Query 027018
Match_columns 229
No_of_seqs 115 out of 518
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08547 CIA30: Complex I inte 100.0 3E-45 6.5E-50 299.3 17.5 157 35-216 1-157 (157)
2 KOG2435 Uncharacterized conser 100.0 2.5E-42 5.4E-47 296.1 17.9 194 18-226 99-304 (323)
3 PF03425 CBM_11: Carbohydrate 99.4 6.9E-12 1.5E-16 104.4 16.0 158 30-224 3-170 (178)
4 PF04620 FlaA: Flagellar filam 82.3 29 0.00064 29.9 11.4 100 114-225 108-210 (217)
5 PF01562 Pep_M12B_propep: Repr 39.7 1.4E+02 0.0031 22.7 6.7 63 111-180 26-88 (131)
6 PF13049 DUF3910: Protein of u 37.9 90 0.002 22.7 4.7 50 111-168 22-76 (93)
7 PHA01795 hypothetical protein 28.7 3.8E+02 0.0082 24.2 8.2 15 158-172 153-167 (280)
8 COG2871 NqrF Na+-transporting 22.7 4.1E+02 0.0088 24.5 7.2 98 72-172 145-272 (410)
9 COG1791 Uncharacterized conser 19.7 3.7E+02 0.0079 22.6 5.9 39 122-160 113-159 (181)
10 KOG0419 Ubiquitin-protein liga 17.4 1.2E+02 0.0026 24.4 2.5 38 188-228 32-69 (152)
No 1
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=100.00 E-value=3e-45 Score=299.26 Aligned_cols=157 Identities=34% Similarity=0.720 Sum_probs=145.4
Q ss_pred EecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccccCcceeEeeecCCCCCCCCCCCC
Q 027018 35 FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYD 114 (229)
Q Consensus 35 ~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~~~~dls~y~ 114 (229)
|+|++++++++|++++|.||||.|+|++.+.+++ .+++|+|+|+++ |+||||++|+.....++||+.|+
T Consensus 1 f~F~~~~~~~~W~~~~D~vmGG~S~~~~~~~~~~--~~~~F~G~ls~~---------~~~GFa~~r~~~~~~~~dls~y~ 69 (157)
T PF08547_consen 1 FDFNSPQDLENWRVVSDTVMGGVSTASLEFSPED--GSAVFSGNLSTE---------NNGGFASVRTPSFPSPLDLSGYD 69 (157)
T ss_pred CcCCCChhhCCeEEEcceEeCCeEEEEEEEECCC--CEEEEEEEEecC---------CCCceEEEEEccCCCcCCCCCCc
Confidence 6899999999999999999999999999997532 369999999999 89999999994445789999999
Q ss_pred eEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceeeccccccCCCCCCCccCeeEEEE
Q 027018 115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSL 194 (229)
Q Consensus 115 gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~~rG~~~~~~~~l~~~~I~~ig~ 194 (229)
||+|+||||||+|+++|++++. .+...|++.+.+++++|++|+|||++|+|++||++++++++||+++|++|||
T Consensus 70 ~l~l~vrgdGr~Y~~~l~~~~~------~~~~~y~~~f~t~~~~w~~v~iPFs~F~~~~rG~~v~~~~~l~~~~I~~ig~ 143 (157)
T PF08547_consen 70 GLELRVRGDGRTYKVNLRTDND------EPSDSYQARFQTPPGEWQTVRIPFSDFVPTFRGRPVDDAPPLDPSRIRSIGF 143 (157)
T ss_pred EEEEEEEcCCceEEEEEEeCCC------CCCceEEEEEeccCCccEEEEEEHHHCceeeCCcccCCCCCcChHHceEEEE
Confidence 9999999999999999999976 2579999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCcCCeeEEEEE
Q 027018 195 SVNAEGGVPGAKSGPGDFRVEV 216 (229)
Q Consensus 195 ~~~~~~g~~~~~~~~G~F~LeI 216 (229)
++.+ +++|||+|+|
T Consensus 144 ~~~~--------~~~G~F~L~I 157 (157)
T PF08547_consen 144 MISD--------KQEGPFELEI 157 (157)
T ss_pred EEec--------CCCCCEEEeC
Confidence 9996 9999999997
No 2
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-42 Score=296.12 Aligned_cols=194 Identities=34% Similarity=0.656 Sum_probs=178.7
Q ss_pred hhcccccccCC------CCccEEEecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccc
Q 027018 18 ALTWNLEELMP------PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNI 91 (229)
Q Consensus 18 ~~~~~~~~l~p------~~~~~l~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~l 91 (229)
