 123 AF~~ 126 (132)
T cd01267 123 AFEL 126 (132)
T ss_pred HHHH
Confidence 8763
No 20
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=84.58 E-value=16 Score=28.00 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=58.6
Q ss_pred EEEeeeEEEeCCCCceeeeEEEEecC------eEEEecCCc------ceeEEEeeccccceEEEecc--CCcEEEEEeCC
Q 027012 95 VLFADKILKFTGSGKMKRRILLITDF------AIYLVDPET------DALKRRIALAAVEKMCLSEL--SDNFFAIIIPS 160 (229)
Q Consensus 95 VlFS~~V~Kinr~gK~~~R~LiITd~------aiY~ld~~~------~klKrrIpL~~I~gVSvS~~--~D~~~VIhv~~ 160 (229)
|+.+..+.|- ...+.|.+||+.. .|+-.+..+ -.-++-|+|..+..|.-.+. ..+.|.|..|+
T Consensus 2 v~k~GyL~K~---K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d 78 (101)
T cd01257 2 VRKSGYLRKQ---KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD 78 (101)
T ss_pred ccEEEEEeEe---cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCC
Confidence 5677777775 5567799999987 577776543 34578899999988875422 23567777665
Q ss_pred CCCeeeecCcHHHHHHHHHHH
Q 027012 161 EYDLLMASTRKTEIVTVLVEA 181 (229)
Q Consensus 161 e~D~ll~s~~ktElvt~L~~~ 181 (229)
.-+.|.++.-.|.=.++...
T Consensus 79 -r~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 79 -EYFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred -ceEEEEeCCHHHHHHHHHHH
Confidence 68888888877776665543
No 21
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=79.28 E-value=24 Score=26.42 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=56.0
Q ss_pred EEEeeeEEEeCCCC-ceeeeEEEEecCeEEEecCCc-ceeEEEeeccccceEEEecc------CCcEEEEEeCCCCCeee
Q 027012 95 VLFADKILKFTGSG-KMKRRILLITDFAIYLVDPET-DALKRRIALAAVEKMCLSEL------SDNFFAIIIPSEYDLLM 166 (229)
Q Consensus 95 VlFS~~V~Kinr~g-K~~~R~LiITd~aiY~ld~~~-~klKrrIpL~~I~gVSvS~~------~D~~~VIhv~~e~D~ll 166 (229)
|+.+....|-.... .=.+|.++|.+..|+.....+ -..+..|+|.++ .|..++. ..+.|.|..+ +.-+.|
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~~~~~~~~~~~~F~I~t~-~rt~~~ 79 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTA-RVEHSEDQAAMVKGPNTFAVCTK-HRGYLF 79 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEeccc-EEEEccchhhhcCCCcEEEEECC-CCEEEE
Confidence 44566666655543 358999999999998887644 456777999865 4444433 3456777655 456888
Q ss_pred ecCcHHHHHHHHHH
Q 027012 167 ASTRKTEIVTVLVE 180 (229)
Q Consensus 167 ~s~~ktElvt~L~~ 180 (229)
+++.-.|.-..+..
T Consensus 80 ~A~s~~e~~~Wi~a 93 (100)
T cd01233 80 QALSDKEMIDWLYA 93 (100)
T ss_pred EcCCHHHHHHHHHH
Confidence 88777776655543
No 22
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=77.43 E-value=25 Score=26.48 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=38.0
Q ss_pred cceeEEEeeccccceEEEeccC--CcEEEEEeCCCCCeeeec---CcHHHHHHHHHHHHh
Q 027012 129 TDALKRRIALAAVEKMCLSELS--DNFFAIIIPSEYDLLMAS---TRKTEIVTVLVEATK 183 (229)
Q Consensus 129 ~~klKrrIpL~~I~gVSvS~~~--D~~~VIhv~~e~D~ll~s---~~ktElvt~L~~~~~ 183 (229)
.|++.+.-+|.++..|...+.. +.-|.||+.. .|...+ ..+..|+..|.++|+
T Consensus 32 ~f~i~ktW~L~eL~~I~~~~~~~~~~~F~l~~~k--~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 32 SFQIGKTWDLDELKAIDGINPDKDTPEFDLTFDK--PYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp -EEEEEEEEGGG--EEEE-SSS--TTEEEEESSS--EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cEEEeeEEehhhceeeeeecCCCCCcCEEEEECC--CcEEEeCCHHHHHHHHHHHHHHhc
Confidence 4999999999999999987655 4578999943 555543 456679999988876
No 23
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.30 E-value=35 Score=26.76 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=50.4
Q ss_pred cEEEeeeEEEeCC-CCceeeeEEEEecCeEEEecC--C----------cceeEEEeeccccceEEEec---cCCcEEEEE
Q 027012 94 QVLFADKILKFTG-SGKMKRRILLITDFAIYLVDP--E----------TDALKRRIALAAVEKMCLSE---LSDNFFAII 157 (229)
Q Consensus 94 ~VlFS~~V~Kinr-~gK~~~R~LiITd~aiY~ld~--~----------~~klKrrIpL~~I~gVSvS~---~~D~~~VIh 157 (229)
+.+....+.|+.. +++.++|.+.|=|..|..-.+ . .|++|-++++..+.=..+.. ..+.|. |+
T Consensus 3 elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~-I~ 81 (112)
T cd01261 3 EFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFE-II 81 (112)
T ss_pred cccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEE-EE
Confidence 3456777888886 578899999888877755443 1 58899999999875444432 234444 44
Q ss_pred eCCCCCeeeecCcHHH
Q 027012 158 IPSEYDLLMASTRKTE 173 (229)
Q Consensus 158 v~~e~D~ll~s~~ktE 173 (229)
-.++.-++|++..-.|
T Consensus 82 ~~~~~s~~l~Akt~ee 97 (112)
T cd01261 82 LKDGNSVIFSAKNAEE 97 (112)
T ss_pred cCCCCEEEEEECCHHH
Confidence 3323457776644333
No 24
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=76.12 E-value=34 Score=27.62 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=56.0
Q ss_pred CceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCC------CCeeeecCcH-HHHHHHHHH
Q 027012 108 GKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSE------YDLLMASTRK-TEIVTVLVE 180 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e------~D~ll~s~~k-tElvt~L~~ 180 (229)
.|.++-.|.||...|-++|+++-.+....||..|+-.+.-+....+|..-...+ .-++|.|... .+++..|-+
T Consensus 52 ~k~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~~~~~~ChvF~s~~~A~~I~~tigq 131 (142)
T cd01273 52 AKLQKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADDKDDKRMFSFIAKAEGASGKHSCFVFTSEKLAEDITLTIGQ 131 (142)
T ss_pred ccCcEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecCCCCCeEEEEEecCCCCCCcEEEEEEeccchHHHHHHHHHH
Confidence 466788899999999999998888888899999988887666666776666433 2345555543 456667777
Q ss_pred HHh
Q 027012 181 ATK 183 (229)
Q Consensus 181 ~~~ 183 (229)
++.
T Consensus 132 AF~ 134 (142)
T cd01273 132 AFD 134 (142)
T ss_pred HHH
Confidence 665
No 25
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=76.09 E-value=21 Score=25.55 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=39.1
Q ss_pred EecCeEEEecCCcceeEEEeeccccceEEEec--c-----CCcEEEEEeCCCCCeeeec-CcHHHHHHHHHHH
Q 027012 117 ITDFAIYLVDPETDALKRRIALAAVEKMCLSE--L-----SDNFFAIIIPSEYDLLMAS-TRKTEIVTVLVEA 181 (229)
Q Consensus 117 ITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~--~-----~D~~~VIhv~~e~D~ll~s-~~ktElvt~L~~~ 181 (229)
|++..|++--. =++.+||+.+|..|+-+. + +-+-+.|+.. .++.++.+ .++.||+..|.+.
