Query 027013
Match_columns 229
No_of_seqs 156 out of 1537
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 8.4E-47 1.8E-51 320.3 15.6 208 6-217 4-212 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 2.3E-22 5E-27 146.9 8.3 87 131-217 1-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 1.6E-21 3.4E-26 142.5 5.8 86 10-98 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 6.3E-14 1.4E-18 119.6 6.5 91 127-217 3-94 (243)
5 COG4095 Uncharacterized conser 99.4 1.2E-12 2.5E-17 94.1 6.3 84 129-215 4-87 (89)
6 COG4095 Uncharacterized conser 99.3 1.1E-11 2.4E-16 89.0 7.5 83 8-96 5-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 2.2E-07 4.7E-12 79.1 14.2 188 8-205 4-212 (220)
8 PF04193 PQ-loop: PQ loop repe 98.2 4.5E-06 9.7E-11 56.5 5.7 53 15-69 6-58 (61)
9 PF04193 PQ-loop: PQ loop repe 98.1 1.2E-05 2.6E-10 54.4 5.7 57 131-190 3-59 (61)
10 KOG3211 Predicted endoplasmic 97.8 0.00065 1.4E-08 56.8 12.0 192 9-216 32-226 (230)
11 KOG2913 Predicted membrane pro 97.1 0.016 3.4E-07 50.7 13.1 165 9-177 7-210 (260)
12 PRK01021 lpxB lipid-A-disaccha 96.4 0.11 2.4E-06 50.4 14.6 199 9-224 11-228 (608)
13 TIGR00951 2A43 Lysosomal Cysti 96.2 0.009 1.9E-07 50.9 5.5 50 130-182 4-53 (220)
14 smart00679 CTNS Repeated motif 95.2 0.018 4E-07 33.5 2.5 26 25-50 2-27 (32)
15 PHA02246 hypothetical protein 94.9 1.7 3.6E-05 35.1 16.8 171 14-205 8-185 (192)
16 PF03650 MPC: Uncharacterised 94.4 0.0048 1E-07 47.4 -2.0 80 135-219 21-102 (119)
17 smart00679 CTNS Repeated motif 93.9 0.057 1.2E-06 31.3 2.4 28 147-174 2-29 (32)
18 PF10688 Imp-YgjV: Bacterial i 93.8 0.66 1.4E-05 37.6 9.3 150 7-205 4-153 (163)
19 PF03650 MPC: Uncharacterised 90.7 0.12 2.5E-06 39.8 1.1 62 36-98 39-100 (119)
20 KOG1589 Uncharacterized conser 90.7 0.14 3E-06 38.6 1.4 60 36-96 43-102 (118)
21 KOG2913 Predicted membrane pro 90.2 0.72 1.6E-05 40.3 5.7 59 127-188 6-64 (260)
22 PHA02246 hypothetical protein 88.1 3.9 8.5E-05 33.0 8.0 63 17-81 115-177 (192)
23 KOG1589 Uncharacterized conser 88.0 0.13 2.8E-06 38.7 -0.4 66 146-216 36-103 (118)
24 KOG3211 Predicted endoplasmic 86.2 1.4 3.1E-05 37.1 4.8 73 23-97 154-226 (230)
25 PF07578 LAB_N: Lipid A Biosyn 83.1 3.2 6.9E-05 29.1 4.7 44 158-201 22-65 (72)
26 PF10688 Imp-YgjV: Bacterial i 79.6 5.2 0.00011 32.4 5.6 38 48-88 118-155 (163)
27 PF01034 Syndecan: Syndecan do 77.9 0.77 1.7E-05 31.4 0.2 28 201-228 23-54 (64)
28 KOG3145 Cystine transporter Cy 77.6 23 0.00049 31.8 9.2 197 24-227 137-370 (372)
29 PF06946 Phage_holin_5: Phage 68.3 10 0.00023 27.9 4.2 59 166-224 35-93 (93)
30 COG3952 Predicted membrane pro 64.5 19 0.00042 27.1 5.0 76 131-210 27-102 (113)
31 PF07578 LAB_N: Lipid A Biosyn 61.0 16 0.00035 25.6 3.8 51 27-82 14-65 (72)
32 KOG1590 Uncharacterized conser 53.9 10 0.00022 29.3 2.0 67 144-212 35-103 (132)
33 PRK10746 putative transport pr 53.2 77 0.0017 29.6 8.3 31 127-157 357-387 (461)
34 PRK10580 proY putative proline 52.8 1E+02 0.0022 28.6 9.0 31 128-158 355-385 (457)
35 PF09586 YfhO: Bacterial membr 41.4 3.8E+02 0.0083 26.9 14.0 17 26-42 231-247 (843)
36 PRK11387 S-methylmethionine tr 38.2 1.2E+02 0.0026 28.3 7.1 30 196-225 439-468 (471)
37 PRK05771 V-type ATP synthase s 35.7 4.4E+02 0.0095 25.9 14.9 39 24-68 326-364 (646)
38 KOG4314 Predicted carbohydrate 34.8 1.8E+02 0.0039 24.8 6.7 53 124-176 126-178 (290)
39 TIGR00341 conserved hypothetic 34.7 1.7E+02 0.0037 26.5 7.1 52 45-98 114-165 (325)
40 PRK11056 hypothetical protein; 31.9 1.5E+02 0.0033 22.8 5.4 22 4-25 11-32 (120)
41 PF05602 CLPTM1: Cleft lip and 31.3 1.3E+02 0.0027 28.2 6.0 70 15-87 306-376 (438)
42 TIGR00905 2A0302 transporter, 30.2 2.3E+02 0.0049 26.4 7.6 27 198-224 421-447 (473)
43 PF15102 TMEM154: TMEM154 prot 29.8 63 0.0014 25.8 3.1 29 189-217 59-87 (146)
44 PF02468 PsbN: Photosystem II 29.1 72 0.0016 20.0 2.7 28 197-225 12-39 (43)
45 KOG2489 Transmembrane protein 24.9 4.8E+02 0.01 25.3 8.4 159 23-185 333-521 (592)
46 PF07226 DUF1422: Protein of u 24.5 1.7E+02 0.0036 22.5 4.5 22 4-25 11-32 (117)
47 PRK13183 psbN photosystem II r 24.3 70 0.0015 20.4 2.0 24 201-225 19-42 (46)
48 PRK15402 multidrug efflux syst 23.8 5.1E+02 0.011 22.9 11.4 11 176-186 358-368 (406)
49 PRK01021 lpxB lipid-A-disaccha 23.2 6.8E+02 0.015 24.8 9.4 75 8-90 140-215 (608)
50 PF01372 Melittin: Melittin; 23.0 1.5E+02 0.0032 16.4 2.8 15 24-38 10-24 (26)
51 PRK10644 arginine:agmatin anti 22.4 3.7E+02 0.008 24.7 7.4 29 130-158 350-378 (445)
52 PRK15487 O-antigen ligase RfaL 22.1 5E+02 0.011 24.0 8.1 73 4-84 320-393 (400)
53 PF01102 Glycophorin_A: Glycop 22.1 53 0.0012 25.4 1.4 23 77-99 70-92 (122)
54 KOG2532 Permease of the major 21.7 3.7E+02 0.008 25.4 7.3 137 12-150 266-412 (466)
55 PF11177 DUF2964: Protein of u 21.7 2.7E+02 0.0058 18.9 5.0 26 124-149 30-55 (62)
56 KOG2325 Predicted transporter/ 21.1 5.1E+02 0.011 24.9 8.0 19 194-212 210-228 (488)
57 PF07857 DUF1632: CEO family ( 21.1 1.7E+02 0.0037 25.5 4.5 66 130-195 180-254 (254)
58 PF03189 Otopetrin: Otopetrin; 20.9 4.5E+02 0.0098 24.7 7.6 50 159-209 307-362 (441)
59 CHL00020 psbN photosystem II p 20.8 80 0.0017 19.9 1.7 20 206-225 18-39 (43)
60 KOG3106 ER lumen protein retai 20.4 2.5E+02 0.0053 23.7 5.0 59 146-209 129-191 (212)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=8.4e-47 Score=320.28 Aligned_cols=208 Identities=44% Similarity=0.791 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHH
Q 027013 6 LLNFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 85 (229)
Q Consensus 6 ~~~~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~ 85 (229)
...+++|..|.+.|+++|++|+|+++||+|+||+||.|..||+++++||.+|+.|| .++++|..++.+|++|++++.+
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~~ 81 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIETV 81 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999 5676579999999999999999
Q ss_pred HHHHhhhcccchhHHHHH-HHHHHHHHHHHHHhhhhcceecCcchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCcccc
Q 027013 86 YIILFITYTEKDKKVRML-GLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFM 164 (229)
Q Consensus 86 ~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~ 164 (229)
|+..|+.|+++|+..+.. ....+++ ...++++....++++.+.+.+|.+|++++++||+|||..+++|+|+||+|.|
T Consensus 82 Yi~~f~~ya~~k~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~m 159 (243)
T KOG1623|consen 82 YISIFLYYAPKKKTVKIVLALVLGVI--GLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYM 159 (243)
T ss_pred HHHHHheecCchheeEeeehHHHHHH--HHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeee
Confidence 999999999998843221 1111112 2222334445677888899999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhheeeeeCCCC
Q 027013 165 PFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSG 217 (229)
Q Consensus 165 ~~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~ 217 (229)
|++++++.++++..|+.||++.+|.|+.+||++|++++..|+.+|++|++++.
