Query 027019
Match_columns 229
No_of_seqs 145 out of 1185
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 3.3E-58 7.1E-63 387.3 25.8 219 9-229 3-223 (300)
2 PLN03013 cysteine synthase 100.0 7.9E-57 1.7E-61 398.0 27.2 224 6-229 112-335 (429)
3 PLN02565 cysteine synthase 100.0 3.6E-56 7.8E-61 385.4 27.6 223 7-229 5-227 (322)
4 PLN00011 cysteine synthase 100.0 3.4E-55 7.3E-60 380.1 28.3 229 1-229 1-229 (323)
5 PLN02556 cysteine synthase/L-3 100.0 3.5E-55 7.6E-60 384.7 26.1 224 6-229 48-271 (368)
6 TIGR01136 cysKM cysteine synth 100.0 8.5E-53 1.8E-57 361.8 27.5 217 12-229 2-218 (299)
7 PRK11761 cysM cysteine synthas 100.0 6E-53 1.3E-57 361.9 25.4 209 7-217 2-210 (296)
8 KOG1252 Cystathionine beta-syn 100.0 5.3E-54 1.1E-58 360.8 18.0 227 3-229 38-269 (362)
9 TIGR01139 cysK cysteine syntha 100.0 1.8E-52 3.9E-57 359.6 27.4 216 12-229 2-218 (298)
10 TIGR01138 cysM cysteine syntha 100.0 9.1E-52 2E-56 353.7 26.1 205 11-217 2-206 (290)
11 PRK10717 cysteine synthase A; 100.0 5.4E-51 1.2E-55 355.0 27.1 222 7-229 3-237 (330)
12 cd01561 CBS_like CBS_like: Thi 100.0 1E-50 2.2E-55 347.7 27.7 213 16-229 1-215 (291)
13 COG1171 IlvA Threonine dehydra 100.0 5.1E-51 1.1E-55 349.4 20.2 206 5-217 13-218 (347)
14 PLN02356 phosphateglycerate ki 100.0 5.6E-50 1.2E-54 354.2 26.8 208 7-215 43-291 (423)
15 PRK07476 eutB threonine dehydr 100.0 4.5E-50 9.7E-55 348.0 22.4 203 5-216 7-209 (322)
16 PRK08198 threonine dehydratase 100.0 3.9E-50 8.4E-55 358.3 22.6 203 5-216 10-212 (404)
17 PRK08638 threonine dehydratase 100.0 5.6E-50 1.2E-54 348.2 22.9 211 5-224 15-229 (333)
18 TIGR01137 cysta_beta cystathio 100.0 1.3E-49 2.9E-54 359.8 25.7 221 8-229 2-230 (454)
19 PLN02970 serine racemase 100.0 8.8E-50 1.9E-54 346.8 23.3 201 7-216 17-217 (328)
20 PRK08526 threonine dehydratase 100.0 5.7E-50 1.2E-54 355.7 21.3 204 4-216 7-210 (403)
21 PRK12483 threonine dehydratase 100.0 1.5E-49 3.2E-54 361.0 23.2 201 9-217 29-229 (521)
22 TIGR02991 ectoine_eutB ectoine 100.0 5.6E-49 1.2E-53 340.3 23.5 204 4-216 6-209 (317)
23 PRK06382 threonine dehydratase 100.0 3.4E-49 7.5E-54 352.0 22.6 202 5-215 13-214 (406)
24 PRK06110 hypothetical protein; 100.0 4.6E-49 1E-53 341.7 22.3 203 5-216 9-211 (322)
25 PRK07048 serine/threonine dehy 100.0 3.5E-49 7.5E-54 342.5 21.1 203 4-215 11-213 (321)
26 cd06447 D-Ser-dehyd D-Serine d 100.0 1.1E-48 2.4E-53 345.8 23.5 198 15-215 50-286 (404)
27 PRK07334 threonine dehydratase 100.0 2.6E-49 5.7E-54 352.6 19.4 204 4-216 10-213 (403)
28 PRK06352 threonine synthase; V 100.0 7.5E-49 1.6E-53 343.7 21.3 202 8-219 19-226 (351)
29 cd06448 L-Ser-dehyd Serine deh 100.0 1.6E-48 3.5E-53 337.3 22.2 197 17-217 1-200 (316)
30 cd01562 Thr-dehyd Threonine de 100.0 1.7E-48 3.6E-53 335.7 21.5 206 2-216 2-207 (304)
31 TIGR02079 THD1 threonine dehyd 100.0 1.6E-48 3.6E-53 347.5 22.0 204 5-216 4-210 (409)
32 PLN02550 threonine dehydratase 100.0 1.8E-48 3.9E-53 356.1 21.8 199 10-216 102-300 (591)
33 PRK06608 threonine dehydratase 100.0 2.3E-48 5E-53 338.8 21.5 203 4-215 10-212 (338)
34 PRK08639 threonine dehydratase 100.0 1.9E-48 4.1E-53 348.5 21.1 206 5-216 13-221 (420)
35 PRK08197 threonine synthase; V 100.0 3.4E-48 7.4E-53 344.5 22.0 198 10-216 72-278 (394)
36 PRK08246 threonine dehydratase 100.0 6.7E-48 1.5E-52 332.7 23.1 207 6-227 12-222 (310)
37 TIGR01127 ilvA_1Cterm threonin 100.0 3.2E-48 6.9E-53 343.6 21.5 190 18-216 1-190 (380)
38 TIGR01124 ilvA_2Cterm threonin 100.0 4.5E-48 9.7E-53 351.2 22.9 202 8-217 8-209 (499)
39 PRK06815 hypothetical protein; 100.0 4.3E-48 9.4E-53 335.0 21.0 204 4-216 7-210 (317)
40 PRK09224 threonine dehydratase 100.0 6.5E-48 1.4E-52 351.2 22.2 201 9-217 12-212 (504)
41 PRK06381 threonine synthase; V 100.0 1.8E-47 3.8E-52 331.6 23.7 195 13-216 11-214 (319)
42 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.8E-47 3.9E-52 340.6 24.0 200 13-215 66-304 (431)
43 PRK07591 threonine synthase; V 100.0 1.4E-47 3E-52 342.7 22.9 199 10-216 82-289 (421)
44 PRK07409 threonine synthase; V 100.0 2.4E-47 5.1E-52 334.8 22.8 202 8-219 22-230 (353)
45 PRK02991 D-serine dehydratase; 100.0 3.8E-47 8.2E-52 339.7 24.0 202 12-216 70-310 (441)
46 PRK08813 threonine dehydratase 100.0 5.5E-47 1.2E-51 329.6 23.7 193 5-216 27-219 (349)
47 cd01563 Thr-synth_1 Threonine 100.0 2.9E-47 6.2E-52 330.9 21.5 198 9-216 14-219 (324)
48 PRK06450 threonine synthase; V 100.0 5.5E-47 1.2E-51 329.8 22.6 186 10-216 51-243 (338)
49 PRK06260 threonine synthase; V 100.0 4.4E-47 9.6E-52 337.7 21.6 198 9-216 59-265 (397)
50 PRK06721 threonine synthase; R 100.0 1E-46 2.2E-51 330.4 23.3 203 6-218 17-225 (352)
51 PRK05638 threonine synthase; V 100.0 5.9E-47 1.3E-51 341.0 22.3 195 10-216 59-259 (442)
52 KOG1250 Threonine/serine dehyd 100.0 2.2E-47 4.8E-52 325.8 17.9 206 4-217 53-258 (457)
53 PRK08329 threonine synthase; V 100.0 2E-46 4.3E-51 328.0 22.3 190 11-217 58-253 (347)
54 PLN02569 threonine synthase 100.0 3.8E-46 8.2E-51 336.7 23.8 202 10-216 126-337 (484)
55 cd00640 Trp-synth-beta_II Tryp 100.0 6.1E-45 1.3E-49 304.5 24.4 187 18-209 1-188 (244)
56 PRK08206 diaminopropionate amm 100.0 9.2E-45 2E-49 322.4 22.3 207 6-216 31-271 (399)
57 TIGR00260 thrC threonine synth 100.0 1.7E-43 3.6E-48 307.8 19.7 196 8-215 14-221 (328)
58 TIGR01747 diampropi_NH3ly diam 100.0 8E-43 1.7E-47 307.3 22.7 205 7-216 13-250 (376)
59 KOG1251 Serine racemase [Signa 100.0 2.2E-43 4.9E-48 284.7 16.0 204 3-215 11-214 (323)
60 PRK13028 tryptophan synthase s 100.0 6.4E-42 1.4E-46 302.6 24.7 205 11-220 55-283 (402)
61 TIGR03528 2_3_DAP_am_ly diamin 100.0 2.7E-42 5.9E-47 305.8 21.8 202 13-217 37-270 (396)
62 PRK03910 D-cysteine desulfhydr 100.0 2.4E-42 5.3E-47 300.7 20.8 205 5-215 3-224 (331)
63 PRK04346 tryptophan synthase s 100.0 8.2E-42 1.8E-46 301.5 23.7 197 11-212 51-263 (397)
64 TIGR01415 trpB_rel pyridoxal-p 100.0 1.1E-41 2.4E-46 303.2 24.7 204 6-218 57-292 (419)
65 TIGR01275 ACC_deam_rel pyridox 100.0 1.2E-41 2.6E-46 294.1 21.1 192 14-212 4-207 (311)
66 PRK13802 bifunctional indole-3 100.0 3.5E-41 7.5E-46 313.1 25.1 198 11-213 319-538 (695)
67 PLN02618 tryptophan synthase, 100.0 4.1E-41 8.9E-46 297.6 23.8 199 9-212 57-276 (410)
68 cd06446 Trp-synth_B Tryptophan 100.0 3E-41 6.5E-46 297.2 22.8 203 9-217 25-244 (365)
69 TIGR00263 trpB tryptophan synt 100.0 3.4E-41 7.4E-46 298.4 23.1 196 12-212 44-255 (385)
70 PF00291 PALP: Pyridoxal-phosp 100.0 2.6E-41 5.7E-46 290.6 20.6 194 11-216 1-207 (306)
71 PRK12390 1-aminocyclopropane-1 100.0 5.3E-41 1.2E-45 293.0 21.4 206 5-216 3-231 (337)
72 PRK12391 tryptophan synthase s 100.0 1.6E-40 3.4E-45 296.3 24.4 201 12-218 72-301 (427)
73 TIGR01274 ACC_deam 1-aminocycl 100.0 7.1E-41 1.5E-45 292.1 21.7 205 5-215 2-229 (337)
74 KOG1481 Cysteine synthase [Ami 100.0 1.2E-41 2.6E-46 279.3 15.6 204 9-213 41-253 (391)
75 PRK14045 1-aminocyclopropane-1 100.0 3.8E-41 8.2E-46 292.9 19.6 201 5-211 9-221 (329)
76 cd06449 ACCD Aminocyclopropane 100.0 6.8E-41 1.5E-45 288.9 20.5 193 18-216 1-216 (307)
77 TIGR03844 cysteate_syn cysteat 100.0 5.3E-41 1.2E-45 297.5 17.8 196 12-216 57-267 (398)
78 PRK13803 bifunctional phosphor 100.0 4E-39 8.7E-44 299.0 22.6 196 12-212 265-475 (610)
79 COG0498 ThrC Threonine synthas 100.0 1.7E-34 3.8E-39 254.3 17.4 200 10-218 69-279 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 1.4E-29 3.1E-34 210.9 17.1 205 3-213 1-219 (323)
81 COG0133 TrpB Tryptophan syntha 100.0 2.4E-29 5.3E-34 210.2 16.8 195 12-211 50-259 (396)
82 COG1350 Predicted alternative 99.9 4.6E-25 1E-29 185.1 14.9 206 7-218 68-302 (432)
83 PRK09225 threonine synthase; V 99.9 4E-24 8.8E-29 192.3 19.1 178 17-208 88-279 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 4.5E-23 9.8E-28 185.6 21.0 179 18-210 88-283 (460)
85 KOG1395 Tryptophan synthase be 99.9 6E-24 1.3E-28 179.8 11.9 202 5-211 109-327 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 2.3E-21 4.9E-26 161.7 14.2 202 12-216 73-313 (443)
87 PF03808 Glyco_tran_WecB: Glyc 93.3 0.84 1.8E-05 36.0 8.9 121 81-208 13-134 (172)
88 cd06533 Glyco_transf_WecG_TagA 91.8 2.3 5E-05 33.5 9.6 121 81-209 11-133 (171)
89 KOG0025 Zn2+-binding dehydroge 91.3 1.8 3.9E-05 37.2 8.8 86 33-122 124-216 (354)
90 COG0604 Qor NADPH:quinone redu 90.5 3.5 7.6E-05 35.9 10.4 57 62-121 137-193 (326)
91 cd08230 glucose_DH Glucose deh 90.4 2.6 5.7E-05 36.7 9.6 54 65-119 170-223 (355)
92 TIGR03201 dearomat_had 6-hydro 89.8 5.9 0.00013 34.4 11.3 58 60-121 159-216 (349)
93 cd08294 leukotriene_B4_DH_like 89.5 6.5 0.00014 33.4 11.2 59 61-122 137-195 (329)
94 TIGR02819 fdhA_non_GSH formald 89.1 7.5 0.00016 34.7 11.6 58 60-120 178-235 (393)
95 PF05368 NmrA: NmrA-like famil 88.9 2.5 5.5E-05 34.4 7.9 50 72-122 2-51 (233)
96 TIGR00696 wecB_tagA_cpsF bacte 88.3 6.2 0.00013 31.3 9.4 97 81-185 13-111 (177)
97 PRK05993 short chain dehydroge 88.2 11 0.00024 31.5 11.5 52 69-123 5-56 (277)
98 TIGR03366 HpnZ_proposed putati 88.0 5.1 0.00011 33.7 9.4 58 60-120 113-170 (280)
99 PRK12823 benD 1,6-dihydroxycyc 87.4 8 0.00017 31.8 10.1 73 69-141 9-82 (260)
100 PF00764 Arginosuc_synth: Argi 86.7 9.6 0.00021 34.2 10.5 126 73-206 2-138 (388)
101 TIGR02825 B4_12hDH leukotriene 86.0 11 0.00024 32.1 10.6 58 61-121 132-189 (325)
102 cd08295 double_bond_reductase_ 86.0 13 0.00028 32.0 11.0 56 62-120 146-202 (338)
103 cd08274 MDR9 Medium chain dehy 85.7 11 0.00024 32.4 10.4 59 59-121 169-227 (350)
104 cd01075 NAD_bind_Leu_Phe_Val_D 85.7 12 0.00026 30.1 10.0 68 49-119 6-76 (200)
105 PRK09424 pntA NAD(P) transhydr 85.7 24 0.00052 32.9 13.0 49 71-122 167-215 (509)
106 TIGR03451 mycoS_dep_FDH mycoth 85.5 12 0.00027 32.5 10.7 57 61-120 170-226 (358)
107 COG2130 Putative NADP-dependen 85.4 12 0.00026 32.5 10.0 65 50-120 136-201 (340)
108 PRK03562 glutathione-regulated 85.2 16 0.00035 34.9 11.9 52 70-124 401-452 (621)
109 PF01041 DegT_DnrJ_EryC1: DegT 84.8 2.4 5.3E-05 37.3 5.9 56 69-124 40-95 (363)
110 KOG1201 Hydroxysteroid 17-beta 84.7 20 0.00043 30.9 11.0 75 68-143 38-114 (300)
111 PRK03659 glutathione-regulated 84.5 17 0.00037 34.5 11.8 51 71-124 402-452 (601)
112 PRK12743 oxidoreductase; Provi 84.4 10 0.00023 31.1 9.3 72 69-140 3-77 (256)
113 PRK10669 putative cation:proto 84.2 18 0.00039 33.9 11.7 52 70-124 418-469 (558)
114 PF00070 Pyr_redox: Pyridine n 84.2 10 0.00022 25.4 7.8 49 72-120 2-59 (80)
115 cd08256 Zn_ADH2 Alcohol dehydr 84.0 21 0.00046 30.8 11.5 58 61-121 168-225 (350)
116 cd08233 butanediol_DH_like (2R 83.9 20 0.00044 30.9 11.3 59 60-121 165-223 (351)
117 TIGR00670 asp_carb_tr aspartat 83.9 8.5 0.00018 33.3 8.7 59 62-122 145-208 (301)
118 TIGR01064 pyruv_kin pyruvate k 83.9 36 0.00077 31.4 13.7 122 84-211 262-406 (473)
119 PF00106 adh_short: short chai 83.9 11 0.00024 28.5 8.7 69 70-138 2-75 (167)
120 COG2894 MinD Septum formation 83.7 9.7 0.00021 31.7 8.3 118 84-213 23-149 (272)
121 cd08281 liver_ADH_like1 Zinc-d 83.6 16 0.00036 31.9 10.7 58 61-121 185-242 (371)
122 cd08293 PTGR2 Prostaglandin re 83.5 21 0.00045 30.7 11.2 58 62-122 147-208 (345)
123 PRK13656 trans-2-enoyl-CoA red 83.5 28 0.00061 31.3 11.9 57 40-99 14-73 (398)
124 PF02826 2-Hacid_dh_C: D-isome 83.4 16 0.00035 28.7 9.5 114 71-209 38-153 (178)
125 TIGR02822 adh_fam_2 zinc-bindi 83.3 7.8 0.00017 33.5 8.4 57 60-120 158-214 (329)
126 PF00107 ADH_zinc_N: Zinc-bind 82.9 12 0.00026 27.1 8.2 40 81-123 3-42 (130)
127 PRK09880 L-idonate 5-dehydroge 82.8 16 0.00035 31.6 10.2 59 60-121 162-220 (343)
128 PRK07109 short chain dehydroge 82.8 9.5 0.00021 33.1 8.8 72 69-140 9-82 (334)
129 PF01210 NAD_Gly3P_dh_N: NAD-d 82.8 3.4 7.4E-05 31.8 5.4 40 72-114 2-41 (157)
130 PRK13394 3-hydroxybutyrate deh 82.8 13 0.00028 30.4 9.3 55 69-123 8-63 (262)
131 cd08292 ETR_like_2 2-enoyl thi 82.5 18 0.00038 30.6 10.2 57 61-120 133-189 (324)
132 PLN03154 putative allyl alcoho 82.5 22 0.00048 31.0 11.0 57 62-121 153-210 (348)
133 PRK08628 short chain dehydroge 82.2 15 0.00032 30.1 9.4 55 69-123 8-62 (258)
134 PRK08589 short chain dehydroge 82.2 11 0.00024 31.4 8.7 73 69-141 7-80 (272)
135 PRK06139 short chain dehydroge 82.1 9.1 0.0002 33.3 8.4 54 69-122 8-62 (330)
136 PRK12481 2-deoxy-D-gluconate 3 82.1 15 0.00032 30.2 9.3 71 69-140 9-80 (251)
137 PRK06935 2-deoxy-D-gluconate 3 81.7 15 0.00033 30.1 9.3 73 69-141 16-89 (258)
138 PRK07478 short chain dehydroge 81.6 17 0.00036 29.7 9.5 73 69-141 7-81 (254)
139 KOG1197 Predicted quinone oxid 81.5 25 0.00055 29.9 10.2 54 61-117 140-193 (336)
140 PRK08703 short chain dehydroge 81.3 26 0.00057 28.2 10.5 33 69-101 7-39 (239)
141 PRK14030 glutamate dehydrogena 81.0 13 0.00028 34.0 9.1 59 49-107 208-274 (445)
142 KOG0024 Sorbitol dehydrogenase 81.0 20 0.00043 31.5 9.7 64 57-123 159-222 (354)
143 PF00107 ADH_zinc_N: Zinc-bind 80.9 8 0.00017 28.1 6.6 82 108-208 7-89 (130)
144 cd08297 CAD3 Cinnamyl alcohol 80.7 23 0.0005 30.3 10.4 54 64-120 162-215 (341)
145 cd08287 FDH_like_ADH3 formalde 80.6 31 0.00068 29.5 11.2 56 62-120 163-218 (345)
146 PRK10309 galactitol-1-phosphat 80.5 25 0.00054 30.3 10.6 58 60-120 153-210 (347)
147 cd08296 CAD_like Cinnamyl alco 80.4 24 0.00053 30.2 10.4 53 64-120 160-212 (333)
148 PRK08303 short chain dehydroge 80.3 22 0.00049 30.4 10.1 73 69-141 9-93 (305)
149 PRK08277 D-mannonate oxidoredu 80.3 16 0.00035 30.3 9.1 55 69-123 11-66 (278)
150 COG1064 AdhP Zn-dependent alco 80.2 15 0.00032 32.4 8.8 61 59-123 158-218 (339)
151 PRK08226 short chain dehydroge 80.2 16 0.00035 30.0 8.9 54 69-122 7-60 (263)
152 PRK15408 autoinducer 2-binding 79.4 42 0.0009 29.3 17.0 146 54-209 71-243 (336)
153 TIGR01832 kduD 2-deoxy-D-gluco 79.4 22 0.00048 28.8 9.4 71 69-140 6-77 (248)
154 PRK08993 2-deoxy-D-gluconate 3 79.1 28 0.00061 28.5 10.0 71 69-140 11-82 (253)
155 cd08289 MDR_yhfp_like Yhfp put 79.0 22 0.00048 30.1 9.7 50 68-120 147-196 (326)
156 PRK06114 short chain dehydroge 78.9 29 0.00062 28.4 10.0 54 69-122 9-64 (254)
157 PRK10754 quinone oxidoreductas 78.8 39 0.00085 28.6 11.2 56 62-120 135-190 (327)
158 PRK06182 short chain dehydroge 78.8 36 0.00078 28.1 11.1 68 69-140 4-71 (273)
159 KOG0023 Alcohol dehydrogenase, 78.6 11 0.00024 33.0 7.3 60 61-123 175-234 (360)
160 COG2242 CobL Precorrin-6B meth 78.6 19 0.00041 28.9 8.2 57 66-123 33-91 (187)
161 PRK07097 gluconate 5-dehydroge 78.5 18 0.0004 29.8 8.8 72 69-140 11-84 (265)
162 TIGR01751 crot-CoA-red crotony 78.5 19 0.00041 31.9 9.4 56 63-121 185-240 (398)
163 COG1751 Uncharacterized conser 78.5 24 0.00051 27.5 8.4 75 43-122 7-90 (186)
164 PRK07791 short chain dehydroge 78.5 28 0.0006 29.3 10.0 74 68-141 6-90 (286)
165 COG0800 Eda 2-keto-3-deoxy-6-p 78.5 35 0.00077 27.9 10.8 131 52-196 27-172 (211)
166 PRK12828 short chain dehydroge 78.4 31 0.00067 27.5 10.0 55 69-123 8-63 (239)
167 PF13561 adh_short_C2: Enoyl-( 78.3 11 0.00025 30.6 7.4 64 76-140 4-69 (241)
168 COG1063 Tdh Threonine dehydrog 78.3 46 0.001 29.2 14.6 51 71-123 171-222 (350)
169 PRK07523 gluconate 5-dehydroge 77.9 19 0.00042 29.4 8.7 55 69-123 11-66 (255)
170 PLN02740 Alcohol dehydrogenase 77.7 33 0.00071 30.2 10.6 57 61-120 192-248 (381)
171 cd08277 liver_alcohol_DH_like 77.5 20 0.00043 31.4 9.1 57 61-120 178-234 (365)
172 PRK05396 tdh L-threonine 3-deh 77.5 22 0.00047 30.6 9.2 52 66-120 162-213 (341)
173 PRK12937 short chain dehydroge 77.5 28 0.00061 28.0 9.5 56 69-124 6-63 (245)
174 cd08291 ETR_like_1 2-enoyl thi 77.3 31 0.00067 29.4 10.1 51 69-122 144-195 (324)
175 TIGR02818 adh_III_F_hyde S-(hy 77.2 23 0.0005 31.0 9.5 57 61-120 179-235 (368)
176 PRK06172 short chain dehydroge 77.2 21 0.00045 29.1 8.7 55 69-123 8-63 (253)
177 PRK08643 acetoin reductase; Va 77.0 24 0.00053 28.7 9.1 55 69-123 3-58 (256)
178 PRK05876 short chain dehydroge 77.0 21 0.00047 29.8 8.9 72 69-140 7-80 (275)
179 PRK08063 enoyl-(acyl carrier p 76.6 32 0.00069 27.8 9.6 55 69-123 5-61 (250)
180 cd08239 THR_DH_like L-threonin 76.6 41 0.00088 28.8 10.7 59 60-121 156-214 (339)
181 PF00185 OTCace: Aspartate/orn 76.6 17 0.00036 28.2 7.4 45 78-122 13-65 (158)
182 cd08300 alcohol_DH_class_III c 76.5 19 0.00042 31.5 8.8 57 61-120 180-236 (368)
183 PTZ00354 alcohol dehydrogenase 76.5 45 0.00098 28.1 10.9 56 63-121 136-191 (334)
184 PRK08862 short chain dehydroge 76.4 22 0.00049 28.9 8.6 73 69-141 6-80 (227)
185 PRK07035 short chain dehydroge 76.3 25 0.00055 28.6 9.0 54 69-122 9-63 (252)
186 PF08659 KR: KR domain; Inter 76.3 17 0.00038 28.4 7.7 70 71-140 3-78 (181)
187 PRK07666 fabG 3-ketoacyl-(acyl 76.2 26 0.00056 28.3 8.9 55 69-123 8-63 (239)
188 cd08285 NADP_ADH NADP(H)-depen 76.2 40 0.00086 29.1 10.6 58 60-120 159-216 (351)
189 PRK05557 fabG 3-ketoacyl-(acyl 76.2 30 0.00066 27.7 9.4 55 69-123 6-62 (248)
190 PRK05786 fabG 3-ketoacyl-(acyl 76.2 23 0.00051 28.4 8.7 34 69-102 6-39 (238)
191 PRK07454 short chain dehydroge 76.1 25 0.00054 28.4 8.8 72 69-140 7-80 (241)
192 PRK12939 short chain dehydroge 76.1 25 0.00055 28.3 8.9 55 69-123 8-63 (250)
193 PRK07792 fabG 3-ketoacyl-(acyl 76.1 25 0.00055 29.9 9.2 56 69-124 13-70 (306)
194 PRK12935 acetoacetyl-CoA reduc 75.7 26 0.00055 28.4 8.8 56 69-124 7-64 (247)
195 PRK05866 short chain dehydroge 75.5 23 0.0005 30.0 8.7 54 69-122 41-95 (293)
196 cd08242 MDR_like Medium chain 75.4 25 0.00054 29.8 9.0 57 60-120 148-204 (319)
197 PRK07890 short chain dehydroge 75.4 25 0.00054 28.6 8.7 54 69-122 6-60 (258)
198 TIGR03538 DapC_gpp succinyldia 75.3 45 0.00098 29.4 10.9 79 43-123 63-145 (393)
199 PRK12938 acetyacetyl-CoA reduc 75.3 26 0.00055 28.4 8.7 54 69-122 4-59 (246)
200 PRK06194 hypothetical protein; 75.2 30 0.00064 28.8 9.2 56 69-124 7-63 (287)
201 PRK05867 short chain dehydroge 75.0 26 0.00057 28.6 8.8 72 69-140 10-83 (253)
202 cd08288 MDR_yhdh Yhdh putative 75.0 30 0.00064 29.2 9.3 51 67-120 146-196 (324)
203 cd08243 quinone_oxidoreductase 75.0 48 0.001 27.6 10.9 55 63-120 138-192 (320)
204 PTZ00079 NADP-specific glutama 74.8 26 0.00056 32.2 9.1 53 49-101 217-269 (454)
205 PRK06181 short chain dehydroge 74.8 25 0.00054 28.8 8.6 55 69-123 2-57 (263)
206 cd08301 alcohol_DH_plants Plan 74.7 29 0.00063 30.3 9.4 58 61-121 181-238 (369)
207 cd00288 Pyruvate_Kinase Pyruva 74.7 28 0.00061 32.2 9.4 86 46-140 358-449 (480)
208 cd08284 FDH_like_2 Glutathione 74.4 26 0.00057 30.0 8.9 53 63-118 163-215 (344)
209 PF02310 B12-binding: B12 bind 74.0 17 0.00037 26.1 6.6 94 81-184 17-114 (121)
210 PRK08278 short chain dehydroge 73.9 42 0.00091 27.9 9.8 55 69-123 7-69 (273)
211 PRK06124 gluconate 5-dehydroge 73.9 28 0.00061 28.4 8.7 55 68-122 11-66 (256)
212 PRK08217 fabG 3-ketoacyl-(acyl 73.9 29 0.00064 28.0 8.7 55 69-123 6-61 (253)
213 KOG1205 Predicted dehydrogenas 73.9 41 0.00089 28.8 9.6 74 69-142 13-90 (282)
214 PRK12429 3-hydroxybutyrate deh 73.7 34 0.00073 27.8 9.1 55 69-123 5-60 (258)
215 PRK12826 3-ketoacyl-(acyl-carr 73.6 30 0.00065 27.9 8.7 55 69-123 7-62 (251)
216 TIGR03206 benzo_BadH 2-hydroxy 73.6 29 0.00063 28.0 8.6 56 69-124 4-60 (250)
217 PRK07814 short chain dehydroge 73.4 29 0.00063 28.6 8.7 54 69-122 11-65 (263)
218 PRK06128 oxidoreductase; Provi 73.3 44 0.00096 28.2 10.0 72 69-140 56-131 (300)
219 cd08246 crotonyl_coA_red croto 73.2 18 0.0004 31.9 7.8 55 63-120 189-243 (393)
220 PRK12771 putative glutamate sy 73.1 10 0.00022 35.6 6.4 55 66-121 135-207 (564)
221 PF07279 DUF1442: Protein of u 73.1 27 0.00057 28.7 7.9 48 69-116 42-94 (218)
222 PRK06079 enoyl-(acyl carrier p 73.1 29 0.00064 28.5 8.6 32 69-100 8-41 (252)
223 PRK07806 short chain dehydroge 73.1 40 0.00087 27.3 9.4 55 69-123 7-63 (248)
224 TIGR00692 tdh L-threonine 3-de 72.9 38 0.00082 29.1 9.6 53 65-120 159-211 (340)
225 cd08258 Zn_ADH4 Alcohol dehydr 72.9 57 0.0012 27.6 10.8 54 62-117 159-212 (306)
226 PRK08261 fabG 3-ketoacyl-(acyl 72.9 57 0.0012 29.4 11.1 72 68-140 210-281 (450)
227 PRK08085 gluconate 5-dehydroge 72.8 34 0.00074 27.9 8.9 54 69-122 10-64 (254)
228 PRK09134 short chain dehydroge 72.7 49 0.0011 27.1 9.8 54 69-122 10-65 (258)
229 PRK07677 short chain dehydroge 72.6 32 0.0007 28.0 8.7 54 69-122 2-56 (252)
230 PRK05653 fabG 3-ketoacyl-(acyl 72.6 39 0.00085 27.0 9.2 55 69-123 6-61 (246)
231 PF02887 PK_C: Pyruvate kinase 72.6 27 0.00059 25.3 7.4 81 52-141 5-87 (117)
232 TIGR02415 23BDH acetoin reduct 72.3 36 0.00078 27.6 8.9 54 70-123 2-56 (254)
233 PF04127 DFP: DNA / pantothena 72.2 34 0.00075 27.3 8.4 64 69-141 20-83 (185)
234 cd08278 benzyl_alcohol_DH Benz 72.0 58 0.0013 28.4 10.6 57 62-121 181-237 (365)
235 cd00401 AdoHcyase S-adenosyl-L 72.0 20 0.00044 32.4 7.8 53 63-119 197-249 (413)
236 cd05211 NAD_bind_Glu_Leu_Phe_V 71.8 25 0.00055 28.8 7.7 53 50-102 4-56 (217)
237 COG0399 WecE Predicted pyridox 71.8 32 0.00069 30.8 8.8 116 37-164 26-145 (374)
238 PRK06113 7-alpha-hydroxysteroi 71.8 34 0.00073 27.9 8.7 54 69-122 12-66 (255)
239 cd05282 ETR_like 2-enoyl thioe 71.8 44 0.00095 28.1 9.6 56 62-120 133-188 (323)
240 cd08269 Zn_ADH9 Alcohol dehydr 71.5 59 0.0013 27.1 11.5 57 61-120 123-179 (312)
241 PRK06701 short chain dehydroge 71.4 53 0.0012 27.7 10.0 55 69-123 47-103 (290)
242 PRK06949 short chain dehydroge 71.4 32 0.00068 28.0 8.4 33 69-101 10-42 (258)
243 PRK12745 3-ketoacyl-(acyl-carr 71.3 46 0.001 27.0 9.4 71 70-140 4-77 (256)
244 cd08298 CAD2 Cinnamyl alcohol 71.2 34 0.00073 29.0 8.8 54 61-118 161-214 (329)
245 cd05288 PGDH Prostaglandin deh 71.1 63 0.0014 27.3 10.6 56 62-120 140-196 (329)
246 PRK06720 hypothetical protein; 70.9 48 0.001 25.8 10.0 73 69-141 17-91 (169)
247 cd08282 PFDH_like Pseudomonas 70.7 38 0.00082 29.7 9.2 55 61-118 170-224 (375)
248 PLN02702 L-idonate 5-dehydroge 70.4 51 0.0011 28.6 9.9 58 61-121 175-232 (364)
249 cd05313 NAD_bind_2_Glu_DH NAD( 70.4 29 0.00062 29.3 7.8 52 49-100 18-69 (254)
250 PRK15438 erythronate-4-phospha 70.3 43 0.00093 30.0 9.3 126 45-197 89-223 (378)
251 PRK08213 gluconate 5-dehydroge 70.2 41 0.00089 27.5 8.9 55 69-123 13-68 (259)
252 PRK12744 short chain dehydroge 70.1 39 0.00084 27.6 8.7 71 69-139 9-85 (257)
253 cd08240 6_hydroxyhexanoate_dh_ 70.1 52 0.0011 28.3 9.8 51 67-120 175-225 (350)
254 PRK08936 glucose-1-dehydrogena 70.1 57 0.0012 26.7 9.7 55 68-122 7-63 (261)
255 PRK10083 putative oxidoreducta 69.9 65 0.0014 27.4 10.4 58 60-120 153-211 (339)
256 PRK05854 short chain dehydroge 69.9 47 0.001 28.4 9.4 73 69-141 15-91 (313)
257 COG0078 ArgF Ornithine carbamo 69.7 69 0.0015 27.8 10.0 55 68-122 153-213 (310)
258 COG0300 DltE Short-chain dehyd 69.3 42 0.0009 28.5 8.6 71 69-139 7-80 (265)
259 PRK08306 dipicolinate synthase 69.3 61 0.0013 27.8 9.9 46 71-119 154-199 (296)
260 cd08245 CAD Cinnamyl alcohol d 69.2 44 0.00095 28.4 9.1 56 62-121 157-212 (330)
261 cd08259 Zn_ADH5 Alcohol dehydr 69.0 48 0.001 27.9 9.3 53 63-118 158-210 (332)
262 TIGR02823 oxido_YhdH putative 68.8 48 0.001 28.0 9.2 53 65-120 142-195 (323)
263 PRK06505 enoyl-(acyl carrier p 68.7 62 0.0013 27.0 9.7 71 69-140 8-82 (271)
264 PRK06348 aspartate aminotransf 68.7 82 0.0018 27.7 12.3 51 71-122 91-141 (384)
265 PRK06841 short chain dehydroge 68.7 61 0.0013 26.3 9.6 33 69-101 16-48 (255)
266 PRK09422 ethanol-active dehydr 68.6 70 0.0015 27.2 10.3 57 61-121 156-213 (338)
267 PRK07904 short chain dehydroge 68.5 56 0.0012 26.9 9.3 54 69-122 9-66 (253)
268 PRK06077 fabG 3-ketoacyl-(acyl 68.4 40 0.00086 27.2 8.4 54 69-122 7-62 (252)
269 PRK03692 putative UDP-N-acetyl 68.4 51 0.0011 27.6 8.9 92 82-185 70-168 (243)
270 cd08299 alcohol_DH_class_I_II_ 68.3 43 0.00093 29.4 9.0 55 61-118 184-238 (373)
271 cd08261 Zn_ADH7 Alcohol dehydr 68.1 76 0.0016 27.1 11.0 54 61-118 153-206 (337)
272 PRK06483 dihydromonapterin red 68.0 62 0.0013 26.0 10.3 68 69-139 3-70 (236)
273 cd08267 MDR1 Medium chain dehy 67.9 47 0.001 27.7 8.9 53 63-119 139-191 (319)
274 PRK08017 oxidoreductase; Provi 67.7 65 0.0014 26.1 9.8 51 70-123 4-54 (256)
275 PRK09291 short chain dehydroge 67.5 26 0.00056 28.5 7.0 54 69-122 3-57 (257)
276 cd08264 Zn_ADH_like2 Alcohol d 67.3 43 0.00093 28.4 8.6 39 61-99 156-194 (325)
277 cd08231 MDR_TM0436_like Hypoth 67.3 83 0.0018 27.2 12.6 54 63-120 173-227 (361)
278 PLN02827 Alcohol dehydrogenase 67.2 56 0.0012 28.8 9.6 57 61-120 187-243 (378)
279 TIGR03325 BphB_TodD cis-2,3-di 67.2 62 0.0013 26.5 9.4 51 69-122 6-57 (262)
280 cd08251 polyketide_synthase po 67.2 70 0.0015 26.3 10.9 55 61-118 114-168 (303)
281 cd05285 sorbitol_DH Sorbitol d 67.1 64 0.0014 27.7 9.8 58 60-120 155-212 (343)
282 TIGR02853 spore_dpaA dipicolin 67.1 54 0.0012 28.0 9.1 65 50-117 132-196 (287)
283 TIGR01963 PHB_DH 3-hydroxybuty 67.0 45 0.00097 27.0 8.4 55 69-123 2-57 (255)
284 PRK05370 argininosuccinate syn 66.9 1E+02 0.0023 28.2 12.8 130 68-206 11-155 (447)
285 PRK07550 hypothetical protein; 66.9 89 0.0019 27.4 11.3 76 44-123 67-143 (386)
286 PRK07062 short chain dehydroge 66.9 53 0.0012 26.9 8.9 33 69-101 9-41 (265)
287 TIGR01831 fabG_rel 3-oxoacyl-( 66.6 66 0.0014 25.8 9.9 52 72-123 2-55 (239)
288 cd05281 TDH Threonine dehydrog 66.6 50 0.0011 28.3 9.0 52 66-120 162-213 (341)
289 PRK08265 short chain dehydroge 66.5 68 0.0015 26.3 9.5 52 69-122 7-58 (261)
290 cd05279 Zn_ADH1 Liver alcohol 66.5 85 0.0018 27.4 10.5 55 61-118 177-231 (365)
291 cd05278 FDH_like Formaldehyde 66.3 61 0.0013 27.6 9.5 56 61-119 161-216 (347)
292 TIGR01316 gltA glutamate synth 66.2 33 0.00072 31.2 8.0 52 71-122 274-330 (449)
293 PRK07985 oxidoreductase; Provi 66.2 54 0.0012 27.7 8.9 54 69-122 50-106 (294)
294 PRK12779 putative bifunctional 66.1 54 0.0012 33.1 10.0 31 70-100 307-337 (944)
295 COG2085 Predicted dinucleotide 66.0 73 0.0016 26.1 10.5 80 71-153 3-95 (211)
296 cd08250 Mgc45594_like Mgc45594 65.9 82 0.0018 26.6 11.2 55 63-120 135-189 (329)
297 PRK08264 short chain dehydroge 65.9 36 0.00077 27.4 7.5 33 69-101 7-40 (238)
298 cd08249 enoyl_reductase_like e 65.8 50 0.0011 28.4 8.8 52 66-121 153-204 (339)
299 PRK07231 fabG 3-ketoacyl-(acyl 65.7 69 0.0015 25.7 9.4 33 69-101 6-38 (251)
300 cd08262 Zn_ADH8 Alcohol dehydr 65.5 73 0.0016 27.1 9.8 58 60-120 154-211 (341)
301 TIGR03590 PseG pseudaminic aci 65.4 83 0.0018 26.5 10.2 81 34-123 2-88 (279)
302 PRK06101 short chain dehydroge 65.4 65 0.0014 26.0 9.0 51 70-123 3-55 (240)
303 TIGR02817 adh_fam_1 zinc-bindi 65.4 57 0.0012 27.7 9.1 50 68-120 149-199 (336)
304 PRK08594 enoyl-(acyl carrier p 65.4 72 0.0016 26.3 9.4 73 69-141 8-85 (257)
305 PRK05565 fabG 3-ketoacyl-(acyl 65.3 64 0.0014 25.8 9.0 55 69-123 6-62 (247)
306 PRK02610 histidinol-phosphate 65.3 54 0.0012 28.8 9.0 52 72-123 94-145 (374)
307 PRK07775 short chain dehydroge 65.2 62 0.0013 26.8 9.1 55 69-123 11-66 (274)
308 PRK05717 oxidoreductase; Valid 65.0 75 0.0016 25.9 9.4 54 68-123 10-63 (255)
309 cd08244 MDR_enoyl_red Possible 64.9 83 0.0018 26.4 11.0 56 61-119 136-191 (324)
310 PRK07774 short chain dehydroge 64.9 64 0.0014 26.0 8.9 54 69-122 7-61 (250)
311 PRK08339 short chain dehydroge 64.8 53 0.0011 27.2 8.5 32 69-100 9-40 (263)
312 PRK00257 erythronate-4-phospha 64.8 62 0.0013 29.0 9.3 102 70-197 117-223 (381)
313 cd05286 QOR2 Quinone oxidoredu 64.5 80 0.0017 26.0 11.1 57 62-121 131-187 (320)
314 TIGR02824 quinone_pig3 putativ 64.5 82 0.0018 26.1 11.2 57 61-120 133-189 (325)
315 PRK06138 short chain dehydroge 64.5 68 0.0015 25.8 9.0 71 69-140 6-78 (252)
316 cd05280 MDR_yhdh_yhfp Yhdh and 64.3 67 0.0015 27.0 9.2 49 69-120 148-196 (325)
317 cd05188 MDR Medium chain reduc 64.3 75 0.0016 25.6 9.8 54 63-120 130-183 (271)
318 KOG2862 Alanine-glyoxylate ami 64.3 93 0.002 27.4 9.7 86 70-155 69-156 (385)