T Consensus 5 i~~~~L~I~~G---~~~~~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~-~~~~i~IsP~~~~~FI~~L~k~ 73 (74)
T PF06713_consen 5 IEDDYLIIKCG---FFKKKIPIEDIRSIRPTKNPLSSPALSLDRLEIYYG-KYKSILISPKDKEEFIAELQKR 73 (74)
T ss_pred EeCCEEEEEEC---CcccEEEhHHccEEEecCCccccccccccEEEEEEC-CCCEEEEECCCHHHHHHHHHhh
Confidence 36666655442 235569999999998773 1 2233566665 34555555 6789999988764
No 26
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=74.65 E-value=35 Score=25.91 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=46.4
Q ss_pred eeEEEeCCCCceeeeEEEEecCeEEEe----cCCcceeEEEeeccccceEEEeccC---CcEEEEEeCCCCCeeeecCcH
Q 027012 99 DKILKFTGSGKMKRRILLITDFAIYLV----DPETDALKRRIALAAVEKMCLSELS---DNFFAIIIPSEYDLLMASTRK 171 (229)
Q Consensus 99 ~~V~Kinr~gK~~~R~LiITd~aiY~l----d~~~~klKrrIpL~~I~gVSvS~~~---D~~~VIhv~~e~D~ll~s~~k 171 (229)
...+|+-|++-..++++|.+|.=||=- +..+|++...|||..+. |.-.... -+-|.|.-+ +..+++...--
T Consensus 6 G~L~K~~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~-~ks~~l~A~s~ 83 (99)
T cd01220 6 GCLLKLSKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGG-QCAITVAASTR 83 (99)
T ss_pred EEEEEEeCCCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcC-CeEEEEECCCH
Confidence 457888887733344555588777743 22357888899998874 3322221 144555544 46788877555
Q ss_pred HHHHHHH
Q 027012 172 TEIVTVL 178 (229)
Q Consensus 172 tElvt~L 178 (229)
.|--.++
T Consensus 84 ~Ek~~Wi 90 (99)
T cd01220 84 AEKEKWL 90 (99)
T ss_pred HHHHHHH
Confidence 5544444
No 27
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.63 E-value=40 Score=26.13 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=49.2
Q ss_pred eEEEeCC-CCceeeeEEEEecCeEEEecCCc-ceeEEEeeccccceEEEec--cCCcEEEEEeCCC--------------
Q 027012 100 KILKFTG-SGKMKRRILLITDFAIYLVDPET-DALKRRIALAAVEKMCLSE--LSDNFFAIIIPSE-------------- 161 (229)
Q Consensus 100 ~V~Kinr-~gK~~~R~LiITd~aiY~ld~~~-~klKrrIpL~~I~gVSvS~--~~D~~~VIhv~~e-------------- 161 (229)
.+.|-.. .+.-++|.++|++..||.....+ -..+..|+|..+. |+... .....|-|+.+++
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~ 83 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVS-IREVEDPSKPFCFELFSPSDKQQIKACKTESDGR 83 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcE-EEEcccCCCCeeEEEECCcccccccccccccccc
Confidence 3444433 23458999999999998887543 4567889999753 44432 2333355555443
Q ss_pred ------CCeeeecCcHHHHHHHHHHHH
Q 027012 162 ------YDLLMASTRKTEIVTVLVEAT 182 (229)
Q Consensus 162 ------~D~ll~s~~ktElvt~L~~~~ 182 (229)
.-+.|+++.-.|+-.++....
T Consensus 84 ~~~~~~~~~~~~A~s~~e~~~Wi~al~ 110 (125)
T cd01252 84 VVEGNHSVYRISAANDEEMDEWIKSIK 110 (125)
T ss_pred ccccCceEEEEECCCHHHHHHHHHHHH
Confidence 234467777667665554443
No 28
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.03 E-value=39 Score=26.62 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=51.0
Q ss_pred eeeEEEEecCeEEEecCCc--------ceeEEEeeccccc-eEEEe-ccCCcEEEEEeCCCCCeeeecCcHHHHHHHHHH
Q 027012 111 KRRILLITDFAIYLVDPET--------DALKRRIALAAVE-KMCLS-ELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVE 180 (229)
Q Consensus 111 ~~R~LiITd~aiY~ld~~~--------~klKrrIpL~~I~-gVSvS-~~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~ 180 (229)
..+..+|....||+..... -.+...|+|..-. .|... +..+++|-|..+....++|++....|+..+|..
T Consensus 27 k~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~ 106 (117)
T cd01230 27 KMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIER 106 (117)
T ss_pred eEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHH
Confidence 3566888888888875542 1456667766633 44442 335568888888778999999999999888876
Q ss_pred HHh
Q 027012 181 ATK 183 (229)
Q Consensus 181 ~~~ 183 (229)
...
T Consensus 107 I~~ 109 (117)
T cd01230 107 INV 109 (117)
T ss_pred HHH
Confidence 543
No 29
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.94 E-value=30 Score=24.38 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=52.3
Q ss_pred eEEEeCC-CCceeeeEEEEecCeEEEecCCc-c--eeEEEeeccccceEEEeccCCcEEEEEeCCCCCeeeecCcHHHHH
Q 027012 100 KILKFTG-SGKMKRRILLITDFAIYLVDPET-D--ALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIV 175 (229)
Q Consensus 100 ~V~Kinr-~gK~~~R~LiITd~aiY~ld~~~-~--klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D~ll~s~~ktElv 175 (229)
.+.|... .+.-++|.++|.+..|+...... . .....|+|... .++..+...+.|.|..++..-+.|.++...|+-
T Consensus 4 ~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~-~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~ 82 (91)
T cd01246 4 WLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGA-VISEDDSDDKCFTIDTGGDKTLHLRANSEEERQ 82 (91)
T ss_pred EEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceE-EEEECCCCCcEEEEEcCCCCEEEEECCCHHHHH
Confidence 3455543 34568999999999998886543 2 56777888875 355555445556666565457777777777766
Q ss_pred HHHH
Q 027012 176 TVLV 179 (229)
Q Consensus 176 t~L~ 179 (229)
..+.
T Consensus 83 ~Wi~ 86 (91)
T cd01246 83 RWVD 86 (91)
T ss_pred HHHH
Confidence 5554
No 30
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=71.53 E-value=42 Score=25.48 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=45.4
Q ss_pred eeeeEEEEecCeEEEecCCc---ceeEEEeeccccceEEEeccC---------CcEEEEEeCCCCCeeeecCcHHHHHHH
Q 027012 110 MKRRILLITDFAIYLVDPET---DALKRRIALAAVEKMCLSELS---------DNFFAIIIPSEYDLLMASTRKTEIVTV 177 (229)
Q Consensus 110 ~~~R~LiITd~aiY~ld~~~---~klKrrIpL~~I~gVSvS~~~---------D~~~VIhv~~e~D~ll~s~~ktElvt~ 177 (229)
-+.|.++|++..|+=.+... -..+-.|||..+..+...... .+.|-|..+ +..+.+.++.-.|.-.+
T Consensus 21 wKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-~r~~yl~A~s~~er~~W 99 (106)
T cd01238 21 YKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-EGTLYVFAPTEELRKRW 99 (106)
T ss_pred ceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC-CCeEEEEcCCHHHHHHH
Confidence 36799999999997776533 356778999998877653321 334555554 34666667666666555
Q ss_pred HH
Q 027012 178 LV 179 (229)
Q Consensus 178 L~ 179 (229)
+.