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTE 212 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999987763
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.87 E-value=2.3e-22 Score=146.93 Aligned_cols=87 Identities=37% Similarity=0.518 Sum_probs=84.3
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhhee
Q 027013 131 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 210 (229)
Q Consensus 131 ~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l~~ 210 (229)
+++|.+|++.++++++||+++++|++|+||++++|..+++..++||.+|+.||++.+|++++.+|.+|.+++..|+.+|+
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCC
Q 027013 211 NYKETSG 217 (229)
Q Consensus 211 ~y~~~~~ 217 (229)
+|+++||
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998775
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.84 E-value=1.6e-21 Score=142.50 Aligned_cols=86 Identities=24% Similarity=0.588 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHHH
Q 027013 10 FLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 89 (229)
Q Consensus 10 ~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~~ 89 (229)
++|.+|.+.++++++||+|+++|++|+||+|++|+.|++...+||.+|+.|| ++. +|++++.+|++|++++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~-~d~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILI-NDWPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhc-CCeeEEeeHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999 677 4578999999999999999999
Q ss_pred hhhcccchh
Q 027013 90 FITYTEKDK 98 (229)
Q Consensus 90 ~~~y~~~~~ 98 (229)
|++|++|||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.47 E-value=6.3e-14 Score=119.61 Aligned_cols=91 Identities=23% Similarity=0.365 Sum_probs=85.9
Q ss_pred cchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccC-CceEEechhHHHHHHHHH
Q 027013 127 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNW-DPFIYVPNGIGTILGIVQ 205 (229)
Q Consensus 127 ~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~-d~~i~~~N~~g~~l~~~q 205 (229)
+....++|..|.+.++++|.+|.++++|+.|+||+|+.|..|++++++||.+|+.||++.+ |..+..-|++|+.+..++
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Y 82 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVY 82 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999987 888888899999999999
Q ss_pred hhheeeeeCCCC
Q 027013 206 LALYFNYKETSG 217 (229)
Q Consensus 206 l~l~~~y~~~~~ 217 (229)
+..|+.|.++|+
T Consensus 83 i~~f~~ya~~k~ 94 (243)
T KOG1623|consen 83 ISIFLYYAPKKK 94 (243)
T ss_pred HHHHheecCchh
Confidence 999999988776
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=1.2e-12 Score=94.10 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=77.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhh
Q 027013 129 RQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLAL 208 (229)
Q Consensus 129 ~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l 208 (229)
..+++|.+|+.++.++| +||+.+++|+||++++++.+++....+..+|+.||++++|.++...|.++..++..-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 46789999999999998 799999999999999999999999999999999999999999999999999999988887
Q ss_pred eeeeeCC
Q 027013 209 YFNYKET 215 (229)
Q Consensus 209 ~~~y~~~ 215 (229)
...|..|
T Consensus 81 kI~~~~k 87 (89)
T COG4095 81 KIKYILK 87 (89)
T ss_pred HHHHHHh
Confidence 7777544
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.1e-11 Score=89.02 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHH
Q 027013 8 NFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 87 (229)
Q Consensus 8 ~~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~ 87 (229)
.++.|+.|+..+. ++-+||..+++|+||++++|+.+|+.....+++|+.|| ++. ++.|+...|.++..++..-+
T Consensus 5 ~~viG~ia~iltt---f~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi-~~lPii~aN~i~~il~liIl 78 (89)
T COG4095 5 IEVIGTIAGILTT---FAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILI-NDLPIIIANIISFILSLIIL 78 (89)
T ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHH-ccCcchhHHHHHHHHHHHHH
Confidence 4566776666665 66799999999999999999999999999999999999 788 46899999999999999988
Q ss_pred HHhhhcccc
Q 027013 88 ILFITYTEK 96 (229)
Q Consensus 88 ~~~~~y~~~ 96 (229)
....+|..|
T Consensus 79 ~~kI~~~~k 87 (89)
T COG4095 79 FYKIKYILK 87 (89)
T ss_pred HHHHHHHHh
Confidence 888776543
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.78 E-value=2.2e-07 Score=79.10 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHh--------hhcccccCceEEEee----
Q 027013 8 NFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY--------GTPLVSADNILVTTV---- 75 (229)
Q Consensus 8 ~~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~Y--------G~~~l~~~~~~v~~~---- 75 (229)
..++|+... .+-..+-+||+++.+|+||++++|+..+..-..+..+|..| . .. +..+.-..
