BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027018
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
          Length = 347

 Score = 31.2 bits (69), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 77  GNLSLDLSEGSKWNISRSG-FCGMRSKKFDGFIDLDSYDTIAMK-LKGDGRCYISTIYTE 134
           GNL +    G K  ++      G   +  D  +     D +A+  L+G+G CY   I  E
Sbjct: 50  GNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEE 109

Query: 135 NWVNSP---GQQEDNSWQSFVFVPKDNW 159
           +  +SP   G   D ++  +V VP   +
Sbjct: 110 HLCDSPRWLGINFDGAYAEYVIVPHYKY 137


>pdb|2JAO|A Chain A, Crystal Structure Of D12n Variant Of Mouse Cytosolic
           5'(3')- Deoxyribonucleotidase (Cdn) In Complex With
           Deoxyguanosine 5'-Monophosphate
 pdb|2JAR|A Chain A, Crystal Structure Of D12n Variant Of Mouse Cytosolic
           5'(3')- Deoxyribonucleotidase (cdn) In Complex With
           Deoxyuridine 5' -monophosphate
          Length = 200

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 120 LKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGN 176
           L  D    +  +  ++  N  G +E  SW+  +F    N ++A  P  R L +W  N
Sbjct: 132 LTRDKTVVMGDLLIDDKDNIQGLEETPSWEHILFTCCHNQHLALPPTRRRLLSWSDN 188


>pdb|2I7D|A Chain A, Structure Of Human Cytosolic Deoxyribonucleotidase In
           Complex With Deoxyuridine, Alf4 And Mg2+
 pdb|2I7D|B Chain B, Structure Of Human Cytosolic Deoxyribonucleotidase In
           Complex With Deoxyuridine, Alf4 And Mg2+
          Length = 193

 Score = 27.3 bits (59), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 141 GQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGN 176
           GQ+E  SW+  +F    N ++   P  R L +W  N
Sbjct: 149 GQEETPSWEHILFTCCHNRHLVLPPTRRRLLSWSDN 184


>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
          Length = 522

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 19/135 (14%)

Query: 58  SSASLEITESGNGMNG-IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           ++A ++     N M+G IF+   S+D+   +K N         +    + F  L S  TI
Sbjct: 306 NAADIDYIAGTNNMDGHIFA---SIDMPRINKGN---------KKVTEEDFYKLVSEFTI 353

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIA--KIPLARYLPTWR 174
              L+G    +   +YTE+W   P Q+  N  ++ V    D  ++   +I LA++    +
Sbjct: 354 TKGLRGAKTTF--DVYTESWAQDPSQE--NKKKTVVDFETDVLFLVPTEIALAQHRANAK 409

Query: 175 GNVIDAEMEMNPSRV 189
                A +  +PSR+
Sbjct: 410 SAKTYAYLFSHPSRM 424


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,735,532
Number of Sequences: 62578
Number of extensions: 338316
Number of successful extensions: 734
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 8
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)