T Consensus 100 I~ 101 (106)
T cd01238 100 IK 101 (106)
T ss_pred HH
Confidence 43
No 31
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=69.40 E-value=51 Score=25.52 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=55.9
Q ss_pred EEEeeeEEEeCC-CCceeeeE-EEEecCeEEEe---cCCcceeEEEeeccccceEEEec--cCCcEEEEEeCCCCCeeee
Q 027012 95 VLFADKILKFTG-SGKMKRRI-LLITDFAIYLV---DPETDALKRRIALAAVEKMCLSE--LSDNFFAIIIPSEYDLLMA 167 (229)
Q Consensus 95 VlFS~~V~Kinr-~gK~~~R~-LiITd~aiY~l---d~~~~klKrrIpL~~I~gVSvS~--~~D~~~VIhv~~e~D~ll~ 167 (229)
+++...+..+|- ..++.+|+ ++|=|-.|..- ..++|+....+||.+|.=+.+.. .--|-|.|.+++ .-.+++
T Consensus 2 ~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~-~s~i~q 80 (100)
T cd01226 2 VILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFP-ESRIYQ 80 (100)
T ss_pred EEEcCcEEEechhhCCccceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCC-ccEEEE
Confidence 567777788887 45666666 44433333222 23458888889998886666643 223556677665 456666
Q ss_pred c---CcHHHHHHHHHHHHh
Q 027012 168 S---TRKTEIVTVLVEATK 183 (229)
Q Consensus 168 s---~~ktElvt~L~~~~~ 183 (229)
| .-|.|-++.|.++.+
T Consensus 81 aes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 81 CESARIKTEWFEELEQAKR 99 (100)
T ss_pred eCCHHHHHHHHHHHHHHhc
Confidence 5 468888888888753
No 32
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=68.16 E-value=50 Score=24.95 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=45.5
Q ss_pred eeeeEEEEecCeEEEecCCc-ceeEEEeeccccc-eEEEec------cCC--cEEEEEeCCCCCeeeecCcHHHHHHHHH
Q 027012 110 MKRRILLITDFAIYLVDPET-DALKRRIALAAVE-KMCLSE------LSD--NFFAIIIPSEYDLLMASTRKTEIVTVLV 179 (229)
Q Consensus 110 ~~~R~LiITd~aiY~ld~~~-~klKrrIpL~~I~-gVSvS~------~~D--~~~VIhv~~e~D~ll~s~~ktElvt~L~ 179 (229)
-+.|.++|++..||-.+... ...+-.|+|..+. +.+|.. ..+ +.|.|+.| +--|+|.++...|.-..|.
T Consensus 16 wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ 94 (103)
T cd01251 16 FKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-ERKFLFACETEQDRREWIA 94 (103)
T ss_pred ceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-CeEEEEECCCHHHHHHHHH
Confidence 48999999999998886533 3456668988764 445521 122 25667766 5789998877666554443
No 33
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=67.87 E-value=32 Score=23.07 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=31.0
Q ss_pred EeeeEEEeCCCCceeeeEEEEecCeEEEecCC-ccee-EEEeeccccceEEE
Q 027012 97 FADKILKFTGSGKMKRRILLITDFAIYLVDPE-TDAL-KRRIALAAVEKMCL 146 (229)
Q Consensus 97 FS~~V~Kinr~gK~~~R~LiITd~aiY~ld~~-~~kl-KrrIpL~~I~gVSv 146 (229)
|.|... +..-.+-| |.||+++|+..... .... +..||+.+|..|.-
T Consensus 12 ~~C~l~---~~~~~~G~-lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 12 YSCYLS---RDGPVQGR-LYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK 59 (61)
T ss_pred EEeEEC---CCccccEE-EEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence 444444 33444555 58899999988732 2334 77899999988753
No 34
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=67.85 E-value=51 Score=26.87 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=46.4
Q ss_pred ceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCC
Q 027012 109 KMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSE 161 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e 161 (229)
|++.-+|.|+...|.++|+++-.+-.-.||..|+-.+.-+..+.+|..-..+.
T Consensus 48 k~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r~FayIakd~ 100 (138)
T cd01268 48 KPVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDRNFDRGFSYICRDG 100 (138)
T ss_pred CCCEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCCCCCcEEEEEecCC
Confidence 67888899999999999998888888899999999999888888888887654
No 35
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=67.79 E-value=50 Score=24.81 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=51.7
Q ss_pred EeeeEEEeCCC-CceeeeEEEEecCeEEEecC------CcceeEEEeeccccceEEEe--ccCCcEEEEEeCCCCCeeee
Q 027012 97 FADKILKFTGS-GKMKRRILLITDFAIYLVDP------ETDALKRRIALAAVEKMCLS--ELSDNFFAIIIPSEYDLLMA 167 (229)
Q Consensus 97 FS~~V~Kinr~-gK~~~R~LiITd~aiY~ld~------~~~klKrrIpL~~I~gVSvS--~~~D~~~VIhv~~e~D~ll~ 167 (229)
-...++|+.++ .+.++|.++|-|..+....+ ..|+++..|+|..+. |.-+ ....+-|.|..++ --+.++
T Consensus 4 keG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~-v~~~~~~~~~~~F~I~~~~-rsf~l~ 81 (101)
T cd01219 4 KEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQ-VCEGDNLERPHSFLVSGKQ-RCLELQ 81 (101)
T ss_pred cceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEE-EEeCCCCCcCceEEEecCC-cEEEEE
Confidence 34567888885 47899999998876655553 258899999998863 3322 1122345565554 566665
Q ss_pred cC---cHHHHHHHHHHH
Q 027012 168 ST---RKTEIVTVLVEA 181 (229)
Q Consensus 168 s~---~ktElvt~L~~~ 181 (229)
++ .+.|=+..|..+
T Consensus 82 A~s~eEk~~W~~ai~~~ 98 (101)
T cd01219 82 ARTQKEKNDWVQAIFSI 98 (101)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 54 344455555544
No 36
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=66.72 E-value=13 Score=29.42 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=34.5
Q ss_pred eeccccceEE---EeccCCcEEEEEeCCCCCeeeecCcHHHHHHHHHH
Q 027012 136 IALAAVEKMC---LSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVE 180 (229)
Q Consensus 136 IpL~~I~gVS---vS~~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~ 180 (229)
|-+.+|+.|+ ..-..++.++|.+.++..+++.|+..+||..+...
T Consensus 46 i~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~e 93 (116)
T cd01240 46 ITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKE 93 (116)
T ss_pred EEeehhhhcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHH
Confidence 3444566666 55578899999999999999999988888766443
No 37
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=66.57 E-value=58 Score=25.13 Aligned_cols=88 Identities=14% Similarity=0.204 Sum_probs=52.0
Q ss_pred EEEeeeEEEeCCCCceeeeEEEEecCeEEE---ecCCcceeEEEeeccccceEEEeccC--CcEEEEEeCCCCCeeeecC
Q 027012 95 VLFADKILKFTGSGKMKRRILLITDFAIYL---VDPETDALKRRIALAAVEKMCLSELS--DNFFAIIIPSEYDLLMAST 169 (229)
Q Consensus 95 VlFS~~V~Kinr~gK~~~R~LiITd~aiY~---ld~~~~klKrrIpL~~I~gVSvS~~~--D~~~VIhv~~e~D~ll~s~ 169 (229)
.+.....+|+.|++-.++.+++..|-=||= +..++|+....+||..+.=..+.... .+-|.|+.++ .-+++.++
T Consensus 4 li~eG~L~K~~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~-kSf~v~A~ 82 (104)
T cd01218 4 LVGEGVLTKMCRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPT-KSFAVYAA 82 (104)
T ss_pred EEecCcEEEeecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecCC-eEEEEEcC
Confidence 344566789997665554555556655552 23346888889999886333332211 2455676665 46666654
Q ss_pred ---cHHHHHHHHHHHHh
Q 027012 170 ---RKTEIVTVLVEATK 183 (229)
Q Consensus 170 ---~ktElvt~L~~~~~ 183 (229)
-|.|=+..|.++..
T Consensus 83 s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 83 TETEKREWMLHINKCVT 99 (104)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45666666666654
No 38
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=64.95 E-value=44 Score=24.77 Aligned_cols=71 Identities=8% Similarity=0.181 Sum_probs=44.9
Q ss_pred eeeeEEEEecCeEEEecCCc-c--eeEE--EeeccccceEEEe---ccCCcEEEEEeCCCCCeeeecCcHHHHHHHHHHH
Q 027012 110 MKRRILLITDFAIYLVDPET-D--ALKR--RIALAAVEKMCLS---ELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEA 181 (229)
Q Consensus 110 ~~~R~LiITd~aiY~ld~~~-~--klKr--rIpL~~I~gVSvS---~~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~~ 181 (229)
=++|.++|+...||...... . .... .|++... .|.+. +...+.|.|..++..-++|+++.-.|+..++...