T Consensus 4 S~~lG~~~~---~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~---~~-~~~~~~~~~v~~ 76 (220)
T TIGR00951 4 SQILGWGYV---AAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS---IT-NEFPLSSPGVTQ 76 (220)
T ss_pred HHHHHHHHH---HHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh---hh-hccccccCCCcH
Confidence 344555444 44447789999999999999999999999999999999999 4 22 22322211
Q ss_pred hhhh-----HHHHHHHHHHhhhcccchhHH-H-HHHH-HHHHHHHHHHHhhhhcceecCcchhhhhhhHHHHHHHHHHHh
Q 027013 76 NSIG-----AAFQLVYIILFITYTEKDKKV-R-MLGL-LLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFAS 147 (229)
Q Consensus 76 N~~g-----~~l~~~~~~~~~~y~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~s 147 (229)
|-+- .++......-+.+|.++.+|+ + ..+. +....+..+...........+.+....++.+...+++.-+
T Consensus 77 edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~iky-- 154 (220)
T TIGR00951 77 NDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKY-- 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH--
Confidence 3333 222222222223333322222 1 1111 1111111111111111122334455556666666666555
Q ss_pred hHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcc-cCCceEEechhHHHHHHHHH
Q 027013 148 PLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGTILGIVQ 205 (229)
Q Consensus 148 Pl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l-~~d~~i~~~N~~g~~l~~~q 205 (229)
+||++.-.|.||++..|.......+.++..-..-... .+|...+.-..++..++.+-
T Consensus 155 -iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~ 212 (220)
T TIGR00951 155 -FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLF 212 (220)
T ss_pred -hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888888886665555543 35666666666666666543
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.19 E-value=4.5e-06 Score=56.48 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCc
Q 027013 15 GNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN 69 (229)
Q Consensus 15 g~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~ 69 (229)
|.+..++...+.+||+++.+|+||++++|...+.....+..+|+.|. ++.+++
T Consensus 6 g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~ 58 (61)
T PF04193_consen 6 GIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 34444555588999999999999999999999999999999999999 565443
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.06 E-value=1.2e-05 Score=54.36 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccCCce
Q 027013 131 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPF 190 (229)
Q Consensus 131 ~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d~~ 190 (229)
+.+|.++.++....+ +||+.+.+|+||++++|+.+......++.+|+.|.+..++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666666665555 899999999999999999999999999999999999987643
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.75 E-value=0.00065 Score=56.76 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHH
Q 027013 9 FFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYII 88 (229)
Q Consensus 9 ~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~ 88 (229)
...|+.-...++ .--+||+.+|+.+||++++|...+..-+++-..-+.|. .+++..+.-+--..=++++.+-++
T Consensus 32 klLg~~~va~sl---~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vili 105 (230)
T KOG3211|consen 32 KLLGLSTVAGSL---LVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVILI 105 (230)
T ss_pred hhhhHHHHHHHH---HhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHHH
Confidence 444554444444 33689999999999999999999999999999999999 454544333334444556655554
Q ss_pred Hhhhccc-chhHH-HHHHHHHHHHHHHHHHhhhhcceecCcchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccch
Q 027013 89 LFITYTE-KDKKV-RMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPF 166 (229)
Q Consensus 89 ~~~~y~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~ 166 (229)
.+..+-+ ..... ...+....+.... .+......++-...+...-+.-.+-+.|+..-.|+|+++..++
T Consensus 106 ~~if~f~~~~~~~v~~l~~~~~v~~~~----------~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~ 175 (230)
T KOG3211|consen 106 LCIFHFSGQTVTVVQFLGYIALVVSVL----------ASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSL 175 (230)
T ss_pred HHHHHhccceeehhhHHHHHHHHHHHH----------HHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHH
Confidence 4433222 11111 1111111100000 0111223333333333333444677899999999999999999
Q ss_pred HHHHHHHHhhhHHhhhhccc-CCceEEechhHHHHHHHHHhhheeeeeCCC
Q 027013 167 YLSLSTFLMSTSFLAYGIMN-WDPFIYVPNGIGTILGIVQLALYFNYKETS 216 (229)
Q Consensus 167 ~~~~~~~~~~~lW~~YG~l~-~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~ 216 (229)
.....++-.+.--..+.+-. +|.-++..-++...++.+-..-..+|++++
T Consensus 176 it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 176 ITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 99999998888888898885 677777777777777766555556666543
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.10 E-value=0.016 Score=50.66 Aligned_cols=165 Identities=18% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHH
Q 027013 9 FFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYII 88 (229)
Q Consensus 9 ~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~ 88 (229)
+.-..+|.+.+.+-...-+||+....|+||.+++|+++.+.-+.+...=+.|. .+++. .++...-.+=..++...+.
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~-~~~~~~~~~yy~~~d~~l~ 83 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL-GSTLKVQAVYYTLADSVLF 83 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc-chhHHHHHHHHHHHHHHHH
Confidence 33445666777777788899999999999999999999988888888888888 45532 2111111111222222233
Q ss_pred HhhhcccchhH---------HHH-HH----------------------HHH----HHHHHHHHHhhhhc-ceecCc-chh
Q 027013 89 LFITYTEKDKK---------VRM-LG----------------------LLL----AVIGIFSIIVAVSL-QIVNPF-SRQ 130 (229)
Q Consensus 89 ~~~~y~~~~~~---------~~~-~~----------------------~~~----~~~~~~~~~~~~~~-~~~~~~-~~~ 130 (229)
+...|.++..+ .+. .. ... .++..... .+... .....+ ...
T Consensus 84 ~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 162 (260)
T KOG2913|consen 84 VQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGA-AYESLLRAVRVNGLEI 162 (260)
T ss_pred HHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHH-Hhhccccccccchhhh
Confidence 33333332222 110 00 000 00001100 00000 000011 223
Q ss_pred hhhhh-HHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhh
Q 027013 131 MFVGL-LSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMST 177 (229)
Q Consensus 131 ~~lG~-~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~ 177 (229)
+.+|. +|.+...+-.++.+||+..-+|.|+++++++.++....+.+.
T Consensus 163 ~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~ 210 (260)
T KOG2913|consen 163 DSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNT 210 (260)
T ss_pred cchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcccc
Confidence 44555 444556667788999999999999999999988777776664
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.44 E-value=0.11 Score=50.45 Aligned_cols=199 Identities=13% Similarity=0.150 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhH-HHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHH
Q 027013 9 FFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPY-VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 87 (229)
Q Consensus 9 ~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~ 87 (229)
..+|++|-+.-..- -+-|... .+|..+++-|.-| ...+.++.+-+.|| ++.+ |.+++....+|.++..=.+
T Consensus 11 ~~~G~~~q~~F~~r---f~~QW~~--sek~~~s~~p~~FW~~Sl~g~~~l~~y~--~~~~-~~~~~~~q~~~~~iy~rNl 82 (608)
T PRK01021 11 YPLGLFANLFFGSA---FCIQWFL--SKKRKYSYVPKIFWILSSIGAVLMICHG--FIQS-QFPIALLHSFNLIIYFRNL 82 (608)
T ss_pred HHHHHHHHHHHHHH---HHHHHHH--HHhcCCccCchHHHHHHHHHHHHHHHHH--HHhc-CCcEEEecccceEEEeehh
Confidence 34566555443322 2333333 3444445556666 55888999999999 6664 4667766777655422111
Q ss_pred HHhhhcccchhHHHHH-HHHH--HHHHH--HHHHhhhhccee-------------cCcchhhhhhhHHHHHHHHHHHhhH
Q 027013 88 ILFITYTEKDKKVRML-GLLL--AVIGI--FSIIVAVSLQIV-------------NPFSRQMFVGLLSCAALISMFASPL 149 (229)
Q Consensus 88 ~~~~~y~~~~~~~~~~-~~~~--~~~~~--~~~~~~~~~~~~-------------~~~~~~~~lG~~~~~~si~~~~sPl 149 (229)
..- .+++.-.+.. ..+. ..+.. +++.++.....+ +.+..-..+|.+|-++-..-| +
T Consensus 83 ~l~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~ 156 (608)
T PRK01021 83 NIA---SSRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---F 156 (608)
T ss_pred hhc---ccccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---H
Confidence 111 1122212211 1111 11111 122222221111 111223456666655544444 2
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhheeeeeCCCCCCCCCCc
Q 027013 150 FIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPL 224 (229)
Q Consensus 150 ~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~~~~~~~~ 224 (229)
-|-.. -+++..+.+|......++.++.+=+.|++.++|...+.....|.+.-.-.+ +.+++.+++++--+|+
T Consensus 157 ~Qw~~-se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl--~li~~~~~~~~~~~~k 228 (608)
T PRK01021 157 IQWFY-LEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANL--RIAYKEARRKPFSNTS 228 (608)
T ss_pred HHHHH-HHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHH--HHHHhhcccccccCCe
Confidence 33222 334445678999999999999999999999999999999999998766664 4455555555444443
No 13
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.25 E-value=0.009 Score=50.88 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=44.0
Q ss_pred hhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhh
Q 027013 130 QMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAY 182 (229)
Q Consensus 130 ~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~Y 182 (229)
...+|....++....+ +||+.+..|+||++++|+......+++...|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4567777777776666 7999999999999999999999999999999999
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.25 E-value=0.018 Score=33.45 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHhcCcCCcCchhHHHH
Q 027013 25 SPVPTFRRIIRNHSTEEFSGLPYVYA 50 (229)
Q Consensus 25 sp~p~~~~i~k~kst~~~s~~p~~~~ 50 (229)
+-+||+.+.+|+||++++|...+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 56899999999999999986655543
No 15
>PHA02246 hypothetical protein
Probab=94.88 E-value=1.7 Score=35.12 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccC--ceEEEeehhhhHHHHHHHHHHhh
Q 027013 14 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD--NILVTTVNSIGAAFQLVYIILFI 91 (229)
Q Consensus 14 lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~--~~~v~~~N~~g~~l~~~~~~~~~ 91 (229)
+...-+++......|+...+.|.|+.+++| -.|+-......+--.|- .+..+ .+.++ +-+.-+.++.+.+.+--
T Consensus 8 ~s~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyN--lL~T~~~~fqi~-svg~nl~lgivcLlv~~ 83 (192)
T PHA02246 8 LSILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYN--LLLTDASVFQIV-SVGLNLTLGIVCLLVAS 83 (192)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHH--HHhcCCceEEEe-eeehhhhhhhhheeeeh
Confidence 334455666778899999999999999998 45666666677778888 44433 34433 33334455555554422
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHhhhhcceecCcchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHH
Q 027013 92 TYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLS 171 (229)
Q Consensus 92 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~ 171 (229)
|++|+--.+-.. .++.++ ++. ..+.....+.+ |...-+ .+-.+|+.+-+|||++|+.+...++.