319 PRK06500 short chain dehydroge 64.3 74 0.0016 25.6 9.5 51 69-122 7-58 (249)
320 cd06324 PBP1_ABC_sugar_binding 64.2 87 0.0019 26.3 19.9 45 163-210 192-240 (305)
321 PRK06947 glucose-1-dehydrogena 63.8 48 0.001 26.8 8.0 54 70-123 4-59 (248)
322 COG1167 ARO8 Transcriptional r 63.8 1.1E+02 0.0024 28.0 10.9 81 71-155 157-241 (459)
323 PRK09242 tropinone reductase; 63.7 65 0.0014 26.2 8.8 55 69-123 10-67 (257)
324 PRK08251 short chain dehydroge 63.6 65 0.0014 26.0 8.7 55 69-123 3-60 (248)
325 PRK13376 pyrB bifunctional asp 63.6 35 0.00075 32.0 7.6 52 71-122 176-233 (525)
326 PRK11891 aspartate carbamoyltr 63.5 57 0.0012 29.8 8.8 51 72-122 244-300 (429)
327 PRK14031 glutamate dehydrogena 63.5 40 0.00086 30.9 7.9 52 49-100 208-259 (444)
328 PRK05693 short chain dehydroge 63.5 84 0.0018 25.9 10.8 66 70-139 3-68 (274)
329 cd08290 ETR 2-enoyl thioester 63.5 63 0.0014 27.5 9.0 59 63-121 142-201 (341)
330 PRK05650 short chain dehydroge 63.5 62 0.0013 26.7 8.7 53 71-123 3-56 (270)
331 PRK12809 putative oxidoreducta 63.4 53 0.0012 31.4 9.1 52 70-121 311-380 (639)
332 TIGR01064 pyruv_kin pyruvate k 63.3 71 0.0015 29.5 9.6 85 47-140 357-443 (473)
333 PRK06198 short chain dehydroge 63.3 80 0.0017 25.6 9.5 54 69-122 7-62 (260)
334 PF00702 Hydrolase: haloacid d 63.2 42 0.0009 26.3 7.3 72 51-131 131-209 (215)
335 cd08253 zeta_crystallin Zeta-c 63.2 86 0.0019 25.9 11.0 55 63-120 140-194 (325)
336 PRK08335 translation initiatio 63.2 48 0.001 28.3 7.9 52 71-122 112-167 (275)
337 PLN02527 aspartate carbamoyltr 63.2 55 0.0012 28.3 8.4 51 72-122 154-210 (306)
338 PRK07063 short chain dehydroge 62.7 72 0.0016 26.0 8.9 72 69-140 8-83 (260)
339 PF09837 DUF2064: Uncharacteri 62.5 60 0.0013 23.9 9.2 98 84-187 2-100 (122)
340 PRK06463 fabG 3-ketoacyl-(acyl 62.4 84 0.0018 25.6 11.1 69 69-140 8-76 (255)
341 PF01262 AlaDh_PNT_C: Alanine 62.4 39 0.00085 26.2 6.8 49 71-122 22-70 (168)
342 PRK12859 3-ketoacyl-(acyl-carr 62.2 57 0.0012 26.7 8.2 72 69-140 7-93 (256)
343 PLN02586 probable cinnamyl alc 62.2 63 0.0014 28.2 8.8 55 63-120 179-233 (360)
344 TIGR00561 pntA NAD(P) transhyd 62.0 42 0.00092 31.3 7.9 49 71-122 166-214 (511)
345 PRK08945 putative oxoacyl-(acy 61.9 84 0.0018 25.4 9.6 73 68-140 12-89 (247)
346 COG1433 Uncharacterized conser 61.8 63 0.0014 24.0 7.4 52 80-134 53-104 (121)
347 PRK09072 short chain dehydroge 61.7 67 0.0015 26.3 8.6 33 69-101 6-38 (263)
348 PRK08340 glucose-1-dehydrogena 61.6 55 0.0012 26.8 8.0 31 71-101 3-33 (259)
349 PLN02583 cinnamoyl-CoA reducta 61.5 72 0.0016 26.9 8.9 34 68-101 6-39 (297)
350 PRK06197 short chain dehydroge 61.5 77 0.0017 26.8 9.1 33 69-101 17-49 (306)
351 CHL00194 ycf39 Ycf39; Provisio 61.4 58 0.0013 27.8 8.3 32 70-101 2-33 (317)
352 COG0623 FabI Enoyl-[acyl-carri 61.2 60 0.0013 27.2 7.7 68 109-183 26-93 (259)
353 PRK08192 aspartate carbamoyltr 61.2 47 0.001 29.2 7.7 51 72-122 162-218 (338)
354 PF13460 NAD_binding_10: NADH( 61.1 22 0.00048 27.3 5.3 46 72-122 2-47 (183)
355 PRK10538 malonic semialdehyde 61.1 88 0.0019 25.3 9.5 49 71-122 3-52 (248)
356 cd08248 RTN4I1 Human Reticulon 60.9 65 0.0014 27.5 8.6 48 68-119 163-210 (350)
357 PRK07576 short chain dehydroge 60.9 76 0.0017 26.1 8.8 54 69-122 10-64 (264)
358 PRK08690 enoyl-(acyl carrier p 60.8 87 0.0019 25.8 9.1 71 69-140 7-81 (261)
359 PRK12747 short chain dehydroge 60.7 58 0.0013 26.4 8.0 54 69-122 5-60 (252)
360 PRK05872 short chain dehydroge 60.6 91 0.002 26.3 9.4 68 69-140 10-82 (296)
361 PRK06200 2,3-dihydroxy-2,3-dih 60.6 93 0.002 25.4 9.5 69 69-140 7-77 (263)
362 cd08260 Zn_ADH6 Alcohol dehydr 60.2 1.1E+02 0.0024 26.1 10.5 52 62-117 160-211 (345)
363 PLN02178 cinnamyl-alcohol dehy 60.1 45 0.00097 29.5 7.5 52 66-120 177-228 (375)
364 cd08279 Zn_ADH_class_III Class 60.0 1.2E+02 0.0025 26.4 11.1 55 62-119 177-231 (363)
365 PRK07067 sorbitol dehydrogenas 60.0 93 0.002 25.3 9.4 33 69-101 7-39 (257)
366 PRK12831 putative oxidoreducta 59.9 51 0.0011 30.2 8.1 52 71-122 283-339 (464)
367 cd05284 arabinose_DH_like D-ar 59.9 79 0.0017 26.9 9.0 53 64-120 164-217 (340)
368 PF04989 CmcI: Cephalosporin h 59.9 31 0.00067 28.1 5.9 47 163-211 23-70 (206)
369 COG0836 {ManC} Mannose-1-phosp 59.7 33 0.00071 30.0 6.3 54 71-140 80-137 (333)
370 PLN00175 aminotransferase fami 59.7 1.3E+02 0.0028 26.9 11.4 51 72-123 118-168 (413)
371 PLN02253 xanthoxin dehydrogena 59.7 67 0.0015 26.6 8.3 32 69-100 19-50 (280)
372 cd08255 2-desacetyl-2-hydroxye 59.6 86 0.0019 25.7 8.9 51 61-115 91-142 (277)
373 PRK13243 glyoxylate reductase; 59.6 1.2E+02 0.0026 26.5 10.4 104 70-197 151-256 (333)
374 cd08235 iditol_2_DH_like L-idi 59.5 1.1E+02 0.0024 26.0 11.6 56 62-120 160-215 (343)
375 PRK07832 short chain dehydroge 59.3 89 0.0019 25.8 9.0 70 70-140 2-75 (272)
376 cd05283 CAD1 Cinnamyl alcohol 59.3 86 0.0019 26.8 9.1 52 65-120 167-218 (337)
377 PRK06953 short chain dehydroge 59.2 89 0.0019 24.8 10.0 51 70-123 3-53 (222)
378 PRK08642 fabG 3-ketoacyl-(acyl 59.2 93 0.002 25.0 9.4 33 69-101 6-38 (253)
379 PRK09414 glutamate dehydrogena 59.2 51 0.0011 30.2 7.8 52 49-100 212-263 (445)
380 PRK08416 7-alpha-hydroxysteroi 59.1 99 0.0021 25.3 10.2 73 69-141 9-85 (260)
381 PRK11706 TDP-4-oxo-6-deoxy-D-g 59.1 36 0.00079 30.0 6.8 55 70-124 47-101 (375)
382 PRK05826 pyruvate kinase; Prov 59.1 1.5E+02 0.0033 27.4 11.6 123 84-211 264-406 (465)
383 cd08270 MDR4 Medium chain dehy 59.0 1E+02 0.0022 25.6 9.4 49 67-118 132-180 (305)
384 PF02558 ApbA: Ketopantoate re 58.7 59 0.0013 24.2 7.1 47 72-122 1-47 (151)
385 cd08238 sorbose_phosphate_red 58.6 1.3E+02 0.0028 26.8 10.3 59 62-122 170-238 (410)
386 PRK12749 quinate/shikimate deh 58.4 65 0.0014 27.6 8.0 41 71-111 126-167 (288)
387 cd08286 FDH_like_ADH2 formalde 58.3 99 0.0021 26.4 9.3 54 62-119 161-215 (345)
388 TIGR02095 glgA glycogen/starch 58.0 84 0.0018 28.5 9.2 29 75-103 17-45 (473)
389 PRK00779 ornithine carbamoyltr 57.8 78 0.0017 27.4 8.4 60 62-122 147-209 (304)
390 PRK06702 O-acetylhomoserine am 57.8 1.5E+02 0.0032 27.1 10.5 78 72-154 79-160 (432)
391 TIGR01829 AcAcCoA_reduct aceto 57.7 71 0.0015 25.5 7.9 54 70-123 2-57 (242)
392 PF04122 CW_binding_2: Putativ 57.5 60 0.0013 22.3 9.9 79 44-127 4-85 (92)
393 PRK09730 putative NAD(P)-bindi 57.4 98 0.0021 24.7 9.5 54 70-123 3-58 (247)
394 PRK06567 putative bifunctional 57.0 71 0.0015 32.5 8.8 31 70-100 384-414 (1028)
395 PRK05479 ketol-acid reductoiso 56.9 1.4E+02 0.003 26.3 11.1 45 71-117 19-63 (330)
396 cd08265 Zn_ADH3 Alcohol dehydr 56.9 1.1E+02 0.0023 26.9 9.5 55 63-120 199-253 (384)
397 smart00822 PKS_KR This enzymat 56.8 78 0.0017 23.4 8.6 53 71-123 3-60 (180)
398 PRK07023 short chain dehydroge 56.7 74 0.0016 25.6 7.9 49 70-122 3-51 (243)
399 TIGR00658 orni_carb_tr ornithi 56.7 94 0.002 26.8 8.7 45 78-122 158-208 (304)
400 PRK09147 succinyldiaminopimela 56.5 1.4E+02 0.0031 26.3 13.1 79 43-123 64-146 (396)
401 PRK12748 3-ketoacyl-(acyl-carr 56.3 1.1E+02 0.0023 24.9 9.1 72 69-140 6-92 (256)
402 PRK06924 short chain dehydroge 56.1 1.1E+02 0.0023 24.7 9.0 32 70-101 3-34 (251)
403 PRK07201 short chain dehydroge 56.1 68 0.0015 30.4 8.5 74 68-141 371-446 (657)
404 PRK06123 short chain dehydroge 56.1 76 0.0017 25.5 7.9 54 69-122 3-58 (248)
405 PRK08177 short chain dehydroge 56.0 1E+02 0.0022 24.5 9.7 33 70-102 3-35 (225)
406 PRK08415 enoyl-(acyl carrier p 55.8 1.2E+02 0.0026 25.3 9.8 72 69-141 6-81 (274)
407 cd08234 threonine_DH_like L-th 55.8 1.3E+02 0.0027 25.5 10.0 54 61-117 153-206 (334)
408 PRK07326 short chain dehydroge 55.5 1E+02 0.0023 24.5 9.6 32 69-100 7-38 (237)
409 PRK07102 short chain dehydroge 55.4 1.1E+02 0.0023 24.6 9.6 54 70-123 3-58 (243)
410 PRK14807 histidinol-phosphate 55.4 89 0.0019 27.1 8.6 52 72-124 79-130 (351)
411 PRK13111 trpA tryptophan synth 55.3 1.3E+02 0.0028 25.4 10.3 91 49-147 73-171 (258)
412 PRK06125 short chain dehydroge 55.3 78 0.0017 25.8 7.9 32 69-100 8-39 (259)
413 PRK15454 ethanol dehydrogenase 55.3 77 0.0017 28.4 8.3 22 164-188 98-119 (395)
414 TIGR03801 asp_4_decarbox aspar 55.2 1.8E+02 0.004 27.2 11.4 82 42-123 126-215 (521)
415 PRK12824 acetoacetyl-CoA reduc 55.1 1.1E+02 0.0023 24.5 9.0 32 70-101 4-35 (245)
416 PRK07533 enoyl-(acyl carrier p 55.1 1.1E+02 0.0024 25.0 8.8 71 69-140 11-85 (258)
417 PF13478 XdhC_C: XdhC Rossmann 55.1 18 0.0004 27.3 3.6 31 72-102 1-31 (136)
418 cd08185 Fe-ADH1 Iron-containin 55.1 1E+02 0.0022 27.3 9.0 89 94-188 4-96 (380)
419 cd08276 MDR7 Medium chain dehy 55.0 1.3E+02 0.0028 25.3 10.9 54 63-120 156-209 (336)
420 TIGR01830 3oxo_ACP_reduc 3-oxo 54.9 1.1E+02 0.0023 24.4 8.6 51 72-122 2-54 (239)
421 PRK08220 2,3-dihydroxybenzoate 54.8 1.1E+02 0.0023 24.7 8.6 33 69-101 9-41 (252)
422 PRK02255 putrescine carbamoylt 54.7 1E+02 0.0022 27.2 8.7 51 72-122 157-214 (338)
423 PRK06482 short chain dehydroge 54.5 1.1E+02 0.0025 25.1 8.8 33 69-101 3-35 (276)
424 PRK04284 ornithine carbamoyltr 54.3 1.3E+02 0.0028 26.4 9.3 51 72-122 158-216 (332)
425 PTZ00377 alanine aminotransfer 54.2 1.7E+02 0.0038 26.7 10.8 53 71-123 140-192 (481)
426 PRK04148 hypothetical protein; 54.1 71 0.0015 24.1 6.7 49 70-122 18-66 (134)
427 COG0379 NadA Quinolinate synth 54.0 1.5E+02 0.0033 25.9 11.9 132 73-216 142-283 (324)
428 PRK07856 short chain dehydroge 53.9 97 0.0021 25.1 8.2 33 69-101 7-39 (252)
429 PRK07831 short chain dehydroge 53.8 1.2E+02 0.0026 24.7 9.3 31 69-99 18-49 (262)
430 PRK09257 aromatic amino acid a 53.8 1.6E+02 0.0034 26.0 11.5 79 43-123 68-149 (396)
431 PLN02342 ornithine carbamoyltr 53.7 1.6E+02 0.0035 26.1 10.3 59 62-122 189-251 (348)
432 TIGR01289 LPOR light-dependent 53.7 1.2E+02 0.0025 25.9 8.9 72 69-140 4-78 (314)
433 PRK10490 sensor protein KdpD; 53.6 1.9E+02 0.0042 29.0 11.4 108 69-183 251-375 (895)
434 PRK08334 translation initiatio 53.4 44 0.00096 29.7 6.2 51 48-102 176-229 (356)
435 PLN02514 cinnamyl-alcohol dehy 53.4 1.3E+02 0.0029 26.1 9.4 54 63-119 176-229 (357)
436 KOG0634 Aromatic amino acid am 53.4 65 0.0014 29.4 7.2 52 73-124 127-178 (472)
437 PRK07370 enoyl-(acyl carrier p 53.3 1.3E+02 0.0027 24.8 8.9 72 69-141 7-85 (258)
438 PRK08410 2-hydroxyacid dehydro 53.3 92 0.002 26.9 8.2 110 70-209 146-257 (311)
439 PRK12562 ornithine carbamoyltr 53.1 94 0.002 27.3 8.2 51 72-122 159-217 (334)
440 cd08283 FDH_like_1 Glutathione 53.1 1.2E+02 0.0026 26.7 9.2 56 61-119 178-234 (386)
441 PRK04870 histidinol-phosphate 53.1 1.1E+02 0.0023 26.5 8.7 52 72-124 84-135 (356)
442 PRK05875 short chain dehydroge 53.0 1.2E+02 0.0025 25.0 8.7 33 69-101 8-40 (276)
443 TIGR03877 thermo_KaiC_1 KaiC d 52.9 49 0.0011 27.1 6.3 55 63-117 16-74 (237)
444 COG1922 WecG Teichoic acid bio 52.9 1.1E+02 0.0024 25.8 8.3 121 81-209 72-195 (253)
445 PRK08159 enoyl-(acyl carrier p 52.8 1.3E+02 0.0029 24.9 9.8 72 69-141 11-86 (272)
446 cd08272 MDR6 Medium chain dehy 52.7 1.3E+02 0.0029 24.9 10.6 57 61-121 138-194 (326)
447 PRK12810 gltD glutamate syntha 52.6 72 0.0016 29.2 7.8 50 71-120 145-212 (471)
448 PLN02928 oxidoreductase family 52.6 1E+02 0.0022 27.2 8.4 114 70-197 160-278 (347)
449 PF02887 PK_C: Pyruvate kinase 52.6 46 0.001 24.0 5.4 45 162-212 6-50 (117)
450 PLN02918 pyridoxine (pyridoxam 52.5 1.3E+02 0.0028 28.4 9.3 49 70-118 137-192 (544)
451 PRK12775 putative trifunctiona 52.4 1.5E+02 0.0033 30.2 10.5 31 70-100 431-461 (1006)
452 PRK12769 putative oxidoreducta 52.3 33 0.00072 32.9 5.7 51 70-120 328-396 (654)
453 PRK12827 short chain dehydroge 52.2 1.2E+02 0.0026 24.2 9.4 55 69-123 7-66 (249)
454 COG1597 LCB5 Sphingosine kinas 52.2 1.2E+02 0.0026 26.1 8.6 37 174-213 58-94 (301)
455 PRK12825 fabG 3-ketoacyl-(acyl 52.1 1.2E+02 0.0026 24.1 9.4 55 69-123 7-63 (249)
456 PF01494 FAD_binding_3: FAD bi 52.0 27 0.00059 29.6 4.7 31 71-101 3-33 (356)
457 cd08263 Zn_ADH10 Alcohol dehyd 51.9 1.4E+02 0.0031 25.8 9.3 53 64-119 184-236 (367)
458 TIGR03845 sulfopyru_alph sulfo 51.9 1.1E+02 0.0024 23.6 10.5 69 72-141 62-144 (157)
459 PRK06180 short chain dehydroge 51.8 1.4E+02 0.003 24.7 9.1 33 69-101 5-37 (277)
460 PRK10624 L-1,2-propanediol oxi 51.8 65 0.0014 28.6 7.2 21 165-188 80-100 (382)
461 cd05289 MDR_like_2 alcohol deh 51.6 1.3E+02 0.0029 24.6 9.9 51 63-117 140-190 (309)
462 PRK06354 pyruvate kinase; Prov 51.6 1.4E+02 0.0031 28.5 9.6 83 49-141 363-447 (590)
463 TIGR01318 gltD_gamma_fam gluta 51.6 77 0.0017 29.0 7.8 51 70-120 142-210 (467)
464 PRK07324 transaminase; Validat 51.6 1E+02 0.0022 27.0 8.4 51 72-123 83-133 (373)
465 PRK07984 enoyl-(acyl carrier p 51.5 1.4E+02 0.003 24.7 8.9 71 69-140 7-81 (262)
466 PRK07074 short chain dehydroge 51.4 1.3E+02 0.0028 24.4 9.1 32 69-100 3-34 (257)
467 PF13380 CoA_binding_2: CoA bi 51.4 66 0.0014 23.4 6.1 50 70-119 57-106 (116)
468 COG2247 LytB Putative cell wal 51.3 1.4E+02 0.0031 26.1 8.7 65 78-142 61-127 (337)
469 PRK09206 pyruvate kinase; Prov 51.3 1.5E+02 0.0033 27.4 9.6 82 49-140 356-439 (470)
470 cd08241 QOR1 Quinone oxidoredu 51.3 1.4E+02 0.003 24.6 10.8 56 62-120 134-189 (323)
471 cd08254 hydroxyacyl_CoA_DH 6-h 51.2 1.5E+02 0.0032 25.0 10.9 57 62-122 160-216 (338)
472 PRK05166 histidinol-phosphate 51.2 1.1E+02 0.0023 26.8 8.5 52 72-124 91-142 (371)
473 COG0026 PurK Phosphoribosylami 51.1 83 0.0018 28.1 7.5 33 71-103 3-35 (375)
474 PTZ00066 pyruvate kinase; Prov 51.1 1.6E+02 0.0034 27.6 9.7 29 71-101 414-443 (513)
475 PRK07453 protochlorophyllide o 51.1 1.2E+02 0.0026 25.8 8.6 33 69-101 7-39 (322)
476 PRK06836 aspartate aminotransf 50.7 1.8E+02 0.0038 25.7 10.9 52 72-124 99-150 (394)
477 TIGR02379 ECA_wecE TDP-4-keto- 50.6 55 0.0012 29.0 6.6 54 71-124 48-101 (376)
478 PRK13984 putative oxidoreducta 50.6 76 0.0016 30.0 7.8 50 71-120 285-352 (604)
479 COG0159 TrpA Tryptophan syntha 50.5 1.6E+02 0.0034 25.1 11.9 44 79-122 134-178 (265)
480 PF02254 TrkA_N: TrkA-N domain 50.5 87 0.0019 22.1 7.2 48 72-122 1-48 (116)
481 PRK14804 ornithine carbamoyltr 50.4 1E+02 0.0022 26.7 8.0 37 68-104 153-189 (311)
482 PRK07024 short chain dehydroge 50.4 1E+02 0.0023 25.1 7.9 33 69-101 3-35 (257)
483 PRK06603 enoyl-(acyl carrier p 50.3 1.4E+02 0.0031 24.5 9.6 72 69-141 9-84 (260)
484 PRK07060 short chain dehydroge 50.2 1E+02 0.0023 24.6 7.8 52 69-123 10-62 (245)
485 PRK07366 succinyldiaminopimela 50.1 1.8E+02 0.0038 25.5 12.1 108 44-155 68-179 (388)
486 COG0137 ArgG Argininosuccinate 50.0 2E+02 0.0042 26.0 10.3 130 69-206 5-145 (403)
487 PLN02477 glutamate dehydrogena 49.9 89 0.0019 28.3 7.7 53 49-101 186-238 (410)
488 PF02737 3HCDH_N: 3-hydroxyacy 49.6 35 0.00075 26.9 4.6 31 72-102 2-32 (180)
489 TIGR01317 GOGAT_sm_gam glutama 49.6 80 0.0017 29.1 7.6 51 70-120 144-212 (485)
490 PRK02102 ornithine carbamoyltr 49.5 99 0.0021 27.1 7.8 51 72-122 158-216 (331)
491 PRK12746 short chain dehydroge 49.5 1.4E+02 0.003 24.1 9.1 54 69-122 7-62 (254)
492 PRK03515 ornithine carbamoyltr 49.5 58 0.0012 28.7 6.3 51 72-122 159-217 (336)
493 PRK08912 hypothetical protein; 49.3 1.8E+02 0.004 25.4 13.2 78 43-123 62-140 (387)
494 PRK07041 short chain dehydroge 49.3 77 0.0017 25.2 6.8 30 72-101 1-30 (230)
495 PRK11749 dihydropyrimidine deh 49.3 99 0.0021 28.1 8.1 51 71-121 275-331 (457)
496 cd08191 HHD 6-hydroxyhexanoate 49.2 1.8E+02 0.0039 25.9 9.6 15 173-188 78-92 (386)
497 COG1587 HemD Uroporphyrinogen- 49.1 1.5E+02 0.0033 24.5 9.4 125 82-215 87-218 (248)
498 PRK07889 enoyl-(acyl carrier p 48.8 1.5E+02 0.0032 24.3 8.7 31 69-99 8-40 (256)
499 cd08550 GlyDH-like Glycerol_de 48.7 1.1E+02 0.0024 26.7 8.1 34 174-210 77-110 (349)
500 PRK06371 translation initiatio 48.6 73 0.0016 28.0 6.7 40 83-122 159-203 (329)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-58 Score=387.25 Aligned_cols=219 Identities=56% Similarity=0.941 Sum_probs=208.0
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 9 ~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
+.+.+.+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|+++|.++||.+ ||++||||+|.+||++|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHH
Confidence 45778899999999999998888999999999999999999999999999999999999975 99999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHhCCC-eEeeCCCCCCccHHhHHhhHHHH
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
+.+|+++++|||++++.+|++.|++|||+|+.++...+ +..+.+++++++++.++ .++.+||+||+|+++||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 88999999999999888 77788999999999999999999
Q ss_pred HHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 167 i~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
|++|+++.+|++|+++|||||++|++++||+.+|++|||+|||++|+.+.++. ++|+|||||
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG 223 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIG 223 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCC
Confidence 99999888999999999999999999999999999999999999999988766 899999997
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=7.9e-57 Score=398.01 Aligned_cols=224 Identities=66% Similarity=1.129 Sum_probs=211.3
Q ss_pred hhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 027019 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (229)
Q Consensus 6 ~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA 85 (229)
++++++.+.+|+|||++++.+++..+.+||+|+|++|||||||||++.+++.+++++|.+.+|.++||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999988777899999999999999999999999999999999999877799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHH
Q 027019 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (229)
Q Consensus 86 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 165 (229)
++|+.+|++++||||++++..|+++|+.+||+|+.+++...++++++.+++++++.+++||++||+||.|+++||+|+++
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987656778899999998887688999999999999889999999
Q ss_pred HHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 166 Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
||++|+++++|+||+|+|+||+++|+++++|+.+|++|||+|||++|+++.+++++++.++|+|
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg 335 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIG 335 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCccc
Confidence 9999997789999999999999999999999999999999999999999988888899999986
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=3.6e-56 Score=385.42 Aligned_cols=223 Identities=74% Similarity=1.202 Sum_probs=207.0
Q ss_pred hhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
.++.++..+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.++|.+.+|.++||++|+||||.|+|+
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~ 84 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF 84 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence 45578899999999999887766667999999999999999999999999999999988888777999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
+|+.+|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.+++||++||+|+.|++.||+|+++|
T Consensus 85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E 164 (322)
T PLN02565 85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE 164 (322)
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875456788899999988766789999999999988899999999
Q ss_pred HHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 167 i~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
|++|+++.+|+||+|+|+||+++|+++++|+.+|++|||+|||++|+++.++.+.++.++|+|
T Consensus 165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg 227 (322)
T PLN02565 165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIG 227 (322)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCC
Confidence 999997679999999999999999999999999999999999999999988888888898875
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=3.4e-55 Score=380.07 Aligned_cols=229 Identities=76% Similarity=1.174 Sum_probs=212.4
Q ss_pred CCccchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 027019 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~ 80 (229)
||++.-.++.+...+++|||++++++++..+.+||+|+|++|||||||||++.+++..|+++|.+.|+.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 88899999999999999999999998876668999999999999999999999999999999999998777999999999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHH
Q 027019 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY 160 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (229)
|+|+|++|+.+|++|+||||..++..|+++++.+||+|+.++.+...++.++.+.+++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999965445567788888888766789999999999988899
Q ss_pred hhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 161 ~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
.++++||++|+.+.+|+||+|+|+||+++|+++++++.+|++|||+|||++|+++.++.+.++.++|++
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~ 229 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIG 229 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCC
Confidence 999999999986689999999999999999999999999999999999999999988888888888874
No 5
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=3.5e-55 Score=384.68 Aligned_cols=224 Identities=58% Similarity=0.991 Sum_probs=208.4
Q ss_pred hhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 027019 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (229)
Q Consensus 6 ~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA 85 (229)
++.+++.+.+++|||++++++....|.+||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+|+|
T Consensus 48 ~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA 127 (368)
T PLN02556 48 KIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLA 127 (368)
T ss_pred hhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHH
Confidence 35578899999999999999988788999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHH
Q 027019 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (229)
Q Consensus 86 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 165 (229)
++|+.+|++|+||||+.++..|+..++.+||+|+.++....+...++.+.+++++.++++|++||+||.+++.||.++++
T Consensus 128 ~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 128 FMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986444557788888888887788999999999999789999999
Q ss_pred HHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 166 Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
||++|+.+.+|+||+|+|||||++|+++++++.+|++|||+|||++++++.++.++++.++|+|
T Consensus 208 EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g 271 (368)
T PLN02556 208 EIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNG 271 (368)
T ss_pred HHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeecc
Confidence 9999986689999999999999999999999999999999999999988888888888888864
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=8.5e-53 Score=361.80 Aligned_cols=217 Identities=59% Similarity=0.983 Sum_probs=199.6
Q ss_pred hcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 027019 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (229)
Q Consensus 12 ~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~ 91 (229)
...+++|||+++++|++..+.+||+|+|++|||||||+|++.+++..++++|.+.++. +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 4568999999999999888889999999999999999999999999999998766664 499999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhh
Q 027019 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDS 171 (229)
Q Consensus 92 g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~ 171 (229)
|++|+||||++.+..|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.++..||.++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997555789999999998876568899999999997789999999999999
Q ss_pred CCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 172 GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 172 ~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
+++||+||+|+|+||+++|++.+|++.+|.+|||+|||++++++.+..++++.+++|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~ 218 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIG 218 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCC
Confidence 7679999999999999999999999999999999999999999988777777777764
No 7
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=6e-53 Score=361.85 Aligned_cols=209 Identities=45% Similarity=0.756 Sum_probs=193.7
Q ss_pred hhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
.++++...+++|||++++++....|.+||+|+|++|||||||||++.+++.+++++|.+.++. +||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHH
Confidence 456788889999999999998888889999999999999999999999999999999777764 4999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
+|+.+|++|+||||++.+..|++.++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996456888888898888775 678999999999988889999999
Q ss_pred HHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 167 i~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
|++|++..+|+||+|+|+||+++|++++||+.+|++|||+|||++++++.+
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g 210 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG 210 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC
Confidence 999997679999999999999999999999999999999999999888764
No 8
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-54 Score=360.76 Aligned_cols=227 Identities=64% Similarity=1.026 Sum_probs=216.2
Q ss_pred ccchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 027019 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~ 82 (229)
.+..+.+...+.+|+|||++++++...+.++||+|+|.+||+||.|||.++.|+.+|+..|.+.||+++++++||||+|.
T Consensus 38 ~~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGi 117 (362)
T KOG1252|consen 38 ERILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGI 117 (362)
T ss_pred hhhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHH
Confidence 34455677889999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHH---HHHHHHHHHHhCCCeEeeCCCCCCccHHhH
Q 027019 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (229)
Q Consensus 83 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (229)
+||++|+..|++|+++||+.++.+|+..|+++||+|+.++....++. ++..+.++..+.++.+..+||.||.|+..|
T Consensus 118 gLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~h 197 (362)
T KOG1252|consen 118 GLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAH 197 (362)
T ss_pred HHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccc
Confidence 99999999999999999999999999999999999999997666665 888899999999999999999999999999
Q ss_pred HhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcc--ccCCCCC
Q 027019 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGK--HLIQGIK 229 (229)
Q Consensus 160 ~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~--~~~~g~~ 229 (229)
|.+++.||++|+.+.+|.+|.++|||||++|+.+++++.+|+++|++|||.+|..+.+..+++ |.|+|||
T Consensus 198 y~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIG 269 (362)
T KOG1252|consen 198 YETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIG 269 (362)
T ss_pred cccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccc
Confidence 999999999999889999999999999999999999999999999999999999999999999 9999997
No 9
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.8e-52 Score=359.60 Aligned_cols=216 Identities=58% Similarity=0.979 Sum_probs=196.3
Q ss_pred hcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 027019 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (229)
Q Consensus 12 ~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~ 91 (229)