T Consensus 23 Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~-~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL 101 (104)
T cd01253 23 WDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGA-QCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRAL 101 (104)
T ss_pred cceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCC-EEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHH
Confidence 37889999999998876432 2 2222 3334321 22232 2345677777776678899998888888777553
No 39
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=64.80 E-value=17 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=27.3
Q ss_pred EeccCCcEEEEEeCCCCCeeeecCcHHHHHHHHHH
Q 027012 146 LSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVE 180 (229)
Q Consensus 146 vS~~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~ 180 (229)
++. .+++++|+..+ ..+++.+++-.||+..|.+
T Consensus 66 ~t~-~~~~i~I~t~~-~~y~isp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 66 ATR-NKNVILIKTKD-KTYVISPEDPEEFIEALKK 98 (100)
T ss_pred EEC-CCCEEEEEECC-ceEEEcCCCHHHHHHHHHh
Confidence 344 78888999877 8999999999999988865
No 40
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=64.29 E-value=72 Score=25.41 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=51.9
Q ss_pred ceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCCCC----eeeecCc---HHHHHHHHHHH
Q 027012 109 KMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYD----LLMASTR---KTEIVTVLVEA 181 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D----~ll~s~~---ktElvt~L~~~ 181 (229)
|+++-.|-|+...|.++|+++-.+..-.||..|+-++--+..+.+|..-..+... .+|.|.. -.|++..|-++
T Consensus 39 k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~~D~~d~~~FayIakd~~~~~~CHvF~~~~~~~A~~I~~tigqA 118 (127)
T cd01274 39 TIPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVCQDREDLNFFAYITKDTENRHYCHVFCVLTSGLAAEIITTLGQA 118 (127)
T ss_pred CCCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEecCCCCceEEEEEeeCCCCCEEEEEEEcCCHHHHHHHHHHHHHH
Confidence 5677789999999999999887777777888887555434444577776654322 2334433 26677888887
Q ss_pred Hhc
Q 027012 182 TKG 184 (229)
Q Consensus 182 ~~~ 184 (229)
++.
T Consensus 119 F~~ 121 (127)
T cd01274 119 FEV 121 (127)
T ss_pred HHH
Confidence 763
No 41
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=59.95 E-value=16 Score=29.20 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=53.2
Q ss_pred CCccEEEeeeEEEeCCCCceeeeEEEEecCeEEEecCCc---cee-EEEeeccccceEEEecc----CCcEEEEEeCCCC
Q 027012 91 GDKQVLFADKILKFTGSGKMKRRILLITDFAIYLVDPET---DAL-KRRIALAAVEKMCLSEL----SDNFFAIIIPSEY 162 (229)
Q Consensus 91 ~~e~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~ld~~~---~kl-KrrIpL~~I~gVSvS~~----~D~~~VIhv~~e~ 162 (229)
.+|+|.++=.. .+-.++.||+.|..+|.+. -|. -..||++.|+.+|+-+. -|..+-|.+.+.+
T Consensus 29 ~gE~I~~ayk~---------iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~ 99 (124)
T PF08000_consen 29 DGEEIEAAYKL---------IRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQG 99 (124)
T ss_dssp TT--EEEEEEE---------SSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTES
T ss_pred CCCeeeeeehh---------hceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCc
Confidence 46888877544 3667899999999999542 233 45699999999999654 3557778887654
Q ss_pred Ceee-e---cCcHHHHHHHHHHH
Q 027012 163 DLLM-A---STRKTEIVTVLVEA 181 (229)
Q Consensus 163 D~ll-~---s~~ktElvt~L~~~ 181 (229)
..+- . .....|+-..|...
T Consensus 100 ~~i~~~f~k~~di~~i~k~L~~~ 122 (124)
T PF08000_consen 100 FPIEFEFKKKTDIYEIYKALAEY 122 (124)
T ss_dssp SEEEEEEGTTSHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHH
Confidence 3332 1 23455666555543
No 42
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=54.20 E-value=1.1e+02 Score=24.13 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=41.5
Q ss_pred EEEeeeEEEeCC-CCceeeeEEEEecCeEEEecC-----CcceeEEEeeccccceEEE
Q 027012 95 VLFADKILKFTG-SGKMKRRILLITDFAIYLVDP-----ETDALKRRIALAAVEKMCL 146 (229)
Q Consensus 95 VlFS~~V~Kinr-~gK~~~R~LiITd~aiY~ld~-----~~~klKrrIpL~~I~gVSv 146 (229)
.+++..+.++.. .|+.|+|.+.|=|+.+....+ ..|..|-+|.+..++=+-+
T Consensus 2 li~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~ 59 (109)
T cd01224 2 LFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNI 59 (109)
T ss_pred ceEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEEC
Confidence 467888888887 589999999999999988774 3488999999888754444
No 43
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=53.86 E-value=46 Score=22.87 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=25.0
Q ss_pred EEEEecCeEEEecCC-ccee-EEEeeccccceEEEe
Q 027012 114 ILLITDFAIYLVDPE-TDAL-KRRIALAAVEKMCLS 147 (229)
Q Consensus 114 ~LiITd~aiY~ld~~-~~kl-KrrIpL~~I~gVSvS 147 (229)
.|-||+.+|+..... .... +..||+.+|..|.-.
T Consensus 33 ~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 33 RLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp EEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred EEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 388999999887632 2333 788999999988653
No 44
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=50.45 E-value=1.5e+02 Score=25.89 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=50.3
Q ss_pred CceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEE--------eccCCcEEEEEeCCC---CCeeeecCcH---HH
Q 027012 108 GKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCL--------SELSDNFFAIIIPSE---YDLLMASTRK---TE 173 (229)
Q Consensus 108 gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSv--------S~~~D~~~VIhv~~e---~D~ll~s~~k---tE 173 (229)
++...--++||+..|-+... .-|+.|||+.|..|.. ...+| .+.|+...+ .-+++..... .+
T Consensus 23 ~~W~~~rIiLs~~rlvl~~~---~~k~~Ipls~I~Di~~~~~~~~~~~~~~~-~~si~~~~~~~~~v~~i~~~~~~~~e~ 98 (221)
T PF04283_consen 23 GKWVKGRIILSNDRLVLAFN---DGKITIPLSSIEDIGVRLPPNQLLAFFSD-YVSIKYKSDEGERVILISPEDSKTIEK 98 (221)
T ss_pred CCcEEEEEEEecCEEEEEcC---CCeEEEecceeEecccccCccccccccCc-eEEEEEecCCCcEEEEEEcCCcccHHH
Confidence 46677779999999888762 2366899999999988 44444 456777543 3445554433 77
Q ss_pred HHHHHHHHHhc
Q 027012 174 IVTVLVEATKG 184 (229)
Q Consensus 174 lvt~L~~~~~~ 184 (229)
|.+.|..+.-.
T Consensus 99 F~~~lf~~lL~ 109 (221)
T PF04283_consen 99 FETKLFRALLN 109 (221)
T ss_pred HHHHHHHHhhC
Confidence 88888887654
No 45
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=49.35 E-value=73 Score=25.81 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=49.2
Q ss_pred EEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCC--------CCeeeecC---cHHHHHHHHHHHH
Q 027012 114 ILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSE--------YDLLMAST---RKTEIVTVLVEAT 182 (229)
Q Consensus 114 ~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e--------~D~ll~s~---~ktElvt~L~~~~ 182 (229)
.|.|.-..|++++|++-++--.=++.+|+.-+--...-+.|.+-+... +-|+|.|. -..|++..|.+++
T Consensus 46 ~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~eI~lti~QAF 125 (129)
T cd01269 46 LFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCADESLVDEVMLTLKQAF 125 (129)
T ss_pred EEEEeccceEEEcCCcceEEEecCccccchhhcCCCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 355678899999999888877788888876555433334677777421 35677752 3478888888887
Q ss_pred h
Q 027012 183 K 183 (229)
Q Consensus 183 ~ 183 (229)
.