T Consensus 84 -~rkkd~f~~~fi---iifSLl---lfl---l~~~~evtQtV---at~tIi---LaYi~QIIqfyKTK~SEg~n~~l~li 147 (192)
T PHA02246 84 -YRKKDYFSIPFI---IVFSLL---LFL---LSDFTALTQTV---ATITII---LAYVTQITTFYKTKSAEGTNRFLFLI 147 (192)
T ss_pred -hhccccccchHH---HHHHHH---HHH---HhhhHHHHHHH---HHHHHH---HHHHHHHHHHhhhcccCCCChhHHHH
Confidence 222211001111 111111 111 11111222333 222222 23479999999999999999887654
Q ss_pred HHHhhhHHhhhhcccCC--ceEEec---hhHHHHHHHHH
Q 027013 172 TFLMSTSFLAYGIMNWD--PFIYVP---NGIGTILGIVQ 205 (229)
Q Consensus 172 ~~~~~~lW~~YG~l~~d--~~i~~~---N~~g~~l~~~q 205 (229)
.-.+-. -+.......+ .++++. |.+=.+.|-.|
T Consensus 148 i~~GL~-~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 148 IGLGLA-SLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred HHHHHH-HHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 443322 2233333333 455554 44444434333
No 16
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.40 E-value=0.0048 Score=47.38 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhccc--CCceEEechhHHHHHHHHHhhheeee
Q 027013 135 LLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNY 212 (229)
Q Consensus 135 ~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~--~d~~i~~~N~~g~~l~~~ql~l~~~y 212 (229)
+-|.++.=.+-++++.++ +|..|.+|..+..+.++.+.+|+-|++.+ +|+.++..|..-...+..|+.=+..|
T Consensus 21 FWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y 95 (119)
T PF03650_consen 21 FWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNY 95 (119)
T ss_pred eehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433444445554 58999999999999999999999999998 68888888999999999999888888
Q ss_pred eCCCCCC
Q 027013 213 KETSGEE 219 (229)
Q Consensus 213 ~~~~~~~ 219 (229)
...++++
T Consensus 96 ~~~~~~~ 102 (119)
T PF03650_consen 96 QYSQKKE 102 (119)
T ss_pred HhhcCch
Confidence 6655443
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.94 E-value=0.057 Score=31.30 Aligned_cols=28 Identities=29% Similarity=0.110 Sum_probs=23.3
Q ss_pred hhHHHHHHHHhcCCccccchHHHHHHHH
Q 027013 147 SPLFIINLVIQTKSVEFMPFYLSLSTFL 174 (229)
Q Consensus 147 sPl~~i~~vi~tks~~~~~~~~~~~~~~ 174 (229)
+-+||+.+.+|+|+++++|+.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4579999999999999999887765544
No 18
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=93.79 E-value=0.66 Score=37.60 Aligned_cols=150 Identities=9% Similarity=0.045 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHH
Q 027013 7 LNFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 86 (229)
Q Consensus 7 ~~~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~ 86 (229)
+.+.+|.+|.+..+.-| ..|+-+. ........+.++...- .+-+. .+-+.+..++..-
T Consensus 4 ~aQ~~g~ia~~l~~~sf-----------~~k~~~~----l~~~~~~~~~~~~ihf--~LLGa-----~taa~~~~ls~~R 61 (163)
T PF10688_consen 4 LAQILGFIAFLLGILSF-----------QQKDDRR----LLLLQAISCLLFAIHF--ALLGA-----WTAALSMLLSAVR 61 (163)
T ss_pred HHHHHHHHHHHHHHHHH-----------HcccHHH----HHHHHHHHHHHHHHHH--HHhCh-----HHHHHHHHHHHHH
Confidence 34667777666666433 1122222 2244455555665555 34423 2456666777776
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhcceecCcchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccch
Q 027013 87 IILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPF 166 (229)
Q Consensus 87 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~ 166 (229)
..+-.++++ +.. ...+.......+ ..+.+.-.+.++.+|++....... .++ ++.
T Consensus 62 ~~~s~~~~~--~~v--~~~Fi~~~~~~~--------~~~~~g~~~~l~~~as~~~t~a~f----------~~~---~~~- 115 (163)
T PF10688_consen 62 NFVSIRTRS--RWV--MAVFIALSLVMG--------LFTWQGWIELLPYAASVLGTIALF----------MLD---GIK- 115 (163)
T ss_pred HHHHHHhCC--HHH--HHHHHHHHHHHH--------HHHHhhHHHHHHHHHHHHHHHHHH----------hcC---chh-
Confidence 666555543 111 111111111111 112234567777777665544221 111 112
Q ss_pred HHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHH
Q 027013 167 YLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQ 205 (229)
Q Consensus 167 ~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~q 205 (229)
+=....+++.+|..|+++.+++....-|......+...
T Consensus 116 -mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 116 -MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 22567899999999999999998888888777766554
No 19
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=90.74 E-value=0.12 Score=39.83 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=53.3
Q ss_pred hcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHHHhhhcccchh
Q 027013 36 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDK 98 (229)
Q Consensus 36 ~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~~~~~y~~~~~ 98 (229)
+|..+.+|..+-...++.+.+|+.|++ .+++.++.++.+|.+-...+.+++.=++.|....+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999999999996 56677788999999999999999987777754433
No 20
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=0.14 Score=38.61 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=52.6
Q ss_pred hcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHHHhhhcccc
Q 027013 36 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 96 (229)
Q Consensus 36 ~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~~~~~y~~~ 96 (229)
.|..+.+|...........++|..|++ .+++.++.++.+|.+=...+.+++.=.+.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999996 566778989999999999999999988888443
No 21
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=90.20 E-value=0.72 Score=40.33 Aligned_cols=59 Identities=15% Similarity=-0.021 Sum_probs=47.1
Q ss_pred cchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccCC
Q 027013 127 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWD 188 (229)
Q Consensus 127 ~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d 188 (229)
++.....|.+..++....+ .||+.+..|+|+.+++|+...+...+..+.=..|..+.+-
T Consensus 6 ~~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~ 64 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL 64 (260)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc
Confidence 3455666666666666655 6999999999999999999999988888888888877753
No 22
>PHA02246 hypothetical protein
Probab=88.14 E-value=3.9 Score=33.00 Aligned_cols=63 Identities=6% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHH
Q 027013 17 IFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAA 81 (229)
Q Consensus 17 i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~ 81 (229)
+.+..+.++-+||+.+-+|+|+.|+.|+.-++..-.+-.+ +...+ .+++....++.+..+...
