BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027018
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30
OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2
Length = 227
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/225 (81%), Positives = 205/225 (91%), Gaps = 2/225 (0%)
Query: 1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60
Query: 61 SLEITESGNG--MNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
SLEI + G+G G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61 SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120
Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVI 178
+++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AKIPLARYLPTWRGNVI
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLARYLPTWRGNVI 180
Query: 179 DAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALR 223
D EMEMNP RV+GMSLSVNAEGG GAKSG GDFRVE+DWIKALR
Sbjct: 181 DVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDWIKALR 225
>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30,
mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2
SV=1
Length = 296
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 106/201 (52%), Gaps = 24/201 (11%)
Query: 28 PPSERYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
P +F+F + + L KW + +D+++G G S+A+LE++ +G G+ F G ++ D ++
Sbjct: 85 PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141
Query: 87 SKWNISRSGFCGMRSK------KFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSP 140
I R+G+ +R+K K + D Y+ + MK++GDGR Y+ ++TE + +
Sbjct: 142 G--IIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLM 199
Query: 141 GQQEDNSWQSFVFVPK--DNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNA 198
N +V + +W IAKIP +++ + +G V D + + +RV SV A
Sbjct: 200 W----NDIYHYVLYTRGGPHWQIAKIPFSKFFLSSKGRVQDRQGAIPLNRVTHFGFSVAA 255
Query: 199 EGGVPGAKSGPGDFRVEVDWI 219
+ G+ G F +E+D++
Sbjct: 256 KKGMDGP------FGLEIDYV 270
>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 22/226 (9%)
Query: 1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
M FR L ++ + +L E++ + ++ F KE+L KW + SD GG S
Sbjct: 91 MYHFRHLKDEIVDHWRGPEGHSLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150
Query: 61 SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
L++ + N + + G LS + + + +RSG+C M+S+ G D ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMKSRIPRGAFERKMSYDWSQFN 206
Query: 115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTW 173
T+ ++++GDGR ++ I + Q+ + + F+F W KIP +++ +
Sbjct: 207 TLYLRVRGDGRPWMVNIKEDTDF---FQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSN 263
Query: 174 RGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWI 219
RG + D + E+ ++ + ++ A G F +E+D+I
Sbjct: 264 RGRIRDVQHELPLDKISSIGFTL--------ADKVDGPFFLEIDFI 301
>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan
troglodytes GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 22/226 (9%)
Query: 1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
M FR L ++ + L E++ + ++ F KE+L KW + SD GG S
Sbjct: 91 MYHFRHLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150
Query: 61 SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
L++ + N + + G LS + + + +RSG+C M S+ G D ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFN 206
Query: 115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTW 173
T+ ++++GDGR ++ I + Q+ + + F+F W KIP +++ +
Sbjct: 207 TLYLRVRGDGRPWMVNIKEDTDFF---QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSN 263
Query: 174 RGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWI 219
RG + D + E+ ++ + ++ A G F +E+D+I
Sbjct: 264 RGRIRDVQHELPLDKISSIGFTL--------ADKVDGPFFLEIDFI 301
>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1
Length = 278
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 4 FRGLWQASLNATKRALTWNLEELMPPSE--------RYIFNFNSKEELKKWHLYSDSEYG 55
F+ W SL+ R L ++ SE R I NF + E + L SD++ G
Sbjct: 9 FKSFWSRSLDELSR-----LTNIVVKSENIRGATGPREIHNFQTPESVADCKLLSDADVG 63
Query: 56 GLSSASLEITESGNGMNGI--------------------FSGNLSLDLSEGSKWNISRSG 95
G S+A L+ N + + F G +SL+L + ISR+G
Sbjct: 64 GSSTAHLDWVPPPNAIPTVTAGDGSDRKPYTPIPGSYARFHGTISLELPTDRR-EISRTG 122
Query: 96 FCGMRSKKFD------GFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQ 149
+ G R+ G D+D Y +AM++K D R Y + TE+ V + Q
Sbjct: 123 YAGFRTLDRPPTIFGRGLWDIDPYAYLAMRVKTDARSYFVNVRTESVVPL------DLHQ 176
Query: 150 SFVFVPKD-NWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSG 208
+FV K W I ++ T G VI+ + M +V+ + S K+G