T Consensus 126 ~ 126 (129)
T cd01269 126 S 126 (129)
T ss_pred h
Confidence 5
No 46
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=47.57 E-value=1.1e+02 Score=22.24 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=50.3
Q ss_pred eEEEeCC-CCceeeeEEEEecC--eEEEecC-CcceeEEEeeccccceEEEecc---------CCcEEEEEeCCCCCeee
Q 027012 100 KILKFTG-SGKMKRRILLITDF--AIYLVDP-ETDALKRRIALAAVEKMCLSEL---------SDNFFAIIIPSEYDLLM 166 (229)
Q Consensus 100 ~V~Kinr-~gK~~~R~LiITd~--aiY~ld~-~~~klKrrIpL~~I~gVSvS~~---------~D~~~VIhv~~e~D~ll 166 (229)
...|-.. ...=++|.++|++. .|+-.+. ...+.+-.|+|+.++.|..... ...+|.|..+ ..-+.|
T Consensus 4 ~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~-~r~~~~ 82 (101)
T cd01235 4 YLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS-KRTYNF 82 (101)
T ss_pred EEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC-CceEEE
Confidence 3445443 23457899999843 5555543 3356788899999888876321 2335555554 457888
Q ss_pred ecCcHHHHHHHHHH
Q 027012 167 ASTRKTEIVTVLVE 180 (229)
Q Consensus 167 ~s~~ktElvt~L~~ 180 (229)
.++...|....+..
T Consensus 83 ~a~s~~e~~~Wi~a 96 (101)
T cd01235 83 LAENINEAQRWKEK 96 (101)
T ss_pred ECCCHHHHHHHHHH
Confidence 78777777665543
No 47
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=46.66 E-value=1.2e+02 Score=22.46 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=48.8
Q ss_pred eEEEeCCCC---ceeeeEEEEecC--eEEEecCC-cceeEEEeeccccceEEEec-cCCcEEEEEeCCCCCeeeecCcHH
Q 027012 100 KILKFTGSG---KMKRRILLITDF--AIYLVDPE-TDALKRRIALAAVEKMCLSE-LSDNFFAIIIPSEYDLLMASTRKT 172 (229)
Q Consensus 100 ~V~Kinr~g---K~~~R~LiITd~--aiY~ld~~-~~klKrrIpL~~I~gVSvS~-~~D~~~VIhv~~e~D~ll~s~~kt 172 (229)
...|...+| .=++|.++|++. .||-.... ..+..-.|+|..+. ++.++ ...+.|.|+.++ --+.|.++.-.
T Consensus 4 yL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~-~~~~~~~~~~~F~i~t~~-r~y~l~A~s~~ 81 (95)
T cd01265 4 YLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAA-FTYDPREEKGRFEIHSNN-EVIALKASSDK 81 (95)
T ss_pred cEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccE-EEcCCCCCCCEEEEEcCC-cEEEEECCCHH
Confidence 345654433 248999999854 56666543 35667779998853 33332 225677777765 46888888777
Q ss_pred HHHHHHH
Q 027012 173 EIVTVLV 179 (229)
Q Consensus 173 Elvt~L~ 179 (229)
|.-..+.
T Consensus 82 e~~~Wi~ 88 (95)
T cd01265 82 QMNYWLQ 88 (95)
T ss_pred HHHHHHH
Confidence 7665553
No 48
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=46.45 E-value=47 Score=24.90 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred cEEEeeeEEEeCCCCceeeeEEEEecCeEEEecC----------------CcceeEEEeeccccceEEEeccCCcEEEEE
Q 027012 94 QVLFADKILKFTGSGKMKRRILLITDFAIYLVDP----------------ETDALKRRIALAAVEKMCLSELSDNFFAII 157 (229)
Q Consensus 94 ~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~ld~----------------~~~klKrrIpL~~I~gVSvS~~~D~~~VIh 157 (229)
+|+|+-.+.-+.-.+. .+=.|+||+.+||..+. .....-+++|+++|..|.-=..-=.-.+|-
T Consensus 1 ~i~~s~~c~~I~~~~~-~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlE 79 (106)
T PF14844_consen 1 KILLSVPCELITPLDS-IPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALE 79 (106)
T ss_dssp --SEEEEEEEEETTEE-EEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEEEEeeee-EEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEE
Confidence 3667777766665444 34458899999998864 113345669999999888755444333444
Q ss_pred e--CCCCCeeeecC
Q 027012 158 I--PSEYDLLMAST 169 (229)
Q Consensus 158 v--~~e~D~ll~s~ 169 (229)
+ .+..-++|..+
T Consensus 80 iF~~dg~s~f~~F~ 93 (106)
T PF14844_consen 80 IFFSDGRSYFFNFE 93 (106)
T ss_dssp EEETTS-EEEEE-S
T ss_pred EEEcCCcEEEEEcC
Confidence 3 33334555443
No 49
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=46.38 E-value=1.3e+02 Score=22.73 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=46.4
Q ss_pred ceeeeEEEEecCeE--------EEecCCcceeEEEeeccccceEEEec---cCCc----EEEEEeCCCCCeeeecCcHHH
Q 027012 109 KMKRRILLITDFAI--------YLVDPETDALKRRIALAAVEKMCLSE---LSDN----FFAIIIPSEYDLLMASTRKTE 173 (229)
Q Consensus 109 K~~~R~LiITd~ai--------Y~ld~~~~klKrrIpL~~I~gVSvS~---~~D~----~~VIhv~~e~D~ll~s~~ktE 173 (229)
.=++|.++|++..+ |--++...+.+..|+|+.+..|..+. ..+. .|.|..+ +..+.|.++.-.|
T Consensus 18 ~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~-~r~y~l~A~s~ee 96 (108)
T cd01266 18 KWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETI-VRDLYLVAKNEEE 96 (108)
T ss_pred CcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeC-CccEEEEECCHHH
Confidence 44789999998753 33344457889999999976653321 1111 2445444 4688998888777
Q ss_pred HHHHHHHH
Q 027012 174 IVTVLVEA 181 (229)
Q Consensus 174 lvt~L~~~ 181 (229)
+-..+...
T Consensus 97 ~~~Wi~~I 104 (108)
T cd01266 97 MTLWVNCI 104 (108)
T ss_pred HHHHHHHH
Confidence 76666544
No 50
>PRK10215 hypothetical protein; Provisional
Probab=45.42 E-value=1e+02 Score=27.16 Aligned_cols=57 Identities=12% Similarity=0.299 Sum_probs=37.6
Q ss_pred ccceEEEeccCC---cEEEEEeCCCCCeeeecCcHHHHHHHHHHHHhccCCCeeEEEcccEEEEEc
Q 027012 140 AVEKMCLSELSD---NFFAIIIPSEYDLLMASTRKTEIVTVLVEATKGASEELEVAFSNSFEYHAA 202 (229)
Q Consensus 140 ~I~gVSvS~~~D---~~~VIhv~~e~D~ll~s~~ktElvt~L~~~~~~~~~~L~V~~~d~i~y~~~ 202 (229)
.|++++++..++ +|++|- ++|||+|... -.|+++.|..-+-.. =.|++++...|...