..++++|||+++++ ....+.+||+|+|++|||||||||++.+++.+++++|.+.++. +|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 4566789999999999999999999999999999998766664 499999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCC-eEeeCCCCCCccHHhHHhhHHHHHHHh
Q 027019 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQD 170 (229)
Q Consensus 92 g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~a~Ei~~q 170 (229)
|++|+||||+++++.|++.++.+||+|+.++++..++++.+.+++++++.++ +++++||+||.++..||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456888889998887754 568999999999888999999999999
Q ss_pred hCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 171 ~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
+++.||+||+|+|+||+++|++.+|++.+|++|||+|||.+++++.+.+++++.++|++
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~ 218 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIG 218 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCC
Confidence 97679999999999999999999999999999999999999998888777778887764
No 10
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=9.1e-52 Score=353.68 Aligned_cols=205 Identities=45% Similarity=0.774 Sum_probs=189.7
Q ss_pred hhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 027019 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (229)
Q Consensus 11 ~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 90 (229)
+...+++|||+++++++...|.+||+|+|++|||||||||++.+++.+|+++|.+.++. +||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 45678999999999999888889999999999999999999999999999999877765 49999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHh
Q 027019 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (229)
Q Consensus 91 ~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q 170 (229)
+|++|+||||+..+..|++.++.+||+|+.++.+.+++++.+.+++++++.+ .+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-CCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 9999999999999999999999999999999875568888899999988874 468899999999987899999999999
Q ss_pred hCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 171 ~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
+++.+|+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+.+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g 206 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG 206 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC
Confidence 97689999999999999999999999999999999999999887754
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=5.4e-51 Score=355.01 Aligned_cols=222 Identities=46% Similarity=0.772 Sum_probs=191.7
Q ss_pred hhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
+++.+...+++|||++++++++.+|.+||+|+|++|||||||+|++.+++.+++++|.+.++. +||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGG-TIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHH
Confidence 467889999999999999999888899999999999999999999999999999999777764 4999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCC------CHHHHHHHHHHHHHhC-CCeEeeCCCCCCccHHhH
Q 027019 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL------RFEEILEKGEEILKKT-PDGYLLRQFENPANPKIH 159 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g 159 (229)
+|+++|++|+||||+..++.|+++++.+||+|+.++... ....+.+.++++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998531 1223344455554443 378999999999998789
Q ss_pred HhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---C---CCccccCCCCC
Q 027019 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---G---QRGKHLIQGIK 229 (229)
Q Consensus 160 ~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~---~---~~~~~~~~g~~ 229 (229)
|.|++.||++|++..+|+||+|+|+||+++|++++|++.+|++|||+|||++|+.+.. + ..+++.++||+
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~ 237 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIG 237 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCC
Confidence 9999999999997679999999999999999999999999999999999999864331 1 13446667664
No 12
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1e-50 Score=347.73 Aligned_cols=213 Identities=57% Similarity=0.945 Sum_probs=193.0
Q ss_pred CCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeE
Q 027019 16 GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNL 95 (229)
Q Consensus 16 ~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~ 95 (229)
|+|||++++++++..|.+||+|+|++|||||||+|++.+++.++.++|...++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988889999999999999999999999999999999865555 44999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCC
Q 027019 96 IIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG 173 (229)
Q Consensus 96 ~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~ 173 (229)
+||||.+.+..|+++++.+||+|+.++... ..+++.+.+++++++.++++|++||+||.++++|++|+++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999642 347888899998887667999999999999974455999999999976
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCccccCCCCC
Q 027019 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIK 229 (229)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~~~~~~~~~g~~ 229 (229)
.||+||+|+|+||+++|++.+|++..|+++||+|||++++++.+....++.++|||
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~ 215 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIG 215 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCC
Confidence 89999999999999999999999999999999999999998866666677777765
No 13
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-51 Score=349.38 Aligned_cols=206 Identities=27% Similarity=0.371 Sum_probs=190.8
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
...+.++...+.+|||.+++.|++.+|.+||+|+|++||+||||.|++++.+..+.+++.. ...||++|+||||+++
T Consensus 13 ~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGv 89 (347)
T COG1171 13 LAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGV 89 (347)
T ss_pred HHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHH
Confidence 3456889999999999999999999999999999999999999999999999887633222 3459999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+++|++++||||.+++..|++.++.|||+|+.++ .+|+++.+.+.++++++ ++.|+++|++|+.+ +||.|++
T Consensus 90 A~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g--~~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi~ 165 (347)
T COG1171 90 AYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTIA 165 (347)
T ss_pred HHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEEC--CCHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHHH
Confidence 99999999999999999999999999999999999999 56999999999999997 89999999999988 6999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
.||++|++..+|+||||+|+||+++|++.+++...|++|||||||+++++|..
T Consensus 166 lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~ 218 (347)
T COG1171 166 LEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYA 218 (347)
T ss_pred HHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHH
Confidence 99999996557999999999999999999999999999999999999998864
No 14
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.6e-50 Score=354.23 Aligned_cols=208 Identities=36% Similarity=0.652 Sum_probs=180.5
Q ss_pred hhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
.+..+...+++|||+++++++...|.+||+|+|++|||||||||++.+++.+|+++|.+.++.. |+++||||||.|+|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHHH
Confidence 3455778899999999999988888999999999999999999999999999999887766654 888999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC-----CCCH-HHHH---HHHHHHHHh-----------------
Q 027019 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS-----ALRF-EEIL---EKGEEILKK----------------- 140 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~-----~~~~-~~~~---~~a~~~~~~----------------- 140 (229)
+|+.+|++|+||||++++..|++.|+.|||+|+.+++ .+.+ ..+. +.+.+++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999999999999999964 1222 1111 223444433
Q ss_pred ---------------CCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEE
Q 027019 141 ---------------TPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVY 205 (229)
Q Consensus 141 ---------------~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vi 205 (229)
.++.+|++||+|+.++..|+..+|+||++|+++++|+||+|+||||+++|+++++|+.+|++|||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 14678999999999987777778999999997789999999999999999999999999999999
Q ss_pred EEeCCCCccc
Q 027019 206 GVEPSESAVL 215 (229)
Q Consensus 206 gVep~~~~~~ 215 (229)
+|||++|+.+
T Consensus 282 gVep~~s~~~ 291 (423)
T PLN02356 282 LIDPPGSGLF 291 (423)
T ss_pred EEecCCCccc
Confidence 9999998744
No 15
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=4.5e-50 Score=348.04 Aligned_cols=203 Identities=23% Similarity=0.330 Sum_probs=188.0
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
...++++...+++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+|+
T Consensus 7 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~al 82 (322)
T PRK07476 7 YRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRAL 82 (322)
T ss_pred HHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHH
Confidence 456788999999999999999998888999999999999999999999999999988874 2349999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+.+|++|+||||++++..|++.++.+||+|+.++. +++++.+.+.+++++. +++|++||+||.+++ ||.|++
T Consensus 83 A~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t~~ 158 (322)
T PRK07476 83 AYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQGTIG 158 (322)
T ss_pred HHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chhHHH
Confidence 999999999999999999999999999999999999984 4888999999988876 679999999999985 899999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
+||++|++ ++|+||+|+|+||+++|++.+|++.+|++|||+|||++++++.
T Consensus 159 ~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~ 209 (322)
T PRK07476 159 LEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMH 209 (322)
T ss_pred HHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 99999995 7999999999999999999999999999999999999987654
No 16
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.9e-50 Score=358.33 Aligned_cols=203 Identities=26% Similarity=0.434 Sum_probs=188.9
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
..+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+++
T Consensus 10 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 85 (404)
T PRK08198 10 EEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGV 85 (404)
T ss_pred HHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHH
Confidence 456788899999999999999998888999999999999999999999999999876553 4569999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+.+|++|+||||++++..|++.++.|||+|+.++ .+++++.+.+.+++++. +++|++||+||.++ +||.|+|
T Consensus 86 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t~a 161 (404)
T PRK08198 86 AYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGTIG 161 (404)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHHHH
Confidence 99999999999999999999999999999999999998 45999999999998886 78999999999988 5999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
.||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||++|+++.
T Consensus 162 ~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~ 212 (404)
T PRK08198 162 LEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMP 212 (404)
T ss_pred HHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 99999994 7999999999999999999999999999999999999998874
No 17
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=5.6e-50 Score=348.23 Aligned_cols=211 Identities=27% Similarity=0.396 Sum_probs=190.1
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
...++++...+++|||++++++++..+.+||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||.|+
T Consensus 15 ~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~al 90 (333)
T PRK08638 15 IEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGV 90 (333)
T ss_pred HHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHH
Confidence 456788999999999999999988888899999999999999999999999998765332 3459999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+.+|++|+||||++.+..|+++++.+||+|+.++ .+++++.+.+++++++. +++|++||+||.+++ ||.|++
T Consensus 91 A~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g~~t~a 166 (333)
T PRK08638 91 ALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHG--DNFNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-GQGTIG 166 (333)
T ss_pred HHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-cccHHH
Confidence 99999999999999999999999999999999999998 45889999999998886 779999999999884 999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCCcccc
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQRGKHL 224 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~----~~~~~~~~ 224 (229)
+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|||++|++|. .+.+..++
T Consensus 167 ~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~ 229 (333)
T PRK08638 167 LEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHR 229 (333)
T ss_pred HHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCC
Confidence 9999999 57999999999999999999999999999999999999997654 44444443
No 18
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.3e-49 Score=359.78 Aligned_cols=221 Identities=45% Similarity=0.771 Sum_probs=192.9
Q ss_pred hHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 8 ~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
++.+...+++|||++++++++..+.+||+|+|++|||||||+|++.+++.+++++|.+.+| ++|+++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 4556778999999999999988888999999999999999999999999999999987777 459999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|+.+|++|++|||++++..|+..++.+||+|+.++....++ ...+.+.+++++.++.+|++||+|+.++..||.+++
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998542233 235667778777556788999999999878999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC-----CCccccCCCCC
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG-----QRGKHLIQGIK 229 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~~-----~~~~~~~~g~~ 229 (229)
+||++|+++.||+||+|+||||+++|++.++++.+|++|||+|||++|+...+. ...++.++|+|
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~ 230 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIG 230 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCC
Confidence 999999976899999999999999999999999999999999999998743321 12246677764
No 19
>PLN02970 serine racemase
Probab=100.00 E-value=8.8e-50 Score=346.84 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=185.4
Q ss_pred hhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
..+++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+|+
T Consensus 17 a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 92 (328)
T PLN02970 17 ARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALAL 92 (328)
T ss_pred HHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHH
Confidence 4467888999999999999998888899999999999999999999999999876553 455999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
+|+.+|++|+||||++++..|++.|+.+||+|+.++. +++++.+.+++++++ ++++|++||+|+.+++ ||.|+++|
T Consensus 93 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~-~g~~~~~~~~n~~~~~-g~~t~g~E 168 (328)
T PLN02970 93 AAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQE-TGAVLIHPYNDGRVIS-GQGTIALE 168 (328)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHh-cCCEEeCCCCCcchhh-ehHHHHHH
Confidence 9999999999999999999999999999999999995 588888889998877 4889999999999885 99999999
Q ss_pred HHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 167 i~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
|++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||++|+++.
T Consensus 169 i~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~ 217 (328)
T PLN02970 169 FLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAA 217 (328)
T ss_pred HHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHH
Confidence 999995 7999999999999999999999999999999999999998774
No 20
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=5.7e-50 Score=355.71 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=188.8
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
....++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||++
T Consensus 7 i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~a 82 (403)
T PRK08526 7 IYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQG 82 (403)
T ss_pred HHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHH
Confidence 3456788999999999999999998888999999999999999999999999998876543 355999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+.+|++|+||||++++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+|+.++ +||.|+
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gti 158 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGTI 158 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHHH
Confidence 9999999999999999999999999999999999999984 6999999999998876 78999999999887 699999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
+.||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||||||++|+++.
T Consensus 159 a~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~ 210 (403)
T PRK08526 159 ALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMY 210 (403)
T ss_pred HHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHH
Confidence 999999994 7999999999999999999999999999999999999999873
No 21
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.5e-49 Score=360.99 Aligned_cols=201 Identities=28% Similarity=0.411 Sum_probs=185.7
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 9 ~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
.++...+++|||+++++|++..|.+||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||.++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 46778899999999999999899999999999999999999999999987764332 33499999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHH
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 168 (229)
+.+|++|+||||.+++..|++.++.|||+|+.++ ++++++.+.+.+++++. +++|++||+||.++. ||.|++.||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g--~~~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHG--ESFPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999998 46999999999999886 789999999999985 9999999999
Q ss_pred HhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 169 ~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
+|+++.+|+||+|+|+||+++|++.++|+.+|++|||||||++++++..
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~ 229 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQA 229 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhH
Confidence 9996579999999999999999999999999999999999999998863
No 22
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.6e-49 Score=340.26 Aligned_cols=204 Identities=22% Similarity=0.317 Sum_probs=186.8
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
....++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+|
T Consensus 6 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 81 (317)
T TIGR02991 6 IERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRA 81 (317)
T ss_pred HHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHH
Confidence 3456788999999999999999998888899999999999999999999999998764321 345999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+.+|++|++|||+..+..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|+
T Consensus 82 lA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~ 157 (317)
T TIGR02991 82 LAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGTL 157 (317)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHHH
Confidence 9999999999999999999999999999999999999995 5888888999998876 78999999999988 499999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
++||++|++ ++|+||+|+|+||+++|+++++|+.+|++|||+|||++++++.
T Consensus 158 a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~ 209 (317)
T TIGR02991 158 GLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMK 209 (317)
T ss_pred HHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 999999994 7899999999999999999999999999999999999888775
No 23
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.4e-49 Score=351.99 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=187.0
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
...+.++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+.+. .+.||++|+||||+|+
T Consensus 13 ~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~ 88 (406)
T PRK06382 13 LYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGV 88 (406)
T ss_pred HHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHH
Confidence 356688899999999999999998888999999999999999999999999988776542 3349999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+.+|++|+||||++.+..|++.++.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.++. ||.|++
T Consensus 89 A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t~~ 164 (406)
T PRK06382 89 AYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGTIG 164 (406)
T ss_pred HHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHHHH
Confidence 999999999999999999999999999999999999984 5899999999998876 789999999999885 999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~ 215 (229)
+||++|++ .+|+||+|+|+||+++|++.++++.+|++|||||||++|+++
T Consensus 165 ~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~ 214 (406)
T PRK06382 165 LEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSM 214 (406)
T ss_pred HHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 99999994 799999999999999999999999999999999999999886
No 24
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-49 Score=341.71 Aligned_cols=203 Identities=22% Similarity=0.267 Sum_probs=185.5
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
...++++...+++|||++++++++.+|.+||+|+|++|||||||+|++.+++.++++++.. ...||++|+||||+|+
T Consensus 9 ~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~---~~~vv~aSsGN~g~al 85 (322)
T PRK06110 9 EAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPR---VRGVISATRGNHGQSV 85 (322)
T ss_pred HHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCC---CceEEEECCCHHHHHH
Confidence 3456788999999999999999988888999999999999999999999999999887643 3349999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+++|++|+||||.+.+..|+++++.+||+|+.++ .+++++.+.+.+++++. ++||+++| ||.++ .||.|++
T Consensus 86 A~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~~ 160 (322)
T PRK06110 86 AFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATYA 160 (322)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchHH
Confidence 99999999999999999999999999999999999997 45899999999998876 78999998 67777 5999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
+||++|++ ++|+||+|+|+||+++|++.++++.+|++|||+|||++|+++.
T Consensus 161 ~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~ 211 (322)
T PRK06110 161 LELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYA 211 (322)
T ss_pred HHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHH
Confidence 99999995 7999999999999999999999999999999999999998874
No 25
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.5e-49 Score=342.45 Aligned_cols=203 Identities=23% Similarity=0.327 Sum_probs=186.1
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
....++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+.+. .++||++|+||||+|
T Consensus 11 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 86 (321)
T PRK07048 11 VAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQA 86 (321)
T ss_pred HHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHH
Confidence 3456788999999999999999988788899999999999999999999999998875432 455999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+.+|++|++|||.+.+..|++.++.+||+|+.++. .++++.+.+++++++. +++|++||+|+.++ .||.|+
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~t~ 162 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQGTA 162 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccchH
Confidence 9999999999999999999999999999999999999994 4778888899998876 78999999999887 599999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~ 215 (229)
++||++|++ .||+||+|+|+||+++|++.++++.+|+++||+|||++++++
T Consensus 163 ~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~ 213 (321)
T PRK07048 163 AKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDG 213 (321)
T ss_pred HHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhH
Confidence 999999995 899999999999999999999999999999999999999864
No 26
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.1e-48 Score=345.77 Aligned_cols=198 Identities=19% Similarity=0.297 Sum_probs=178.2
Q ss_pred cCCCcceeccccccCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 027019 15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (229)
Q Consensus 15 ~~~TPL~~~~~l~~~~~--------~~i~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 69 (229)
+++|||++++++++.+| .+||+|+|++|| |||||||++.+++.. ++++|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999998864 77888887765
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 027019 70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (229)
Q Consensus 70 -----~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~ 144 (229)
++||++|+||||.|+|++|+.+|++|+||||++++..|++.|+.+||+|+.++. +++++.+.+.+++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 479999999999999999999999999999999999999999999999999984 5899999999999887678
Q ss_pred EeeCCCCCCccHHhHHhhHHHHHHHhhCC---C-----CcEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 027019 145 YLLRQFENPANPKIHYETTGPEIWQDSGG---K-----VDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL 215 (229)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~---~-----~d~iv~pvG~Gg~~aGi~~~~~~~-~~~~~vigVep~~~~~~ 215 (229)
+|++|++++.. .+||.|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++++
T Consensus 208 ~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 89998655554 47999999999999952 3 458999999999999999999997 78899999999999876
No 27
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.6e-49 Score=352.56 Aligned_cols=204 Identities=23% Similarity=0.310 Sum_probs=187.5
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
.....+++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.++.. ...||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 85 (403)
T PRK07334 10 IRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQG 85 (403)
T ss_pred HHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHH
Confidence 3456788999999999999999998888899999999999999999999999998765432 334999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+.+|++|+||||...++.|+++++.+||+|+.++ .+++++.+.+++++++. +++|++||+||.++ .||.|+
T Consensus 86 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~--~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t~ 161 (403)
T PRK07334 86 VAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHG--ETLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGTV 161 (403)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHHH
Confidence 999999999999999999999999999999999999997 45899999999998875 78999999999988 599999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
++||++|+ +.+|+||+|+|+||+++|+++++++.+|++|||+|||++++++.