++.|+.++-.| ++.+.+|+|++++++..|++.+|...||.|+|.+++.+. |++++|+|++|++.|+++ .+
T Consensus 99 kl~w~~eE~~pllevr~~eakvvf~F~~kEdLdkWtv~sDsd~gG~StasLe~sd~--G~~alf~G~~ss~~~kdg--~i 174 (323)
T KOG2435|consen 99 KLHWRGEEGHPLLEVRLEEAKVVFQFRGKEDLDKWTVTSDSDIGGRSTASLEMSDN--GQSALFYGTLSSEAPKDG--EI 174 (323)
T ss_pred HHHhccccCccceeecCCcceEEEEccChhhcceeEeecccccCCeeeEEEEecCC--CcceeeccccccccccCc--ce
Confidence 67798887777 889999999999999999999999999999999999765 557999999999999987 58
Q ss_pred cCcceeEeeecC---CC--CCCCCCCCCeEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCC-CeEEEEEe
Q 027018 92 SRSGFCGMRSKK---FD--GFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKD-NWYIAKIP 165 (229)
Q Consensus 92 n~gGFasvr~~~---~~--~~~dls~y~gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g-~W~tv~iP 165 (229)
+++|||+||+++ |. ..+|++.|+-|.||||||||.|+++|+++++++ ..++++|++++||++| .||.++||
T Consensus 175 ~RsGyc~Mrs~~RkaF~rk~~~dw~qfn~L~LrvRGDGRsy~inihte~~~d---q~wndsys~flft~gGp~wq~~KIP 251 (323)
T KOG2435|consen 175 TRSGYCAMRSRPRKAFERKMSYDWSQFNTLYLRVRGDGRSYMINIHTETDFD---QRWNDSYSYFLFTRGGPYWQEVKIP 251 (323)
T ss_pred eeeeeeeeeccchhhhcceecccccccceEEEEEecCCceEEEEecCccchh---hhcccceeeEEecCCCCceeEEecc
Confidence 999999999954 42 456788899999999999999999999999986 4789999999999988 99999999
Q ss_pred CCCceeeccccccCCCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEecCC
Q 027018 166 LARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSEL 226 (229)
Q Consensus 166 Fs~F~~~~rG~~~~~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~~~ 226 (229)
|+.|.++++||+++.|.+|++.+|.+|||.+++ +..|||.||||+|+++.++.
T Consensus 252 fSKff~t~kGriqDrq~e~nl~~vssig~sl~d--------k~dGpF~LEIDfIGv~~d~~ 304 (323)
T KOG2435|consen 252 FSKFFFTNKGRIQDRQHELNLDKVSSIGFSLAD--------KVDGPFFLEIDFIGVFTDPA 304 (323)
T ss_pred hhhheeccccceeecccccCccceeeEeEEEee--------ccCCcceeeEEEEEEecCCC
Confidence 999999999999999999999999999999998 89999999999999998875
No 3
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=99.43 E-value=6.9e-12 Score=104.39 Aligned_cols=158 Identities=20% Similarity=0.290 Sum_probs=84.3
Q ss_pred CccEEEecCCccc----ccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccccCcceeEeeecCCC
Q 027018 30 SERYIFNFNSKEE----LKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFD 105 (229)
Q Consensus 30 ~~~~l~~F~~~~~----~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~ 105 (229)
...+|.||.+... ...|...+|...++.++..- +. .+.++.++.. .. ..++++++....
T Consensus 3 ~~~~IDDFE~~~~~~~l~~~w~s~~~~~~~~~~~~~~---~~-~~~~l~~~y~-~~----------~~~~~~~v~~~l-- 65 (178)
T PF03425_consen 3 PPLLIDDFEDYDGDNALQGAWYSYNDDGPGLSLTISD---PD-GGKALAISYD-GG----------GSGGWAGVTKDL-- 65 (178)
T ss_dssp SEEEEE-SSSS----------EEEEETT-EEEEEEEE----S-SSEEEEEEEE-------------SS-EEEEE-EE---
T ss_pred ccceeEcccCCCCccceeeeeeccCCCCceeEEEeeC---CC-CCcEEEEEEe-cC----------CCCceEEEecCC--
Confidence 4578999987643 24798888876554444333 22 2334566665 22 368888886665
Q ss_pred CCCCCCCCCeEEEEEeecC--cEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceee---c-cccccC
Q 027018 106 GFIDLDSYDTIAMKLKGDG--RCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPT---W-RGNVID 179 (229)
Q Consensus 106 ~~~dls~y~gi~lrvrGDG--r~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~---~-rG~~~~ 179 (229)
..-|+|.|+||.|.+|+|| ++..|.|+... ....|.+. ++...+|++|+|||++|.+. . -|..