T Consensus 46 ~I~al~~a~dg~~~k~~VfvG--e~y~Yil~~g-~~~fv~lL~~p~i~~---~~i~v~~~~~F~~d 105 (218)
T PRK10215 46 TITGLSLAKDSNGTKGWVFVG--EHFDYLLTDG-ADEVVKMLNDPAINR---HKIQVADDAKFVLN 105 (218)
T ss_pred eEEEEEEeecCCCceeEEEEe--cccCEEEcCC-cHHHHHHhcCccCCC---CeEEecCCceEEec
Confidence 489999999884 576654 5799999543 258999998766211 13455555555554
No 51
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=45.06 E-value=1.7e+02 Score=23.74 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=43.0
Q ss_pred CCceeeeEEEEecCeEEEecCC----------cceeEEEeeccccceEEEeccCCc-EEEEEeCCC-CCeeeec
Q 027012 107 SGKMKRRILLITDFAIYLVDPE----------TDALKRRIALAAVEKMCLSELSDN-FFAIIIPSE-YDLLMAS 168 (229)
Q Consensus 107 ~gK~~~R~LiITd~aiY~ld~~----------~~klKrrIpL~~I~gVSvS~~~D~-~~VIhv~~e-~D~ll~s 168 (229)
+.|+++|-+.|=+++|..-++. +|..|..|.++++ +|+=+..+|+ =|.|..... .=|++.+
T Consensus 26 r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~l-glte~v~gd~~kFeiw~~~~~~~yilqA 98 (133)
T cd01227 26 RFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAV-GITENVKGDTKKFEIWYNAREEVYILQA 98 (133)
T ss_pred ccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecc-cccccCCCCccEEEEEeCCCCcEEEEEc
Confidence 4678888888888888777432 4888999999998 8887777776 345555432 3444444
No 52
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=44.69 E-value=47 Score=33.50 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=48.2
Q ss_pred ccEEEeeeEEEeCCCCceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcE
Q 027012 93 KQVLFADKILKFTGSGKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNF 153 (229)
Q Consensus 93 e~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~ 153 (229)
+.|.....|.-+....|..-+.+|+||..||+.+--=-++.+.++|.+|.+|.+-..--+|
T Consensus 29 e~IRa~EPCVVVSds~k~~f~~VVLSd~~vYLtEnPPrsi~~av~lr~I~aIeLI~D~PeF 89 (617)
T PF15087_consen 29 ERIRAYEPCVVVSDSEKKTFMYVVLSDELVYLTENPPRSIRRAVALRDIVAIELINDLPEF 89 (617)
T ss_pred hhhheeCceEEEecCCcceEEEEEecCcEEEeccCCCceeeEeeeccceeeeeeeccChhh
Confidence 5677777777777777888999999999999998433468899999999999876543333
No 53
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=42.67 E-value=1.4e+02 Score=22.08 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred EEEeCCCC-ceeeeEEEEecCeEEEecCCc---ceeEEEeeccccceEEEeccCCcEEEEEeCCCCCeeeecCcHHHHHH
Q 027012 101 ILKFTGSG-KMKRRILLITDFAIYLVDPET---DALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVT 176 (229)
Q Consensus 101 V~Kinr~g-K~~~R~LiITd~aiY~ld~~~---~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e~D~ll~s~~ktElvt 176 (229)
..|....- -=++|.++|.+..|+=...+. ...+-.|+|+.. .|.......+.|.|++++..-+.|..+...|.-.
T Consensus 5 L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~-~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~ 83 (91)
T cd01247 5 LSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKA-IIAAHEFDENRFDISVNENVVWYLRAENSQSRLL 83 (91)
T ss_pred EEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECccc-EEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHHH
Confidence 34444422 337899999998885443322 234666999875 3333333345677887665677777777777665
Q ss_pred HHHH
Q 027012 177 VLVE 180 (229)
Q Consensus 177 ~L~~ 180 (229)
.+..
T Consensus 84 Wi~a 87 (91)
T cd01247 84 WMDS 87 (91)
T ss_pred HHHH
Confidence 5543
No 54
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.51 E-value=1.2e+02 Score=21.23 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=43.3
Q ss_pred ceeeeEEEEecCeEEEecCCc---ceeEEEeeccccceEEEeccC---CcEEEEEeCCCCCeeeecCcHHHHHHHHHHH
Q 027012 109 KMKRRILLITDFAIYLVDPET---DALKRRIALAAVEKMCLSELS---DNFFAIIIPSEYDLLMASTRKTEIVTVLVEA 181 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~---~klKrrIpL~~I~gVSvS~~~---D~~~VIhv~~e~D~ll~s~~ktElvt~L~~~ 181 (229)
.-++|.++|++..++...... ......|+|...+ |...+.. ...|-|..++ .-+.|+.+.-.|+-..+...
T Consensus 15 ~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~al 91 (94)
T cd01250 15 EWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCT-VRHNGKQPDRRFCFEVISPT-KTWHFQADSEEERDDWISAI 91 (94)
T ss_pred CceEEEEEEeCCeEEEEcCCcccccccceEEeccceE-EecCccccCCceEEEEEcCC-cEEEEECCCHHHHHHHHHHH
Confidence 457899999999888775433 2334557776542 3322222 2344454454 67888888877777665543
No 55
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=39.93 E-value=1.8e+02 Score=22.69 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=50.4
Q ss_pred eeEEEeCCCC------ceeeeEEEEecCeEEEe--c--CCcce----eEEEeeccccceEEEeccCC--------cEEEE
Q 027012 99 DKILKFTGSG------KMKRRILLITDFAIYLV--D--PETDA----LKRRIALAAVEKMCLSELSD--------NFFAI 156 (229)
Q Consensus 99 ~~V~Kinr~g------K~~~R~LiITd~aiY~l--d--~~~~k----lKrrIpL~~I~gVSvS~~~D--------~~~VI 156 (229)
+...|+.|++ ++..|.+-|....-.+. + |.... -.+.++|.+|..|.-.+..+ ++.++
T Consensus 13 ~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~ 92 (123)
T PF12814_consen 13 EWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSII 92 (123)
T ss_pred cEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEE
Confidence 4678999988 99999999988655544 3 21111 12448999998887543332 22222
Q ss_pred EeCCCCCeeeecCcHHHHHHHHH
Q 027012 157 IIPSEYDLLMASTRKTEIVTVLV 179 (229)
Q Consensus 157 hv~~e~D~ll~s~~ktElvt~L~ 179 (229)
-+.++-.+-|.|+.+.|.=+.+.
T Consensus 93 i~t~~R~L~l~a~s~~~~~~W~~ 115 (123)
T PF12814_consen 93 IVTPDRSLDLTAPSRERHEIWFN 115 (123)
T ss_pred EEcCCeEEEEEeCCHHHHHHHHH
Confidence 23344577777877777655543
No 56
>PF10640 Pox_ATPase-GT: mRNA capping enzyme N-terminal, ATPase and guanylyltransferase; InterPro: IPR019602 Viral mRNA capping enzymes catalyse the first two reactions in the mRNA cap formation pathway. They are a heterodimer consisting of a large and small subunit. This domain is the N terminus of the large subunit viral mRNA capping enzyme, and carries both the ATPase and the guanylyltransferase activities of the enzyme. The guanylyltransferase enzymatic region runs from residues 242 (leucine)-273(arginine) [], the core of the active site being the lysine residue at 260 []. The ATPase activity is at the very N-terminal part of the domain []. ; GO: 0004484 mRNA guanylyltransferase activity, 0004651 polynucleotide 5'-phosphatase activity
Probab=39.90 E-value=42 Score=31.01 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred cceeEEEeeccccceEEEeccC---------------------CcEEEEEeCCCCCeeee------cCcHHHHHHHHHHH
Q 027012 129 TDALKRRIALAAVEKMCLSELS---------------------DNFFAIIIPSEYDLLMA------STRKTEIVTVLVEA 181 (229)
Q Consensus 129 ~~klKrrIpL~~I~gVSvS~~~---------------------D~~~VIhv~~e~D~ll~------s~~ktElvt~L~~~ 181 (229)
..|++.|+|+++|.|+-+-+.+ |..++|+...|.+.+|. +.=+.|+|..+.-.