T Consensus 162 ~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~ 213 (403)
T PRK07334 162 ALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMY 213 (403)
T ss_pred HHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 99999999 47999999999999999999999999999999999999998875
No 28
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=7.5e-49 Score=343.68 Aligned_cols=202 Identities=25% Similarity=0.333 Sum_probs=182.5
Q ss_pred hHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 8 ~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
.+++++++|+|||++++++++.++.+||+|+|++|||||||||++.+++.++.++| .++||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~vV~aSsGN~G~AlA~~ 93 (351)
T PRK06352 19 TPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG-----AEAVICASTGNTSAAAAAY 93 (351)
T ss_pred cCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCC-----CCEEEEECCcHHHHHHHHH
Confidence 34588999999999999998888889999999999999999999999999999887 4569999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
|+.+|++|+||||++ .+..|+++++.+||+|+.++. +++++.+.+++++++. ++++++ +.||.+++ ||.|+++|
T Consensus 94 aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~~E 168 (351)
T PRK06352 94 ATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYRLE-GQKTAAFE 168 (351)
T ss_pred HHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCcccee-eHHHHHHH
Confidence 999999999999997 589999999999999999984 5889999999998774 556655 55999885 99999999
Q ss_pred HHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCC-----cEEEEEeCCCCccccCCC
Q 027019 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-----IKVYGVEPSESAVLNGGQ 219 (229)
Q Consensus 167 i~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~-----~~vigVep~~~~~~~~~~ 219 (229)
|++|++..||+||+|+|+||+++|++++|++.+|+ +|||+|||++++++..+.
T Consensus 169 I~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~ 226 (351)
T PRK06352 169 ICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGK 226 (351)
T ss_pred HHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCC
Confidence 99999768999999999999999999999998876 899999999998775543
No 29
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.6e-48 Score=337.25 Aligned_cols=197 Identities=25% Similarity=0.338 Sum_probs=179.1
Q ss_pred CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEE
Q 027019 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96 (229)
Q Consensus 17 ~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ 96 (229)
+|||++++++++..+.+||+|+|++|||||||||++.+++.+++++|. .+ .++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888899999999999999999999999999998874 22 3459999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCC--C
Q 027019 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--K 174 (229)
Q Consensus 97 ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--~ 174 (229)
||||++.+..|++.|+.+||+|+.++.. .++++.+.+.+++++.++++|++||+||.+++ ||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999853 26677777888877655789999999999985 889999999999975 5
Q ss_pred CcEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC
Q 027019 175 VDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 175 ~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vigVep~~~~~~~~ 217 (229)
||+||+|+|+||+++|++++|++.+ |+++||+|||++|+++.+
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~ 200 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNA 200 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHH
Confidence 9999999999999999999999996 999999999999988753
No 30
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.7e-48 Score=335.70 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=189.9
Q ss_pred CccchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 027019 2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g 81 (229)
+..+..++.+.+.+++|||+++++|++.+|.+||+|+|++|||||||||.+.+++.++++++. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 345677888999999999999999998888999999999999999999999999999887662 3459999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHh
Q 027019 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (229)
Q Consensus 82 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (229)
+|+|++|+.+|++|++|||.+.+..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++|++|+.++ .||.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHH
Confidence 999999999999999999999999999999999999999995 4889999999998886 78999999999988 4899
Q ss_pred hHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 162 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
++++||++|++ .||+||+|+||||+++|+++++++.++++|||+|||.+++++.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~ 207 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMA 207 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 99999999996 5999999999999999999999999999999999999998764
No 31
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.6e-48 Score=347.51 Aligned_cols=204 Identities=24% Similarity=0.416 Sum_probs=184.6
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
....+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+.. . .++||++|+||||+++
T Consensus 4 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~---~~gvv~aSsGN~g~a~ 79 (409)
T TIGR02079 4 EAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ-L---AKGVVCASAGNHAQGF 79 (409)
T ss_pred HHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-h---CCEEEEECccHHHHHH
Confidence 45678899999999999999999888899999999999999999999999998754322 1 3459999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE---EEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHh
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI---ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V---~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (229)
|++|+++|++|+||||+.++..|+..++.+||+| +.++ .+++++.+.+.+++++. +++|++||+||.++. ||.
T Consensus 80 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~ 155 (409)
T TIGR02079 80 AYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-GQG 155 (409)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-hhH
Confidence 9999999999999999999999999999999974 4444 46999999999998886 789999999999884 999
Q ss_pred hHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 162 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
|+++||++|++..||+||+|+|+||+++|++.++|+.+|++|||||||++|+++.
T Consensus 156 ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~ 210 (409)
T TIGR02079 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMK 210 (409)
T ss_pred HHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHH
Confidence 9999999999756999999999999999999999999999999999999999875
No 32
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.8e-48 Score=356.15 Aligned_cols=199 Identities=24% Similarity=0.403 Sum_probs=183.8
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 89 (229)
++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+.+..+.++. . ...||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~---~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-L---DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-C---CCCEEEECCCHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999885443 2 334999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHH
Q 027019 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (229)
Q Consensus 90 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ 169 (229)
++|++|+||||++++..|++.++.+||+|+.++ ++++++.+.+.+++++. +++|++||+||.++ +||.|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVG--DSYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999998 45999999999998886 67899999999998 599999999999
Q ss_pred hhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 170 q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
|+++.+|+||+|+|+||+++|++.++|+.+|++|||||||+++++|.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 99656999999999999999999999999999999999999999885
No 33
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-48 Score=338.76 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=185.1
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
....++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.+++++|.+. ++||++|+||||+|
T Consensus 10 i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~a 86 (338)
T PRK06608 10 IAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQA 86 (338)
T ss_pred HHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHH
Confidence 345678889999999999999999988899999999999999999999999999999988532 45999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+.+|++|++|||+++++.|++.++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+++ ||.|+
T Consensus 87 lA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g~~t~ 160 (338)
T PRK06608 87 VAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-GAGTL 160 (338)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-cHHHH
Confidence 9999999999999999999999999999999999999973 4677777777 444 4789999999999984 89999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~ 215 (229)
+.||++|++.++|+||+|+|+||+++|++.++++.+++++||+|||++++++
T Consensus 161 a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~ 212 (338)
T PRK06608 161 CYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDA 212 (338)
T ss_pred HHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHH
Confidence 9999999976899999999999999999999999999999999999999865
No 34
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.9e-48 Score=348.50 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=184.2
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
..+++++...+++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.+... .++||++|+||||.++
T Consensus 13 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~al 88 (420)
T PRK08639 13 DKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGV 88 (420)
T ss_pred HHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHH
Confidence 356688999999999999999998888999999999999999999999999988533221 3459999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD-SALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
|++|+++|++|+||||++++..|++.++.+||+|+.+. ...+++++.+.+.+++++. +++|++||+||.++ +||.|+
T Consensus 89 A~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~ti 166 (420)
T PRK08639 89 AYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQGTV 166 (420)
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchhHH
Confidence 99999999999999999999999999999999743322 1246999999999998886 78999999999988 599999
Q ss_pred HHHHHHhhCCC--CcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 164 GPEIWQDSGGK--VDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 164 a~Ei~~q~~~~--~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
++||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||++|+++.
T Consensus 167 g~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~ 221 (420)
T PRK08639 167 AVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMK 221 (420)
T ss_pred HHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHH
Confidence 99999999655 999999999999999999999999999999999999999874
No 35
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=3.4e-48 Score=344.48 Aligned_cols=198 Identities=23% Similarity=0.225 Sum_probs=183.4
Q ss_pred hhhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
.+++++|+|||++++++++.+| .+||+|+|++|||||||||++.+++.+|.++| .++|+++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELG-----VKHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHH
Confidence 4889999999999999988887 59999999999999999999999999999887 46699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHH
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 168 (229)
+.+|++|+||||++.+..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++.||++++ |++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHH
Confidence 99999999999999999999999999999999995 4888888998888776 789999999999996 9999999999
Q ss_pred HhhCC-CCcEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCcccc
Q 027019 169 QDSGG-KVDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 169 ~q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~-------~~~~~vigVep~~~~~~~ 216 (229)
+|+++ .||+||+|+|+|++++|++++|++. .+.+|||+|||++|+++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~ 278 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIV 278 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHH
Confidence 99975 4999999999999999999999987 378999999999998764
No 36
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=6.7e-48 Score=332.66 Aligned_cols=207 Identities=26% Similarity=0.409 Sum_probs=184.3
Q ss_pred hhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 027019 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (229)
Q Consensus 6 ~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA 85 (229)
..++++...+++|||+++++++.. +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||+|+|
T Consensus 12 ~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a~A 84 (310)
T PRK08246 12 AAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLAVA 84 (310)
T ss_pred HHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHHHH
Confidence 456788999999999999998866 7899999999999999999999999988765 2 34599999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHH
Q 027019 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (229)
Q Consensus 86 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 165 (229)
++|+.+|++|+||||+..++.|+++++.+||+|+.++. +++++.+.+.+++++. +++|++||+||.++. ||.|+++
T Consensus 85 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g~~t~~~ 160 (310)
T PRK08246 85 YAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVLA-GAGTLGL 160 (310)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-chHHHHH
Confidence 99999999999999999999999999999999999984 5888999999888776 789999999999885 9999999
Q ss_pred HHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CCCccccCCC
Q 027019 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQRGKHLIQG 227 (229)
Q Consensus 166 Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~----~~~~~~~~~g 227 (229)
||++|+ +.||+||+|+|+||+++|++.+++. .+|||+|||++++++.. +++.++..++
T Consensus 161 Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~ 222 (310)
T PRK08246 161 EIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSG 222 (310)
T ss_pred HHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCC
Confidence 999999 4799999999999999999999964 48999999999988753 4555555444
No 37
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3.2e-48 Score=343.56 Aligned_cols=190 Identities=26% Similarity=0.408 Sum_probs=178.6
Q ss_pred CcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 027019 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (229)
Q Consensus 18 TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~i 97 (229)
|||++++++++..|.+||+|+|++|||||||+|++.+++.++.++++ .++||++|+||||.|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999998888999999999999999999999999999988775 34599999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCCCCcE
Q 027019 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDA 177 (229)
Q Consensus 98 vvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~ 177 (229)
|||++++..|++.++.+||+|+.++ .+++++.+.+.+++++. +++|++||+|+.++ +||.|++.||++|++ ++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHG--DDYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhCC-CCCE
Confidence 9999999999999999999999998 45999999999998875 78999999999988 599999999999994 7999
Q ss_pred EEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 178 iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
||+|+|+||+++|++.++|+.+|++|||||||++|+++.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~ 190 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMY 190 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999999999999999999999999999999999998874
No 38
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=4.5e-48 Score=351.17 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=186.1
Q ss_pred hHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 8 ~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
..++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... .++||++|+||||.++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 347788999999999999999889999999999999999999999999988744322 4459999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHH
Q 027019 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (229)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei 167 (229)
|+++|++|+||||.+++..|++.++.+||+|+.++ .+++++.+.+.+++++. +++|++||+||.++ +||.|+|.||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g--~~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHG--ANFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeC--cCHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHH
Confidence 99999999999999999999999999999999998 45999999999998886 78999999999988 5999999999
Q ss_pred HHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 168 ~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
++|++.++|+||+|+|+||+++|++.++|+.+|++|||||||+++++|.+
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~ 209 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQ 209 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 99996689999999999999999999999999999999999999998854
No 39
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-48 Score=334.97 Aligned_cols=204 Identities=21% Similarity=0.278 Sum_probs=185.4
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
....++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.++.. ..++|++|+||||+|
T Consensus 7 i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~a 82 (317)
T PRK06815 7 ILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQG 82 (317)
T ss_pred HHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHH
Confidence 3456788899999999999999998888999999999999999999999999987644321 345999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+.+|++|+||||.+.+..|+..++.+||+|+.++. +++++...+.+++++. +++|++||+||.++ .||+++
T Consensus 83 lA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~ 158 (317)
T PRK06815 83 VALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGTI 158 (317)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhHH
Confidence 9999999999999999999999999999999999999995 4888888899988775 78899999999888 599999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
++||++|++ .+|+||+|+|+||+++|++.++++.+|++|||+|||++++++.
T Consensus 159 a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~ 210 (317)
T PRK06815 159 GMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLY 210 (317)
T ss_pred HHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHH
Confidence 999999995 6999999999999999999999999999999999999998875
No 40
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.5e-48 Score=351.21 Aligned_cols=201 Identities=28% Similarity=0.424 Sum_probs=185.5
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 9 ~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
.++...+.+|||++++++++..|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 46788999999999999999889999999999999999999999999988764321 45699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHH
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 168 (229)
+.+|++|+||||++++..|++.++.+||+|+.++ .+|+++.+.+.+++++. +++|++||+||.++ +|+.|++.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g--~~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHG--DSFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 9999999999999999999999999999999998 46999999999998875 78999999999998 59999999999
Q ss_pred HhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 169 ~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
+|++..+|+||+|+|+||+++|++.++|+.+|++|||||||+++++|..
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~ 212 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKA 212 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 9996559999999999999999999999999999999999999998753
No 41
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.8e-47 Score=331.58 Aligned_cols=195 Identities=26% Similarity=0.356 Sum_probs=178.8
Q ss_pred cccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 027019 13 ELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (229)
Q Consensus 13 ~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~ 91 (229)
..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|+++| .++||++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLG-----YSGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHc
Confidence 4699999999999998887 69999999999999999999999999999988 46699999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCC-CC-ccHHhHHhhHHHHHHH
Q 027019 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE-NP-ANPKIHYETTGPEIWQ 169 (229)
Q Consensus 92 g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~a~Ei~~ 169 (229)
|++|+||||...+..|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++ || .++ .||.|+++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHHHHHH
Confidence 99999999999999999999999999999995 4888999999988774 788888885 76 456 599999999999
Q ss_pred hhCCCCcEEEEccCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCcccc
Q 027019 170 DSGGKVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 170 q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~------~~~~~vigVep~~~~~~~ 216 (229)
|++..||+||+|+|+||+++|++++|++. .|.+|||+|||.+++++.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~ 214 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIV 214 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHH
Confidence 99767999999999999999999999998 788999999999986653
No 42
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.8e-47 Score=340.61 Aligned_cols=200 Identities=21% Similarity=0.308 Sum_probs=180.1
Q ss_pred cccCCCcceeccccccCC--------CceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC---------
Q 027019 13 ELIGNTPMVYLNNVVDGC--------VARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK--------- 69 (229)
Q Consensus 13 ~~~~~TPL~~~~~l~~~~--------~~~i~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~--------- 69 (229)
.++++|||++++++++.+ +.+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 66 ~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~ 145 (431)
T TIGR02035 66 GGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKK 145 (431)
T ss_pred CCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchh
Confidence 399999999999998744 5799999999999 999999999998864 67888877653
Q ss_pred -------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 027019 70 -------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (229)
Q Consensus 70 -------~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~ 142 (229)
++||++|+||||.|+|++|+.+|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++.+
T Consensus 146 ~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~ 223 (431)
T TIGR02035 146 FKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADP 223 (431)
T ss_pred hhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999999999999999999995 59999999999998876
Q ss_pred CeEeeCCCCCCccHHhHHhhHHHHHHHhhCC--------CCcEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCc
Q 027019 143 DGYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESA 213 (229)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--------~~d~iv~pvG~Gg~~aGi~~~~~~~-~~~~~vigVep~~~~ 213 (229)
++||+++ .|+.++.+||.|+++||++|+++ .||+|++|+|+||+++|+++++|+. +|++|||+|||++++
T Consensus 224 ~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~ 302 (431)
T TIGR02035 224 MCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSP 302 (431)
T ss_pred CeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCH
Confidence 7788887 46666668999999999999952 4779999999999999999999997 889999999999998
Q ss_pred cc
Q 027019 214 VL 215 (229)
Q Consensus 214 ~~ 215 (229)
++
T Consensus 303 ~~ 304 (431)
T TIGR02035 303 CM 304 (431)
T ss_pred HH
Confidence 75
No 43
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.4e-47 Score=342.70 Aligned_cols=199 Identities=18% Similarity=0.264 Sum_probs=184.3
Q ss_pred hhhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
.+++++|+|||++++++++.+| .+||+|+|++|||||||||++.+++.+|.+.| .++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g-----~~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELG-----FTTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHHHHH
Confidence 4789999999999999998888 59999999999999999999999999999987 45699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHH
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 168 (229)
+++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+.+++++.++++|++++.||..++ |++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHH
Confidence 99999999999999999999999999999999995 48999999999988776789999888998885 9999999999
Q ss_pred HhhCCC-CcEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCcccc
Q 027019 169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 169 ~q~~~~-~d~iv~pvG~Gg~~aGi~~~~~~~-------~~~~~vigVep~~~~~~~ 216 (229)
+|+++. ||+||+|+|+|++++|++++|+++ .+.+|||+|||++++++.
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~ 289 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIA 289 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHH
Confidence 999754 999999999999999999999987 577999999999987765
No 44
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=2.4e-47 Score=334.84 Aligned_cols=202 Identities=26% Similarity=0.309 Sum_probs=181.3
Q ss_pred hHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 8 ~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
.+++++++|+|||++++++++..|.+||+|+|++|||||||||++.+++.+++++| ..+||++|+||||+|+|++
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~iv~aSsGN~g~alA~~ 96 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEG-----AKAVICASTGNTSASAAAY 96 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEEEECCcHHHHHHHHH
Confidence 34578899999999999998877889999999999999999999999999999887 4569999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
|+.+|++|+||||+. .+..|++.++.+||+|+.+++ .++++.+.+++++++. +++++++ .||.+++ ||.|+++|
T Consensus 97 a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~~-g~~t~~~E 171 (353)
T PRK07409 97 AARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRIE-GQKTAAFE 171 (353)
T ss_pred HHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhhh-hHHHHHHH
Confidence 999999999999997 688999999999999999995 5899999999998876 4677765 5899885 89999999
Q ss_pred HHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCC
Q 027019 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQ 219 (229)
Q Consensus 167 i~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------~~~vigVep~~~~~~~~~~ 219 (229)
|++|++..+|+||+|+|+||+++|++.++++..+ .+|||+|||++++++..+.
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~ 230 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGE 230 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCC
Confidence 9999976799999999999999999999987643 4899999999998776543
No 45
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=3.8e-47 Score=339.68 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=179.7
Q ss_pred hcccCCCcceeccccccCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC--------
Q 027019 12 TELIGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK-------- 69 (229)
Q Consensus 12 ~~~~~~TPL~~~~~l~~~~~--------~~i~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~-------- 69 (229)
+.++++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 70 ~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~ 149 (441)
T PRK02991 70 TGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASP 149 (441)
T ss_pred cCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcch
Confidence 34599999999999887664 699999999999 999999999998875 45777666553
Q ss_pred --------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 027019 70 --------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 70 --------~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
++||++|+||||.|+|++|+.+|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++.
T Consensus 150 ~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~ 227 (441)
T PRK02991 150 EFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESD 227 (441)
T ss_pred hhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc
Confidence 369999999999999999999999999999999999999999999999999994 5999999999998887
Q ss_pred CCeEeeCCCCCCccHHhHHhhHHHHHHHhhCC--------CCcEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCC
Q 027019 142 PDGYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSES 212 (229)
Q Consensus 142 ~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--------~~d~iv~pvG~Gg~~aGi~~~~~~~-~~~~~vigVep~~~ 212 (229)
++++|+++++++..+ +||.|+++||++|+++ .||+||+|+|+||+++|++.++++. .|++|||+|||+++
T Consensus 228 ~~~~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga 306 (441)
T PRK02991 228 PNCYFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 306 (441)
T ss_pred CCeEeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 678999998777766 6999999999999952 2679999999999999999999997 68899999999999
Q ss_pred cccc
Q 027019 213 AVLN 216 (229)
Q Consensus 213 ~~~~ 216 (229)
+++.
T Consensus 307 ~~~~ 310 (441)
T PRK02991 307 PCML 310 (441)
T ss_pred hHHH
Confidence 8763
No 46
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=5.5e-47 Score=329.55 Aligned_cols=193 Identities=23% Similarity=0.318 Sum_probs=176.8
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~al 84 (229)
...+++++..+.+|||++++.+ +||+|+|++|||||||+|++.+++.++.+++. .+.||++|+||||.|+
T Consensus 27 ~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~al 96 (349)
T PRK08813 27 LAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQGV 96 (349)
T ss_pred HHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHHH
Confidence 4566889999999999998764 39999999999999999999999999998875 3359999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
|++|+.+|++|+||||.+.+..|++.++.|||+|+.++. +|+++.+.+++++++. +++|++||+||++++ ||+|++
T Consensus 97 A~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~Tig 172 (349)
T PRK08813 97 AWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQGTVG 172 (349)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHHHHH
Confidence 999999999999999999999999999999999999984 5999999999999886 789999999999995 999999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
+||++| .||+||+|+|+||+++|++.++|+ +.+|||+|||++++++.
T Consensus 173 ~EI~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~ 219 (349)
T PRK08813 173 IELAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMA 219 (349)
T ss_pred HHHHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHH
Confidence 999987 479999999999999999999996 46899999999998753
No 47
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2.9e-47 Score=330.90 Aligned_cols=198 Identities=24% Similarity=0.279 Sum_probs=182.6
Q ss_pred HhhhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 9 RDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 9 ~~~~~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
+++++++|+|||+++++|++..+ .+||+|+|++|||||||||++.+++.+++++| .++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG-----VKAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHHHH
Confidence 57899999999999999988766 79999999999999999999999999999887 4569999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHH
Q 027019 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (229)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei 167 (229)
|+.+|++|++|||++++..|++.++.+||+|+.++. +++++.+.+.+++++. ++|++|++|+.+++ ||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 999999999999999999999999999999999985 5889999999998775 78999999999985 999999999
Q ss_pred HHhhCC-CCcEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc
Q 027019 168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLN 216 (229)
Q Consensus 168 ~~q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~------~~~~vigVep~~~~~~~ 216 (229)
++|+++ .+|+||+|+|+||+++|++.++++.. ++++||+|||.+++++.
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~ 219 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIV 219 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHH
Confidence 999963 69999999999999999999999875 57999999999987663
No 48
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=5.5e-47 Score=329.76 Aligned_cols=186 Identities=23% Similarity=0.255 Sum_probs=167.5
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 89 (229)
.+++++|+|||++.+ +||+|+|++|||||||||++.+++.+|.++| .++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g-----~~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKG-----IKQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcC-----CCEEEEECCcHHHHHHHHHHH
Confidence 478999999999864 5999999999999999999999999999887 456999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHH
Q 027019 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (229)
Q Consensus 90 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ 169 (229)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+. +++. +++|++++.||.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999995 47665443 4443 678899999999986 89999999999
Q ss_pred hhCC-CCcEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCcccc
Q 027019 170 DSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN 216 (229)
Q Consensus 170 q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~------~~~vigVep~~~~~~~ 216 (229)
|+++ .||+||+|+|+|++++|++++|++..+ .+|||+|||++++++.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~ 243 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLC 243 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHH
Confidence 9974 599999999999999999999998764 3799999999988775
No 49
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=4.4e-47 Score=337.68 Aligned_cols=198 Identities=25% Similarity=0.290 Sum_probs=181.3
Q ss_pred HhhhcccCCCcceeccccccCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 9 RDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 9 ~~~~~~~~~TPL~~~~~l~~~~~~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
+.+++++|+|||++++++++.+|. +||+|+|++|||||||||++.+++.+++++| .++||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g-----~~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELG-----VKTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHH
Confidence 368899999999999999888886 9999999999999999999999999999987 4569999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
|+.+|++|+||||++ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+++ ||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHH
Confidence 999999999999997 789999999999999999985 5899999999998876 78888887 899985 99999999
Q ss_pred HHHhhCC-CCcEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCcccc
Q 027019 167 IWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN 216 (229)
Q Consensus 167 i~~q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~------~~~vigVep~~~~~~~ 216 (229)
|++|+++ .||+||+|+|+|++++|++++|++..+ .+|||+|||++++++.
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~ 265 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIV 265 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHH
Confidence 9999976 699999999999999999999998762 3799999999998763
No 50
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1e-46 Score=330.44 Aligned_cols=203 Identities=27% Similarity=0.332 Sum_probs=179.2
Q ss_pred hhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 027019 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (229)
Q Consensus 6 ~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA 85 (229)
+..+++++.+|+|||++++++++..|.+||+|+|++|||||||||++.+++.++.++| .++||++|+||||+|+|
T Consensus 17 ~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~vV~aSsGN~G~alA 91 (352)
T PRK06721 17 ENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEG-----SEAIICASTGNTSASAA 91 (352)
T ss_pred CCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEEEECCcHHHHHHH
Confidence 3455678899999999999999888889999999999999999999999999999887 45799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 86 FIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 86 ~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
++|+.+|++|+||||+.. +..|+++++.+||+|+.+++ +++++.+.+.+++++. ++++++ +.||.+++ ||.|++
T Consensus 92 ~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~ 166 (352)
T PRK06721 92 AYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRIE-GQKTAA 166 (352)
T ss_pred HHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhhh-hhhhHH
Confidence 999999999999999874 78899999999999999984 5888999999998876 566665 56888885 899999
Q ss_pred HHHHHhhCCCCcEEEEccCchhHHHHHH----HHHHhcC-CCcEEEEEeCCCCccccCC
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTVTGAG----RFLKENN-PDIKVYGVEPSESAVLNGG 218 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~----~~~~~~~-~~~~vigVep~~~~~~~~~ 218 (229)
+||++|++..+|+||+|+|+||+++|++ +++|+.+ |++|||+|||++++++..+
T Consensus 167 ~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g 225 (352)
T PRK06721 167 FEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKG 225 (352)
T ss_pred HHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhC
Confidence 9999999767999999999999999854 4555554 8899999999999877654
No 51
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=5.9e-47 Score=340.96 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=179.3
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 89 (229)
.+++++|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|++.| .++|+++|+||+|+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYA-----ANGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcC-----CCEEEEeCCChHHHHHHHHHH
Confidence 378899999999984 66667789999999999999999999999999999887 566999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHH
Q 027019 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (229)
Q Consensus 90 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ 169 (229)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++.||.+++ ||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~e-G~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIGLE-GQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhHhh-hHHHHHHHHHH
Confidence 9999999999999999999999999999999984 5899999999988775 789999999999986 99999999999
Q ss_pred hhCCCCcEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCcccc
Q 027019 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN 216 (229)
Q Consensus 170 q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------~~~vigVep~~~~~~~ 216 (229)
|++ ||+||+|+|+|++++|++++|+++.+ .+|||+|||++++++.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~ 259 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIA 259 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHH
Confidence 995 99999999999999999999999765 2799999999988764
No 52
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=325.79 Aligned_cols=206 Identities=23% Similarity=0.297 Sum_probs=190.2
Q ss_pred cchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
....+.++...+-.|||.+.-.|++..|.++|+|+|++||+||||.|++.+++...-++++ +..|+++|.||||.|
T Consensus 53 ~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a 128 (457)
T KOG1250|consen 53 ISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQA 128 (457)
T ss_pred hhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHH
Confidence 3444566788889999999888999999999999999999999999999999988776664 556999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+++|++++||||..++.-|++.++.+||+|+..+ .+|+++..+|.++++++ ++.|+++|++|+.| +|+.|+
T Consensus 129 ~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTi 204 (457)
T KOG1250|consen 129 AAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTI 204 (457)
T ss_pred HHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchH
Confidence 999999999999999999999999999999999999998 56999999999999997 89999999999998 599999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
+.||++|+...+++|+||||+||+++||+.+++...|+++|||||+++|.+|..
T Consensus 205 g~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~ 258 (457)
T KOG1250|consen 205 GLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNA 258 (457)
T ss_pred HHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHH
Confidence 999999997666699999999999999999999999999999999999998764
No 53
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2e-46 Score=328.01 Aligned_cols=190 Identities=23% Similarity=0.279 Sum_probs=173.6
Q ss_pred hhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 027019 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (229)
Q Consensus 11 ~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 90 (229)
+++++|.|||+++. .+||+|+|++|||||||||++.+++.+|.++| .++||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEG-----INEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcC-----CCEEEEECCCcHHHHHHHHHHH
Confidence 68899999999873 48999999999999999999999999999987 4569999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHh
Q 027019 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (229)
Q Consensus 91 ~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q 170 (229)
+|++|+||||.+++..|+.+++.+||+|+.+++ +++++.+.+.+++++. +++|++++.||.+++ ||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHH
Confidence 999999999999999999999999999999985 3778888888888775 678889999999986 899999999999
Q ss_pred hCCCCcEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC
Q 027019 171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 171 ~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~------~~~~vigVep~~~~~~~~ 217 (229)
++ .||+||+|+|+|++++|++++|++.. +.+|||+|||++++++..
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~ 253 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCK 253 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHh
Confidence 96 89999999999999999999999863 458999999999877753
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=3.8e-46 Score=336.66 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=181.3
Q ss_pred hhhcccCCCcceeccccccC-CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDG-CV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~-~~-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~ 87 (229)
.+++++|+|||++++++++. +| .+||+|+|++|||||||||++..++..+.+.|........|+++|+||+|.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37889999999999999887 77 58999999999999999999999999998876422112469999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHH
Q 027019 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (229)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 166 (229)
|+.+|++|+||||++ .+..|+.+++.+||+|+.+++ +|+++.+.+++++++. ++|+++++ ||.+++ ||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHH
Confidence 999999999999996 788999999999999999995 5999999999988876 68889988 999986 99999999
Q ss_pred HHHhhCCC-CcEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc
Q 027019 167 IWQDSGGK-VDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLN 216 (229)
Q Consensus 167 i~~q~~~~-~d~iv~pvG~Gg~~aGi~~~~~~~~------~~~~vigVep~~~~~~~ 216 (229)
|++|+++. ||+||+|+|+||+++|++++|+++. +.+|||+|||++|+++.
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~ 337 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLY 337 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHH
Confidence 99999765 9999999999999999999999864 34799999999998775
No 55
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=6.1e-45 Score=304.48 Aligned_cols=187 Identities=42% Similarity=0.629 Sum_probs=175.1
Q ss_pred CcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 027019 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (229)
Q Consensus 18 TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~i 97 (229)
|||++++++++..+.+||+|+|++|||||||||++.+++..++++|.+ ++ .+||++|+||+|.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987778999999999999999999999999999998855 33 4599999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCC-CCc
Q 027019 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVD 176 (229)
Q Consensus 98 vvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~-~~d 176 (229)
|+|.+.+..++++++.+|++|+.++.+ ++++.+.+++++++.++++|+++|.|+.+++ ||.++++||.+|++. .+|
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999954 8899999999998866899999999999996 888999999999976 599
Q ss_pred EEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 027019 177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEP 209 (229)
Q Consensus 177 ~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep 209 (229)
+||+|+|+||+++|++.+|++.+|.+|||+|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999999
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=9.2e-45 Score=322.37 Aligned_cols=207 Identities=22% Similarity=0.235 Sum_probs=178.7
Q ss_pred hhhHhh--hcccCCCcceeccccccCCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCC-C-------------
Q 027019 6 AIKRDV--TELIGNTPMVYLNNVVDGCV-ARIAAKLETM-EPCSSVKDRIAYSMIKDAED--KGL-I------------- 65 (229)
Q Consensus 6 ~~~~~~--~~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~-~------------- 65 (229)
.+.+++ ...+++|||++++++++.+| .+||+|+|++ |||||||+|++.+.+.++.. .+. .