Sbjct: 177 HRLFVKKPGQWETVLIKWNDFVRTNHGKVIEPQTGMLRQKVLSIGFSTTDR------KAG 230
Query: 209 PGDFRVEVDW 218
P + VE W
Sbjct: 231 PYELCVERLW 240
>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo
sapiens GN=NDUFAF1 PE=1 SV=2
Length = 327
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
L E++ + ++ F KE+L KW + SD GG S L++ + N + + G LS +
Sbjct: 113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170
Query: 83 LSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTIYTENW 136
+ + +RSG+C M S+ G D ++T+ ++++GDGR ++ I +
Sbjct: 171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTD 228
Query: 137 VNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLS 195
Q+ + + F+F W KIP +++ + RG + D + E+ ++ + +
Sbjct: 229 FF---QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFT 285
Query: 196 VNAEGGVPGAKSGPGDFRVEVDWI 219
+ A G F +E+D+I
Sbjct: 286 L--------ADKVDGPFFLEIDFI 301
>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial
OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
L E++ + ++ F KE+L KW + SD GG S L++ + N + + G LS +
Sbjct: 113 LREVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170
Query: 83 LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTIYTENW 136
+ +RSG+C M S+ F+ + D ++T+ ++++GDGR ++ I +
Sbjct: 171 APHDGE--STRSGYCAMISRIPRGAFERKVSYDWSQFNTLYLRVRGDGRPWMVNIKEDTD 228
Query: 137 VNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLS 195
Q+ + + F+F W KIP +++ + RG + D + E+ ++ + +
Sbjct: 229 FF---QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFT 285
Query: 196 VNAEGGVPGAKSGPGDFRVEVDWI 219
+ A G F +E+D+I
Sbjct: 286 L--------ADKVDGPFFLEIDFI 301
>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus
musculus GN=Ndufaf1 PE=2 SV=2
Length = 328
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 28/207 (13%)
Query: 23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
L+E++ R ++ F KE+L KW + SD GG S L++ S N + + G LS
Sbjct: 114 LQEVIMEQARVVWQFREKEDLDKWIVTSDKTIGGRSEIFLKM--SKNNRSALLYGTLS-- 169
Query: 83 LSEGSKWNISR-SGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTIYTEN 135
SE + SR SG+C M S+ F+ + D ++T+ ++++GDGR ++ I +
Sbjct: 170 -SEPPQDGDSRQSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNIRQDT 228
Query: 136 WVNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRV--VGM 192
Q+++ + F+F W KIP +++ + +G V D + + ++ +G
Sbjct: 229 EFI---QRKNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQGRVRDVQGPLVLDKISSIGF 285
Query: 193 SLSVNAEGGVPGAKSGPGDFRVEVDWI 219
+LS +G F +E+D+I
Sbjct: 286 TLSDKVDGP----------FFLEIDFI 302
>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3
SV=1
Length = 340
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 32 RYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWN 90
R + F+++E+L W + DS++ G S+ SL ++ G +FSGN+S + + +
Sbjct: 134 RVDYRFDTQEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTA---VFSGNISTKVLKDGR-- 188
Query: 91 ISRSGFCGMRSKKFDGFIDLD------SYDTIAMKLKGDGRCYISTIYTENWVNSPGQQE 144
+ R+G+ M+ + F ++ + +K++GDGR Y + ++SP
Sbjct: 189 VERAGWASMKLEDRKAFNRKKFLSKWRNFSHLLLKVRGDGRSY------KIMLHSPLSM- 241
Query: 145 DNSWQSFVFVPKDN-----WYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAE 199
D +W P W KIP +++ T G + D + +N L +
Sbjct: 242 DFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVAGRIQDRQYRVN--------LEDTSS 293
Query: 200 GGVPGAKSGPGDFRVEVDWI 219
G+ GDFR+E+D+I
Sbjct: 294 IGIVLMDRIDGDFRLEIDYI 313
>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis briggsae GN=CBG11538
PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 32 RYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWN 90
R + F++ E+L W + DS++ G S+ SL ++ G +FSGN+S + + +
Sbjct: 134 RVEYKFDTSEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTA---VFSGNISTRVLKDGR-- 188
Query: 91 ISRSGFCGMR---SKKFDGFIDLD---SYDTIAMKLKGDGRCYISTIYTENWVNSPGQQE 144
+ R+G+ M+ K F+ L ++ + +K++GDGR Y + ++SP
Sbjct: 189 VERAGWASMKLEDRKTFNRKKFLSKWRNFSHLLLKVRGDGRSY------KIMLHSPLSM- 241
Query: 145 DNSWQSFVFVPKDN-----WYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAE 199
D +W P W KIP +++ T G + D + +N L +
Sbjct: 242 DFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVAGRIQDRQYRVN--------LEDTSS 293
Query: 200 GGVPGAKSGPGDFRVEVDWI 219
G+ GDF++E+D+I
Sbjct: 294 IGIVLMDRIDGDFKLEIDYI 313
>sp|O14297|YF1F_SCHPO Uncharacterized protein C9E9.15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC9E9.15 PE=3 SV=2
Length = 219
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 94 SGFCGMRSKKFDGFIDLDSYDTIAMKL-KGDGRCYISTI--YTENWVNSPGQQEDNSWQS 150