T Consensus 49 ~~KiR~r~plskvhglDikN~qLV~~idniiWEkKtli~E~~i~~~~lirhSTEek~iF~Dykky~ssIklelVn~v~~~ 128 (313)
T PF10640_consen 49 GVKIRTRIPLSKVHGLDIKNVQLVDSIDNIIWEKKTLISEKKIDEGCLIRHSTEEKHIFLDYKKYLSSIKLELVNLVQAR 128 (313)
T ss_pred CceeeecccccccCCcccchhhHHHhhhcceeeeeeeechhhcCcceEEEecchhhhhhhhHHHhhcceeeeehhhHHHh
Confidence 4566666666666665543321 35677887777766662 45568899888776
Q ss_pred HhccCCCeeEEEcccEEEEEcCC
Q 027012 182 TKGASEELEVAFSNSFEYHAAAE 204 (229)
Q Consensus 182 ~~~~~~~L~V~~~d~i~y~~~~g 204 (229)
.+ .+-|.| .|.|-+++|
T Consensus 129 ik----~ivVDF--K~KyfLGsg 145 (313)
T PF10640_consen 129 IK----NIVVDF--KIKYFLGSG 145 (313)
T ss_pred hh----CeEEEE--EEEeeeccc
Confidence 66 333444 377777654
No 57
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=39.70 E-value=1.7e+02 Score=22.26 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=38.6
Q ss_pred eeeeEEEEecCeEEEecCC--cceeEEEeeccccceEEEeccCC--cEEEEEeCC-CCCeeeecCc
Q 027012 110 MKRRILLITDFAIYLVDPE--TDALKRRIALAAVEKMCLSELSD--NFFAIIIPS-EYDLLMASTR 170 (229)
Q Consensus 110 ~~~R~LiITd~aiY~ld~~--~~klKrrIpL~~I~gVSvS~~~D--~~~VIhv~~-e~D~ll~s~~ 170 (229)
.++|.+.+=++.|...++. +|+.|-+|.++.+ +|+=+...| .|-|++..+ +.-+.+.+..
T Consensus 16 ~~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l-~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s 80 (97)
T cd01222 16 GKPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNL-MLVEHLPGEPLCFRVIPFDDPKGALQLTARN 80 (97)
T ss_pred CCceEEEEecccEEEEEecCCeeEEEEEEEecce-EEecCCCCCCcEEEEEecCCCceEEEEEecC
Confidence 4568888888888776553 5899999999887 555554444 355666532 2345555433
No 58
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=39.40 E-value=1.7e+02 Score=24.45 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=51.9
Q ss_pred EEeeeEEEeCC-CCceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCc-----EEEEEeCCC------CC
Q 027012 96 LFADKILKFTG-SGKMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDN-----FFAIIIPSE------YD 163 (229)
Q Consensus 96 lFS~~V~Kinr-~gK~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~-----~~VIhv~~e------~D 163 (229)
+|-..|.=+-+ ..|-.......+..+++ -+..-+..++=||++++ .|-.|+-+|. |-+||+.++ .=
T Consensus 55 VFK~AVVlv~ke~~K~KkKl~~~~r~~~~-~e~dp~rfr~miP~~al-QVR~~n~ad~e~~~vwEliH~kSe~egRpE~v 132 (160)
T cd01255 55 VFKSAVVLVYKERLKQKKKLMGVSRKNAT-NEVDPFRFRVLIPVTAL-QVRASSAADMESNFLWELIHLKSELEGRPEKV 132 (160)
T ss_pred EecceEEEEEcCcchhhhccccccccccc-cccCceeEEEeeceeee-eeecCCCcCcccceEEEEEeecccccCCCcce
Confidence 45555555555 33444444344444442 12123666777999998 6777776663 778999764 35
Q ss_pred eeeec---CcHHHHHHHHHHHHh
Q 027012 164 LLMAS---TRKTEIVTVLVEATK 183 (229)
Q Consensus 164 ~ll~s---~~ktElvt~L~~~~~ 183 (229)
+.||| +.|.-|+-.+....+
T Consensus 133 fqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 133 FVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred EEEecCCHHHHHHHHHHHHHHHH
Confidence 55665 567778877777665
No 59
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=35.59 E-value=51 Score=33.00 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=37.0
Q ss_pred eeEEEEecC-eEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCCC
Q 027012 112 RRILLITDF-AIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPSE 161 (229)
Q Consensus 112 ~R~LiITd~-aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~e 161 (229)
+|.||||+. +++-+++..+.+|-.||++....+-+-+.. -|+||+|..
T Consensus 467 kr~lllTn~~rll~~~~~~~~lk~eip~~~~~~~e~~n~~--~~~i~TP~k 515 (604)
T KOG0592|consen 467 KRMLLLTNGPRLLYVDPQNLVLKGEIPWSPDLRVELKNSS--TFFIHTPNK 515 (604)
T ss_pred eeEEEecCCCeEEEEecccceeccccccCcccceeeccCc--ceEEECCcc
Confidence 499999998 777778888999999999996555555433 357999863
No 60
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=34.54 E-value=3.5e+02 Score=24.41 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=44.2
Q ss_pred CccCCCCchHHHHHHhhcCC-----ccEEEeeeEEEeCCCC-ceeeeEEEEecC-eEEEecCCcceeEEEeecccc-ceE
Q 027012 73 DYLDVASHPYLMKILQKQGD-----KQVLFADKILKFTGSG-KMKRRILLITDF-AIYLVDPETDALKRRIALAAV-EKM 144 (229)
Q Consensus 73 DYL~~~~~~~~~~l~~k~~~-----e~VlFS~~V~Kinr~g-K~~~R~LiITd~-aiY~ld~~~~klKrrIpL~~I-~gV 144 (229)
+||.+.. ......++++.+ ..++-.-...|-|... ....+.+|=|+. .||+||+..|.+..++.|..+ ..|
T Consensus 152 ~~L~l~~-ee~~~fi~~~k~~pl~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i 230 (257)
T PF14779_consen 152 RFLQLDP-EEREAFIERYKDSPLKRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFI 230 (257)
T ss_pred HHHCCCH-HHHHHHHHHHhcCCcccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEE
Confidence 5666643 223344555432 2344333344444444 444555555776 899999999999888887776 455
Q ss_pred EEecc
Q 027012 145 CLSEL 149 (229)
Q Consensus 145 SvS~~ 149 (229)
+++-.
T Consensus 231 ~~~G~ 235 (257)
T PF14779_consen 231 SVSGQ 235 (257)
T ss_pred EEEee
Confidence 55543
No 61
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=34.11 E-value=2e+02 Score=21.59 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=58.3
Q ss_pred ceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEe-----CCCCCeeeecCcHHHHHHHHHHHHh
Q 027012 109 KMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIII-----PSEYDLLMASTRKTEIVTVLVEATK 183 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv-----~~e~D~ll~s~~ktElvt~L~~~~~ 183 (229)
-.-+-.|-||+..|.++++..-..--..||..|..-.. .++.|.+-. .++|-+.|.++.-.+|...|..+.+
T Consensus 20 l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~---~~~~F~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~~i~ 96 (100)
T PF02174_consen 20 LSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGR---DDGIFSFEAGRRCPTGEGLFWFQTPDAEEIFETVERAIK 96 (100)
T ss_dssp SEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEE---ETTEEEEEESTTSTTCSEEEEEEESTHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhcc---CCCEEEEEECCcCCCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 34566788999999999887778888899999988764 478888887 2568999999998888888777765
No 62
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=30.59 E-value=3e+02 Score=22.51 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=56.5
Q ss_pred ceeeeEEEEecCeEEEecCCcceeEEEeeccccceEEEeccCCcEEEEEeCC-CCCeeeec---CcH-HHHHHHHHHHHh
Q 027012 109 KMKRRILLITDFAIYLVDPETDALKRRIALAAVEKMCLSELSDNFFAIIIPS-EYDLLMAS---TRK-TEIVTVLVEATK 183 (229)
Q Consensus 109 K~~~R~LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~~~D~~~VIhv~~-e~D~ll~s---~~k-tElvt~L~~~~~ 183 (229)
|.++=.|-|+-..|-++|+++..+....|+..|+-++.-+..+-.|..-+.+ ++-..|.+ +.. .+++-.|.+++.