T Consensus 115 Vat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~-L~~~m-~Lthv~~hIiiTEf~N~i 177 (192)
T PHA02246 115 VATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS-LIVSM-VLTHTYVHIIATEFVNFV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH-HHHHH-hhhCCcceeeHHHHHHHH
Confidence 4455556788999999999999999998777654443322 33331 234333445555544443
No 23
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=0.13 Score=38.74 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=55.5
Q ss_pred HhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhccc--CCceEEechhHHHHHHHHHhhheeeeeCCC
Q 027013 146 ASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKETS 216 (229)
Q Consensus 146 ~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~--~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~ 216 (229)
.+.+.++ .|..|.+|....++.+..++.|+-|.+.+ +|+.++..|++=.+-+..|+.=...|...+
T Consensus 36 ~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~ 103 (118)
T KOG1589|consen 36 IAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQ 103 (118)
T ss_pred eecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 35788999999999999999999999998 799999999998889999999888885433
No 24
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=86.21 E-value=1.4 Score=37.11 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=61.7
Q ss_pred HhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHHHhhhcccch
Q 027013 23 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKD 97 (229)
Q Consensus 23 ~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~~~~~y~~~~ 97 (229)
..+=++|+.+-+|+|++|..|.+...+.+..|..=..|. ....+|+.+...-.+..+++..-..-..+|.++.
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 367789999999999999999999999999999999999 6777888888888888888877777777776544
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=83.08 E-value=3.2 Score=29.11 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=35.7
Q ss_pred cCCccccchHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHH
Q 027013 158 TKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTIL 201 (229)
Q Consensus 158 tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l 201 (229)
++..+.+|......+...+.+=++||+.++|...+.....|.+.
T Consensus 22 k~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 22 KAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 33445678888899999999999999999999777767777654
No 26
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=79.64 E-value=5.2 Score=32.36 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHH
Q 027013 48 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYII 88 (229)
Q Consensus 48 ~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~ 88 (229)
.....++.+|+.|+ ++. ++++....|......+.+.+.
T Consensus 118 ~~~l~~~~~w~~~n--~~i-gS~~g~l~e~~~~~~n~~~i~ 155 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILI-GSWGGTLMEALFIISNLITIY 155 (163)
T ss_pred HHHHHHHHHHHHHH--HHH-cCHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999 666 447677778877777665543
No 27
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=77.90 E-value=0.77 Score=31.38 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=1.8
Q ss_pred HHHHHhhheeeeeCCCCCC----CCCCccccC
Q 027013 201 LGIVQLALYFNYKETSGEE----SRDPLIVSY 228 (229)
Q Consensus 201 l~~~ql~l~~~y~~~~~~~----~~~~~~~~~ 228 (229)
+..+-++++.+|+-++++| .+|||..++
T Consensus 23 l~ailLIlf~iyR~rkkdEGSY~l~e~K~s~~ 54 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKKDEGSYDLDEPKPSNY 54 (64)
T ss_dssp --------------S------SS--S------
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCcccc
Confidence 4455677888999888888 888887554
No 28
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=77.56 E-value=23 Score=31.79 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=89.8
Q ss_pred hccHHHHHHHHHhcCcCCcCchhHH-------H-HHHHHHHHHHhhhcccccC--------ceEEEeeh-----hhhHHH
Q 027013 24 VSPVPTFRRIIRNHSTEEFSGLPYV-------Y-ALLNCLITMWYGTPLVSAD--------NILVTTVN-----SIGAAF 82 (229)
Q Consensus 24 ~sp~p~~~~i~k~kst~~~s~~p~~-------~-~~~n~~~W~~YG~~~l~~~--------~~~v~~~N-----~~g~~l 82 (229)
.|..||++-=+|+||+.++|.=-.. . ...|++ +.|. |.++++ ..|+. .| .=|+++
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~--ly~~-~~iq~~y~~~~p~g~~pv~-~nDv~fslHa~lm 212 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFL--LYYC-PKIQNQYDTSYPLGVPPVT-LNDVVFSLHAVLM 212 (372)
T ss_pred eeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHH--HHhc-HHhccceeccCCCCCCccc-hhhhhhhHHHHHH
Confidence 4667999999999999987742111 1 222222 2222 122321 11221 12 224555
Q ss_pred HHHHHHHhhhcccchhHH-H-HHHHHHHHHHHHHHHh-hhhcceec-CcchhhhhhhHHHHHHHHHHHhhHHHHHHHHhc
Q 027013 83 QLVYIILFITYTEKDKKV-R-MLGLLLAVIGIFSIIV-AVSLQIVN-PFSRQMFVGLLSCAALISMFASPLFIINLVIQT 158 (229)
Q Consensus 83 ~~~~~~~~~~y~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~t 158 (229)
..+.+.-...|.+..+|. + +....++++..++... +.....+. --.-...+..+-..++.+=| +||...-.+.
T Consensus 213 t~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKY---iPQa~mN~tR 289 (372)
T KOG3145|consen 213 TVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKY---IPQAYMNFTR 289 (372)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHhhccee
Confidence 666666556666655543 2 2222333333332221 11100000 00011222223333344444 5788888889
Q ss_pred CCccccchHHH----HHHHHhhhHHhhhhcccCCceEEechhHHHHHHH-------HHhh-heeeeeCCCCCCCCCCccc
Q 027013 159 KSVEFMPFYLS----LSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGI-------VQLA-LYFNYKETSGEESRDPLIV 226 (229)
Q Consensus 159 ks~~~~~~~~~----~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~-------~ql~-l~~~y~~~~~~~~~~~~~~ 226 (229)
||+++-|..=. -.+.++-+.-..-..-.+||--+..|---+.+++ +-+. -|..||+++-.++|||...
T Consensus 290 KSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~~~~~~~s~y~g~~ 369 (372)
T KOG3145|consen 290 KSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYPRGHVLKSEYPGED 369 (372)
T ss_pred ccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEeccccccCCCCCCCC
Confidence 99988764321 1222222333333333344544444432222222 2222 3456676666668888765
Q ss_pred c
Q 027013 227 S 227 (229)
Q Consensus 227 ~ 227 (229)
+
T Consensus 370 ~ 370 (372)
T KOG3145|consen 370 S 370 (372)
T ss_pred C
Confidence 4
No 29
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=68.27 E-value=10 Score=27.86 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhheeeeeCCCCCCCCCCc
Q 027013 166 FYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPL 224 (229)
Q Consensus 166 ~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~~~~~~~~ 224 (229)
..|.++..+..++=..+..+.+|.-+..--..|.+.++....++=.+.+|++|..||.|
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~~ 93 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDDK 93 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCCC
Confidence 45556666666666677777776655444467888888888888778888888788764
No 30
>COG3952 Predicted membrane protein [Function unknown]
Probab=64.47 E-value=19 Score=27.12 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=56.1
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhhee
Q 027013 131 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 210 (229)
Q Consensus 131 ~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l~~ 210 (229)
..+|..|..+-..-|. .=+-..+.++.+.+|.+..-.+++.+.+=+.|.+-++|..=+..|+.|...++..+-+..
