Query 027013
Match_columns 229
No_of_seqs 156 out of 1537
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 35.3 46 0.0016 28.8 5.0 29 131-159 351-379 (445)
2 3tlw_A GLR4197 protein, GLIC; 19.2 3.9E+02 0.013 22.1 10.4 23 130-152 256-278 (321)
3 3dh4_A Sodium/glucose cotransp 14.9 6.3E+02 0.022 22.6 8.8 21 188-208 447-467 (530)
4 1q1s_A Large T antigen; import 10.8 94 0.0032 16.5 0.9 10 214-223 17-26 (26)
5 4djk_A Probable glutamate/gamm 9.1 4.1E+02 0.014 23.1 5.2 22 131-152 368-389 (511)
6 3bkd_A Transmembrane domain of 7.3 59 0.002 17.1 -0.8 14 187-200 2-15 (26)
7 3qrx_B Melittin; calcium-bindi 6.9 2.8E+02 0.0094 14.5 1.7 15 24-38 10-24 (26)
8 2nr1_A NR1 M2, M2; receptor, s 6.8 99 0.0034 16.6 -0.0 13 174-186 9-21 (27)
9 4gc0_A D-xylose-proton symport 6.6 4.8E+02 0.017 22.0 4.4 15 207-221 458-472 (491)
10 2ljb_A M2 protein, BM2 protein 4.9 1.2E+02 0.0042 17.1 -0.4 15 186-200 5-19 (35)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.30 E-value=46 Score=28.82 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhcC
Q 027013 131 MFVGLLSCAALISMFASPLFIINLVIQTK 159 (229)
Q Consensus 131 ~~lG~~~~~~si~~~~sPl~~i~~vi~tk 159 (229)
+.+..+++......|..+.....+..|++
T Consensus 351 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 351 GLVSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444445555556655555555444443
No 2
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=19.15 E-value=3.9e+02 Score=22.08 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHhhHHHH
Q 027013 130 QMFVGLLSCAALISMFASPLFII 152 (229)
Q Consensus 130 ~~~lG~~~~~~si~~~~sPl~~i 152 (229)
...+|..-.++-+++++|=+..+
T Consensus 256 vp~i~~~~~~~~~~v~~sll~~v 278 (321)
T 3tlw_A 256 MTYTGAIIFMIYLFYFVAVIEVT 278 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677766666666666655443
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=14.89 E-value=6.3e+02 Score=22.58 Aligned_cols=21 Identities=10% Similarity=-0.036 Sum_probs=11.9
Q ss_pred CceEEechhHHHHHHHHHhhh
Q 027013 188 DPFIYVPNGIGTILGIVQLAL 208 (229)
Q Consensus 188 d~~i~~~N~~g~~l~~~ql~l 208 (229)
|..-.-++.+++..+.+-..+
T Consensus 447 ~~~~~~~~~~~~~~~~i~~v~ 467 (530)
T 3dh4_A 447 SMPFMDQMLYTLLFTMVVIAF 467 (530)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 433334567777777665444
No 4
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=10.80 E-value=94 Score=16.50 Aligned_cols=10 Identities=0% Similarity=0.043 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 027013 214 ETSGEESRDP 223 (229)
Q Consensus 214 ~~~~~~~~~~ 223 (229)
++++++-+||
T Consensus 17 PKkKrk~~dp 26 (26)
T 1q1s_A 17 PKKKRKVEXX 26 (26)
T ss_pred CccccccCCC
Confidence 3444444443
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=9.11 E-value=4.1e+02 Score=23.08 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHHHHhhHHHH
Q 027013 131 MFVGLLSCAALISMFASPLFII 152 (229)
Q Consensus 131 ~~lG~~~~~~si~~~~sPl~~i 152 (229)
+.+..++++.....|..+....
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~~ 389 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIGY 389 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555565554433
No 6
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=7.34 E-value=59 Score=17.12 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.5
Q ss_pred CCceEEechhHHHH
Q 027013 187 WDPFIYVPNGIGTI 200 (229)
Q Consensus 187 ~d~~i~~~N~~g~~ 200 (229)
+|..+..+|.+|.+
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 56777778888874
No 7
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=6.94 E-value=2.8e+02 Score=14.46 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=11.9
Q ss_pred hccHHHHHHHHHhcC
Q 027013 24 VSPVPTFRRIIRNHS 38 (229)
Q Consensus 24 ~sp~p~~~~i~k~ks 38 (229)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 446889999999875
No 8
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.83 E-value=99 Score=16.59 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=9.2
Q ss_pred HhhhHHhhhhccc
Q 027013 174 LMSTSFLAYGIMN 186 (229)
Q Consensus 174 ~~~~lW~~YG~l~ 186 (229)
+.+.+|+.+|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4456888888765
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=6.62 E-value=4.8e+02 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=7.7
Q ss_pred hheeeeeCCCCCCCC
Q 027013 207 ALYFNYKETSGEESR 221 (229)
Q Consensus 207 ~l~~~y~~~~~~~~~ 221 (229)
..++..|..|+|.+|
T Consensus 458 ~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 458 FMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHCCCCTTCCHH
T ss_pred HHHheecCCCCCCHH
Confidence 344555655555443
No 10
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=4.92 E-value=1.2e+02 Score=17.10 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.0
Q ss_pred cCCceEEechhHHHH
Q 027013 186 NWDPFIYVPNGIGTI 200 (229)
Q Consensus 186 ~~d~~i~~~N~~g~~ 200 (229)
.+|..++.+|.+|.+
T Consensus 5 SsDplviaA~IigiL 19 (35)
T 2ljb_A 5 SSDPLVVAASIIGIL 19 (35)
T ss_dssp -CCTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 367778888888874
Done!