+GFC + D +L + I + + K D Y I ++W S + +
Sbjct: 58 AGFCSQATNIKDRTWNLKEFKGIELDIAKSDSYKYTFIIKDCHQDWETSDEKSSLSYEYD 117
Query: 151 FVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPG 210
F + + IP + + PT+RG ++ E++ S++ S+ + + S G
Sbjct: 118 FTPIYSKEDQVVSIPFSEFKPTYRGRPVEGAPELDVSKITQFSIMIRS-----FFNSQSG 172
Query: 211 DFRVEVDWIKALRSELP 227
D+ + ++ I+A+ +P
Sbjct: 173 DYELVLNSIRAIPKNVP 189
>sp|A7A0P0|SDC25_YEAS7 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SDC25 PE=3 SV=2
Length = 1252
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I N + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---NYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|B3LTF3|SDC25_YEAS1 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SDC25 PE=3 SV=1
Length = 1252
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I N + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---NYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|B5VMS9|SDC25_YEAS6 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=SDC25 PE=3 SV=1
Length = 1265
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I N + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---NYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|P0CF32|SDC25_YEASX Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
GN=SDC25 PE=1 SV=1
Length = 1253
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L +LM P + +I N + ELK H + G+ + L
Sbjct: 1060 RLEKTWQAVIPQT-RDLLQSLNKLMDPKKNFI---NYRNELKSLHSAPCVPFFGVYLSDL 1115
Query: 63 EITESGN 69
T+SGN
Sbjct: 1116 TFTDSGN 1122
>sp|P0CF34|YL017_YEAST Putative guanine nucleotide exchange factor YLL017W
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YLL017W PE=5 SV=1
Length = 1048
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L +LM P + +I N + ELK H + G+ + L
Sbjct: 855 RLEKTWQAVIPQT-RDLLQSLNKLMDPKKNFI---NYRNELKSLHSAPCVPFFGVYLSDL 910
Query: 63 EITESGN 69
T+SGN
Sbjct: 911 TFTDSGN 917
>sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3
Length = 2925
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 9 QASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITES- 67
Q +++ R +T +L+ + PP RY F + SD + L S+ L I E+
Sbjct: 2179 QVTIDRFNRKVTVDLQPVWPPVSRYGFRIEDTGHMYMILTPSDIQIQWLHSSGLMIVEAS 2238
Query: 68 ------GNGMNGIFSGNLSLDLS 84
G+G+ GI G+ + DL+
Sbjct: 2239 KTSKAQGHGLCGICDGDAANDLT 2261
>sp|C8ZCV7|SDC25_YEAS8 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=SDC25 PE=3
SV=1
Length = 1252
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I + + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---DYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|A8G7J4|PYRG_PROM2 CTP synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=pyrG
PE=3 SV=1
Length = 536
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 83 LSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTE 134
++EG K +S GFCG+ K +D DS ++ + LK +G C + Y E
Sbjct: 217 INEGLKKKLS--GFCGVNIKSVIEALDADSIYSVPLALKKEGLCKETLKYLE 266
>sp|B2VEL5|Y1831_ERWT9 UPF0061 protein ETA_18310 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=ETA_18310 PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 60 ASLEITESGNGMNGIFSGNLSLDLSEGSKW-----NISRSGFCGMRSKKFDGFIDLDSYD 114
A L + N I +G LSL EGS + +S+S +RS D FID D++D
Sbjct: 330 AKLGLLTPAKDDNNILTGLLSLMTKEGSDYTRTFRQLSQSEQLQLRSPMRDEFIDRDAFD 389
Query: 115 T 115
+
Sbjct: 390 S 390
>sp|A6LVY2|Y2352_CLOB8 UPF0210 protein Cbei_2352 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=Cbei_2352 PE=3 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 41 EELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
+ +KK + + S GGLS A + ++E ++ + SG+L+L+ EG
Sbjct: 311 DAVKKGGVMACSHVGGLSGAFIPVSEDAGMIDAVISGSLNLEKLEG 356
>sp|Q3ATN3|SYA_CHLCH Alanine--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=alaS PE=3 SV=1
Length = 886
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 85 EGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQE 144
+G+KW F +R+ +F G+ L TI +G+G+ + T + S GQ
Sbjct: 445 DGAKWQ----WFSDVRASQFVGYDHLVHSATITGIRQGNGKLLLVLDATPFYAESGGQTG 500
Query: 145 DNSW 148
DN W
Sbjct: 501 DNGW 504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,393,963
Number of Sequences: 539616
Number of extensions: 4014122
Number of successful extensions: 8126
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8101
Number of HSP's gapped (non-prelim): 25
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)