T Consensus 31 ~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (399)
T PRK08206 31 KARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEV 110 (399)
T ss_pred HHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHH
Confidence 345666 55899999999999999888 6999999998 59999999999988877653 221 0
Q ss_pred ---CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 027019 66 ---TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (229)
Q Consensus 66 ---~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~ 142 (229)
.++ .+|+++|+||||+|+|++|+.+|++|+||||.++++.|+..++.+||+|+.++. +++++.+.+.+++++.
T Consensus 111 ~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~- 186 (399)
T PRK08206 111 REKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN- 186 (399)
T ss_pred HHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-
Confidence 011 249999999999999999999999999999999999999999999999999994 5899999999988876
Q ss_pred CeEeeC-----CCCC-CccHHhHHhhHHHHHHHhhCC---CCcEEEEccCchhHHHHHHHHHHhcC--CCcEEEEEeCCC
Q 027019 143 DGYLLR-----QFEN-PANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENN--PDIKVYGVEPSE 211 (229)
Q Consensus 143 ~~~~~~-----~~~~-~~~~~~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~aGi~~~~~~~~--~~~~vigVep~~ 211 (229)
+++|++ ||+| +.++.+||.|+++||++|+++ .||+||+|+|+||+++|++.++++.+ +.+|||+|||++
T Consensus 187 g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~g 266 (399)
T PRK08206 187 GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQ 266 (399)
T ss_pred CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCC
Confidence 678886 5765 566668999999999999965 59999999999999999999999884 479999999999
Q ss_pred Ccccc
Q 027019 212 SAVLN 216 (229)
Q Consensus 212 ~~~~~ 216 (229)
|+++.
T Consensus 267 s~~l~ 271 (399)
T PRK08206 267 ADCLY 271 (399)
T ss_pred CchHH
Confidence 98874
No 57
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.7e-43 Score=307.76 Aligned_cols=196 Identities=21% Similarity=0.228 Sum_probs=174.7
Q ss_pred hHhhhcccCCCcceeccccccCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 8 KRDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 8 ~~~~~~~~~~TPL~~~~~l~~~~~~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
.+.+...+++|||++++++...++. +||+|+|++|||||||||++.+++.++.++| ..+||++|+||||+|+|+
T Consensus 14 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~vv~aSsGN~g~a~A~ 88 (328)
T TIGR00260 14 KDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELG-----NDTVLCASTGNTGAAAAA 88 (328)
T ss_pred hhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHH
Confidence 3467888999999999999888886 9999999999999999999999999999887 456999999999999999
Q ss_pred HHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCC--CccHHhHHhhH
Q 027019 87 IAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFEN--PANPKIHYETT 163 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~ 163 (229)
+|+.+|++|+||||+. .+..|+..++.+||+|+.+++ +++++.+.+++++++. +++++++ .| |.+++ ||.|+
T Consensus 89 ~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~~~-g~~t~ 163 (328)
T TIGR00260 89 YAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYRLE-GQKTY 163 (328)
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeEee-eehhH
Confidence 9999999999999998 899999999999999999995 5899999999988775 4555554 34 77775 88999
Q ss_pred HHHHHHhhCC-CCcEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccc
Q 027019 164 GPEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVL 215 (229)
Q Consensus 164 a~Ei~~q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~-------~~~~~vigVep~~~~~~ 215 (229)
++||++|+++ .+|+||+|+|+||+++|++.+|++. .| +|++|||++++++
T Consensus 164 ~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~ 221 (328)
T TIGR00260 164 AFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADI 221 (328)
T ss_pred HHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChH
Confidence 9999999974 7999999999999999999999974 34 9999999999554
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=8e-43 Score=307.29 Aligned_cols=205 Identities=19% Similarity=0.236 Sum_probs=174.5
Q ss_pred hhHhhhcccCCCcceeccccccCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCC--
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAEDK----------------GLIT-- 66 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~~p-tGS~K~R~a~~~l~~a~~~----------------g~~~-- 66 (229)
.+.++ .++.+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.+.
T Consensus 13 ~~~~~-~~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKI-PGYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhC-CCCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 34455 4559999999999999999 599999999985 9999999999998887553 1111
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEe
Q 027019 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL 146 (229)
Q Consensus 67 ~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (229)
.+..+||++|+||||+|+|++|+.+|++|+||||++++..|+..++.+||+|+.+++ +++++.+.+.+++++. ++++
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~ 168 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVV 168 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEE
Confidence 124569999999999999999999999999999999999999999999999999984 5999999999988776 6788
Q ss_pred eC-----CCCC--CccHHhHHhhHHHHHHHhhCC----CCcEEEEccCchhHHHHHHHHHHhcCC-C-cEEEEEeCCCCc
Q 027019 147 LR-----QFEN--PANPKIHYETTGPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNP-D-IKVYGVEPSESA 213 (229)
Q Consensus 147 ~~-----~~~~--~~~~~~g~~t~a~Ei~~q~~~----~~d~iv~pvG~Gg~~aGi~~~~~~~~~-~-~~vigVep~~~~ 213 (229)
++ +|+| |..+ +||.|+++||++|++. .||+||+|+|+||+++|++.++++..+ + ++||+|||++|+
T Consensus 169 ~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~ 247 (376)
T TIGR01747 169 VQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKAD 247 (376)
T ss_pred eccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 76 3554 4434 6999999999999952 799999999999999999999977643 3 699999999999
Q ss_pred ccc
Q 027019 214 VLN 216 (229)
Q Consensus 214 ~~~ 216 (229)
++.
T Consensus 248 ~~~ 250 (376)
T TIGR01747 248 CLY 250 (376)
T ss_pred HHH
Confidence 885
No 59
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=284.72 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=186.9
Q ss_pred ccchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 027019 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~ 82 (229)
.....++|+...+..||.+.++.+-+..|.+||+|+|.+|-+|+||.|+|.+.+..+.++.. .+.+++.||||||.
T Consensus 11 dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaq 86 (323)
T KOG1251|consen 11 DVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQ 86 (323)
T ss_pred HHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHH
Confidence 44567899999999999999999999999999999999999999999999999988874432 55699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhh
Q 027019 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (229)
Q Consensus 83 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (229)
|+|++|+..|+|++||||.+.+..|+..++.|||+|+++++. .++..+.+.++.++. +.+.++||++|..+ +|+.|
T Consensus 87 AlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgT 162 (323)
T KOG1251|consen 87 ALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGT 162 (323)
T ss_pred HHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccch
Confidence 999999999999999999999999999999999999999964 556777888998887 78999999999988 69999
Q ss_pred HHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027019 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (229)
Q Consensus 163 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~ 215 (229)
+|.||++|.+ .+|.+|+|+|+||+++|++.+.+...|+++|++|||+++...
T Consensus 163 iA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~ 214 (323)
T KOG1251|consen 163 IALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDG 214 (323)
T ss_pred HHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchH
Confidence 9999999994 999999999999999999999999999999999999887543
No 60
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.4e-42 Score=302.61 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=169.2
Q ss_pred hhcccC-CCcceeccccccCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 11 ~~~~~~-~TPL~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
...++| +|||++++++++.+ +.+||+|+|++|||||||+|.+..++..|++.|+ ...|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 345666 79999999999888 5899999999999999999999999999998884 34466789999999999999
Q ss_pred HHcCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEeeCC-C----CCCccHHh
Q 027019 89 AARGYNLIIVMPSTCSM---ERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQ-F----ENPANPKI 158 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~---~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~-~----~~~~~~~~ 158 (229)
+.+|++|+||||+.... .++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+.+ + ..|.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999985433 567899999999999984 3478898888854 4555445666532 2 12345556
Q ss_pred HHhhHHHHHHHhhC----CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCC
Q 027019 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--------SAVLNGGQR 220 (229)
Q Consensus 159 g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~--------~~~~~~~~~ 220 (229)
|+++++.|+.+|+. ..||+||+|+|+||+++|++.+|++ .+++|||+|||.+ ++++..+.+
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~ 283 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKP 283 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCc
Confidence 99999999999972 3699999999999999999999986 4889999999998 777766544
No 61
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=2.7e-42 Score=305.77 Aligned_cols=202 Identities=20% Similarity=0.204 Sum_probs=170.4
Q ss_pred cccCCCcceeccccccCCC-ceEEEEeCCCC-CCCchhhHHHHHHHHHHHH--cCCC--------------C--CCCeEE
Q 027019 13 ELIGNTPMVYLNNVVDGCV-ARIAAKLETME-PCSSVKDRIAYSMIKDAED--KGLI--------------T--PGKTTL 72 (229)
Q Consensus 13 ~~~~~TPL~~~~~l~~~~~-~~i~~K~E~~~-ptGS~K~R~a~~~l~~a~~--~g~~--------------~--~g~~~v 72 (229)
..+.+|||++++.|++.+| .+||+|+|++| ||||||+|++.+.+..+.+ .|.. . ....+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 4668999999999999888 69999999998 4999999999999987633 2210 0 012369
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeC----
Q 027019 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLR---- 148 (229)
Q Consensus 73 v~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 148 (229)
|++|+||||+|+|++|+.+|++|+||||++++..|+..++.+||+|+.++. +++++.+.+++++++. +++|++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccc
Confidence 999999999999999999999999999999999999999999999999984 5899999999998876 678875
Q ss_pred -CCCCC-ccHHhHHhhHHHHHHHhhC----CCCcEEEEccCchhHHHHHHHHHHhc-CCC-cEEEEEeCCCCccccC
Q 027019 149 -QFENP-ANPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKEN-NPD-IKVYGVEPSESAVLNG 217 (229)
Q Consensus 149 -~~~~~-~~~~~g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~~-~~~-~~vigVep~~~~~~~~ 217 (229)
+|+|. .....||.|+++||++|++ ..||+||+|+|+||+++|++.++++. .+. ++||+|||++++++..
T Consensus 194 ~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~ 270 (396)
T TIGR03528 194 EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYR 270 (396)
T ss_pred cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHH
Confidence 56552 2333699999999999996 36999999999999999999988544 344 5999999999998853
No 62
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.4e-42 Score=300.72 Aligned_cols=205 Identities=24% Similarity=0.218 Sum_probs=174.0
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT--SGNT 80 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s--~GN~ 80 (229)
+..++++...+++|||++++.+++..|.+||+|+|++||+ ||||+|++.+++.+++++| .++||++| +|||
T Consensus 3 ~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g-----~~~vvt~g~s~gN~ 77 (331)
T PRK03910 3 LARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQG-----ADTLITAGAIQSNH 77 (331)
T ss_pred cCcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcC-----CCEEEEcCcchhHH
Confidence 4456778899999999999999887888999999999996 5999999999999999887 45688875 4899
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHcCCEEEEECCCCCHHH-HHHHHHHHHHhCCCeE-eeCCC
Q 027019 81 GVGLAFIAAARGYNLIIVMPSTCSM--------ERRIVLRALGAEIILADSALRFEE-ILEKGEEILKKTPDGY-LLRQF 150 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~~~~~--------~~~~~l~~~Ga~V~~v~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~ 150 (229)
|.|+|++|+.+|++|++|||...+. .++..++.+||+|+.++.+++..+ +...++++.++.+..+ +.+++
T Consensus 78 g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 157 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGG 157 (331)
T ss_pred HHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCC
Confidence 9999999999999999999998765 456899999999999986433333 3455666666543333 45678
Q ss_pred CCCccHHhHHhhHHHHHHHhhCC---CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027019 151 ENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (229)
Q Consensus 151 ~~~~~~~~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~ 215 (229)
.|+.+.+ ||.+++.||++|+++ .||+||+|+|||||++|+++++++.+|+++||+|||++++.+
T Consensus 158 ~~~~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~ 224 (331)
T PRK03910 158 SNALGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAE 224 (331)
T ss_pred CCchhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 8999986 889999999999963 699999999999999999999999999999999999988654
No 63
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=8.2e-42 Score=301.50 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=162.3
Q ss_pred hhcccC-CCcceeccccccCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 11 ~~~~~~-~TPL~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
..+++| +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 345677 59999999999988 5899999999999999999999999999999884 44466688999999999999
Q ss_pred HHcCCeEEEEeCCCC-C--HHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEee-CCCCC----CccHHh
Q 027019 89 AARGYNLIIVMPSTC-S--MERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFEN----PANPKI 158 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~-~--~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~~~ 158 (229)
+++|++|+||||+.. + ..++.+|+.+||+|+.++. +.+++++.+.+.+ +.++.++.+|+ .+..+ |.++..
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999853 3 3577889999999999984 3467777666654 45553454554 33322 344556
Q ss_pred HHhhHHHHHHHhhC----CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027019 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (229)
Q Consensus 159 g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~ 212 (229)
||.|++.||.+|+. ..||+||+|+|+|++++|++.+|+. .|++|||||||.++
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~ 263 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 263 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCC
Confidence 99999999999973 3699999999999999999999976 78899999999985
No 64
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.1e-41 Score=303.20 Aligned_cols=204 Identities=22% Similarity=0.272 Sum_probs=167.4
Q ss_pred hhhHhhhcccCCCcceeccccccCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHH
Q 027019 6 AIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGV 82 (229)
Q Consensus 6 ~~~~~~~~~~~~TPL~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~s~GN~g~ 82 (229)
++.+.+.+..++|||+++++|++.++ .+||+|+|++|||||||+|++..++.+++++|. +++++ +|+||||.
T Consensus 57 ~v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~ 131 (419)
T TIGR01415 57 EVLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGS 131 (419)
T ss_pred HHHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHH
Confidence 44555555556899999999998776 699999999999999999999999999999883 34665 68899999
Q ss_pred HHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCCCHHH------------------HHHHHHHHHHhC
Q 027019 83 GLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALRFEE------------------ILEKGEEILKKT 141 (229)
Q Consensus 83 alA~~a~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~~~~~~~------------------~~~~a~~~~~~~ 141 (229)
|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.+ +++ +++.+.+.+++.
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~ 209 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSD 209 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhC
Confidence 999999999999999999854 567899999999999999853 332 355666676664
Q ss_pred C-CeEeeCCCCCCccHHhHHhhHHHHHHHhhCC---CCcEEEEccCchhHHHHHHHHHHhc----CCCcEEEEEeCCCCc
Q 027019 142 P-DGYLLRQFENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKEN----NPDIKVYGVEPSESA 213 (229)
Q Consensus 142 ~-~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~aGi~~~~~~~----~~~~~vigVep~~~~ 213 (229)
+ ..|+.+++.|+ ...||.++++||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|||++|+
T Consensus 210 ~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~ 287 (419)
T TIGR01415 210 EDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACP 287 (419)
T ss_pred CCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCh
Confidence 4 45666666553 346999999999999954 4999999999999999999888432 257999999999999
Q ss_pred cccCC
Q 027019 214 VLNGG 218 (229)
Q Consensus 214 ~~~~~ 218 (229)
++..+
T Consensus 288 ~l~~g 292 (419)
T TIGR01415 288 TLTRG 292 (419)
T ss_pred hhhcC
Confidence 88754
No 65
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.2e-41 Score=294.10 Aligned_cols=192 Identities=23% Similarity=0.247 Sum_probs=162.6
Q ss_pred ccCCCcceeccccccCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHH
Q 027019 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAA 89 (229)
Q Consensus 14 ~~~~TPL~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--s~GN~g~alA~~a~ 89 (229)
...+|||+++++++...+.+||+|+|++||+ ||||+|++.+++.+++++| .++||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g-----~~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKG-----ADTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcC-----CCEEEEcCCchhHHHHHHHHHHH
Confidence 4578999999999888888999999999997 9999999999999999887 4669998 55999999999999
Q ss_pred HcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH----hCC-CeEeeCCCCCCccHHhHHhhH
Q 027019 90 ARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILK----KTP-DGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 90 ~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 163 (229)
.+|++|++|||... +..+..+++.+||+|+.++.. ++.+..+.+.++++ +.+ .+++.+++.||.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 455677789999999999852 34444445444433 222 245567888999886 67789
Q ss_pred HHHHHHhhCC--CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027019 164 GPEIWQDSGG--KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (229)
Q Consensus 164 a~Ei~~q~~~--~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~ 212 (229)
++||++|++. .+|+||+|+|||||++|+++++|+.+|+++||+|||+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~ 207 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 9999999963 799999999999999999999999999999999998765
No 66
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.5e-41 Score=313.06 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=168.6
Q ss_pred hhcccC-CCcceeccccccC----CC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 11 VTELIG-NTPMVYLNNVVDG----CV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 11 ~~~~~~-~TPL~~~~~l~~~----~~--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
...++| +|||+++++|++. +| .+||+|+|++|||||||+|.+..++..|++.|+ .+.|+++|+||||+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 456788 9999999998753 44 799999999999999999999999999999985 456889999999999
Q ss_pred HHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEECC-CCCHHHHHHHH-HHHHHhCC-CeEeeCCCCCC----
Q 027019 84 LAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTP-DGYLLRQFENP---- 153 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~---~~~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~---- 153 (229)
+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.++. ..+++++.+.+ +++.++.+ .+|+++++.|+
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 367899999999999999984 33677876655 55665533 45778887654
Q ss_pred ccHHhHHhhHHHHHHHhhCC-----CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 027019 154 ANPKIHYETTGPEIWQDSGG-----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213 (229)
Q Consensus 154 ~~~~~g~~t~a~Ei~~q~~~-----~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~ 213 (229)
.++.+||.++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|++|||||||.++.
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g 538 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNG 538 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCC
Confidence 34668999999999999842 699999999999999999999976 688999999999863
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=4.1e-41 Score=297.64 Aligned_cols=199 Identities=20% Similarity=0.287 Sum_probs=161.3
Q ss_pred HhhhcccC-CCcceeccccccCC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 027019 9 RDVTELIG-NTPMVYLNNVVDGC------VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (229)
Q Consensus 9 ~~~~~~~~-~TPL~~~~~l~~~~------~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g 81 (229)
..+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..|++.|+ ...|+++|+||||
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG 132 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHG 132 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHH
Confidence 45667886 89999999999876 4899999999999999999999999888888773 3334455689999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEee-CCCC--CC
Q 027019 82 VGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLL-RQFE--NP 153 (229)
Q Consensus 82 ~alA~~a~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a-~~~~~~~~~~~~~-~~~~--~~ 153 (229)
+|+|++|+.+|++|+||||+.. ...|+.+|+.+||+|+.++. +.+++++...+ ++++++.++.+|+ .+.. +|
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P 212 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 212 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence 9999999999999999999853 34567799999999999953 35688887444 5576653444554 3322 22
Q ss_pred --ccHHhHHhhHHHHHHHhh----CCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027019 154 --ANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (229)
Q Consensus 154 --~~~~~g~~t~a~Ei~~q~----~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~ 212 (229)
.+...++.+++.||.+|+ +..||+||+|+|+||+++|++++|+. .|++|||+|||.++
T Consensus 213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 334468999999998776 34699999999999999999999975 68899999999987
No 68
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3e-41 Score=297.17 Aligned_cols=203 Identities=20% Similarity=0.199 Sum_probs=163.5
Q ss_pred Hhhhccc-CCCcceeccccccCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHH
Q 027019 9 RDVTELI-GNTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLA 85 (229)
Q Consensus 9 ~~~~~~~-~~TPL~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~s~GN~g~alA 85 (229)
.....++ .+|||++++++++.+ +.+||+|+|++|||||||+|.+..++..+.++|. ..+++ +|+||||+|+|
T Consensus 25 ~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA 99 (365)
T cd06446 25 ELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATA 99 (365)
T ss_pred HHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHH
Confidence 3334444 489999999999877 5799999999999999999999999999988873 33555 68999999999
Q ss_pred HHHHHcCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHH-HHhC-CCeEeeCCC----CCCcc
Q 027019 86 FIAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADSA-LRFEEILEKGEEI-LKKT-PDGYLLRQF----ENPAN 155 (229)
Q Consensus 86 ~~a~~~g~~~~ivvp~~~~---~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~----~~~~~ 155 (229)
++|+.+|++|+||||...+ ..++.+++.+||+|+.++.. +.+++++..+.+. .++. +.+|+++++ .++.+
T Consensus 100 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~ 179 (365)
T cd06446 100 TACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNM 179 (365)
T ss_pred HHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHH
Confidence 9999999999999998643 35778899999999999853 2456666555444 3332 234544443 22346
Q ss_pred HHhHHhhHHHHHHHhhC----CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027019 156 PKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 156 ~~~g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~~ 217 (229)
+++||.|+++||++|+. ..||+||+|+|+||+++|++++++. .+++|||+|||++|+++.+
T Consensus 180 ~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~ 244 (365)
T cd06446 180 VRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETG 244 (365)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccc
Confidence 67899999999999985 3699999999999999999998877 4689999999999988753
No 69
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=3.4e-41 Score=298.41 Aligned_cols=196 Identities=21% Similarity=0.242 Sum_probs=160.4
Q ss_pred hcccC-CCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 027019 12 TELIG-NTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (229)
Q Consensus 12 ~~~~~-~TPL~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~ 89 (229)
..+++ +|||++++++++.+| .+||+|+|++|||||||+|.+..++..++++|. ...|+++|+||||+|+|++|+
T Consensus 44 ~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~ 119 (385)
T TIGR00263 44 RNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAAA 119 (385)
T ss_pred HHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHH
Confidence 34454 899999999998877 799999999999999999999999999988773 344557999999999999999
Q ss_pred HcCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEECCC-CCHHHHHHH-HHHHHHhCCCeEee-CCCCC----CccHHhH
Q 027019 90 ARGYNLIIVMPST-CSM--ERRIVLRALGAEIILADSA-LRFEEILEK-GEEILKKTPDGYLL-RQFEN----PANPKIH 159 (229)
Q Consensus 90 ~~g~~~~ivvp~~-~~~--~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~-a~~~~~~~~~~~~~-~~~~~----~~~~~~g 159 (229)
++|++|+||||+. .+. .++++|+.+||+|+.++.. +.++++.+. +++++++.++.+|+ +++.| +.++..|
T Consensus 120 ~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~ 199 (385)
T TIGR00263 120 LLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDF 199 (385)
T ss_pred HcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHH
Confidence 9999999999985 333 5688999999999999853 457777544 44555554455555 44443 2455679
Q ss_pred HhhHHHHHHHhhC----CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027019 160 YETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (229)
Q Consensus 160 ~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~ 212 (229)
|+|++.||++|+. ..||+||+|+|+||+++|++.++.. .|++|||+|||+++
T Consensus 200 ~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 200 QSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred hhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 9999999999973 2589999999999999999998865 68999999999986
No 70
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2.6e-41 Score=290.59 Aligned_cols=194 Identities=39% Similarity=0.542 Sum_probs=164.3
Q ss_pred hhcccCCCcceecc--ccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 11 VTELIGNTPMVYLN--NVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 11 ~~~~~~~TPL~~~~--~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
|+.++++|||++++ .++...+.+||+|+|++|||||||+|++.+++.++++++ .++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~-----~~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKG-----GRTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTT-----TSEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccc-----cceeeeeccCCceehhhhhh
Confidence 57899999999975 455567789999999999999999999999999998886 56699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh-------CCCeEeeCCCCCCccHHhHHh
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK-------TPDGYLLRQFENPANPKIHYE 161 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 161 (229)
+.+|++|++|+|++.+..++++++.+||+|+.+..+ ++++.+.+.+++++ .++. ++|+ ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999999853 44444444333322 1122 6777 5555557999
Q ss_pred hHHHHHHHhhCCCCcE--EEEccCchhHHHHHHHHHHh--cCCCcEEEEEeCCCCcccc
Q 027019 162 TTGPEIWQDSGGKVDA--FISGIGTGGTVTGAGRFLKE--NNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 162 t~a~Ei~~q~~~~~d~--iv~pvG~Gg~~aGi~~~~~~--~~~~~~vigVep~~~~~~~ 216 (229)
+++.||++|++ .+|+ ||+|+|+|++++|++.+++. . |++|||+|||.+++++.
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~ 207 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLY 207 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHH
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCcccc
Confidence 99999999997 6665 99999999999999999999 7 89999999999998775
No 71
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.3e-41 Score=292.97 Aligned_cols=206 Identities=18% Similarity=0.187 Sum_probs=170.7
Q ss_pred chhhHhhhcccCCCcceeccccccCCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CC
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~--~~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--s~ 77 (229)
++.++++.+.+++|||++++++++..| .+||+|+|++||+ ||||||.+.+++.+++++| ..+|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G-----~~~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQG-----ADTLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcC-----CCEEEEeCCCc
Confidence 456678899999999999999888777 6999999999987 8889999999999999988 4668877 77
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEe-
Q 027019 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYL- 146 (229)
Q Consensus 78 GN~g~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~- 146 (229)
||||+|+|++|+++|++|++|++..++ ..++..++.+||+|+.++.+. .+.++++.+.+..++..+..|
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999876544 236778999999999998641 234666677776666434344
Q ss_pred eCCCCC--CccHHhHHhhHHHHHHHh---hCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 147 LRQFEN--PANPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 147 ~~~~~~--~~~~~~g~~t~a~Ei~~q---~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
++.+.+ +... .||.++++||++| ++.++|+||+|+|||||++|++.++++..|++|||+|||++++.+.
T Consensus 158 ~~~~~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~ 231 (337)
T PRK12390 158 IPAGASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQT 231 (337)
T ss_pred eCCcCCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHH
Confidence 544432 4444 4899999999998 4447999999999999999999999999999999999999987664
No 72
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.6e-40 Score=296.26 Aligned_cols=201 Identities=23% Similarity=0.262 Sum_probs=164.5
Q ss_pred hcccCCCcceeccccccCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHH
Q 027019 12 TELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIA 88 (229)
Q Consensus 12 ~~~~~~TPL~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~s~GN~g~alA~~a 88 (229)
...+++|||+++++|++.+| .+||+|+|++|||||||+|++..++..++++|. +.+++ .|+||||+|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 45678999999999998776 699999999999999999999999999999883 34665 56899999999999
Q ss_pred HHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCeEeeCC
Q 027019 89 AARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDGYLLRQ 149 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 149 (229)
+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.+.+ ...+++.+.+.+++.++.+|...
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 999999999999743 56789999999999999985311 11256667777766555555544
Q ss_pred CCCCccHHhHHhhHHHHHHHhhC---CCCcEEEEccCchhHHHHHHHHHHh---cC-CCcEEEEEeCCCCccccCC
Q 027019 150 FENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKE---NN-PDIKVYGVEPSESAVLNGG 218 (229)
Q Consensus 150 ~~~~~~~~~g~~t~a~Ei~~q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~---~~-~~~~vigVep~~~~~~~~~ 218 (229)
+. ..+...||.++++||++|+. ..||+||+|+|+||+++|++.+|.. .+ +++|||+|||++|+++..+
T Consensus 227 s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g 301 (427)
T PRK12391 227 SV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKG 301 (427)
T ss_pred CC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccc
Confidence 32 23455799999999999985 3699999999999999999997732 34 7899999999999988653
No 73
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=7.1e-41 Score=292.13 Aligned_cols=205 Identities=20% Similarity=0.201 Sum_probs=170.7
Q ss_pred chhhHhhhcccCCCcceeccccccCCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CC
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVA--RIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~--~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--s~ 77 (229)
+..++++.+.+++|||++++++++.+|. +||+|+|++||+ ||||+|.+.+++.+|+++| .++|+++ |+
T Consensus 2 ~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G-----~~~vvs~ggs~ 76 (337)
T TIGR01274 2 LSRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQG-----CTTLVSIGGIQ 76 (337)
T ss_pred CCcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcC-----CCEEEECCCCc
Confidence 4456788999999999999999988763 999999999975 8889999999999999988 5668876 66
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhC-CCeEe
Q 027019 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKT-PDGYL 146 (229)
Q Consensus 78 GN~g~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~-~~~~~ 146 (229)
||||+|+|++|+++|++|+||||+..+ ..|+.+++.+||+|+.++... ...+....+.+..++. +..|+
T Consensus 77 gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (337)
T TIGR01274 77 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYP 156 (337)
T ss_pred chHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEE
Confidence 999999999999999999999998542 578999999999999998531 1235555555555554 33356
Q ss_pred eCCCC--CCccHHhHHhhHHHHHHHhh---CCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027019 147 LRQFE--NPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (229)
Q Consensus 147 ~~~~~--~~~~~~~g~~t~a~Ei~~q~---~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~ 215 (229)
+..+. ++... .||.++++||++|+ +..||+||+|+|+|+|++|+++++++..+++|||+|||++++.+
T Consensus 157 i~~~~~~~~~~~-~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~ 229 (337)
T TIGR01274 157 IPAGCSDHPLGG-LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQ 229 (337)
T ss_pred eCCCCCCCccch-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 55542 45656 48999999999995 34799999999999999999999999999999999999999765
No 74
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=279.33 Aligned_cols=204 Identities=41% Similarity=0.663 Sum_probs=182.1
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 027019 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (229)
Q Consensus 9 ~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a 88 (229)
+-+...+|+|||++++.|++..|++|+.|.|.+||.||-|||.|.++++.|++.|++.|+.. |++.|+||+|.++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhh
Confidence 35677899999999999999999999999999999999999999999999999999999855 99999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCC--C---H-HHHHHHHHHHHHhCC--CeEeeCCCCCCccHHhHH
Q 027019 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL--R---F-EEILEKGEEILKKTP--DGYLLRQFENPANPKIHY 160 (229)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~---~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~ 160 (229)
..+|++|+|+||++.+.+|.+.++.+||+|..|++.. + | ..+.+.|.+...+.. ..+|.+||+|++|+.+||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 9999999999999999999999999999999998632 1 2 233444444433321 247789999999999999
Q ss_pred hhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCc
Q 027019 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-IKVYGVEPSESA 213 (229)
Q Consensus 161 ~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~-~~vigVep~~~~ 213 (229)
.++++||+.|..+.+|.+++++|||||++|+.+++|+..+. ++++..+|.+|-
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSG 253 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSG 253 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999998876 899999999983
No 75
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.8e-41 Score=292.93 Aligned_cols=201 Identities=19% Similarity=0.224 Sum_probs=168.9
Q ss_pred chhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChH
Q 027019 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLI--EVTSGNT 80 (229)
Q Consensus 5 ~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~~s~GN~ 80 (229)
++.++++++.+++|||++++++++..|.+||+|+|++||+ ||||+|++.+++.++.++| .++|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G-----~~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRG-----ADVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcC-----CCEEEEeCccHHHH
Confidence 5667899999999999999999887888999999999996 8999999999999999888 34566 5888999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEECCCCC---HHHHHHHHHHHHHhCCCeEe-eCCCCCCcc
Q 027019 81 GVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILADSALR---FEEILEKGEEILKKTPDGYL-LRQFENPAN 155 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~~~~~~-~~~~l~~~Ga~V~~v~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 155 (229)
|+|+|++|+.+|++|++|||...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..|+ .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999865433 55677899999998874222 33556667777665544555 466788888
Q ss_pred HHhHHhhHHHHHHHhhC---CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027019 156 PKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (229)
Q Consensus 156 ~~~g~~t~a~Ei~~q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~ 211 (229)
.. ||.+.+.||++|++ .++|+||+|+|||||++|++.+++..+|++|||+|+|.+
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 86 66556669999985 379999999999999999999999999999999999976
No 76
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=6.8e-41 Score=288.94 Aligned_cols=193 Identities=24% Similarity=0.262 Sum_probs=160.5
Q ss_pred CcceeccccccCC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHH
Q 027019 18 TPMVYLNNVVDGC--VARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAAA 90 (229)
Q Consensus 18 TPL~~~~~l~~~~--~~~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--s~GN~g~alA~~a~~ 90 (229)
|||++++++++.+ +.+||+|+|++||+ ||||+|++.+++.+++++| .++||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g-----~~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKG-----ADTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcC-----CCEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998876 57999999999998 6779999999999999887 4568888 579999999999999
Q ss_pred cCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHH-HHHHhCCCeEe-eCCC-CCCccHH
Q 027019 91 RGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGE-EILKKTPDGYL-LRQF-ENPANPK 157 (229)
Q Consensus 91 ~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~-~~~~~~~~~~~-~~~~-~~~~~~~ 157 (229)
+|++|++|||.+.+ ..|+++++.+||+|+.++.+. ...++.+.+. ++.++.+..|+ .+++ +||.+.+
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999776 468899999999999998642 1122333333 33333323344 4555 4999986
Q ss_pred hHHhhHHHHHHHhhCC---CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027019 158 IHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216 (229)
Q Consensus 158 ~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~~~~ 216 (229)
||.+++.||++|++. .+|+||+|+|||||++|+++++++.++++|||+|||++++.+.