T Consensus 27 ~LiG~~g~~lFt~Rf~----VQw~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 27 KLIGFSGQLLFTGRFV----VQWLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555444333332 113346778888999999999999999999999999998777779999988887765544
No 31
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=61.00 E-value=16 Score=25.62 Aligned_cols=51 Identities=10% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCcCCcCchhH-HHHHHHHHHHHHhhhcccccCceEEEeehhhhHHH
Q 027013 27 VPTFRRIIRNHSTEEFSGLPY-VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 82 (229)
Q Consensus 27 ~p~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l 82 (229)
+-|...-.|+| ++.-|..| ...+.++.+=+.|| +.+ +|+..+...++|.+.
T Consensus 14 ~~QW~~SEk~k--~sv~P~~FW~lSl~Gs~lll~Y~--i~r-~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAK--KSVVPVAFWYLSLIGSLLLLIYA--IIR-KDPVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcC--CCCCcHHHHHHHHHHHHHHHHHH--HHH-cChHHHHHHhcChHH
Confidence 44444444443 33444455 66889999999999 566 446555555666554
No 32
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.88 E-value=10 Score=29.25 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=51.7
Q ss_pred HHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhccc--CCceEEechhHHHHHHHHHhhheeee
Q 027013 144 MFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNY 212 (229)
Q Consensus 144 ~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l~--~d~~i~~~N~~g~~l~~~ql~l~~~y 212 (229)
.++-|+..+.+ -+||-+-+|-.|..+.++=+.+.+-|++.. +|+.++.-.........+|..=|..|
T Consensus 35 NwGlpiAal~D--mkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~ 103 (132)
T KOG1590|consen 35 NWGLPIAALVD--MKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNY 103 (132)
T ss_pred hccchHHHHHh--ccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 35556666666 467889999999999999999999999987 57777766667777777787666554
No 33
>PRK10746 putative transport protein YifK; Provisional
Probab=53.17 E-value=77 Score=29.59 Aligned_cols=31 Identities=10% Similarity=-0.165 Sum_probs=17.7
Q ss_pred cchhhhhhhHHHHHHHHHHHhhHHHHHHHHh
Q 027013 127 FSRQMFVGLLSCAALISMFASPLFIINLVIQ 157 (229)
Q Consensus 127 ~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~ 157 (229)
++.-+.+-.+++......|..+.....+-.|
T Consensus 357 ~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 357 QRVFVYVYSASVLPGMVPWFVILISQLRFRR 387 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666667777777654444443
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=52.81 E-value=1e+02 Score=28.62 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=19.2
Q ss_pred chhhhhhhHHHHHHHHHHHhhHHHHHHHHhc
Q 027013 128 SRQMFVGLLSCAALISMFASPLFIINLVIQT 158 (229)
Q Consensus 128 ~~~~~lG~~~~~~si~~~~sPl~~i~~vi~t 158 (229)
+.-+.+..+++......|..+.....+-.|+
T Consensus 355 ~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 355 NVFLVIASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777776655444433
No 35
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=41.41 E-value=3.8e+02 Score=26.91 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=13.4
Q ss_pred cHHHHHHHHHhcCcCCc
Q 027013 26 PVPTFRRIIRNHSTEEF 42 (229)
Q Consensus 26 p~p~~~~i~k~kst~~~ 42 (229)
-+|++....+++..++-
T Consensus 231 llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 231 LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHhCCCccCC
Confidence 37889998888887764
No 36
>PRK11387 S-methylmethionine transporter; Provisional
Probab=38.16 E-value=1.2e+02 Score=28.28 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhheeeeeCCCCCCCCCCcc
Q 027013 196 GIGTILGIVQLALYFNYKETSGEESRDPLI 225 (229)
Q Consensus 196 ~~g~~l~~~ql~l~~~y~~~~~~~~~~~~~ 225 (229)
..|..+-..-+..|..++|++++--+|+..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T PRK11387 439 WCGIPFVALCYGAYYLTQRLKRNMTQEARH 468 (471)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHhhhh
Confidence 345554455555666666655554555443
No 37
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.70 E-value=4.4e+02 Score=25.91 Aligned_cols=39 Identities=13% Similarity=0.463 Sum_probs=29.6
Q ss_pred hccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccC
Q 027013 24 VSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 68 (229)
Q Consensus 24 ~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~ 68 (229)
..|+..+-+.+-.=+-++++|.|+++... ++.+| ++-.|
T Consensus 326 ~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFG--mM~gD 364 (646)
T PRK05771 326 IKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFG--MMLGD 364 (646)
T ss_pred hhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHH--HHHHh
Confidence 45777777777777889999999987654 67788 56656
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=34.82 E-value=1.8e+02 Score=24.81 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=41.7
Q ss_pred ecCcchhhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhh
Q 027013 124 VNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMS 176 (229)
Q Consensus 124 ~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~ 176 (229)
.+.+..++.+|..|.+.+-.|-+--=-.+|+.+-+-|-++.+.-++..+++|-
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 35566788999999998888777655667888888888888888877777764
No 39
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=34.67 E-value=1.7e+02 Score=26.48 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHHHHHhhhcccchh
Q 027013 45 LPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDK 98 (229)
Q Consensus 45 ~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~~~~~~~y~~~~~ 98 (229)
..|..+..-+..=-..| .+.|+...++..=.++=.++-..-..+-.-..|++
T Consensus 114 ~~yl~~l~lA~iIA~iG--Ll~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~~ 165 (325)
T TIGR00341 114 KGRSVVTILAGIIALSG--LIMNNAVILIGAMIIAPLLGPIHGFAVNLSVGDVK 165 (325)
T ss_pred HhHHHHHHHHHHHHHHh--hcccCHHHHHHHHHHHHhHHHHHHHHHHHHcCcHH
Confidence 35666666677778899 67755444444444454555555555544444444
No 40
>PRK11056 hypothetical protein; Provisional
Probab=31.86 E-value=1.5e+02 Score=22.79 Aligned_cols=22 Identities=32% Similarity=0.141 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027013 4 WLLLNFFLLVAGNIFAFGLFVS 25 (229)
Q Consensus 4 ~~~~~~~~g~lg~i~ti~l~~s 25 (229)
|+....+.|..++..-..++.|
T Consensus 11 tLlLaliaGl~~ng~fs~Lf~s 32 (120)
T PRK11056 11 TLLLALIAGLSINGTFAALFSS 32 (120)
T ss_pred hHHHHHHHHHhhchhhHHHHcc
Confidence 4455566676666554445443
No 41
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=31.26 E-value=1.3e+02 Score=28.25 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhcccc-cCceEEEeehhhhHHHHHHHH
Q 027013 15 GNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVS-ADNILVTTVNSIGAAFQLVYI 87 (229)
Q Consensus 15 g~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~-~~~~~v~~~N~~g~~l~~~~~ 87 (229)
..+-++.=|++-=-++.-++++||-+++|....+.-+++...=+.|= +. +..+.+.+++++|++++++=+
T Consensus 306 s~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~WKv 376 (438)
T PF05602_consen 306 SLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAWKV 376 (438)
T ss_pred HHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhheee
Confidence 34445555677778999999999999999888777777777667776 33 235889999999999988644
No 42
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=30.21 E-value=2.3e+02 Score=26.43 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=12.6
Q ss_pred HHHHHHHHhhheeeeeCCCCCCCCCCc
Q 027013 198 GTILGIVQLALYFNYKETSGEESRDPL 224 (229)
Q Consensus 198 g~~l~~~ql~l~~~y~~~~~~~~~~~~ 224 (229)
|..+-..-+.+|..+++++++..-|||
T Consensus 421 ~~~~~~~g~~~y~~~~~~~~~~~~~~~ 447 (473)
T TIGR00905 421 GFILYAPGIIFYGRARKERGKHVFNKK 447 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 444334444555555544444344444
No 43
>PF15102 TMEM154: TMEM154 protein family
Probab=29.84 E-value=63 Score=25.80 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=17.3
Q ss_pred ceEEechhHHHHHHHHHhhheeeeeCCCC
Q 027013 189 PFIYVPNGIGTILGIVQLALYFNYKETSG 217 (229)
Q Consensus 189 ~~i~~~N~~g~~l~~~ql~l~~~y~~~~~ 217 (229)
..|++|-+++.++-+.-+.+.++|+||+.