T Consensus 51 kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~~~~~H~f~~~k~~k~A~~i~lti~~aF~ 130 (139)
T cd01215 51 HKTRITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGEPGGKHRFYGIKTAQAADQVVLAIRDLFQ 130 (139)
T ss_pred ccceEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEcCCCcEEEEEEEhHHcchhhhhhHHHHHH
Confidence 5566678899999999999999999999999999999988888888888754 55444433 222 345566666664
No 63
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=27.99 E-value=58 Score=25.62 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=23.1
Q ss_pred ccEEEeeeEEEeCCCCceeeeEEEEecCeEEEec
Q 027012 93 KQVLFADKILKFTGSGKMKRRILLITDFAIYLVD 126 (229)
Q Consensus 93 e~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~ld 126 (229)
++|++|+.+.-++--....- .|.||+.+||...
T Consensus 1 ~~ivls~~~~mVtPl~vvpG-~l~ITt~~lyF~~ 33 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKG-TLSITTTEIFFEV 33 (108)
T ss_pred CCeEEEeeeeEEEEEEEecc-EEEEecCEEEEEE
Confidence 46788888776665333333 3889999999884
No 64
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=27.35 E-value=98 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=20.9
Q ss_pred eccccceEEEeccCCcEEEEEeCCCCCeee
Q 027012 137 ALAAVEKMCLSELSDNFFAIIIPSEYDLLM 166 (229)
Q Consensus 137 pL~~I~gVSvS~~~D~~~VIhv~~e~D~ll 166 (229)
-+..|.+|.-|.+.|+.+++|++...-+.|
T Consensus 23 ~f~sv~siRkSEl~d~~~iV~Lk~~~~~~~ 52 (79)
T PF09625_consen 23 TFESVKSIRKSELRDGVYIVQLKKGEVLHF 52 (79)
T ss_dssp TSTTEEEEEE-SS-TTEEEEEE-TT--EEE
T ss_pred HHHHHHHHHHhhcccceEEEEEecCCEEEE
Confidence 467789999999999999999987555554
No 65
>PF08378 NERD: Nuclease-related domain; InterPro: IPR011528 The nuclease-related domain (NERD) is found in a broad range of bacterial, as well as single archaeal and plant proteins. Most NERD-containing proteins have a single domain, sometimes with additional (predicted) transmembrane helices. In a few instances, proteins containing NERD domains have additional domains (mostly involved in DNA processing), such as the HRDC, the UvrD/REP helicase, the DNA-binding C4 zinc finger, or the serine/threonine and tyrosine protein kinases. In all cases in which a NERD domain is present in multidomain proteins, it is found at the N terminus. The NERD domain is predicted to function in DNA processing, and may have a nuclease function [].
Probab=25.22 E-value=2.8e+02 Score=20.43 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=27.8
Q ss_pred cEEEeeeEEEeCCCCceeeeEEEEecCeEEEecCCcce
Q 027012 94 QVLFADKILKFTGSGKMKRRILLITDFAIYLVDPETDA 131 (229)
Q Consensus 94 ~VlFS~~V~Kinr~gK~~~R~LiITd~aiY~ld~~~~k 131 (229)
-.+|++.-......+..+--.||||+..||+|+-+.+.
T Consensus 22 ~~v~~~i~~~~~~~~~~eiD~lvi~~~gi~viE~K~~~ 59 (115)
T PF08378_consen 22 YHVFHNIRLPDPQGGTREIDHLVITPKGIFVIEVKNWS 59 (115)
T ss_pred EEEEeceEEeccCCCCceeEEEEEeCCEEEEEEEeccc
Confidence 45666655443446688899999999999999975433
No 66
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=25.03 E-value=1.4e+02 Score=20.35 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.6
Q ss_pred EEEecCeEEEecCCcceeEEEeeccccceEEEec
Q 027012 115 LLITDFAIYLVDPETDALKRRIALAAVEKMCLSE 148 (229)
Q Consensus 115 LiITd~aiY~ld~~~~klKrrIpL~~I~gVSvS~ 148 (229)
..||+..|++-.+--.+-...+|+..|..|+++.
T Consensus 6 y~i~~~~l~i~~G~~~~~~~~i~~~~Iq~v~~~q 39 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFSKRTTIIPLDRIQSVSIKQ 39 (80)
T ss_pred EEEECCEEEEEECeEEEEEEEEEhhHeEEEEEEc
Confidence 5678888887765334456669999999999954
No 67
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=23.98 E-value=97 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEeeccccceEEEeccC---CcEEEEEeCC
Q 027012 133 KRRIALAAVEKMCLSELS---DNFFAIIIPS 160 (229)
Q Consensus 133 KrrIpL~~I~gVSvS~~~---D~~~VIhv~~ 160 (229)
.+.|||++|++|...+-. ++++=+.+.+
T Consensus 26 ~~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~ 56 (94)
T PF14472_consen 26 EKTIPLSAISGVEWKPPGGLTNGYLRFVLRG 56 (94)
T ss_pred CEEEEHHHcceEEEEcCCceeEEEEEEEECC
Confidence 567999999999998444 6676666654
No 68
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.73 E-value=3.6e+02 Score=20.67 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=43.7
Q ss_pred eeeeEEEEecC-eEEEe-cCC-cceeEEEeeccccceEEEec---cCCcEEEEEeCCCCCeeeecCcHHHHHHHHHH
Q 027012 110 MKRRILLITDF-AIYLV-DPE-TDALKRRIALAAVEKMCLSE---LSDNFFAIIIPSEYDLLMASTRKTEIVTVLVE 180 (229)
Q Consensus 110 ~~~R~LiITd~-aiY~l-d~~-~~klKrrIpL~~I~gVSvS~---~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~ 180 (229)
=++|.++|++. -+|-. +.. ..+.+-.|+|+....|.-.. ...+-|.|..| +..+.|.++...|.=..|..
T Consensus 24 WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp-~R~f~l~Aete~E~~~Wi~~ 99 (104)
T cd01236 24 WQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTP-DKEHFIKAETKEEISWWLNM 99 (104)
T ss_pred ccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECC-CceEEEEeCCHHHHHHHHHH
Confidence 37899999864 55443 321 23557789998877766331 11234444444 57888888888887665543
No 69
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=22.33 E-value=2e+02 Score=22.63 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=41.7
Q ss_pred CCcceeEEEeeccccceEEEe-----ccCCcEEEEEeCCCCCeeeecCcHHHHHHHHHHH
Q 027012 127 PETDALKRRIALAAVEKMCLS-----ELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEA 181 (229)
Q Consensus 127 ~~~~klKrrIpL~~I~gVSvS-----~~~D~~~VIhv~~e~D~ll~s~~ktElvt~L~~~ 181 (229)
|+.-+-|-.|+.+.|..|--+ +...|.|||++.+..+|+|+...-.++-++|...
T Consensus 45 PKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~I 104 (107)
T cd01231 45 PKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAEL 104 (107)
T ss_pred CCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHH
Confidence 455666777888888776543 3456789999988889999998888888777664
No 70
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.60 E-value=70 Score=29.65 Aligned_cols=42 Identities=33% Similarity=0.529 Sum_probs=29.9
Q ss_pred EEEeCCCC-ce-eeeEEEEecCeEEEecCCccee-EEEeeccccc
Q 027012 101 ILKFTGSG-KM-KRRILLITDFAIYLVDPETDAL-KRRIALAAVE 142 (229)
Q Consensus 101 V~Kinr~g-K~-~~R~LiITd~aiY~ld~~~~kl-KrrIpL~~I~ 142 (229)
..|...++ |. .+|.+|+|++.+|-++-.+-|- +--|||.+++
T Consensus 266 LlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNls 310 (395)
T KOG0930|consen 266 LLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLS 310 (395)
T ss_pred eeeecCCcccchhheeEEeecceeeeeeeccCCCCCcceeccccc
Confidence 66765432 22 6899999999999998765543 4458888763
Done!