BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027019
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 295 bits (755), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/222 (62%), Positives = 166/222 (74%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
++LKE N ++K+YGVEP ESA+L+GG+ G H IQGI
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGI 226
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 138/222 (62%), Positives = 166/222 (74%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
++LKE N ++K+YGVEP ESA+L+GG+ G H IQGI
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGI 224
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 293 bits (749), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 137/222 (61%), Positives = 165/222 (74%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSV DRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
++LKE N ++K+YGVEP ESA+L+GG+ G H IQGI
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGI 226
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 283 bits (725), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 132/226 (58%), Positives = 163/226 (72%)
Query: 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA IAAKLE MEPC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G I+PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXX 182
A TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288
Query: 183 XXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
RF+KE NP +V GVEP+ES +L+GG+ G H IQGI
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 155/221 (70%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+KDR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS S+ERR+ +RA GAE+IL D A
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQG 227
++LK NP++K+YGVEPSES VLNGG+ G H I G
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITG 245
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 252 bits (644), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 154/221 (69%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+ DR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS S+ERR+ +RA GAE+IL D A
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQG 227
++LK NP++K+YGVEPSES VLNGG+ G H I G
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITG 245
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 134/223 (60%), Gaps = 1/223 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
++ +QFENPANP IH TT E+W+D+ GKVD ++
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
+ +KE P + VEP+ S VL+GGQ+G H IQGI
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGI 226
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 196 bits (498), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I ++T+LIG TP+V L V DG A + AKLE+ P S+KDRI +MI AE GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
P T ++E TSGNTG+ LA ++AARGY ++ MP T S+ERR++LRA GAE++L A
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA-E 124
Query: 127 FXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
T D Y + +QFENPANP +H TT E+W+D+ GKVD F+S
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
+ +K+ P + VEP+ S VL+GGQ+G H IQGI
Sbjct: 185 GTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGI 227
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 196 bits (498), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 133/223 (59%), Gaps = 1/223 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SV DRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
++ +QFENPANP IH TT E+W+D+ GKVD ++
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
+ +KE P + VEP+ S VL+GGQ+G H IQGI
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGI 226
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 134/223 (60%), Gaps = 3/223 (1%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I ++ +LIG TP+V L V DG A + AKLE+ P S+KDRI +MI AE GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
P T ++E TSGNTG+ LA ++AARGY ++ MP T S+ERR++LRA GAE++L A
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA-E 124
Query: 127 FXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
T D Y + +QFENPANP +H TT E+W+D+ GKVD F+S
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
+ +K+ P + VEP+ S VL+GGQ+G H IQGI
Sbjct: 185 GTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGI 227
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 139/219 (63%), Gaps = 4/219 (1%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+TELIG+TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXX 130
++E TSGNTG+GLA +AAA+GY ++VMP T S+ERR +LRA GAE++L A
Sbjct: 68 -IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 131 XXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXX 189
GY + +QF+N ANP+IH TTG EI + G ++DAF++
Sbjct: 127 IAKAEELVRE--HGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTIT 184
Query: 190 XXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
+ L+E P+IK+Y VEP++S VL+GG+ G H IQGI
Sbjct: 185 GAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGI 223
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 134/215 (62%), Gaps = 2/215 (0%)
Query: 15 IGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK-TTLI 73
IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG ++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGNTG+GLA IAA+RGY LI+ MP+ S ER+ VL+A GAE++L D R
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
++ QF+NPAN + HYETTGPE+++ G++DAF+ R
Sbjct: 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 194 FLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
+LKE P +KV VEP+ S VL+GG+ G+H QG+
Sbjct: 186 YLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGM 220
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 1/222 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE +G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
P+ L QF N IH ETTGPEIW+ + VD FI+
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
R LK+ ++ VEP ES VL+GG+ G H IQGI
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGI 252
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 1/222 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SV DR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
P+ L QF N IH ETTGPEIW+ + VD FI+
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
R LK+ ++ VEP+ES VL+GG+ G H IQGI
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGI 231
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 137/231 (59%), Gaps = 13/231 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V LN + +G RI AK+E+ P SVK RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK--ENNPDIKVYGVEPSESAVLNGG------QRGKHLIQGI 228
R++K + D+ VEP++S V+ + G H IQGI
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGI 229
