Query 027013
Match_columns 229
No_of_seqs 156 out of 1537
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 05:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 11.2 1.2E+02 0.0089 16.1 3.7 17 149-165 18-34 (37)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 10.8 42 0.0031 21.5 1.1 17 208-224 39-55 (91)
3 d1jfia_ a.22.1.3 (A:) Negative 7.8 2.1E+02 0.016 16.4 3.9 20 148-167 4-24 (66)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 7.0 1.6E+02 0.012 14.4 2.2 15 78-92 10-24 (30)
5 d1xioa_ f.13.1.1 (A:) Sensory 4.8 5.5E+02 0.04 18.2 9.6 55 130-185 128-182 (226)
6 d1q90a3 f.23.23.1 (A:248-292) 4.4 1.6E+02 0.011 16.3 1.2 17 149-165 17-33 (45)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 2.5E+02 0.018 14.6 1.8 12 75-86 3-14 (36)
8 d2croa_ a.35.1.2 (A:) cro 434 3.4 2.2E+02 0.016 15.9 1.5 36 26-61 29-64 (65)
9 d1rh5b_ f.23.28.1 (B:) Preprot 3.2 4E+02 0.029 15.2 2.5 19 10-30 36-54 (56)
10 d1pp7u_ a.4.5.44 (U:) 39 kda i 3.2 6.2E+02 0.045 16.4 3.9 30 28-58 12-41 (114)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.24 E-value=1.2e+02 Score=16.07 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCccccc
Q 027013 149 LFIINLVIQTKSVEFMP 165 (229)
Q Consensus 149 l~~i~~vi~tks~~~~~ 165 (229)
+.++--|+|+|..|.++
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777788888877654
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.80 E-value=42 Score=21.46 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=8.8
Q ss_pred heeeeeCCCCCCCCCCc
Q 027013 208 LYFNYKETSGEESRDPL 224 (229)
Q Consensus 208 l~~~y~~~~~~~~~~~~ 224 (229)
..++|+++++++..+|+
T Consensus 39 ~~~ryR~~~~~~~~~~~ 55 (91)
T d1fftb2 39 FAWKYRASNKDAKYSPN 55 (91)
T ss_dssp TTTTTTTSTTTCSSCCC
T ss_pred hheeeeccCCccCCCCc
Confidence 33566655555444454
No 3
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.75 E-value=2.1e+02 Score=16.41 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=13.0
Q ss_pred hHHHHHHHHhc-CCccccchH
Q 027013 148 PLFIINLVIQT-KSVEFMPFY 167 (229)
Q Consensus 148 Pl~~i~~vi~t-ks~~~~~~~ 167 (229)
|+..+++++|. .+...++-.
T Consensus 4 P~srVkkimk~~~~~~~is~~ 24 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVAAA 24 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBCTT
T ss_pred ChHHHHHHHhcCCccccccHH
Confidence 88899999994 333444433
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.98 E-value=1.6e+02 Score=14.40 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHhhh
Q 027013 78 IGAAFQLVYIILFIT 92 (229)
Q Consensus 78 ~g~~l~~~~~~~~~~ 92 (229)
+.+++++++..+|.+
T Consensus 10 fac~i~lfffaiffr 24 (30)
T d2axtt1 10 FACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455555555544
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.82 E-value=5.5e+02 Score=18.16 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccchHHHHHHHHhhhHHhhhhcc
Q 027013 130 QMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 185 (229)
Q Consensus 130 ~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~lW~~YG~l 185 (229)
+...+.++++.-+.....-....++..++++.+. .........+...+|..|++.
T Consensus 128 ~~~~f~~~~~~f~~i~y~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 128 RYLWYICGVCAFLIILWGIWNPLRAKTRTQSSEL-ANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333344455555554332 233334445556799999876
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.35 E-value=1.6e+02 Score=16.28 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCccccc
Q 027013 149 LFIINLVIQTKSVEFMP 165 (229)
Q Consensus 149 l~~i~~vi~tks~~~~~ 165 (229)
+.|+--|+|+|..|.++
T Consensus 17 laQi~LVLKKKQfEKVQ 33 (45)
T d1q90a3 17 LTQVLLVLKKKQFEKVQ 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777666543
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.86 E-value=2.5e+02 Score=14.55 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.6
Q ss_pred ehhhhHHHHHHH
Q 027013 75 VNSIGAAFQLVY 86 (229)
Q Consensus 75 ~N~~g~~l~~~~ 86 (229)
+|..|++..+.+
T Consensus 3 vN~Lg~iAt~LF 14 (36)
T d2axtm1 3 VNQLGLIATALF 14 (36)
T ss_dssp CCTTHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 355555544433
No 8
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=3.42 E-value=2.2e+02 Score=15.93 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=18.3
Q ss_pred cHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhh
Q 027013 26 PVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 61 (229)
Q Consensus 26 p~p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG 61 (229)
.-.++.++.+.++...-...-..-.+-...-|+.+|
T Consensus 29 s~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp CHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred CHhHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Confidence 456777777666533322222222333345677776
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.24 E-value=4e+02 Score=15.17 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhccHHHH
Q 027013 10 FLLVAGNIFAFGLFVSPVPTF 30 (229)
Q Consensus 10 ~~g~lg~i~ti~l~~sp~p~~ 30 (229)
+.|.+|.+..+.+ .|++.+
T Consensus 36 i~G~IGf~I~li~--~~i~~i 54 (56)
T d1rh5b_ 36 LLGIIGYIIHVPA--TYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHH--HHhhhh
Confidence 4566666655544 355554
No 10
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Probab=3.24 E-value=6.2e+02 Score=16.38 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcCCcCchhHHHHHHHHHHHH
Q 027013 28 PTFRRIIRNHSTEEFSGLPYVYALLNCLITM 58 (229)
Q Consensus 28 p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~ 58 (229)
|++.+..|+|+.+..+ .-|.-=+.+++.|.
T Consensus 12 ~~i~~~l~kr~s~~~~-~rF~~KL~naL~~t 41 (114)
T d1pp7u_ 12 PEIVAALKRKSSRDPN-SRFPRKLHMLLTYL 41 (114)
T ss_dssp HHHHHHHHSCCCSSGG-GSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcc-CCchHHHHHHHHHH
Done!