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~ 216 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKT 216 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHH
Confidence 899999999999854 6999999999999999999999999999999999999987653
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=5.3e-41 Score=297.51 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=167.1
Q ss_pred hcccCCCcceeccccccCCCc-eEEEEeCC-------CCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 027019 12 TELIGNTPMVYLNNVVDGCVA-RIAAKLET-------MEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (229)
Q Consensus 12 ~~~~~~TPL~~~~~l~~~~~~-~i~~K~E~-------~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a 83 (229)
+...+.|||+++++|++++|. +||+|+|. +|||||||||++.+++.++.++| .+.||++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g-----~~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERG-----GKTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcC-----CCEEEEECCCHHHHH
Confidence 456778999999999998987 99995555 89999999999999999999887 566999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (229)
+|++|+++|++|+||||++.+..+...++.+|++|+.+++ +|+++.+.+++++++. +++..+++.||... +|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~i-eG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVARR-DGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHHH-hhHHHH
Confidence 9999999999999999998644333335789999999984 5999999999998875 55555566788877 499999
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcC-------CCcEEEEEeCCCCcccc
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN-------PDIKVYGVEPSESAVLN 216 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-------~~~~vigVep~~~~~~~ 216 (229)
++||++|++..||+||+|+|+|.+..|++.+++++. .-+|+++|||++|+++.
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 999999997459999999999988899999887732 22588999999998874
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4e-39 Score=299.04 Aligned_cols=196 Identities=23% Similarity=0.238 Sum_probs=161.8
Q ss_pred hcccC-CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 027019 12 TELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (229)
Q Consensus 12 ~~~~~-~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 90 (229)
..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+.
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 44555 899999999998888999999999999999999999999998988873 3445578999999999999999
Q ss_pred cCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEeeCCCC---C--CccHHhHH
Q 027019 91 RGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQFE---N--PANPKIHY 160 (229)
Q Consensus 91 ~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~~~g~ 160 (229)
+|++|+||||... +..++.+|+.+||+|+.++. ..++.++.+.+.+ +..+.++.+|+.++. + |.++..||
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999764 35678899999999999984 2457777655544 434445666665432 2 34444689
Q ss_pred hhHHHHHHHhhC----CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027019 161 ETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (229)
Q Consensus 161 ~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~ 212 (229)
.|++.||.+|+. ..||+||+|+|+||+++|++.+|+. .|++|||||||.++
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 999999999984 2699999999999999999999964 78899999999985
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=254.28 Aligned_cols=200 Identities=24% Similarity=0.240 Sum_probs=179.6
Q ss_pred hhhcccCCCcceeccccccCCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 027019 10 DVTELIGNTPMVYLNNVVDGCVA---RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (229)
Q Consensus 10 ~~~~~~~~TPL~~~~~l~~~~~~---~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~ 86 (229)
..++..+.||+++.+++...++. ++|+|.|..|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 55788999999999888887763 59999999999999999999999999999873 56999999999999999
Q ss_pred HHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHH
Q 027019 87 IAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (229)
Q Consensus 87 ~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 165 (229)
++.+.|++|+|++|.+ ++..|+.++..+|++++.+++ +||||++.+++++++. ++++....-||...+ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999997 999999999999999999995 5999999999999865 557777777888885 9999999
Q ss_pred HHHHhhC-CCCcEEEEccCchhHHHHHHHHHHhcCCC------cEEEEEeCCCCccccCC
Q 027019 166 EIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPD------IKVYGVEPSESAVLNGG 218 (229)
Q Consensus 166 Ei~~q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~------~~vigVep~~~~~~~~~ 218 (229)
|+++|++ ..||+|++|+|+||.+.|++.++++..|. ++..+||++++.++...
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~ 279 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYA 279 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhh
Confidence 9999997 47999999999999999999999987643 68899999998877644
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=210.90 Aligned_cols=205 Identities=21% Similarity=0.221 Sum_probs=170.6
Q ss_pred ccchhhHhhhcccCCCcceeccccccCCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC--C
Q 027019 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS--G 78 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~TPL~~~~~l~~~~~~~i~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~--G 78 (229)
+++..|+|+....++|||.+++++++.+|.+||+||||+.+ .|++|.|+..+++.+|+.+| .+++|+.++ +
T Consensus 1 ~~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g-----~dTlvT~GgiQS 75 (323)
T COG2515 1 MNLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKG-----ADTLVTYGGIQS 75 (323)
T ss_pred CCcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcC-----CcEEEEecccch
Confidence 45778899999999999999999999999999999999976 78999999999999999887 788999998 9
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCC----CHHHHHHHHHcCCEEEEECCCCCH--HHHHHHHHHHHHhCCCeEeeCC--C
Q 027019 79 NTGVGLAFIAAARGYNLIIVMPSTC----SMERRIVLRALGAEIILADSALRF--EEILEKGEEILKKTPDGYLLRQ--F 150 (229)
Q Consensus 79 N~g~alA~~a~~~g~~~~ivvp~~~----~~~~~~~l~~~Ga~V~~v~~~~~~--~~~~~~a~~~~~~~~~~~~~~~--~ 150 (229)
||.+++|++|+++|++|+.++.... ...++...+.+|+++..++...++ ....+...+..++.++..|+-+ .
T Consensus 76 Nh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG 155 (323)
T COG2515 76 NHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG 155 (323)
T ss_pred hHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCC
Confidence 9999999999999999999997754 123566667899999999975444 3333344444444445444333 3
Q ss_pred CCCccHHhHHhhHHHHHHHhhC--CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 027019 151 ENPANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213 (229)
Q Consensus 151 ~~~~~~~~g~~t~a~Ei~~q~~--~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~ 213 (229)
.||... .||...+.||.+|.. -.+|+|||++|||||.||+..++...+++++|||+.....+
T Consensus 156 ~~~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~ 219 (323)
T COG2515 156 SSPLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADP 219 (323)
T ss_pred cCcccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCH
Confidence 466555 499999999999986 57999999999999999999999999999999999887654
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=2.4e-29 Score=210.23 Aligned_cols=195 Identities=21% Similarity=0.264 Sum_probs=161.0
Q ss_pred hcccC-CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 027019 12 TELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (229)
Q Consensus 12 ~~~~~-~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~ 90 (229)
..+.| +|||...++|++.++.+||+||||+|+||+||...+...+.-|++.|+ ++.|.+...|.||.|.|.+|++
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence 34555 599999999999999999999999999999999999999999999996 5656666779999999999999
Q ss_pred cCCeEEEEeCCC-C--CHHHHHHHHHcCCEEEEEC-CCCCHHHHHHHH-HHHHHhCCCeEeeCCC-----CCCccHHhHH
Q 027019 91 RGYNLIIVMPST-C--SMERRIVLRALGAEIILAD-SALRFEEILEKG-EEILKKTPDGYLLRQF-----ENPANPKIHY 160 (229)
Q Consensus 91 ~g~~~~ivvp~~-~--~~~~~~~l~~~Ga~V~~v~-~~~~~~~~~~~a-~~~~~~~~~~~~~~~~-----~~~~~~~~g~ 160 (229)
+|++|+|||... + +..+..+|+.+||+|+.|. ++.+..|+.+.| +++.....+.+|+... --|.....-+
T Consensus 126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ 205 (396)
T COG0133 126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ 205 (396)
T ss_pred hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence 999999999763 3 4457889999999999997 456788888887 5566666667775442 2233444467
Q ss_pred hhHHHHHHHhh----CCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027019 161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (229)
Q Consensus 161 ~t~a~Ei~~q~----~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~ 211 (229)
+.|+.|..+|+ +.-||+||.++|+|+.+.|++..|.. .+++++||||+.+
T Consensus 206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG 259 (396)
T COG0133 206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAG 259 (396)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCc
Confidence 88999998885 34699999999999999999988865 3679999999975
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.93 E-value=4.6e-25 Score=185.09 Aligned_cols=206 Identities=22% Similarity=0.256 Sum_probs=158.9
Q ss_pred hhHhhhcccCCCcceeccccccCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHH
Q 027019 7 IKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVG 83 (229)
Q Consensus 7 ~~~~~~~~~~~TPL~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~-GN~g~a 83 (229)
+.+.....-.+|||++..+|.+-++ .+||.|.|+..||||||...|......++..| ...++|-++ |.+|.|
T Consensus 68 v~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg-----~~rl~TETGAGQWGsA 142 (432)
T COG1350 68 VREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEG-----AKRLTTETGAGQWGSA 142 (432)
T ss_pred HHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcC-----ceeeecccCCchHHHH
Confidence 3344333336999999999988765 79999999999999999999999999999888 455666665 999999
Q ss_pred HHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCe
Q 027019 84 LAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDG 144 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~~~~----------------~~~~~~~a~~~~~~~~~~ 144 (229)
++.+|+.+|++|+|||-... .+.+..+|+.+||+|+..+.+.+ .-=++..|.+.+.++++.
T Consensus 143 lslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~ 222 (432)
T COG1350 143 LSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENT 222 (432)
T ss_pred HHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCc
Confidence 99999999999999997643 45678889999999999874311 112566677777666555
Q ss_pred EeeCCCCCCccHHhHHhhHHHHHHHhh---CCCCcEEEEccCchhHHHHHHHHHHhc---C-CCcEEEEEeCCCCccccC
Q 027019 145 YLLRQFENPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKEN---N-PDIKVYGVEPSESAVLNG 217 (229)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~a~Ei~~q~---~~~~d~iv~pvG~Gg~~aGi~~~~~~~---~-~~~~vigVep~~~~~~~~ 217 (229)
.|....--.... .|+..++.|..+|+ +..||++|.+||+|+.++|+..-|-.. . ...+.|+|||..||.|.-
T Consensus 223 kY~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~ 301 (432)
T COG1350 223 KYSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTK 301 (432)
T ss_pred eecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCcccc
Confidence 554332111122 48999999996665 567999999999999999998766422 1 228999999999999975
Q ss_pred C
Q 027019 218 G 218 (229)
Q Consensus 218 ~ 218 (229)
+
T Consensus 302 G 302 (432)
T COG1350 302 G 302 (432)
T ss_pred c
Confidence 4
No 83
>PRK09225 threonine synthase; Validated
Probab=99.92 E-value=4e-24 Score=192.29 Aligned_cols=178 Identities=16% Similarity=0.087 Sum_probs=142.9
Q ss_pred CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcC
Q 027019 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYS---MIKDAEDKGLITPGKTTLIEVTSGNTGVGL-AFIAAARG 92 (229)
Q Consensus 17 ~TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~~s~GN~g~al-A~~a~~~g 92 (229)
.|||.+++ .++|+.--..+||||||||++.. ++.++++ ++ ..+|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 25888777778999999999988 7888877 42 5679999999999998 78888999
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHc-CCEEEEECCCCCHHHHHHHHHHHHHhC-----CCeEeeCCCCCCccHHhHHhhHHH
Q 027019 93 YNLIIVMPST-CSMERRIVLRAL-GAEIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETTGP 165 (229)
Q Consensus 93 ~~~~ivvp~~-~~~~~~~~l~~~-Ga~V~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~a~ 165 (229)
++|+|++|++ ++..++.+|..+ |++|..+...++++||.+.++++..+. -+++-.+. -|+..++ |+.+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLL-AQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHH-HHHHHHH
Confidence 9999999985 899999999999 998744333366999999988876541 13444444 3777775 9999999
Q ss_pred HHHHhhCC---CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEe
Q 027019 166 EIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (229)
Q Consensus 166 Ei~~q~~~---~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVe 208 (229)
|+++|+.+ .+|+|+||+|+||.+.|.+.+.+.-.|-.|+|+++
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~ 279 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe
Confidence 99999964 38999999999999999999844333545899987
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.91 E-value=4.5e-23 Score=185.59 Aligned_cols=179 Identities=14% Similarity=0.077 Sum_probs=143.8
Q ss_pred CcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChHHHH-HHHHHHHcCC
Q 027019 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAEDKGLITPGKTTLIEVTSGNTGVG-LAFIAAARGY 93 (229)
Q Consensus 18 TPL~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~~s~GN~g~a-lA~~a~~~g~ 93 (229)
+||.++. .++|++....+||||||||++..+ +.+++++. .+..+|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 7877764 268999999999999999998876 66676541 13667999999999999 4888889999
Q ss_pred eEEEEeCCC-CCHHHHHHHHHcCC---EEEEECCCCCHHHHHHHHHHHHHhC-----CCeEeeCCCCCCccHHhHHhhHH
Q 027019 94 NLIIVMPST-CSMERRIVLRALGA---EIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 94 ~~~ivvp~~-~~~~~~~~l~~~Ga---~V~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
+|+|++|.+ ++..++.+|..+|+ +++.|+ ++|+||.+.++++.++. -+++-.+. -|+..++ ++.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~--G~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVE--GDFDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEc--CCHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHHH
Confidence 999999985 89999999999996 788887 45999999988876441 13344443 3777774 999999
Q ss_pred HHHHHhhCC----CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 027019 165 PEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (229)
Q Consensus 165 ~Ei~~q~~~----~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~ 210 (229)
+|+++|+.+ .+|+|+||+|+||.+.|.+.+.+.-.|-.|+|+++..
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~ 283 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNE 283 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCC
Confidence 999999963 5899999999999999999986643455688886543
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.91 E-value=6e-24 Score=179.84 Aligned_cols=202 Identities=19% Similarity=0.211 Sum_probs=147.6
Q ss_pred chhhHhhh-cccCCCcceeccccccCC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 027019 5 NAIKRDVT-ELIGNTPMVYLNNVVDGC--VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (229)
Q Consensus 5 ~~~~~~~~-~~~~~TPL~~~~~l~~~~--~~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g 81 (229)
++.+..+. -...+|||++.++|.+.+ |.+||+|+|++||+||||...+...+..|.+.|+ +..|.+.+.|.||
T Consensus 109 ~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhG 184 (477)
T KOG1395|consen 109 WEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHG 184 (477)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccc
Confidence 33444444 345679999999998764 5899999999999999999999999998998885 5545566669999
Q ss_pred HHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHH-HHhCCCeEeeCCCC---C-
Q 027019 82 VGLAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKGEEI-LKKTPDGYLLRQFE---N- 152 (229)
Q Consensus 82 ~alA~~a~~~g~~~~ivvp~~---~~~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a~~~-~~~~~~~~~~~~~~---~- 152 (229)
.|+|.+|+++|++|+|+|-.. ....++.+|+.+||+|+.+.. .....++...+.++ .....-.+|+-... +
T Consensus 185 vatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp 264 (477)
T KOG1395|consen 185 VATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHP 264 (477)
T ss_pred hHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCC
Confidence 999999999999999999753 356688899999999999873 22344444443322 22222234433221 1
Q ss_pred -CccHHhHHhhHHHHHHHhh----CCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027019 153 -PANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (229)
Q Consensus 153 -~~~~~~g~~t~a~Ei~~q~----~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~ 211 (229)
|.....-+.+|+-|-..|. +..||.||.++|+|+..+|+..-|.... .++.|+||..+
T Consensus 265 ~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~dk-~v~~igveaag 327 (477)
T KOG1395|consen 265 YPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRDK-SVGMIGVEAAG 327 (477)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhccc-hhheeeeeecc
Confidence 1222233567888776664 4569999999999999999999887533 47888988754
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.87 E-value=2.3e-21 Score=161.72 Aligned_cols=202 Identities=19% Similarity=0.269 Sum_probs=169.0
Q ss_pred hcccCCCcceecccccc--------CCCceEEEEeCCCCC-CCchhhHHHHHHH-HH----HHHcCCCCCCC--------
Q 027019 12 TELIGNTPMVYLNNVVD--------GCVARIAAKLETMEP-CSSVKDRIAYSMI-KD----AEDKGLITPGK-------- 69 (229)
Q Consensus 12 ~~~~~~TPL~~~~~l~~--------~~~~~i~~K~E~~~p-tGS~K~R~a~~~l-~~----a~~~g~~~~g~-------- 69 (229)
+.++..+||+..+.+.+ ....++|+|+|+..| +||+|.|+..|-+ .+ |++.|.+....
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 45777899998865542 244699999999999 8999999887755 33 45566543321
Q ss_pred --------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 027019 70 --------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 70 --------~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
-.|...|+||.|.++..+.+.+|++++|.|..+...+|..+++..|.+|+... .+|..++++-++-++..
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccC
Confidence 15889999999999999999999999999999999999999999999999998 45889999999999988
Q ss_pred CCeEeeCCCCCCccHHhHHhhHHHHHHHhhC--------CCCcEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEeCCCC
Q 027019 142 PDGYLLRQFENPANPKIHYETTGPEIWQDSG--------GKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSES 212 (229)
Q Consensus 142 ~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~--------~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vigVep~~~ 212 (229)
|..||+++-++-... .||...+..|..|++ ..|-.|..|+|.||.-.|++.++|..+ .++.|+-+||..|
T Consensus 231 P~c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths 309 (443)
T COG3048 231 PNCFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (443)
T ss_pred CceEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence 999999876444444 699999999999974 236688899999999999999999766 5699999999999
Q ss_pred cccc
Q 027019 213 AVLN 216 (229)
Q Consensus 213 ~~~~ 216 (229)
|||.
T Consensus 310 PcMl 313 (443)
T COG3048 310 PCML 313 (443)
T ss_pred hHHH
Confidence 9986
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.30 E-value=0.84 Score=35.97 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCeEE-EEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhH
Q 027019 81 GVGLAFIAAARGYNLI-IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (229)
Q Consensus 81 g~alA~~a~~~g~~~~-ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (229)
|..+.++++.+|.++- -+.+.+.-...++.+...+-+|.+++++ .....+.+..+.++.|+.-.+.-+.-+.+.. -
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-h
Confidence 4678899999998873 3333344455666777888999999864 4444555667777777655443322222221 2
Q ss_pred HhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEe
Q 027019 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (229)
Q Consensus 160 ~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVe 208 (229)
...+..+|-+ ..+|.|+++.|+--- --.....+...+..-+++|-
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQ-E~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQ-ERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHH-HHHHHHHHHHCCCCEEEEEC
Confidence 2333333332 368999999998632 22233334433433344443
No 88
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=91.77 E-value=2.3 Score=33.46 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhH
Q 027019 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~-~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (229)
|..+.++++.++.+..--++. +.-...++.+...+.+|.+++.+ .+.....++.+.++.++...+...+-+...+ .
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence 467888999999883333333 22234456666778999999854 3444444556777777755443222222222 1
Q ss_pred HhhHHHHHHHhhC-CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 027019 160 YETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEP 209 (229)
Q Consensus 160 ~~t~a~Ei~~q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep 209 (229)
-.++++++. ..||.|+++.|+-- .=-.....++..+..-+++|-.
T Consensus 88 ----~~~i~~~I~~~~pdiv~vglG~Pk-QE~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 88 ----EEEIIERINASGADILFVGLGAPK-QELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred ----HHHHHHHHHHcCCCEEEEECCCCH-HHHHHHHHHHHCCCCEEEEece
Confidence 112444442 36999999999853 2233334444444444555543
No 89
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=91.33 E-value=1.8 Score=37.21 Aligned_cols=86 Identities=26% Similarity=0.318 Sum_probs=63.2
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCCC-H
Q 027019 33 RIAAKLETMEP-----CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCS-M 105 (229)
Q Consensus 33 ~i~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~-GN~g~alA~~a~~~g~~~~ivvp~~~~-~ 105 (229)
+-++|.++.-| |-+.---.|+-||.+-.+.+ +|.. |+--++ +--|.++--.|+.+|++.+-+|.+... +
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 46777777655 44555557888888887655 3443 554333 667888888999999999999987544 4
Q ss_pred HHHHHHHHcCCEEEEEC
Q 027019 106 ERRIVLRALGAEIILAD 122 (229)
Q Consensus 106 ~~~~~l~~~Ga~V~~v~ 122 (229)
+..++|+.+||+-++.+
T Consensus 200 el~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHcCCceEecH
Confidence 55778899999998876
No 90
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.55 E-value=3.5 Score=35.94 Aligned_cols=57 Identities=28% Similarity=0.487 Sum_probs=44.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
...+++|.+.+|.+.+|.-|......|+.+|..+++.+.. ..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s---~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS---SEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC---HHHHHHHHhcCCCEEEc
Confidence 4567788888999999999999999999999844444332 35666899999977665
No 91
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.40 E-value=2.6 Score=36.71 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=42.1
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 65 ~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+.++.+.+|. +.|..|...+..++.+|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3456665555 56999999999999999986666665556788999999999964
No 92
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.81 E-value=5.9 Score=34.42 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=41.4
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
..+..+.++.+.+|... |..|.+++.+|+.+|.+++++ +.++.+++.++.+|++.+..
T Consensus 159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 33455677777555554 999999999999999974443 23556788888899976543
No 93
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.53 E-value=6.5 Score=33.45 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=44.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
+...+.+|.+.+|...+|..|.++...|+.+|.+++++.. +..+.+.++.+|++-++..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 3455677777677777899999999999999998655533 4467888888998655543
No 94
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.12 E-value=7.5 Score=34.72 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=43.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.++..+.++.+.+| ...|..|.+++..|+.+|.+.+++.. ....+++..+.+|++.+.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETVD 235 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEEe
Confidence 33455677777555 67799999999999999998776442 246788888999998533
No 95
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.91 E-value=2.5 Score=34.39 Aligned_cols=50 Identities=30% Similarity=0.472 Sum_probs=41.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
+|+..+|+.|..++.+....+.++++++... +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 6788889999999999999999999998876 4456777888999988655
No 96
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=88.27 E-value=6.2 Score=31.33 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhH
Q 027019 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~-~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (229)
|..+.++++.+|.+..--++. +.-...++.....|..|.+++.. .......++.+.++.|+.-.+.. +.+...+
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH--
Confidence 356788899998764322332 11233455556788899999854 44444555667777776543321 2222221
Q ss_pred HhhHHHHHHHhhC-CCCcEEEEccCch
Q 027019 160 YETTGPEIWQDSG-GKVDAFISGIGTG 185 (229)
Q Consensus 160 ~~t~a~Ei~~q~~-~~~d~iv~pvG~G 185 (229)
-..++++++. ..+|.++|+.|+=
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCc
Confidence 1123444442 3689999999984
No 97
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.21 E-value=11 Score=31.54 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=38.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
...+|+.++|..|.++|......|.+++++... ..+++.++..+.+++.++-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 456889999999999999988899988777543 3445556566777666664
No 98
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.96 E-value=5.1 Score=33.67 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=41.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.++....++.+.+|. ..|..|.+.+..|+.+|.+.++++ +.++.|++.++.+|++.+.
T Consensus 113 l~~~~~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 113 LEAAGDLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred HHhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 333334466664554 668999999999999999855555 3466788889999997554
No 99
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=87.45 E-value=8 Score=31.78 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=46.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
++.+|+..+|.-|.++|......|.+++++-.........+.++..|.++..+..+ .+.++..+...+..++.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 56689999999999999999999998877654322223344555667776554422 23444444445544443
No 100
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=86.71 E-value=9.6 Score=34.18 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=68.9
Q ss_pred EEeCCC-hHHHHHHHHHHHcCCeEEEEeCC-CCC----HHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHHHhCCCeE
Q 027019 73 IEVTSG-NTGVGLAFIAAARGYNLIIVMPS-TCS----MERRIVLRALGA-EIILADSALRFEEILEKGEEILKKTPDGY 145 (229)
Q Consensus 73 v~~s~G-N~g~alA~~a~~~g~~~~ivvp~-~~~----~~~~~~l~~~Ga-~V~~v~~~~~~~~~~~~a~~~~~~~~~~~ 145 (229)
+..|+| .+...+.|...+.+.+++.|.-+ .-+ ....+....+|| +++.++....|. .+.+...-+- +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HHH
Confidence 445554 45666677777777998888743 222 233445678999 999998532222 1111111111 233
Q ss_pred eeCCC---CCCccHHhHHhhHHHHHHHhhCCCCcEEEE-ccCchhHHHHHHHHHHhcCCCcEEEE
Q 027019 146 LLRQF---ENPANPKIHYETTGPEIWQDSGGKVDAFIS-GIGTGGTVTGAGRFLKENNPDIKVYG 206 (229)
Q Consensus 146 ~~~~~---~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~-pvG~Gg~~aGi~~~~~~~~~~~~vig 206 (229)
|-..| .....+. ......|+.++. ..++|.- ++|.|--..=.-.+++...|+.+|++
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33322 1222332 244555666665 4678886 56888888888888999999999875
No 101
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.00 E-value=11 Score=32.15 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=44.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+.+.+.+|.+.+|...+|..|.+++..|+..|.+++++.. +..+.+.++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4456777777667776799999999999999998665543 356788888899976554
No 102
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.96 E-value=13 Score=31.99 Aligned_cols=56 Identities=21% Similarity=0.244 Sum_probs=43.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~ 120 (229)
...+++|.+.+|.+.+|..|.+++..|+.+|.++++... +..+.+.++. +|++-+.
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 455778888788877899999999999999998655433 3567777877 8986544
No 103
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.72 E-value=11 Score=32.41 Aligned_cols=59 Identities=29% Similarity=0.441 Sum_probs=43.5
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 59 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+.+...+.++.+.+|...+|..|.+++..|+.+|.+++++... . +.+.++.+|++.+..
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVIL 227 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEEe
Confidence 3445567777787777777999999999999999996665432 2 666778899875443
No 104
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.70 E-value=12 Score=30.12 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEEE
Q 027019 49 DRIAYSMIKDAEDK--GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEII 119 (229)
Q Consensus 49 ~R~a~~~l~~a~~~--g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga~V~ 119 (229)
-++..+.+..+.+. +......++++.-+.||.|.++|......|.+++++ .. ...+.+.+. .+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D~--~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-DI--NEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-cC--CHHHHHHHHHHcCCEEE
Confidence 36777777777665 222222234777888999999999999999988744 22 334444443 3476543
No 105
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.69 E-value=24 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=39.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
+++..+.|..|++.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 4889999999999999999999853333 346788999999999976554
No 106
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.52 E-value=12 Score=32.53 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=41.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...+.++.+.+|. ++|-.|.+++..|+.+|.+.++.+.. +..+++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 44556777776666 56899999999999999975555432 45678888889986544
No 107
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=85.40 E-value=12 Score=32.50 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 027019 50 RIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (229)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~ 120 (229)
..|++.|. +-|..+.|.+.+|++.+|-.|.-+.-.|+..|.+++-+... ++|.+.++. +|-+..+
T Consensus 136 ~TAY~gLl---~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg---~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 136 LTAYFGLL---DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG---AEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHHHHHHH---HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC---HHHHHHHHHhcCCceee
Confidence 34555554 45777788998999999999999999999999999988764 478888877 6666544
No 108
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.15 E-value=16 Score=34.88 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=43.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
..++.++.|..|+.+|..-.+.|++++++ +.++.+.+.++.+|.+++.-|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 34999999999999999999999998887 33556788888899998887753
No 109
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=84.80 E-value=2.4 Score=37.30 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=43.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
....+..++|..|.-+|..+..++-.-.|++|.-+.......+...|+++++++.+
T Consensus 40 ~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 40 VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 34588889999999888888444444888889988888999999999999999954
No 110
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.71 E-value=20 Score=30.95 Aligned_cols=75 Identities=25% Similarity=0.263 Sum_probs=55.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCCHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHHHhCCC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-PSTCSMERRIVLRALG-AEIILADSALRFEEILEKGEEILKKTPD 143 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivv-p~~~~~~~~~~l~~~G-a~V~~v~~~~~~~~~~~~a~~~~~~~~~ 143 (229)
|...++|.+++-.|+++|.-.+++|.+.++.= -.....+..++++..| +.-..|+- .++++..+.++++.++.+.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcCC
Confidence 46678999999999999999999998554442 2344556677777777 44456665 3578888999999888854
No 111
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.52 E-value=17 Score=34.54 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=41.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.++.++.|..|+.++..-...|++++++=. ++.+.+.++.+|.+++.-|.+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCC
Confidence 489999999999999999999999877732 356777788888888777643
No 112
>PRK12743 oxidoreductase; Provisional
Probab=84.42 E-value=10 Score=31.12 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=47.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
.+.+|+.++|..|.++|......|.+++++...+.. ....+.++.+|.++..+..+ .+.++..+...++.++
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999988777544322 22345667788777665432 2334444444555444
No 113
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.23 E-value=18 Score=33.91 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=41.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.+++..+.|+.|+.+|..-+..|.+++++=. ++++.+.++.+|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 3589999999999999999999999877743 346777778889888887754
No 114
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.21 E-value=10 Score=25.36 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=37.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-----H----HHHHHHHHcCCEEEE
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-----M----ERRIVLRALGAEIIL 120 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-----~----~~~~~l~~~Ga~V~~ 120 (229)
++..++|..|.-+|.+.+.+|.+++++.+.+.. + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 778889999999999999999999999876432 1 234566677777665
No 115
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.98 E-value=21 Score=30.81 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=43.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+...+.++.+.+| ...|..|.+++..|+.+|...++.+.. ...+.+.++.+|++.+..
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~ 225 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLN 225 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEec
Confidence 4556677776555 667999999999999999887666554 356777888899876543
No 116
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.94 E-value=20 Score=30.94 Aligned_cols=59 Identities=32% Similarity=0.380 Sum_probs=41.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
.....+.++.+.+|.+ +|..|.+++..|+.+|.+.++++. .+..+.+.++.+|++.+..