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 136/231 (58%), Gaps = 13/231 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V LN + +G RI AK+E+ P SV RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK--ENNPDIKVYGVEPSESAVLNGG------QRGKHLIQGI 228
R++K + D+ VEP++S V+ + G H IQGI
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGI 229
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 116/208 (55%), Gaps = 2/208 (0%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SVKDR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE-QGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQR 220
RF++E + + + G++P E + + G +R
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRR 211
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 116/208 (55%), Gaps = 2/208 (0%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SV DR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NPK HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQR 220
F++E + + + G++P E + + G +R
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPGIRR 211
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 114/208 (54%), Gaps = 2/208 (0%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + I KLE P SVKDR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE-QGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIW+ + G++ F+S
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQR 220
RFL+E + + G++P E + + G +R
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRR 211
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 116/208 (55%), Gaps = 2/208 (0%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SV DR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQR 220
RF++E + + + G++P E + + G +R
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRR 211
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 122/216 (56%), Gaps = 9/216 (4%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
LIG+TP+V L D +RI KLE P SVKDR A MI DAE +GL+ K ++
Sbjct: 5 LIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 57
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 58 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 117
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
T ++L QFENP N H TTGPEI + ++DAF++ R
Sbjct: 118 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 176
Query: 194 FLKENNPD-IKVYGVEPSESAVLNGGQRGKHLIQGI 228
LK + +K+ VEP++S VL+GGQ GKH IQGI
Sbjct: 177 VLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGI 212
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 122/216 (56%), Gaps = 9/216 (4%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
LIG+TP+V L D +RI KLE P SVKDR A MI DAE +GL+ K ++
Sbjct: 17 LIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 69
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 129
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
T ++L QFENP N H TTGPEI + ++DAF++ R
Sbjct: 130 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 188
Query: 194 FLKENNPD-IKVYGVEPSESAVLNGGQRGKHLIQGI 228
LK + +K+ VEP++S VL+GGQ GKH IQGI
Sbjct: 189 VLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGI 224
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Query: 10 DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 36 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 95
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
G T +IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ + RF
Sbjct: 96 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 154
Query: 128 XXXXXX---XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 155 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 214
Query: 185 XXXXXXXXRFLKENNPDIKVYGVEP-----SESAVLNGGQRGKHLIQGI 228
R LKE P ++ GV+P +E LN ++ + ++GI
Sbjct: 215 GGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGI 263
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Query: 10 DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 101 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 160
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
G T +IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ + RF
Sbjct: 161 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 219
Query: 128 XXXXXX---XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 220 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 279
Query: 185 XXXXXXXXRFLKENNPDIKVYGVEP-----SESAVLNGGQRGKHLIQGI 228
R LKE P ++ GV+P +E LN ++ + ++GI
Sbjct: 280 GGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGI 328
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 116/225 (51%), Gaps = 6/225 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNV--VDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++DAE++GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
+ PG T+IE TSGNTG+GLA A +GY IIVMP S E+ LR LGA+II +
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 125 LRFXXXX---XXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
+ TP+ +L Q+ N NP HY+ T EI KVD +
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQ 226
R +KE P ++ GV+P S + + K +Q
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 126/231 (54%), Gaps = 11/231 (4%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
AI D + IGNTP+V L + G + K+E P SV RI +M+ AE G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTL 59
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
T GK +++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L LG ++L + A
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 126 RFXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P Y +L+QFENPANP+IH ETTGPEIW+D+ GKVD ++
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 185 XXXXXXXXRFLK-ENNPDIKVYGVEPSESAVLN---GGQR---GKHLIQGI 228
R +K + I VEP ES V++ G+ G H IQGI
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGI 229
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 118/227 (51%), Gaps = 7/227 (3%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 73 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 190
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
LKE IK+ VEP ESAVL G +G H IQGI
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGI 237
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 118/227 (51%), Gaps = 7/227 (3%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 72 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 130
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 131 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 189
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGI 228
LKE IK+ VEP ESAVL G +G H IQGI
Sbjct: 190 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGI 236