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 35667866665555555666666655443
No 44
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=29.11 E-value=72 Score=20.05 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhheeeeeCCCCCCCCCCcc
Q 027013 197 IGTILGIVQLALYFNYKETSGEESRDPLI 225 (229)
Q Consensus 197 ~g~~l~~~ql~l~~~y~~~~~~~~~~~~~ 225 (229)
.++++++.-..+|.-+. .+++++|||-.
T Consensus 12 ~~~lv~~Tgy~iYtaFG-ppSk~LrDPfe 39 (43)
T PF02468_consen 12 SCLLVSITGYAIYTAFG-PPSKELRDPFE 39 (43)
T ss_pred HHHHHHHHhhhhhheeC-CCccccCCccc
Confidence 34444555555555554 35677999843
No 45
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=24.87 E-value=4.8e+02 Score=25.30 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=99.5
Q ss_pred HhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhccccc-CceEEEeehhhhHHHHHHHHHHhh----------
Q 027013 23 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSA-DNILVTTVNSIGAAFQLVYIILFI---------- 91 (229)
Q Consensus 23 ~~sp~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~-~~~~v~~~N~~g~~l~~~~~~~~~---------- 91 (229)
|++-=-++-=+.++||-+++|.-..+..++++..=+.|= +.+ .++.|.++-++|+.+.++=+---+
T Consensus 333 fLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~i 409 (592)
T KOG2489|consen 333 FLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGLI 409 (592)
T ss_pred HHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecCCccEEEEEeccceeeeeeeecceEEEEEEeccccc
Confidence 344445556678899999999999888999888888887 443 357788999999988765332111
Q ss_pred -------------hcccchhHH------HHHHHHHHHHHHHHHHhhhhcceecCcchhhhhhhHHHHHHHHHHHhhHHHH
Q 027013 92 -------------TYTEKDKKV------RMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFII 152 (229)
Q Consensus 92 -------------~y~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i 152 (229)
.|.+++.+. |-.+.++.-+++ +..+|.....+...-..-++-.+.+.+-.+=|.-.+||+
T Consensus 410 ~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~v-g~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQL 488 (592)
T KOG2489|consen 410 PGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLV-GGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQL 488 (592)
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHH
Confidence 111111111 111111211111 111233333444444556666666666666677778999
Q ss_pred HHHHhcCCccccchHHHHHHHHhhhHHhhhhcc
Q 027013 153 NLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 185 (229)
Q Consensus 153 ~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l 185 (229)
---.|=||.+.+|-.+..==++|.+.==++++.
T Consensus 489 FINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFV 521 (592)
T KOG2489|consen 489 FINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFV 521 (592)
T ss_pred HhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888887654444433
No 46
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=24.52 E-value=1.7e+02 Score=22.47 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027013 4 WLLLNFFLLVAGNIFAFGLFVS 25 (229)
Q Consensus 4 ~~~~~~~~g~lg~i~ti~l~~s 25 (229)
|+....+.|..++..-..++.|
T Consensus 11 tLlLaliaGl~~n~~~s~L~~s 32 (117)
T PF07226_consen 11 TLLLALIAGLCGNATFSALFSS 32 (117)
T ss_pred hHHHHHHHHHhccchhHHHHhc
Confidence 4555566777666554445443
No 47
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=24.29 E-value=70 Score=20.41 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=12.5
Q ss_pred HHHHHhhheeeeeCCCCCCCCCCcc
Q 027013 201 LGIVQLALYFNYKETSGEESRDPLI 225 (229)
Q Consensus 201 l~~~ql~l~~~y~~~~~~~~~~~~~ 225 (229)
+++.-..+|.-+. .+++++|||-.
T Consensus 19 ~~~TgyaiYtaFG-ppSk~LrDPFe 42 (46)
T PRK13183 19 LALTGFGIYTAFG-PPSKELDDPFD 42 (46)
T ss_pred HHHhhheeeeccC-CcccccCCchh
Confidence 3333333333333 34677999953
No 48
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=23.79 E-value=5.1e+02 Score=22.88 Aligned_cols=11 Identities=0% Similarity=-0.251 Sum_probs=5.1
Q ss_pred hhHHhhhhccc
Q 027013 176 STSFLAYGIMN 186 (229)
Q Consensus 176 ~~lW~~YG~l~ 186 (229)
...-...|.+.
T Consensus 358 ~~g~~~~~~l~ 368 (406)
T PRK15402 358 TVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHhcc
Confidence 34444555543
No 49
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.24 E-value=6.8e+02 Score=24.81 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhH-HHHHHHHHHHHHhhhcccccCceEEEeehhhhHHHHHHH
Q 027013 8 NFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPY-VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 86 (229)
Q Consensus 8 ~~~~g~lg~i~ti~l~~sp~p~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l~~~~ 86 (229)
+.++|++|-+.-..-| +-|...-.|+| ++.=|..| ...+.++.+=+.|+ +.+. |.-.+..++.|++...=.
T Consensus 140 ~~~~G~~~q~~f~~Rf---~~Qw~~se~~~--~s~~p~~FW~~s~~G~~~~l~Y~--i~r~-dpv~i~g~~~g~~~y~rn 211 (608)
T PRK01021 140 WHLIGCIGLTIFSLRF---FIQWFYLEYNN--QSALPALFWKASLLGGSLALLYF--IRTG-DPVNILCYGCGLFPSLAN 211 (608)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhcC--CCCCcHHHHHHHHHhHHHHHHHH--HHhC-CceEEEccccchhHHHHH
Confidence 3456666544433222 33443333333 33334444 56888999999999 5664 466778899999987766
Q ss_pred HHHh
Q 027013 87 IILF 90 (229)
Q Consensus 87 ~~~~ 90 (229)
+...
T Consensus 212 l~li 215 (608)
T PRK01021 212 LRIA 215 (608)
T ss_pred HHHH
Confidence 6443
No 50
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.96 E-value=1.5e+02 Score=16.39 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.4
Q ss_pred hccHHHHHHHHHhcC
Q 027013 24 VSPVPTFRRIIRNHS 38 (229)
Q Consensus 24 ~sp~p~~~~i~k~ks 38 (229)
...+|++..++|+|.
T Consensus 10 a~~LP~lISWIK~kr 24 (26)
T PF01372_consen 10 ATGLPTLISWIKNKR 24 (26)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHh
Confidence 567899999999874
No 51
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=22.36 E-value=3.7e+02 Score=24.69 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHhhHHHHHHHHhc
Q 027013 130 QMFVGLLSCAALISMFASPLFIINLVIQT 158 (229)
Q Consensus 130 ~~~lG~~~~~~si~~~~sPl~~i~~vi~t 158 (229)
-+.+-.++++.....|..|.....+..|+
T Consensus 350 ~~~l~~~~~~~~li~y~~~~~~~~~l~~~ 378 (445)
T PRK10644 350 FGLVSSVSVIFTLVPYLYTCAALLLLGHG 378 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555666776666555444333
No 52
>PRK15487 O-antigen ligase RfaL; Provisional
Probab=22.14 E-value=5e+02 Score=23.96 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHhcCcCCcCchhHHHHHHHHHHHHHhhhcccccCceEEEeehhhhHHH
Q 027013 4 WLLLNFFLLVAGNIFAFGLFVSPVPTFRRI-IRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 82 (229)
Q Consensus 4 ~~~~~~~~g~lg~i~ti~l~~sp~p~~~~i-~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~v~~~N~~g~~l 82 (229)
.++..--.|++|.+.-+.++.+|+-...+. .|+++ +. |+.....-...-+.|+ + +.+++-=...|..|.++
T Consensus 320 yL~~~~~~GiiGll~ll~~~~~~l~~~~~~~~~~~~-~~----~~~~~~~l~~s~i~~~--~-~~g~~~~~~~~~~~~~~ 391 (400)
T PRK15487 320 ILYIWFAAGILGLISLLYLYGAIIKETASSTFRKVE-IS----PYNAHLILLLSFIGFY--I-VRGNFEQVDINQIGIIT 391 (400)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC----hHhhhHHHHHHHHHHH--h-hccceeeeccchhHHHH
Confidence 455566679999999999999999887666 33332 22 3433333334445666 3 33445456779999866
Q ss_pred HH
Q 027013 83 QL 84 (229)
Q Consensus 83 ~~ 84 (229)
+.