T Consensus 66 ~~~DwS~~~gl~Fw~k~dgs~~~l~vqi~d~~--------~~e~~~~~-~~~~~~W~~V~IPF~~f~~~~~~~p~g~~-- 134 (178)
T PF03425_consen 66 DPGDWSGYGGLSFWIKGDGSGNKLRVQIKDGG--------DYEYWEAS-FTDSSTWKTVEIPFSDFTQRPDYQPGGWG-- 134 (178)
T ss_dssp S----TT--EEEEEEEE------EEEEEEEE---------EEEEEEEE-E---SS-EEEEEEGGG-EE--S---TT----
T ss_pred CcCCcccCCcEEEEEEcCCCCcEEEEEEecCC--------cceeeEee-cCCCCcCEEEEEEHHHcccccccCCCCCC--
Confidence 4569999999999999665 66666666653 12446554 44444599999999999971 1 1111
Q ss_pred CCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEec
Q 027018 180 AEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS 224 (229)
Q Consensus 180 ~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~ 224 (229)
...+||+.+|.+|.|.+. .-.+++.|.||.|++|..
T Consensus 135 ~~~~ldl~~v~~~~~~~~---------~~~~~~~~~iDdI~l~~~ 170 (178)
T PF03425_consen 135 ADGTLDLTNVWEFAFYVN---------GGGGAGTFYIDDIRLYGA 170 (178)
T ss_dssp --SS--TTSEEEEEEEES---------SS---EEEEEEEEEEE-B
T ss_pred cccccChHHcEEEEEEEc---------CCCceeEEEEEeEEEEeC
Confidence 134789999999999885 334459999999999954
No 4
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=82.29 E-value=29 Score=29.94 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=70.7
Q ss_pred CeEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEE-cCCCCeEEEEEeCCCceeeccccccCCC--CCCCccCee
Q 027018 114 DTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVF-VPKDNWYIAKIPLARYLPTWRGNVIDAE--MEMNPSRVV 190 (229)
Q Consensus 114 ~gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~-t~~g~W~tv~iPFs~F~~~~rG~~~~~~--~~l~~~~I~ 190 (229)
+.|.+-|.|+|..|.|.+.-.+. .+..++..+= ..-..|+.+..+.-...+..|-+.+... .+.....|+
T Consensus 108 k~I~vWV~G~n~~h~L~v~lrD~-------~G~~~~l~~G~L~f~GWK~L~~~iP~~ip~~r~r~~q~~~~yp~~~~~l~ 180 (217)
T PF04620_consen 108 KSISVWVYGDNYPHWLEVLLRDA-------KGEVHQLPLGSLNFDGWKNLTVNIPPYIPDVRNRILQQYPRYPRSDPGLK 180 (217)
T ss_pred EEEEEEEECCCCCceEEEEEEcC-------CCCEEEEEeeeecCCceeEEEEECCCCCCccceeeeeecccCCCCCCceE
Confidence 56778889999888887777654 3455664431 2223599999999999997665554322 233444578
Q ss_pred EEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEecC
Q 027018 191 GMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225 (229)
Q Consensus 191 ~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~~ 225 (229)
=.||.+.. .+....|+|-+-+|.+++.-+.
T Consensus 181 f~gfrI~~-----dp~~~~g~f~iYfDdlkv~tD~ 210 (217)
T PF04620_consen 181 FVGFRIDR-----DPDERGGDFYIYFDDLKVLTDK 210 (217)
T ss_pred EEEEEEEC-----ChhhcCCCEEEEEeeeEEEEEE
Confidence 88888876 3457789999999999998664
No 5
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family). The propeptide contains a sequence motif similar to the "cysteine switch" of the matrixins, which mediate cell-cell or cell-matrix interactions.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis
Probab=39.66 E-value=1.4e+02 Score=22.73 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCCCeEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceeeccccccCC
Q 027018 111 DSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDA 180 (229)
Q Consensus 111 s~y~gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~~rG~~~~~ 180 (229)
..-..+.++++..|+.|.|.|+.+...-+ ..+........|.. +...|...=.-.|+|.+...