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 105/204 (51%), Gaps = 9/204 (4%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 71 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 186 XXXXXXXRFLKENNPDIKVYGVEP 209
RFL+E+ ++K+ EP
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEP 212
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 69 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 186 XXXXXXXRFLKENNPDIKVYGVEP 209
RFL+E+ ++ + EP
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEP 210
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 72 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 186 XXXXXXXRFLKENNPDIKVYGVEP 209
RFL+E+ ++K+ EP
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEP 213
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 33 RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
R+ KLE P S SVKDR A +I + + + + TS N GV L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR---VEKGSLVADATSSNFGVALSAVARLY 167
Query: 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
GY + +P +++ R LGA++I+ A +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVYGV 207
N AN + H T EI+ S G + +L+ +P I+ V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 208 EPSESAVLNGGQR 220
+P++ + G +R
Sbjct: 286 QPAQGDSIPGIRR 298
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 33 RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
R+ KLE P S SV DR A +I + + + + TS N GV L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRR---VEKGSLVADATSSNFGVALSAVARLY 167
Query: 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
GY + +P +++ R LGA++I+ A +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVYGV 207
N AN + H T EI+ S G + +L+ +P I+ V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 208 EPSESAVLNGGQR 220
+P++ + G +R
Sbjct: 286 QPAQGDSIPGIRR 298
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E +P S K R AY+M+ GL
Sbjct: 21 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMA-----GLTE 75
Query: 67 PGKTT-LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
K +I ++GN G+AF +A G +IVMP+ + + +R G E++L
Sbjct: 76 EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
++D A R + TP++ + R+ K E ++ S K R A S
Sbjct: 4 LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALS------ 57
Query: 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119
K L L+ V+SGN G+A+ A G ++VMP S ++ RA GAE++
Sbjct: 58 -KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I P + ER + LGAE I+ D
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
VT L G TP++ N+ I K+E + P S KDR + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILAD 122
++ ++GNT A AA G +++P +M + GA+II D
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLIT---PGK-TTLIEVTSGNTGVGLAFIAAARG 92
K E + S K R A + I+ GLI GK ++ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAIR-----GLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEG 99
Query: 93 YNLIIVMPSTCSMERRIVLRALGAEIILAD 122
IV+P T +++ ++A GA I+ ++
Sbjct: 100 IPAYIVVPQTAPNCKKLAIQAYGASIVYSE 129
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96
K E + S K R A + ++ L K + +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IVMPSTCSMERRIVLRALGAEIILAD 122
IV+P T +++ ++A GA I+ +
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCE 129
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
+SGN G L + A G IV+P T +++ ++A GA I+ +
Sbjct: 83 SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCE 129
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 37 KLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARG 92
K E + S R AY+M+ ++ DKG+IT ++GN G+A A +
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREELDKGVIT--------ASAGNHAQGVAL--AGQR 129
Query: 93 YNLI--IVMPSTCSMERRIVLRALGAEIIL 120
N + IVMP+T + +RALG +++L
Sbjct: 130 LNCVAKIVMPTTTPQIKIDAVRALGGDVVL 159
>pdb|2DQL|A Chain A, Crytal Structure Of The Circadian Clock Associated
Protein Pex From Anabaena
pdb|2DQL|B Chain B, Crytal Structure Of The Circadian Clock Associated
Protein Pex From Anabaena
Length = 115
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 10 DVTELIGNTPMVYLNNVVDGCV------------ARIAAKLETMEPCSSVKDRIAYSMIK 57
D+ + N P YL V C + +LET P + D + YS IK
Sbjct: 5 DIYQFFENPPPTYLCQEVAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIK 64
Query: 58 DAEDKGLIT 66
ED IT
Sbjct: 65 FLEDNRAIT 73
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 41 MEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97
ME +++R+ ++ IKD E+ G + G ++ V S N G + I A + +L +
Sbjct: 267 MERLRGLRNRL-WNGIKDIEEVYLNGDLEHGAPNILNV-SFNYVEGESLIMALK--DLAV 322
Query: 98 VMPSTC---SMERRIVLRALGAEIILADSALRF 127
S C S+E VLRALG LA S++RF
Sbjct: 323 SSGSACTSASLEPSYVLRALGLNDELAHSSIRF 355
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 41 MEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97
ME +++R+ ++ IKD E+ G + G ++ V S N G + I A + +L +
Sbjct: 286 MERLRGLRNRL-WNGIKDIEEVYLNGDLEHGAPNILNV-SFNYVEGESLIMALK--DLAV 341
Query: 98 VMPSTC---SMERRIVLRALGAEIILADSALRF 127
S C S+E VLRALG LA S++RF
Sbjct: 342 SSGSACTSASLEPSYVLRALGLNDELAHSSIRF 374
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 12/210 (5%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+ + TP++ + V VA + K E + + K R A + + + K
Sbjct: 20 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE----AQRKA 75
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXX 130
++ +SGN +A A G I+MP + + G ++I+ D R+
Sbjct: 76 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYD---RYKDD 132
Query: 131 XXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXX 190
++ +++P + T E++++ G +DA
Sbjct: 133 REKMAKEISEREGLTIIPPYDHP-HVLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSG 190
Query: 191 XXRFLKENNPDIKVYGVEPSESAVLNGGQR 220
+ P+ +VYGVEP N GQ+
Sbjct: 191 SALAARHFAPNCEVYGVEPEAG---NDGQQ 217
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA 113
+G + PG++ LI SG G IA +RG V + S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR---VFTTVGSAEKRAYLQA 1710
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAA 89
I PG+ +IE++ G +G+GL+ +
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIVGG 37
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAY---SMIK 57
+ED K+ + I T M N + C I K E M+ S R A+ S +
Sbjct: 24 IEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLT 83
Query: 58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP---------STCSMERR 108
+AE + ++ ++GN G++ A G + +VMP +TC
Sbjct: 84 EAEKR-------KGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAE 136
Query: 109 IVLR 112
+VL
Sbjct: 137 VVLH 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,258,081
Number of Sequences: 62578
Number of extensions: 214103
Number of successful extensions: 604
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 60
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)