T Consensus 392 ~~ 393 (400)
T PRK15487 392 GL 393 (400)
T ss_pred HH
Confidence 54
No 53
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.12 E-value=53 Score=25.38 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHhhhcccchhH
Q 027013 77 SIGAAFQLVYIILFITYTEKDKK 99 (229)
Q Consensus 77 ~~g~~l~~~~~~~~~~y~~~~~~ 99 (229)
++|++.+++-+++++.|.-+|+|
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444433333
No 54
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.75 E-value=3.7e+02 Score=25.39 Aligned_cols=137 Identities=17% Similarity=0.303 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhccHHHHHH-HHH--hcCcCCcCchhHHHHHHHHHHHHHhhhcccccC----ceEEEeehhhhHHHHH
Q 027013 12 LVAGNIFAFGLFVSPVPTFRR-IIR--NHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD----NILVTTVNSIGAAFQL 84 (229)
Q Consensus 12 g~lg~i~ti~l~~sp~p~~~~-i~k--~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~~----~~~v~~~N~~g~~l~~ 84 (229)
...|.-.+..+++.-.|+..| +.+ -|++|=++.+|++.+......+-.-+= .++.+ ..-.-.-|.++.....
T Consensus 266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD-~l~~~~ls~t~~rkifn~i~~~~~a 344 (466)
T KOG2532|consen 266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD-RLTFRILSETTVRKIFNTIAFGGPA 344 (466)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccCchHhHHHHHHhHHHHHHH
Confidence 333445555566667787665 332 566788899999998887766654441 22211 0112345888888777
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHH--h-hhhcceecCcchhhhhhhHHHHHHHHHHHhhHH
Q 027013 85 VYIILFITYTEKDKKVRMLGLLLAVIGIFSII--V-AVSLQIVNPFSRQMFVGLLSCAALISMFASPLF 150 (229)
Q Consensus 85 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~ 150 (229)
+.+..-- |.++.++...+..+....++.+.. . +..+....++-...++|..-.+.++..+.+|+.
T Consensus 345 i~l~~l~-~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 345 VFLLVLA-FTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHHeee-ecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766633 444444321111111111111100 0 111111133334566777777777777777665
No 55
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.74 E-value=2.7e+02 Score=18.91 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=18.7
Q ss_pred ecCcchhhhhhhHHHHHHHHHHHhhH
Q 027013 124 VNPFSRQMFVGLLSCAALISMFASPL 149 (229)
Q Consensus 124 ~~~~~~~~~lG~~~~~~si~~~~sPl 149 (229)
.-++......|.++-+..+..|..-|
T Consensus 30 LfD~~~~~~yg~~al~~Gv~~fV~~L 55 (62)
T PF11177_consen 30 LFDEERVFRYGVIALVVGVAGFVVML 55 (62)
T ss_pred hccccchhHHHHHHHHHHHHHHHHhC
Confidence 34556778888888888888876533
No 56
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=21.12 E-value=5.1e+02 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=11.0
Q ss_pred chhHHHHHHHHHhhheeee
Q 027013 194 PNGIGTILGIVQLALYFNY 212 (229)
Q Consensus 194 ~N~~g~~l~~~ql~l~~~y 212 (229)
|..+..++.+.++++...+
T Consensus 210 p~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFF 228 (488)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556666666665554444
No 57
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.07 E-value=1.7e+02 Score=25.51 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=35.8
Q ss_pred hhhhhhHHHHHHHHHHHh---hHHHHHHHH---hcCCccccchHHH--HH-HHHhhhHHhhhhcccCCceEEech
Q 027013 130 QMFVGLLSCAALISMFAS---PLFIINLVI---QTKSVEFMPFYLS--LS-TFLMSTSFLAYGIMNWDPFIYVPN 195 (229)
Q Consensus 130 ~~~lG~~~~~~si~~~~s---Pl~~i~~vi---~tks~~~~~~~~~--~~-~~~~~~lW~~YG~l~~d~~i~~~N 195 (229)
++++|...++++=++|++ |..-+++=- ...|.++++...+ .. .+.+.+.+.+|.+..+|..-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 478899999999888887 444333311 1223444443332 22 233444556677766655444333
No 58
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=20.87 E-value=4.5e+02 Score=24.68 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=33.0
Q ss_pred CCccccchHHHHHHHHhhhHHhhhhccc------CCceEEechhHHHHHHHHHhhhe
Q 027013 159 KSVEFMPFYLSLSTFLMSTSFLAYGIMN------WDPFIYVPNGIGTILGIVQLALY 209 (229)
Q Consensus 159 ks~~~~~~~~~~~~~~~~~lW~~YG~l~------~d~~i~~~N~~g~~l~~~ql~l~ 209 (229)
+..+.+.-.+.+.+.....++..+++.- ++. .-.-|.+-.++.++|..+-
T Consensus 307 ~~~~~LD~iLL~va~~G~~ly~~fsIia~~~~~~~~~-~~~l~l~~~ll~iiQv~~Q 362 (441)
T PF03189_consen 307 NPGRSLDVILLVVAAFGEFLYSYFSIIAGIFTDPHGS-LNWLNLIYSLLRIIQVTLQ 362 (441)
T ss_pred CccccHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cChHHHHHHHHHHHHHHHH
Confidence 4456677777888889899998888874 111 1122566667777776554
No 59
>CHL00020 psbN photosystem II protein N
Probab=20.76 E-value=80 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=11.7
Q ss_pred hhheeeee--CCCCCCCCCCcc
Q 027013 206 LALYFNYK--ETSGEESRDPLI 225 (229)
Q Consensus 206 l~l~~~y~--~~~~~~~~~~~~ 225 (229)
+.-|-+|. ..+++++|||-.
T Consensus 18 ~Tgy~iYtaFGppSk~LrDPfe 39 (43)
T CHL00020 18 FTGYALYTAFGQPSKQLRDPFE 39 (43)
T ss_pred hhheeeeeccCCchhccCCchh
Confidence 34455553 234677999953
No 60
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=2.5e+02 Score=23.69 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHhcCCccccchH----HHHHHHHhhhHHhhhhcccCCceEEechhHHHHHHHHHhhhe
Q 027013 146 ASPLFIINLVIQTKSVEFMPFY----LSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALY 209 (229)
Q Consensus 146 ~sPl~~i~~vi~tks~~~~~~~----~~~~~~~~~~lW~~YG~l~~d~~i~~~N~~g~~l~~~ql~l~ 209 (229)
.+=|||++...|++++|++-.- +.+.=.+-+.-| +|-...+|.+ ..+.++.+++|..+|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~----~~iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFW----DPIAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhccc----cchHHHHHHHHHHHH
Confidence 3458999999999999998533 223334556667 5666667733 335566677787776
Done!