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 3445566777756664 689999999999999995555543 3556777777889876554
No 117
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=83.92 E-value=8.5 Score=33.27 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=44.1
Q ss_pred cCCCCCCCeEEEEeCC---ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 62 KGLITPGKTTLIEVTS---GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~---GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
.|.++ |.+ |+..+. +|.++++..+++++|++++++.|+.. +...++.++..|+++...+
T Consensus 145 ~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 45433 333 555555 69999999999999999999999864 5555667777888887765
No 118
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=83.91 E-value=36 Score=31.45 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHHHHcCCeEEEEe-----------CCCCCHHHHHHHHHcCCEEEEECCC---CCH-HHHHHHHHHHHHhCCCeE---
Q 027019 84 LAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSA---LRF-EEILEKGEEILKKTPDGY--- 145 (229)
Q Consensus 84 lA~~a~~~g~~~~ivv-----------p~~~~~~~~~~l~~~Ga~V~~v~~~---~~~-~~~~~~a~~~~~~~~~~~--- 145 (229)
+..+|+.+|+++++.. |.-............|++.+....+ +.| .++++...++.++....+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4567889999988765 2333455666777789999888643 223 355555444443221111
Q ss_pred --eeCCCC-CC--ccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027019 146 --LLRQFE-NP--ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (229)
Q Consensus 146 --~~~~~~-~~--~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~ 211 (229)
|-.+.. .. ..........+.++.+.+ +.+.||+.+-||.++.-+++ ..|.+.|+++-|..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNE 406 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCH
Confidence 111100 00 011123344455666665 57899999999998766554 36888999998865
No 119
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.85 E-value=11 Score=28.46 Aligned_cols=69 Identities=32% Similarity=0.326 Sum_probs=45.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC----HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHH
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILADSAL-RFEEILEKGEEIL 138 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~----~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~ 138 (229)
+.+|+.+++..|+++|....+.|-..++++..+.+ ......++..|.++..+..+. +.++..+..++..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 45888999999999999988887777666665522 223455677889887776432 2333444444444
No 120
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=83.70 E-value=9.7 Score=31.68 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCH-H--HHHHHHHHHHHhCCCeEeeCCC----CCCccH
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF-E--EILEKGEEILKKTPDGYLLRQF----ENPANP 156 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~-~--~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 156 (229)
++.+-++.|-|++++ .-+.-..+++.+ +|.+-..|=.--+. . -.+.+|.---+..++.++++-. .+...+
T Consensus 23 ig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdalt~ 99 (272)
T COG2894 23 IGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDALTP 99 (272)
T ss_pred HHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccCCH
Confidence 333344567776655 556666677765 66654433210000 0 1122221111223344443322 233445
Q ss_pred HhHHhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhc--CCCcEEEEEeCCCCc
Q 027019 157 KIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKEN--NPDIKVYGVEPSESA 213 (229)
Q Consensus 157 ~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~--~~~~~vigVep~~~~ 213 (229)
+ +...+..|+.+ ..+|||+| -.-|||-.+|+.. ..+-.||.+-|+-|.
T Consensus 100 E-~v~~vv~eL~~---~~fDyIi~-----DsPAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 100 E-GVKKVVNELKA---MDFDYIII-----DSPAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred H-HHHHHHHHHHh---cCCCEEEe-----cCcchHHHHHHhhhhccceEEEEcCCCccc
Confidence 4 66666666554 47999998 4567788887753 345678888888764
No 121
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.55 E-value=16 Score=31.95 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=41.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+...++++.+.+|. .+|..|.+++..|+.+|.+.++++. .++.+++.++.+|++.+..
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeC
Confidence 44556777776665 4689999999999999996444443 3557888888999975543
No 122
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=83.52 E-value=21 Score=30.65 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=40.2
Q ss_pred cCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHH-cCCEEEEEC
Q 027019 62 KGLITPG--KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (229)
Q Consensus 62 ~g~~~~g--~~~vv~~s~GN~g~alA~~a~~~g~-~~~ivvp~~~~~~~~~~l~~-~Ga~V~~v~ 122 (229)
.+.+.++ .+.+|...+|..|.++...|+.+|. +++++.+ +..+.+.++. +|++-++..
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 3445554 5656777779999999999999998 5555533 3466676665 898765544
No 123
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=83.51 E-value=28 Score=31.33 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=39.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCC-CCCCeEEEEeCCChHHHH--HHHHHHHcCCeEEEEe
Q 027019 40 TMEPCSSVKDRIAYSMIKDAEDKGLI-TPGKTTLIEVTSGNTGVG--LAFIAAARGYNLIIVM 99 (229)
Q Consensus 40 ~~~ptGS~K~R~a~~~l~~a~~~g~~-~~g~~~vv~~s~GN~g~a--lA~~a~~~g~~~~ivv 99 (229)
+.+|.|..+ .....+...+.++.+ ..++..+|+..++..|+| +|.+. ..|..++++.
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 456777643 455666777777776 334667888888888888 56666 7888877765
No 124
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.39 E-value=16 Score=28.69 Aligned_cols=114 Identities=20% Similarity=0.149 Sum_probs=71.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (229)
+|-.-+.|+-|+++|..++.+|++++.+-|...+.. .....+.+ .. +.++..+ +. +...+.--
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~--~~----~l~ell~-------~a-Div~~~~p 100 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVE--YV----SLDELLA-------QA-DIVSLHLP 100 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEE--ES----SHHHHHH-------H--SEEEE-SS
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccce--ee----ehhhhcc-------hh-hhhhhhhc
Confidence 488889999999999999999999999977753332 23334432 21 2443332 22 44444322
Q ss_pred CCCccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHH--HHHHHHHHhcCCCcEEEEEeC
Q 027019 151 ENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKENNPDIKVYGVEP 209 (229)
Q Consensus 151 ~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~~~~~~~vigVep 209 (229)
.++.+ ...+..|.++++ +.+.+++-++-|..+ ..+..++++ ..+.-.+.+.
T Consensus 101 lt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 101 LTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp SSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred ccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 23222 346778888888 468899999999886 557777765 2344444443
No 125
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=83.28 E-value=7.8 Score=33.51 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+..++++.+.+|.. .|..|.+++..|+.+|.+++++.. ++.|++.++.+||+.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445677777756655 588899989999999987544433 35678889999997654
No 126
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.88 E-value=12 Score=27.15 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
|......|+.+|.+++++.+ ++.|++.++.+||+.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhccccccccc
Confidence 55666667777744444443 44677777777776665553
No 127
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.80 E-value=16 Score=31.62 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=41.4
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
..+....++.+.+|. ++|..|.+....|+.+|.+.++++.. ++.+++.++.+||+.+..
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLVN 220 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 333334466665555 56999999999999999865555433 457888889999986543
No 128
>PRK07109 short chain dehydrogenase; Provisional
Probab=82.79 E-value=9.5 Score=33.14 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=46.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
...+|+..+|..|+++|....+.|.+++++..... .....+.++..|+++..+..+- +.++..+.+.+..++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56688999999999999999999998877765421 1223455667788876655332 233333333444443
No 129
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=82.77 E-value=3.4 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL 114 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~ 114 (229)
|...++||+|.|+|......|.+++++.++. ...+.++..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~ 41 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINET 41 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHh
Confidence 6778999999999999999999999998764 455555543
No 130
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.76 E-value=13 Score=30.36 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=40.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+.++|..|.+++....+.|.+++++..... .....+.++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 56799999999999999999999998777655432 22334556667888766553
No 131
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.55 E-value=18 Score=30.62 Aligned_cols=57 Identities=32% Similarity=0.402 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...+.++.+.+|...+|..|.+++..|+.+|.+.++++... .+.+.++.+|++-+.
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~~~ 189 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIGPVV 189 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCCEEE
Confidence 344567777766666779999999999999999877765443 345555557775443
No 132
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.54 E-value=22 Score=30.98 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=42.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILA 121 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga~V~~v 121 (229)
.+.+.+|.+.+|.+.+|..|.++...|+.+|.+++++. .+..+.+.++ .+|++-+..
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 45567787767777779999999999999999855443 2456777776 799876554
No 133
>PRK08628 short chain dehydrogenase; Provisional
Probab=82.20 E-value=15 Score=30.08 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=39.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|-.|.++|..-.+.|.+++++..........+.++..|.++..+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 5668899899999999999999999988876543333334556666777655553
No 134
>PRK08589 short chain dehydrogenase; Validated
Probab=82.16 E-value=11 Score=31.37 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=45.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
++.+|+..++--|+++|......|.+++++-.........+.++..+.++..+..+ .+.++..+...+..++.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 56789999999999999998889998888765421222345556667666554432 22333444444444443
No 135
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.14 E-value=9.1 Score=33.30 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=38.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+..+|-.|+++|......|.+++++...... ....+.++..|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 566889999999999999999999997776543211 223445667888876554
No 136
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.14 E-value=15 Score=30.22 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=45.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
+..+|+..++.-|+++|....+.|.+++++-... .....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 6679999999999999999999999988764432 233345556677777555432 2333343334444343
No 137
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.68 E-value=15 Score=30.08 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=45.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~~ 141 (229)
.+.+|+..+|..|.++|......|.+++++..........+.+...+.++..+..+- +.++..+...+..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999998999998887665222223344555676665444322 2333334444444433
No 138
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.58 E-value=17 Score=29.75 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=45.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
++.+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+..+ .+.++..+...+..++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 566889989999999999988999987776543211 12234556667777655432 23444444445554443
No 139
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=81.53 E-value=25 Score=29.93 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
+...++||.+.+|-+..|--|..+...|+..|--++.... ..+|.+..+..|++
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 4466788999889999999999999999998876666544 45788888999998
No 140
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.33 E-value=26 Score=28.24 Aligned_cols=33 Identities=33% Similarity=0.311 Sum_probs=27.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|..|.+++......|.+++++...
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 566899999999999999988889887666543
No 141
>PRK14030 glutamate dehydrogenase; Provisional
Probab=81.04 E-value=13 Score=34.00 Aligned_cols=59 Identities=20% Similarity=0.122 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEE--------eCCCCCHHH
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIV--------MPSTCSMER 107 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~iv--------vp~~~~~~~ 107 (229)
-|+..+.+..+.+.........+|+.-+.||-|..+|.....+|.+++.+ -|+..+..+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 46777777777654444444456888889999999999999999999994 455566555
No 142
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.04 E-value=20 Score=31.46 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=52.9
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 57 KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 57 ~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+|-.++.+++|.+ ++..+.|.-|+..-.+|+.+|-+=++++. ..+.+++..+.+||+++.-..
T Consensus 159 ~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 159 VHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 45667788888876 88888999999999999999998888854 466888888999999977553
No 143
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.93 E-value=8 Score=28.12 Aligned_cols=82 Identities=27% Similarity=0.321 Sum_probs=45.4
Q ss_pred HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCC-CCcEEEEccCchh
Q 027019 108 RIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVDAFISGIGTGG 186 (229)
Q Consensus 108 ~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~-~~d~iv~pvG~Gg 186 (229)
++.++.+|++|+.++.+ ++. .+++++.+-..+++.. +.. ...+|.+..++ .+|.+|-++|++.
T Consensus 7 ~q~ak~~G~~vi~~~~~---~~k----~~~~~~~Ga~~~~~~~-~~~--------~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS---EEK----LELAKELGADHVIDYS-DDD--------FVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHTTSEEEEEESS---HHH----HHHHHHTTESEEEETT-TSS--------HHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHcCCEEEEEECC---HHH----HHHHHhhccccccccc-ccc--------cccccccccccccceEEEEecCcHH
Confidence 46678899999998854 222 3344454323333322 111 34444444433 6999999999877
Q ss_pred HHHHHHHHHHhcCCCcEEEEEe
Q 027019 187 TVTGAGRFLKENNPDIKVYGVE 208 (229)
Q Consensus 187 ~~aGi~~~~~~~~~~~~vigVe 208 (229)
++.-.. +...+.=+++.+-
T Consensus 71 ~~~~~~---~~l~~~G~~v~vg 89 (130)
T PF00107_consen 71 TLQEAI---KLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHH---HHEEEEEEEEEES
T ss_pred HHHHHH---HHhccCCEEEEEE
Confidence 664444 3333333444443
No 144
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.75 E-value=23 Score=30.31 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 64 ~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+.++...+|...++..|.+++..|+.+|++++++... ..+.+.++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 46667776777777889999999999999987666443 3566666778875443
No 145
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.61 E-value=31 Score=29.53 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=40.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
...+.++...+| .++|..|.+++..|+..|.+.++.+... ..+.+.++.+|++-+.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 445566667566 5589999999999999999866665543 4567777888985444
No 146
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.50 E-value=25 Score=30.33 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=42.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+...+.++.+.+|. +.|..|.+++..|+.+|.+.++.+.. +..+++.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 344556677776666 57999999999999999986555433 45677778889986544
No 147
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=80.36 E-value=24 Score=30.19 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=39.0
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 64 ~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+.++.+.+|.. +|..|.+++..|+.+|.+++++.+ ...+++.++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456666656655 899999999999999998555533 34577777889986544
No 148
>PRK08303 short chain dehydrogenase; Provisional
Probab=80.31 E-value=22 Score=30.39 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=46.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----------CHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHH
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-----------SMERRIVLRALGAEIILADSA-LRFEEILEKGEE 136 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-----------~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~ 136 (229)
+..+|+..++--|+++|....+.|.+++++..... .....+.++..|.+++.+..+ .+.++..+...+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 56688998899999999999999998777654321 112334556677766554432 234444445555
Q ss_pred HHHhC
Q 027019 137 ILKKT 141 (229)
Q Consensus 137 ~~~~~ 141 (229)
..++.
T Consensus 89 ~~~~~ 93 (305)
T PRK08303 89 IDREQ 93 (305)
T ss_pred HHHHc
Confidence 54443
No 149
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=80.28 E-value=16 Score=30.33 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=39.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|++++....+.|.+++++..... .....+.++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56688899999999999999999998777755421 12234455566777766553
No 150
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.22 E-value=15 Score=32.42 Aligned_cols=61 Identities=30% Similarity=0.342 Sum_probs=46.3
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 59 a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
++.+..+.||.. |....-|-.|.....+|+.+|.+++.+- .+..|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEcC
Confidence 455566788876 6666667778777888898997777773 355789999999999888753
No 151
>PRK08226 short chain dehydrogenase; Provisional
Probab=80.21 E-value=16 Score=30.01 Aligned_cols=54 Identities=28% Similarity=0.179 Sum_probs=37.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+.++|..|.++|......|.+++++-.........+.+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 566899999999999999999999987766443321223344444566665544
No 152
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=79.44 E-value=42 Score=29.25 Aligned_cols=146 Identities=14% Similarity=0.184 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCC-----------CHHH---H--HHH-HHc-
Q 027019 54 SMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTC-----------SMER---R--IVL-RAL- 114 (229)
Q Consensus 54 ~~l~~a~~~g~~~~g~~~vv~~s~-GN~g~alA~~a~~~g~~~~ivvp~~~-----------~~~~---~--~~l-~~~- 114 (229)
..+..+++++ ...|+.... .+.-......+...|+|++.+-.... .... . +.+ +.+
T Consensus 71 ~~i~~li~~~-----vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~ 145 (336)
T PRK15408 71 QLINNFVNQG-----YNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVG 145 (336)
T ss_pred HHHHHHHHcC-----CCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 4566666666 344555433 33334444557778998888743210 0111 1 112 223
Q ss_pred --CCEEEEECCCCCH---HHHHHHHH-HHHHhCCCeEeeCC-CCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhH
Q 027019 115 --GAEIILADSALRF---EEILEKGE-EILKKTPDGYLLRQ-FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGT 187 (229)
Q Consensus 115 --Ga~V~~v~~~~~~---~~~~~~a~-~~~~~~~~~~~~~~-~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~ 187 (229)
+.+|..+.+.... .+..+-.. .+.++.++.-.+.. +.+. ....++ ....++++.- +++|.||++ +...
T Consensus 146 ~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~-d~~~a~-~~~~~lL~~~-pdi~aI~~~--~~~~ 220 (336)
T PRK15408 146 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYN-DATKSL-QTAEGILKAY-PDLDAIIAP--DANA 220 (336)
T ss_pred CCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCC-cHHHHH-HHHHHHHHHC-CCCcEEEEC--CCcc
Confidence 3577655432211 11111111 22234455444432 2222 222233 2555566553 689999987 3334
Q ss_pred HHHHHHHHHhcCC-CcEEEEEeC
Q 027019 188 VTGAGRFLKENNP-DIKVYGVEP 209 (229)
Q Consensus 188 ~aGi~~~~~~~~~-~~~vigVep 209 (229)
+.|+..++++.+. +++|+|+.-
T Consensus 221 ~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 221 LPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC
Confidence 5578888887653 688888863
No 153
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.37 E-value=22 Score=28.82 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=45.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
.+.+|+..+|.-|.++|......|..++++.... .....+.++..+.++..+..+- +.++.....++..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5668888899999999999999999877765432 2334455566776665554332 233333333444433
No 154
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=79.11 E-value=28 Score=28.50 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=45.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
+..+|+..+|.-|.++|....+.|.+++++-. .......+.++..+.++..+..+- +.++..+...+..++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999998776532 223444556666676766554332 233333333444333
No 155
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=78.97 E-value=22 Score=30.07 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=36.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.+.+|...+|..|.+++..|+.+|.++++.... ..+.+.++.+|++-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKEVI 196 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCEEE
Confidence 4455666666999999999999999986555333 3567777788885443
No 156
>PRK06114 short chain dehydrogenase; Provisional
Probab=78.92 E-value=29 Score=28.42 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=38.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 122 (229)
...+|+.++|--|.++|......|.++++....... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 567899999999999999999999988877654321 233455666676665554
No 157
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=78.84 E-value=39 Score=28.62 Aligned_cols=56 Identities=23% Similarity=0.228 Sum_probs=40.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+.+.++.+.+|....|..|.+++..|+.+|++++.+.+ ...+...++.+|++-+.
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 455677777666667899999999999999999766543 34566666778875443
No 158
>PRK06182 short chain dehydrogenase; Validated
Probab=78.75 E-value=36 Score=28.15 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=45.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
.+.+|+.++|..|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+...++.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 456889999999999999998899988877543 34455555567777777643 333333334444433
No 159
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.57 E-value=11 Score=33.03 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=44.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+..+.||+..-|..-+| .|.---.+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 175 k~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 334466888755555555 8877778899999999999443 44677888999999877653
No 160
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=78.57 E-value=19 Score=28.92 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=31.2
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCC-EEEEECC
Q 027019 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-CSMERRIVLRALGA-EIILADS 123 (229)
Q Consensus 66 ~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga-~V~~v~~ 123 (229)
+++. .+++.++|.-+.++-++......+++.+=.+. .-....+.++.||. ++..+.+
T Consensus 33 ~~g~-~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g 91 (187)
T COG2242 33 RPGD-RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91 (187)
T ss_pred CCCC-EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec
Confidence 4454 48888888888887777444455555553321 12222334455664 3445543
No 161
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.54 E-value=18 Score=29.78 Aligned_cols=72 Identities=19% Similarity=0.082 Sum_probs=44.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
.+.+|+.++|..|.+++......|.+++++-..... ......++..|.++..+..+- +.++..+...+..++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 567999999999999999999999987766332211 122344556677776555332 333334444444333
No 162
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=78.51 E-value=19 Score=31.94 Aligned_cols=56 Identities=32% Similarity=0.404 Sum_probs=42.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
..+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456667766777779999999999999999876553 2446778888899876653
No 163
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=78.51 E-value=24 Score=27.49 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC---------CCCHHHHHHHHH
Q 027019 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS---------TCSMERRIVLRA 113 (229)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~---------~~~~~~~~~l~~ 113 (229)
|.--+-++.....+.+|.+.|- ...+|.+|+|-+++-++-+... ++++++|.-. ..+.+..+.|+.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445668888888999988873 4445555568888876665443 4888887632 235677888999
Q ss_pred cCCEEEEEC
Q 027019 114 LGAEIILAD 122 (229)
Q Consensus 114 ~Ga~V~~v~ 122 (229)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999987654
No 164
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.50 E-value=28 Score=29.32 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=46.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC----------CCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHH
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST----------CSMERRIVLRALGAEIILADSA-LRFEEILEKGEE 136 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~----------~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~ 136 (229)
+++.+|+..++.-|+++|....+.|.+++++.... ......+.++..|.++..+..+ .+.++..+...+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 35679999999999999999999999877764322 1112244555667776655432 234444445555
Q ss_pred HHHhC
Q 027019 137 ILKKT 141 (229)
Q Consensus 137 ~~~~~ 141 (229)
..++.
T Consensus 86 ~~~~~ 90 (286)
T PRK07791 86 AVETF 90 (286)
T ss_pred HHHhc
Confidence 55544
No 165
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=78.47 E-value=35 Score=27.90 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHH
Q 027019 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEIL 131 (229)
Q Consensus 52 a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~ 131 (229)
+.-+.....+-|. ...=|+.++--...++...++.+. ++.|=...-.+.+..++....||+.++.++- -.+..
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~--~~ev~ 99 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL--NPEVA 99 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC--CHHHH
Confidence 3444444445442 222466667777788888888888 5555545556788899999999999988853 23333
Q ss_pred HHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHH--------------HhhC-CCCcEEEEccCchhHHHHHHHHHH
Q 027019 132 EKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW--------------QDSG-GKVDAFISGIGTGGTVTGAGRFLK 196 (229)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~--------------~q~~-~~~d~iv~pvG~Gg~~aGi~~~~~ 196 (229)
+.| .++ +..+++...+|.-....+ ..|.+++ .-+. +-++.-|+|+|+=+. .=+..+++
T Consensus 100 ~~a----~~~-~ip~~PG~~TptEi~~Al-e~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~-~N~~~yla 172 (211)
T COG0800 100 KAA----NRY-GIPYIPGVATPTEIMAAL-ELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSL-DNAADYLA 172 (211)
T ss_pred HHH----HhC-CCcccCCCCCHHHHHHHH-HcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCH-HHHHHHHh
Confidence 333 333 667776666665443221 2223222 2221 236788888887443 34444443
No 166
>PRK12828 short chain dehydrogenase; Provisional
Probab=78.44 E-value=31 Score=27.52 Aligned_cols=55 Identities=22% Similarity=0.074 Sum_probs=40.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+.++|-.|.+++....+.|.+++++...... ......+...+.+++.++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 567899999999999999888889997777654322 2334455666778777764
No 167
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=78.32 E-value=11 Score=30.59 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh
Q 027019 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 76 s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
+++..|+++|....+.|.++++.-..... ....+..+.+|.+++.++-. +.++..+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45778999999888889888887655322 12234445678887776643 333444444444444
No 168
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.31 E-value=46 Score=29.16 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=43.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEECC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILADS 123 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~v~~ 123 (229)
+++....|.-|+..+..++.+|...++++ +.++.+++..+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 59999999999999999999999999998 446788888877 7788777654
No 169
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=77.87 E-value=19 Score=29.37 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
++.+|+.++|..|.++|......|.+++++...... ......++..|.++..+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEc
Confidence 567899999999999999999899987665433211 1223445556777766543
No 170
>PLN02740 Alcohol dehydrogenase-like
Probab=77.69 E-value=33 Score=30.24 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...+.+|.+.+|. +.|..|.+++..|+.+|.+.++.+. .+..+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 34557777775555 5799999999999999985444432 245688888899997544
No 171
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.53 E-value=20 Score=31.35 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=41.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.+.+.++.+.+|. ++|..|.+++..++.+|...++++.. ...+++.++.+|++-++
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 44567777776666 57999999999999999954444432 45678888889986443
No 172
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=77.48 E-value=22 Score=30.58 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=38.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 66 ~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.++.+.+|.+ .|..|.++...|+.+|.+.++++ +.+..+.+.++.+|++.+.
T Consensus 162 ~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLITG-AGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 3566656654 68999999999999999655555 3456778888889987554
No 173
>PRK12937 short chain dehydrogenase; Provisional
Probab=77.46 E-value=28 Score=28.03 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=40.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA 124 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.+.+|+..+|..|.++|....+.|.+++++...... ....+.++..+.++..+..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 566889999999999999999999988776544321 22344556678887776543
No 174
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=77.29 E-value=31 Score=29.37 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=37.1
Q ss_pred CeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIE-VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~-~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.++. ..+|..|.++...|+.+|.+++++.+ +..+.+.++.+|++.+...
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 343554 67789999999999999998555433 3567888888999766544
No 175
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.23 E-value=23 Score=31.02 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=41.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...++++.+.+|. .+|..|.+.+..|+.+|.+.++.+ +.+..+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 44556777776666 569999999999999999544443 2245688888889996544
No 176
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.19 E-value=21 Score=29.09 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
++.+|+..+|..|.++|....+.|.+++++...... ....+.++..+.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 566899999999999999999999987777544222 2234455667777655543
No 177
>PRK08643 acetoin reductase; Validated
Probab=77.02 E-value=24 Score=28.74 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~ 123 (229)
++.+|+.++|..|.+++....+.|.+++++....... .....++..+.++..+..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4568899999999999999999999877765432221 223345556777766554
No 178
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.97 E-value=21 Score=29.83 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=44.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
++.+|+.++|.-|+++|....+.|.+++++...... ....+.++..|.++..+..+- +.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999987665433211 122344556677776554332 233333344444443
No 179
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.61 E-value=32 Score=27.85 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=39.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|++++......|.+++++...... ....+.++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 567899999999999999999999988765433222 2234456667888766654
No 180
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.58 E-value=41 Score=28.81 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=41.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
.++..+.++.+.+|. ..|..|.+++..|+.+|.+-++++. .+..+++.++.+|++.+..
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 344446677776666 5689999999999999999333332 2456777888899865543
No 181
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=76.55 E-value=17 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC--CCH--HHH----HHHHHcCCEEEEEC
Q 027019 78 GNTGVGLAFIAAARGYNLIIVMPST--CSM--ERR----IVLRALGAEIILAD 122 (229)
Q Consensus 78 GN~g~alA~~a~~~g~~~~ivvp~~--~~~--~~~----~~l~~~Ga~V~~v~ 122 (229)
+|.++|++..+.++|+.++++.|+. .+. ..+ +..+..|.++..++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999987 444 233 33455689988885
No 182
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=76.51 E-value=19 Score=31.47 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...++++.+.+|. ++|..|.+++..|+.+|.+.++.+.. +..+++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 34556777776666 56999999999999999954444422 34677788889997554
No 183
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=76.45 E-value=45 Score=28.10 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=41.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+.+.++.+.+|...+|..|.+++..|+..|.+.+++.. +..+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 45667777677777899999999999999998766433 345666677788864443
No 184
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.36 E-value=22 Score=28.87 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=45.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
+..+|+..++.-|+++|....+.|.+++++-..... ....+.++..|.+++.+..+ .+.++..+...+..++.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 566888888999999999999999997776443211 12234456667776554322 23444444445554443
No 185
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.31 E-value=25 Score=28.58 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|..|.+++....+.|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 556899999999999999999999987777543211 222344455666665544
No 186
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=76.26 E-value=17 Score=28.42 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=43.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-----CSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~-----~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
-+|+...|..|..+|..-...+-.-++++... .....++.++..|++|.....+- +.++..+...++.++
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 47888889999999988777766555555443 22357888899999998876542 333333333344333
No 187
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.24 E-value=26 Score=28.25 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+.++|..|.+++......|.+++++...... ......++..+.+++.+..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 456889999999999999988899987776654221 1223445566777766554
No 188
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.22 E-value=40 Score=29.07 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=41.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+...+.++.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..+.+..+.+|++.+.
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v 216 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIV 216 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEe
Confidence 344556777775666 57899999999999999975555443 34667777888886443
No 189
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.22 E-value=30 Score=27.69 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+.++|..|.+++....+.|.+++++...... ......++..+.++..+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 456889999999999999988889987666654322 1223445556777777654
No 190
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.16 E-value=23 Score=28.40 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=29.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~ 102 (229)
.+.+|+.++|..|.+++..+.+.|.+++++....
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5668999999999999999999999988876643
No 191
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.11 E-value=25 Score=28.38 Aligned_cols=72 Identities=25% Similarity=0.239 Sum_probs=43.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
.+.+|+.++|..|.+++....+.|.+++++...... ....+.++..+.++..+..+- +.++..+...+..++
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456888888999999999999999987777643211 122333455566665554332 333333344444443
No 192
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.07 E-value=25 Score=28.34 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 123 (229)
...+|+.++|..|.++|....+.|.+++++..... .....+.++..+.++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56688888999999999999999998766633211 11233445556766655543
No 193
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.05 E-value=25 Score=29.93 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEECCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
...+|+.++|..|+++|....+.|.++++.-.... .....+.++..|.++..+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 56789999999999999998889998776643221 123345566778888766543
No 194
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=75.72 E-value=26 Score=28.40 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=39.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA 124 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.+.+|+..+|--|.++|......|..+++....... ......++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 566899999999999999988899887765433211 12234556678888766643
No 195
>PRK05866 short chain dehydrogenase; Provisional
Probab=75.48 E-value=23 Score=30.03 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|..|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~ 95 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVP 95 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 456889999999999999998899988777654211 122334444566655544
No 196
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.42 E-value=25 Score=29.76 Aligned_cols=57 Identities=28% Similarity=0.408 Sum_probs=41.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+.+.+.++.+.+|. +.|..|.+++..|+.+|.+++++. .+..+.+.++.+|+....
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVG---RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCcEEe
Confidence 345667777776666 478999999999999999954442 235677777778886543
No 197
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.36 E-value=25 Score=28.64 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+.++|.-|+++|......|.+++++...... ......++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 567999999999999999999999987776543211 122334444566665554
No 198
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=75.30 E-value=45 Score=29.41 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=43.3
Q ss_pred CCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 43 PCSSVKDRIAYSMIKDAEDKGL---ITPGKTTLIEVTSGNTGVGLAFIAA-ARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~---~~~g~~~vv~~s~GN~g~alA~~a~-~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+.|.-..|.+..-.... ..|. +.+. ..|+..+++..+..++..+- .-|=...|++|.-.-..-....+..|+++
T Consensus 63 ~~G~~~lr~aia~~~~~-~~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLER-RFDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHH-hhCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 46766666554332211 1121 2332 23666677777776655443 23433457777643333345577899999
Q ss_pred EEECC
Q 027019 119 ILADS 123 (229)
Q Consensus 119 ~~v~~ 123 (229)
+.++-
T Consensus 141 ~~v~~ 145 (393)
T TIGR03538 141 YFLNC 145 (393)
T ss_pred EEeec
Confidence 98874
No 199
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=75.30 E-value=26 Score=28.38 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=38.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 122 (229)
+..+|+.++|..|+++|....+.|.+++++...... ....+.++..|.++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 556899999999999999999999887775543221 223455566788776544
No 200
>PRK06194 hypothetical protein; Provisional
Probab=75.15 E-value=30 Score=28.85 Aligned_cols=56 Identities=27% Similarity=0.304 Sum_probs=38.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA 124 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.+.+|+.++|.-|.++|....+.|.+++++-..... ......+...|.++..+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 456899999999999999988899987766433211 22334445557777666543
No 201
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.03 E-value=26 Score=28.56 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=43.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
+..+|+.++|.-|.++|....+.|.+++++...... ....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 566899999999999999999999987666433211 12234455567676555432 2233333333444333
No 202
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=74.99 E-value=30 Score=29.24 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 67 ~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
++.+.+|...+|..|.+++..|+.+|.+++++.. +..+.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 3456566666799999999999999998666643 34677777889985544
No 203
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.99 E-value=48 Score=27.65 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=40.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+.++.+.+|...+|..|.++...|+..|.+++.+... ..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 345566776777777999999999999999996555443 3566667778885554
No 204
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=74.84 E-value=26 Score=32.16 Aligned_cols=53 Identities=13% Similarity=-0.047 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
-+++.+.+..+++.........+++..+.||-|..+|.....+|.+++.+...