T Consensus 26 ~~~~~~~~~~~a~g~~~~L~L~~n~~l~~------~~~~v~~~~~~g~~-~~~~~~~~~~c~Y~G~V~g~ 88 (131)
T PF01562_consen 26 DHPSHLSYSFRAFGREFHLDLEPNHSLFS------PGFVVEVRNEDGTR-EESSPSHQEHCHYQGHVEGD 88 (131)
T ss_pred CCCceEEEEEEECCEEEEEEEEECCcccC------CCCEEEEEcccccc-cccCCccccceEEEeeeCCC
Confidence 55678999999999999999999765432 33554444555543 55666555555678886543
No 6
>PF13049 DUF3910: Protein of unknown function (DUF3910)
Probab=37.92 E-value=90 Score=22.73 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=28.8
Q ss_pred CCCCe--EEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEE-cCCC--CeEEEEEeCCC
Q 027018 111 DSYDT--IAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVF-VPKD--NWYIAKIPLAR 168 (229)
Q Consensus 111 s~y~g--i~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~-t~~g--~W~tv~iPFs~ 168 (229)
-.|++ |.+.+..|..+|++.+.... .+.-|...-+ +++| .---|.|||.+
T Consensus 22 vtyda~~idfsl~~ddnryklivlk~e--------~~~hyk~vqyg~kpgsqkpfpidipf~~ 76 (93)
T PF13049_consen 22 VTYDATSIDFSLENDDNRYKLIVLKHE--------ENTHYKFVQYGIKPGSQKPFPIDIPFEQ 76 (93)
T ss_pred ceeeeeEEEEEeccCCCeEEEEEEecc--------CcceeEEEEeccCcCCCCCccccccchh
Confidence 34554 55567899999998876642 2333443222 3444 33467777764
No 7
>PHA01795 hypothetical protein
Probab=28.73 E-value=3.8e+02 Score=24.15 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=11.9
Q ss_pred CeEEEEEeCCCceee
Q 027018 158 NWYIAKIPLARYLPT 172 (229)
Q Consensus 158 ~W~tv~iPFs~F~~~ 172 (229)
+++|++|||..=+|+
T Consensus 153 ~FeT~eLPfgEsi~~ 167 (280)
T PHA01795 153 TLRTAELPFGETKPK 167 (280)
T ss_pred EEEEEccccccCCCC
Confidence 478999999876665
No 8
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=22.66 E-value=4.1e+02 Score=24.52 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=60.5
Q ss_pred EEEEEEEEecccCCCCcccccCcceeEeeecCCC-----------CCCCCCCCCeEEEEEeecC---c------------
Q 027018 72 NGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFD-----------GFIDLDSYDTIAMKLKGDG---R------------ 125 (229)
Q Consensus 72 ~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~-----------~~~dls~y~gi~lrvrGDG---r------------ 125 (229)
.|+|--+|.+.+|+..+.--.-|||.++..+... -.-|++.|+=.+...+-|. |
T Consensus 145 ~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~g 224 (410)
T COG2871 145 KATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKG 224 (410)
T ss_pred hhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcC
Confidence 4899999999999887666688999999987621 0235556655554444332 2
Q ss_pred EEEEEEEecCCcCCCCCCCCCceE---EEEE-cCCCCeEEEEEeCCCceee
Q 027018 126 CYISTIYTENWVNSPGQQEDNSWQ---SFVF-VPKDNWYIAKIPLARYLPT 172 (229)
Q Consensus 126 ~Y~~~l~~~~~~~~~~~~~~~~yq---~~~~-t~~g~W~tv~iPFs~F~~~ 172 (229)
.-++|+|-.+-..+ .++..|- .+++ .++|.=.||.=||-.|..-
T Consensus 225 iI~~NvRIAtPPp~---~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaK 272 (410)
T COG2871 225 IIKLNVRIATPPPR---NPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAK 272 (410)
T ss_pred eEEEEEEeccCCCC---CCCCCccceeeeEEeecCCCeEEEeccchhhhhc
Confidence 33566665432211 1122221 2333 4577778999999998764
No 9
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=19.74 E-value=3.7e+02 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=23.8
Q ss_pred ecCcEEEEEEEecCCcCCCCC-------CCCCceEE-EEEcCCCCeE
Q 027018 122 GDGRCYISTIYTENWVNSPGQ-------QEDNSWQS-FVFVPKDNWY 160 (229)
Q Consensus 122 GDGr~Y~~~l~~~~~~~~~~~-------~~~~~yq~-~~~t~~g~W~ 160 (229)
.||+.|.+.....++.-.|.. ..+..+.| ++|+.+..|.
T Consensus 113 ~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~gWV 159 (181)
T COG1791 113 PDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPEGWV 159 (181)
T ss_pred CCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCCCce
Confidence 567889888888777654421 22333444 4567766673
No 10
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=17.35 E-value=1.2e+02 Score=24.36 Aligned_cols=38 Identities=11% Similarity=0.305 Sum_probs=27.8
Q ss_pred CeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEecCCCC
Q 027018 188 RVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSELPV 228 (229)
Q Consensus 188 ~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~~~~~ 228 (229)
+|-.....|. |..+...+.|.|+|.|+.-.-|+...|+
T Consensus 32 niM~W~a~I~---Gp~~tp~e~gtFkLtl~FteeYpnkPP~ 69 (152)
T KOG0419|consen 32 NIMEWNAVIF---GPQDTPFEGGTFKLTLEFTEEYPNKPPT 69 (152)
T ss_pred ceeeeeeeEE---cCCCCCcCCceEEEEEEcccccCCCCCe
Confidence 4544555553 4444457889999999999999988885
Done!