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 45777777777654433333345888999999999999999999998866543
No 205
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.78 E-value=25 Score=28.81 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=37.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|.+++......|.+++++...... ....+.++..+.++..+..
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPT 57 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 345888999999999999988999987777654211 1223445556777665543
No 206
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=74.74 E-value=29 Score=30.31 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+...+.++.+.+|. ++|..|.+++..|+.+|...++++.. ...+++.++.+|++.+..
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc
Confidence 33456777775665 56999999999999999854444432 346788889999975543
No 207
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=74.72 E-value=28 Score=32.22 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 46 SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 46 S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~-GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
++++..+...+..|.+.+ .+.||++|. |.+++.++.+ +...+.+++.+......+ ..-.+|..-+.++..
T Consensus 358 ~~~~aia~sAv~~A~~l~-----akaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~~~~r~--l~l~~GV~p~~~~~~ 428 (480)
T cd00288 358 STTEAVAMSAVRAAFELG-----AKAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNEQTARQ--LHLYRGVYPVLFEEP 428 (480)
T ss_pred ChHHHHHHHHHHHHHhcC-----CCEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCHHHhhh--eeeccCcEEEEeccc
Confidence 345556666666665554 334555544 7777766554 445777777665322111 122357666665532
Q ss_pred -----CCHHHHHHHHHHHHHh
Q 027019 125 -----LRFEEILEKGEEILKK 140 (229)
Q Consensus 125 -----~~~~~~~~~a~~~~~~ 140 (229)
.+.++....+.+.+++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 429 KPGWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccccCCCHHHHHHHHHHHHHH
Confidence 2334444444444433
No 208
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=74.39 E-value=26 Score=29.97 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=38.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
..+.++...+|. ++|..|.+++.+|+.+|+..++++ .....+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566676666 578999999999999998444444 33456777778899864
No 209
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=73.97 E-value=17 Score=26.10 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHh
Q 027019 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS--ALRFEEILEKGEEILKKTPDGYLLRQFENPANPKI 158 (229)
Q Consensus 81 g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (229)
...+|.+.++.|+++.++=.......-.+.++.+..+++.+.. ..++....+.++...+..++...+- +
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~---------G 87 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV---------G 87 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE---------E
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE---------E
Confidence 3455666777899888773333335556778888888888864 2345566666666554445544331 2
Q ss_pred H-HhhHHHH-HHHhhCCCCcEEEEccCc
Q 027019 159 H-YETTGPE-IWQDSGGKVDAFISGIGT 184 (229)
Q Consensus 159 g-~~t~a~E-i~~q~~~~~d~iv~pvG~ 184 (229)
| +.+..+| +++.. ..+|++|..=|-
T Consensus 88 G~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 88 GPHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp ESSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CCchhcChHHHhccC-cCcceecCCChH
Confidence 3 2344444 34432 367888876553
No 210
>PRK08278 short chain dehydrogenase; Provisional
Probab=73.94 E-value=42 Score=27.91 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=39.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|-.|.++|....+.|.+++++...... ....+.++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 566889999999999999999999998887654321 1123445667777766543
No 211
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=73.91 E-value=28 Score=28.35 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=37.4
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
+.+.+|+..+|..|.+++......|.+++++...... ......++..|.++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 3667889999999999999888889987777554211 223344555675554444
No 212
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.90 E-value=29 Score=27.97 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|.+++......|.+++++..... .....+.++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 56688888899999999999888988766544321 12233445566877755543
No 213
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.86 E-value=41 Score=28.85 Aligned_cols=74 Identities=28% Similarity=0.327 Sum_probs=50.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HHHHHcCC-E-EEEECCC-CCHHHHHHHHHHHHHhCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERR-IVLRALGA-E-IILADSA-LRFEEILEKGEEILKKTP 142 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~-~~l~~~Ga-~-V~~v~~~-~~~~~~~~~a~~~~~~~~ 142 (229)
+..+||..|+--|.++|+.-.+.|.+.++++.......++ +.++..++ + ++....+ .+.+++.....+.-++.+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 5668898889999999999999999999999887666666 67766553 3 5444432 234444444444444443
No 214
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.65 E-value=34 Score=27.77 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|.+++..-...|.+++++....... .....++..+.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 5668899999999999999888899888876543222 223445556777655543
No 215
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.63 E-value=30 Score=27.87 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=38.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+.++|..|.+++....+.|.+++++...... ......++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 566889999999999999988889987777654221 2334455666766655543
No 216
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.57 E-value=29 Score=28.03 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA 124 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.+.+|+.++|..|.+++....+.|..++++...... ......++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 566899999999999999999999987776543211 11233345556666655543
No 217
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.38 E-value=29 Score=28.59 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=36.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+.++|--|.+++......|.+++++...... ....+.++..+.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 567999999999999999988899988776543211 122333444565655443
No 218
>PRK06128 oxidoreductase; Provisional
Probab=73.34 E-value=44 Score=28.25 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=45.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
++.+|+.++|-.|+++|....+.|.++++...... .....+.++..|.++..+..+- +.++..+...+..++
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999998877643221 1233455667787776655332 233333444444443
No 219
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=73.15 E-value=18 Score=31.87 Aligned_cols=55 Identities=36% Similarity=0.423 Sum_probs=41.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+.++.+.+|...+|..|.+++..|+.+|.+.+++.+ +..+.+.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 34566677566666799999999999999999766543 55778888889986544
No 220
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.15 E-value=10 Score=35.55 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC------------------CCHHHHHHHHHcCCEEEEE
Q 027019 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST------------------CSMERRIVLRALGAEIILA 121 (229)
Q Consensus 66 ~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~------------------~~~~~~~~l~~~Ga~V~~v 121 (229)
.+|.+ |+..++|..|++.|+.+++.|.+++++=... ....+++.++.+|+++..-
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34444 8999999999999999999999977763221 1234667788899987653
No 221
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.08 E-value=27 Score=28.75 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=34.2
Q ss_pred CeEEEEe-CCC---hHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCC
Q 027019 69 KTTLIEV-TSG---NTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGA 116 (229)
Q Consensus 69 ~~~vv~~-s~G---N~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga 116 (229)
.+.+|++ |.| .+..|||.+|++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 4446655 444 36899999999999999999998654 344555555554
No 222
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.07 E-value=29 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=25.9
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp 100 (229)
+..+|+.++ +.-|+++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 556777777 68999999999999999777644
No 223
>PRK07806 short chain dehydrogenase; Provisional
Probab=73.05 E-value=40 Score=27.25 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|.+++......|.+++++...... ......++..+.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc
Confidence 566888989999999999988899998877654221 1123345556776665543
No 224
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=72.95 E-value=38 Score=29.08 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=38.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 65 ~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.++.+.+|.+ +|..|.+++..|+.+|.+.++++ ..+..+.+.++.+|++.+.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45566766654 68899999999999999855555 3366788888889986433
No 225
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=72.93 E-value=57 Score=27.60 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=39.3
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
...+.++.+.+|. .+|..|.+++..|+..|++++ ++.......+.+.++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 3455667776675 478999999999999999954 34333346677888889985
No 226
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.91 E-value=57 Score=29.42 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
+.+.+|+..+|..|.++|....+.|.+++++-.........+..+..+++.+.++-. +.++..+......++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 356788888899999999999999999777654332233333345567777777753 333333333334333
No 227
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=72.84 E-value=34 Score=27.88 Aligned_cols=54 Identities=26% Similarity=0.113 Sum_probs=36.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
...+|+..+|..|+++|....+.|.+++++...... ......++..+.++..+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 567999999999999999999999887766433211 122334555566665544
No 228
>PRK09134 short chain dehydrogenase; Provisional
Probab=72.71 E-value=49 Score=27.06 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+..+|.-|.+++....+.|..++++...+... .-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 5679999999999999999999999887765433211 12334445577776554
No 229
>PRK07677 short chain dehydrogenase; Provisional
Probab=72.64 E-value=32 Score=28.02 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=35.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+..+|..|.+++....+.|..++++...... ......++..+.++..+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 456889999999999999999999977666433211 122233444566665554
No 230
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=72.61 E-value=39 Score=26.98 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=38.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|..++......|..++++....... .....++..|.++..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 4568888899999999999888899976665443222 224455667877766553
No 231
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=72.59 E-value=27 Score=25.28 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEECCCC-CHHH
Q 027019 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSAL-RFEE 129 (229)
Q Consensus 52 a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~~-~~~~ 129 (229)
+......|.+.+- +..++...+|++++.+|.+ +-..+.+++.|... ..++| -.+|..-+..+... +.++
T Consensus 5 a~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~---~~r~l~l~~GV~p~~~~~~~~~~~~ 75 (117)
T PF02887_consen 5 ARAAVELAEDLNA----KAIVVFTESGRTARLISKY--RPKVPIIAVTPNES---VARQLSLYWGVYPVLIEEFDKDTEE 75 (117)
T ss_dssp HHHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHH---HHHHGGGSTTEEEEECSSHSHSHHH
T ss_pred HHHHHHHHHhcCC----CEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHH---HHhhhhcccceEEEEeccccccHHH
Confidence 3344444555541 2224444458888776653 34577777766532 22223 34577776666433 4556
Q ss_pred HHHHHHHHHHhC
Q 027019 130 ILEKGEEILKKT 141 (229)
Q Consensus 130 ~~~~a~~~~~~~ 141 (229)
..+.+.+.+++.
T Consensus 76 ~~~~a~~~~~~~ 87 (117)
T PF02887_consen 76 LIAEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 666666665554
No 232
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.29 E-value=36 Score=27.60 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=37.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
+.+|+..+|..|.+++....+.|.+++++-..... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35888889999999999999999987666543211 2234456667877765553
No 233
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.23 E-value=34 Score=27.27 Aligned_cols=64 Identities=27% Similarity=0.347 Sum_probs=40.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
.+-|--.|||-+|.++|..+...|..++++......+. -.+.+++.+. +..|..+.+.+...+.
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~---sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVE---SAEEMLEAVKELLPSA 83 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-S---SHHHHHHHHHHHGGGG
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEec---chhhhhhhhccccCcc
Confidence 34456678899999999999999999999986632111 2466777776 3566666666665554
No 234
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.96 E-value=58 Score=28.40 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=40.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
...+.++.+.+|. ++|..|.+++..|+.+|.+.++.+.. +..|.+.++.+|++.++.
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 3456667775666 56899999999999999975555433 356777778889865543
No 235
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.96 E-value=20 Score=32.41 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+...+|.+ ++..+.|.-|+.+|..++.+|.+++++ +.++.+....+.+|++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 43345554 899999999999999999999975553 224556667777888654
No 236
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=71.83 E-value=25 Score=28.77 Aligned_cols=53 Identities=23% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 027019 50 RIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (229)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~ 102 (229)
|+..+.+..+.++-.......+++.-+.||-|+.+|......|.+++.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 45666666665443233333459999999999999999999999988887653
No 237
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=71.83 E-value=32 Score=30.79 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=71.8
Q ss_pred EeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 027019 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (229)
Q Consensus 37 K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga 116 (229)
|....++ |. +.+-..-.+.+ -.| .+..+..+||-.++.+|+.+-..|=.-.|++|.-+.......+...||
T Consensus 26 ~sg~i~~-G~-~v~~FE~~~ae--~~G-----~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga 96 (374)
T COG0399 26 KSGWLTG-GP-FVRRFEQAFAE--YLG-----VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGA 96 (374)
T ss_pred HcCCeec-Ch-HHHHHHHHHHH--HhC-----CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCC
Confidence 4444444 44 44444443332 234 455888888899988888755577678999999888999999999999
Q ss_pred EEEEECCC-CCHH---HHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHH
Q 027019 117 EIILADSA-LRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (229)
Q Consensus 117 ~V~~v~~~-~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 164 (229)
+.+++|.+ .++. +.++.+ +..+......++-+.++...+ ....++
T Consensus 97 ~PVFvDid~~T~nid~~~ie~a--It~~tKAIipVhl~G~~~dm~-~i~~la 145 (374)
T COG0399 97 KPVFVDIDPDTLNIDPDLIEAA--ITPRTKAIIPVHLAGQPCDMD-AIMALA 145 (374)
T ss_pred eEEEEecCCcccCCCHHHHHHH--cccCCeEEEEehhccCCCCHH-HHHHHH
Confidence 99999954 2222 222222 222222334566667776654 333344
No 238
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=71.81 E-value=34 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=37.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 567899999999999999988999988776544221 122344455676665544
No 239
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=71.75 E-value=44 Score=28.08 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=39.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+.+.++.+.+|...+|..|.+++..|+.+|.+.+++.... .+.+.++.+|++-+.
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~~~ 188 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGADEVI 188 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCCEEe
Confidence 34456667766666778999999999999999977665543 455666778875433
No 240
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=71.50 E-value=59 Score=27.13 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...+.++...+|. ++|..|.+++..|+.+|++.++++.. ...+...++.+|++-+.
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGATEVV 179 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCceEe
Confidence 35556677776776 46889999999999999993333333 24566677788875444
No 241
>PRK06701 short chain dehydrogenase; Provisional
Probab=71.44 E-value=53 Score=27.69 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=39.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 566899999999999999999899998777554322 2334455666777765543
No 242
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.40 E-value=32 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|.-|.+++....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 567889999999999999999999987766554
No 243
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.34 E-value=46 Score=26.97 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=43.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
+.+|+..+|.-|.+++......|.+++++.....+ ....+.++..+.++..+..+- +.++..+...+..++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAA 77 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 45889999999999999988899988777644222 223444555677666654332 233333333444333
No 244
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.24 E-value=34 Score=29.05 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+...+.++.+.+|. ..|..|.+++..|+..|++++++.+.. .+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcE
Confidence 45556777775665 578999999999999999876665543 5666667788753
No 245
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=71.08 E-value=63 Score=27.28 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=39.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~ 120 (229)
.+.+.++.+.+|...+|..|.+++..|+.+|.+++++.+ +..+.+.++. +|++-+.
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAI 196 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEE
Confidence 345566666666666799999999999999998655543 3356666666 8875443
No 246
>PRK06720 hypothetical protein; Provisional
Probab=70.91 E-value=48 Score=25.83 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=43.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
...+|+..++-.|.++|......|.+++++-...... .-.+.+...|.++..+..+ .+.++..+...+..++.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5668888888899999999888998876664332211 1224455567665544322 23444444444444443
No 247
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=70.67 E-value=38 Score=29.70 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+...+.++.+.+| ...|..|.+++..|+.+|...++++. ....+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3445666777566 56789999999999999985444443 3567888888899854
No 248
>PLN02702 L-idonate 5-dehydrogenase
Probab=70.36 E-value=51 Score=28.65 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+...+.++...+|. ..|..|.++...++.+|.+.++.+.. +..+.+.++.+|++....
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~~ 232 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIVL 232 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEe
Confidence 44456667775666 57899999999999999986666544 467777888899876543
No 249
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=70.35 E-value=29 Score=29.31 Aligned_cols=52 Identities=12% Similarity=-0.058 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
-|+..+.+..+.+.........+++.-+.||-|..+|......|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4577777777765444444344699999999999999999999999887754
No 250
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=70.31 E-value=43 Score=29.99 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=71.1
Q ss_pred CchhhHHHHHHHHH----HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 45 SSVKDRIAYSMIKD----AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 45 GS~K~R~a~~~l~~----a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
|.+..-.|.+.+.. +++.+..-.| ++|-..+.||-|..+|..++.+|++++++=|.... .+....+
T Consensus 89 g~na~aVAE~~~~~lL~l~r~~g~~L~g-ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~---------~~~~~~~ 158 (378)
T PRK15438 89 GCNAIAVVEYVFSSLLMLAERDGFSLHD-RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD---------RGDEGDF 158 (378)
T ss_pred CcCchHHHHHHHHHHHHHhccCCCCcCC-CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc---------ccccccc
Confidence 44444455554433 3333322233 34888888999999999999999999888543110 0111111
Q ss_pred ECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHh---HHhhHHHHHHHhhCCCCcEEEEccCchhHH--HHHHHHH
Q 027019 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKI---HYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFL 195 (229)
Q Consensus 121 v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--aGi~~~~ 195 (229)
.+.+ ++.++. +...++- |.+... -+..+..+.++++ +++.+++-+|-|+.+ ..+..++
T Consensus 159 ----~~L~-------ell~~s-DiI~lh~---PLt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 159 ----RSLD-------ELVQEA-DILTFHT---PLFKDGPYKTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred ----CCHH-------HHHhhC-CEEEEeC---CCCCCcccccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHH
Confidence 1122 233333 4443322 222211 2334666888887 468899999999886 5666676
Q ss_pred Hh
Q 027019 196 KE 197 (229)
Q Consensus 196 ~~ 197 (229)
++
T Consensus 222 ~~ 223 (378)
T PRK15438 222 NE 223 (378)
T ss_pred Hh
Confidence 65
No 251
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=70.18 E-value=41 Score=27.47 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|--|.++|......|.+++++...... ....+.++..+.++..+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 566889989999999999988899987666443211 1123344556777766554
No 252
>PRK12744 short chain dehydrogenase; Provisional
Probab=70.14 E-value=39 Score=27.64 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=43.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCH----HHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-CSM----ERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~-~~~----~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~ 139 (229)
...+|+..+|.-|.++|......|.+++++.... ... ...+.++..+.++..+..+- +.++..+...+..+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5668889899999999999888999977665321 111 22344555677766554322 23333334444433
No 253
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=70.09 E-value=52 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=36.4
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 67 ~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
++...+|. .+|..|.+++..|+..|.+.++++. .+..+...++.+|++.+.
T Consensus 175 ~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 175 ADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVV 225 (350)
T ss_pred CCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEe
Confidence 45554444 6799999999999999996555543 245677777888876443
No 254
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=70.08 E-value=57 Score=26.68 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEEC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 122 (229)
+.+.+|+.++|.-|.++|....+.|.++++......+ ....+.++..|.++..+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3567899999999999999999999988776554322 223445566677765544
No 255
>PRK10083 putative oxidoreductase; Provisional
Probab=69.94 E-value=65 Score=27.44 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=41.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+...+.++.+.+|.. .|-.|.+++..|+. +|.+.++.+.. ...+.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3455667777755655 78889988888886 59887666544 55778888889986554
No 256
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.89 E-value=47 Score=28.40 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=44.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHc--CCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRAL--GAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~--Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
.+.+|+.+++.-|.++|....+.|.+++++...... ...++.++.. +.++.++..+ .+.++..+.+.++.++.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 566889999999999999988899888777554221 1122333322 3455444322 34555556666665544
No 257
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=69.69 E-value=69 Score=27.82 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHH----HHcCCEEEEEC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVL----RALGAEIILAD 122 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l----~~~Ga~V~~v~ 122 (229)
+.+...+.-+.|-+.++-.+|.++|+.+++..|+... +.-++.. +..|+++..+.
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 3554555555899999999999999999999998653 3323322 34588988886
No 258
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=69.35 E-value=42 Score=28.53 Aligned_cols=71 Identities=31% Similarity=0.321 Sum_probs=45.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHH-HHcCCEEEEECCCCC-HHHHHHHHHHHHH
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVL-RALGAEIILADSALR-FEEILEKGEEILK 139 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l-~~~Ga~V~~v~~~~~-~~~~~~~a~~~~~ 139 (229)
.+.+||..|+.-|.++|...++.|.+++++...... ....+++ +.+|.+|....-+-. .++..+...++..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 567999999999999999999999999999876432 1222233 335666655553322 2333333444443
No 259
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=69.30 E-value=61 Score=27.79 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=34.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
++...+.|..|++++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 4777778999999999999999877666443 345666677887754
No 260
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.20 E-value=44 Score=28.35 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=39.3
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
...+.++.+.+|. ..|..|.+++..|+..|++++++.+. ..+.+.++.+|++.+..
T Consensus 157 ~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 157 DAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITRS---PDKRELARKLGADEVVD 212 (330)
T ss_pred hhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhCCcEEec
Confidence 3456666665666 56779999999999999987666443 35666677788765543
No 261
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=69.03 E-value=48 Score=27.90 Aligned_cols=53 Identities=30% Similarity=0.422 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
..+.++.+.+|...+|..|.+++..++..|.+++++... ..+.+.++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 556677777788888999999999999999998777543 24455556666643
No 262
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=68.78 E-value=48 Score=27.96 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=38.2
Q ss_pred CCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 65 ITPGK-TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 65 ~~~g~-~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.++. +.+|...+|..|.+++..|+.+|.+.++.+.. ..+.+.++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 55666 66666667999999999999999986665433 2445666778875433
No 263
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.72 E-value=62 Score=26.96 Aligned_cols=71 Identities=24% Similarity=0.219 Sum_probs=41.0
Q ss_pred CeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEE-EEECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEI-ILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~G--N~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V-~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
+..+|+..++ .-|+++|....+.|.+++++-.......+++.+ +..|..+ +.++- .+.++..+...+..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 5568888775 799999999999999887764322122233333 3346433 33443 2344444444554444
No 264
>PRK06348 aspartate aminotransferase; Provisional
Probab=68.70 E-value=82 Score=27.68 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=32.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
.|+..+++.++..++..+-. +-.-.|+++.-.-..-...++..|++++.++
T Consensus 91 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 91 EIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 47777777887776655442 2223555565444455666777899998886
No 265
>PRK06841 short chain dehydrogenase; Provisional
Probab=68.68 E-value=61 Score=26.26 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=27.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
++.+|+..+|--|.++|....+.|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888889999999999999999987766543
No 266
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=68.62 E-value=70 Score=27.20 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+...+.++.+.+|.. +|..|.+++..|+. .|.+++++.+ +..+.+.++.+|++.+..
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 445567777767766 68899999999997 4988655543 335677777888865543
No 267
>PRK07904 short chain dehydrogenase; Provisional
Probab=68.45 E-value=56 Score=26.85 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=35.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCC--HHHHHHHHHcCC-EEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCS--MERRIVLRALGA-EIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~-g~~~~ivvp~~~~--~~~~~~l~~~Ga-~V~~v~ 122 (229)
.+.+|+..+|-.|.++|....+. |.+++++...... ....+.++..|. ++..+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 55688888999999999887776 4888877654332 223455665553 454443
No 268
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.41 E-value=40 Score=27.25 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=37.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+.++|--|.+++......|.++++.+..... ......++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 466888889999999999988899987766533221 223455666777765554
No 269
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=68.38 E-value=51 Score=27.57 Aligned_cols=92 Identities=5% Similarity=0.057 Sum_probs=46.1
Q ss_pred HHHHHHHHHc--CCeEEEEeCC-CCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEe---eCCCCCCcc
Q 027019 82 VGLAFIAAAR--GYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL---LRQFENPAN 155 (229)
Q Consensus 82 ~alA~~a~~~--g~~~~ivvp~-~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 155 (229)
..+.++++.+ +.+.. -++. +.-...++.....|-.|.+++.+ ...+...++.+.++. +... .++|.+
T Consensus 70 ~gvv~~~~~~~~~~~~~-Rv~G~dl~~~ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~--- 142 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVS-RVAGADLWEALMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFT--- 142 (243)
T ss_pred HHHHHHHHHhcCCCCCC-eeChHHHHHHHHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCC---
Confidence 3566666655 43311 1121 11223344556678899999854 333333344454554 3322 233322
Q ss_pred HHhHHhhHHHHHHHhhC-CCCcEEEEccCch
Q 027019 156 PKIHYETTGPEIWQDSG-GKVDAFISGIGTG 185 (229)
Q Consensus 156 ~~~g~~t~a~Ei~~q~~-~~~d~iv~pvG~G 185 (229)
++ - ..++.+++. ..+|.++|+.|+-
T Consensus 143 ~~-e----~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 143 PE-Q----RQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred HH-H----HHHHHHHHHhcCCCEEEEECCCc
Confidence 21 1 123455542 3689999999974
No 270
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=68.28 E-value=43 Score=29.43 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+...+.++.+.+|. +.|..|.+++..|+.+|.+.++++.. ...+++.++.+|++-
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~~ 238 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGATE 238 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCce
Confidence 44556777775666 67999999999999999954444432 446777778899853
No 271
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=68.15 E-value=76 Score=27.05 Aligned_cols=54 Identities=35% Similarity=0.481 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+...+.++...+|. .+|..|.+++..|+..|++++++.. +..+...++.+|++-
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~~ 206 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGADD 206 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCCE
Confidence 34556677776666 5688899999999999999766643 356666777788643
No 272
>PRK06483 dihydromonapterin reductase; Provisional
Probab=68.01 E-value=62 Score=25.98 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=44.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILK 139 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~ 139 (229)
++.+|+..+|-.|+++|......|.+++++-.... ...+.++..|+..+.++-. +.++..+...+..+
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 45688999999999999998889998887754322 2345556677777777643 23333333444433
No 273
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=67.87 E-value=47 Score=27.68 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+.+.++...+|...+|..|.+++..|+..|.+++++.+. .+.+.++.+|++-+
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~~ 191 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADEV 191 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCEe
Confidence 345666776666667999999999999999987666532 56666677887433
No 274
>PRK08017 oxidoreductase; Provisional
Probab=67.66 E-value=65 Score=26.09 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=38.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
+.+|+..+|.-|.+++....+.|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 45888888999999999998889987666443 3455556667888777764
No 275
>PRK09291 short chain dehydrogenase; Provisional
Probab=67.49 E-value=26 Score=28.55 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=36.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMER-RIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~-~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|..|.+++......|.+++++......... ....+..+.++..+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 356899999999999999999999998887764321111 222344555554443
No 276
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=67.33 E-value=43 Score=28.35 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=30.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivv 99 (229)
+...+.++.+.+|...+|..|.+++..|+..|.+++++.
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 335566777766766679999999999999999866653
No 277
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=67.27 E-value=83 Score=27.18 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~-~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.+.++.+.+|. .+|..|.+++..|+.+|. +++++. .+..+...++.+|++-+.
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADATI 227 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeEE
Confidence 334466676666 469999999999999999 544442 245677777888985433
No 278
>PLN02827 Alcohol dehydrogenase-like
Probab=67.24 E-value=56 Score=28.80 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...+.++.+.+|. ..|-.|.+++..|+.+|.+.++.+.. +..+.+.++.+|++-++
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 34556777775666 46889999999999999875555432 45678888889996543
No 279
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=67.21 E-value=62 Score=26.53 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=35.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~v~ 122 (229)
...+|+..+|..|.++|....+.|.+++++-.. ..+.+.+.. ++.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 566899999999999999999999987766332 233444433 455554443
No 280
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=67.20 E-value=70 Score=26.30 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+...+.++...++...+|..|.++...++..|++.+++.+. ..+.+.++.+|++-
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 168 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPH 168 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCE
Confidence 45667777776776778999999999999999986666443 34666667788743
No 281
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.15 E-value=64 Score=27.66 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+...+.++.+.+|. ++|..|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 356677888886775 46788999999999999984444322 24566666777876544
No 282
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=67.09 E-value=54 Score=28.02 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 50 RIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
-.+...+..+.+.........+++..+.|+.|.++|..++.+|.+++++-+. ..+......+|.+
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 3455555555543222222335888888999999999999999977666443 2344445556654
No 283
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=66.97 E-value=45 Score=26.96 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~-~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|-.|.+++....+.|.+++++........ ....++..+.++..+..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 34588888999999999998888998777765432221 22234455667655543
No 284
>PRK05370 argininosuccinate synthase; Validated
Probab=66.94 E-value=1e+02 Score=28.21 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-CC----C-HHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHHHh
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TC----S-MERRIVLRALGA-EIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~-~~----~-~~~~~~l~~~Ga-~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
|.+.+++.|+|.-..-+...-+.-|++++.|.-+ .. . ....+.....|| +++.++....|.+.. . ..-+-
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~--i-~aI~a 87 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEG--I-AAIQC 87 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHH--H-HHHHc
Confidence 4666777788765444444344449998888743 21 1 244556678999 688888543332221 1 11111
Q ss_pred CCCeEee----CCCCCCccHHhHHhhHHH---HHHHhhCCCCcEEEEc-cCchhHHHHHHHHHHhcCCCcEEEE
Q 027019 141 TPDGYLL----RQFENPANPKIHYETTGP---EIWQDSGGKVDAFISG-IGTGGTVTGAGRFLKENNPDIKVYG 206 (229)
Q Consensus 141 ~~~~~~~----~~~~~~~~~~~g~~t~a~---Ei~~q~~~~~d~iv~p-vG~Gg~~aGi~~~~~~~~~~~~vig 206 (229)
+..|. +.|-... + .+.--++. |+.++. ..|+|... +|-|-=..=.-.+++...|+.+||+
T Consensus 88 --nA~Y~~~~e~~Y~l~t-~-LaRplia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~Via 155 (447)
T PRK05370 88 --GAFHISTGGVTYFNTT-P-LGRAVTGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYK 155 (447)
T ss_pred --CCccccccCccccCCC-c-chHHHHHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEec
Confidence 22221 1111100 1 12233444 444443 46777744 5677777777788888899988876
No 285
>PRK07550 hypothetical protein; Provisional
Probab=66.91 E-value=89 Score=27.42 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=43.5
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
.|.-..|.+..-.... ..|. +.+ ..|+..++++.+..++..+- .+-.-.|++|.-.-......++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 5666666544432211 1221 222 33676677777776665443 33345567766443444556788999999988
Q ss_pred C
Q 027019 123 S 123 (229)
Q Consensus 123 ~ 123 (229)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 286
>PRK07062 short chain dehydrogenase; Provisional
Probab=66.88 E-value=53 Score=26.89 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=28.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
...+|+.+++..|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 567899999999999999999999997776554
No 287
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=66.60 E-value=66 Score=25.78 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=36.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
+|+..+|..|.++|....+.|.+++++...... ....+.++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 688888999999999999999997766543221 2234455666777766553
No 288
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.58 E-value=50 Score=28.33 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 66 ~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.++.+.+|.+ +|..|.+++..|+.+|.+.++++ ..+..+....+.+|++-+.
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~ 213 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVI 213 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceee
Confidence 4566666654 68999999999999998655555 3355777777888985443
No 289
>PRK08265 short chain dehydrogenase; Provisional
Probab=66.52 E-value=68 Score=26.33 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+.++|--|+++|....+.|.+++++-... ....+..+..+.++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIA 58 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEE
Confidence 5668899999999999999999999877664332 112222334465655544
No 290
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=66.49 E-value=85 Score=27.35 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+...+.++.+.+|. +.|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++-
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 231 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGATE 231 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCCe
Confidence 34556777776665 67999999999999999886555432 456777778888843
No 291
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=66.25 E-value=61 Score=27.64 Aligned_cols=56 Identities=27% Similarity=0.258 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
....+.++.+.+|. .+|..|.++...|+.+|...++.+ ..+..+.+.++.+|++-+
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~v 216 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDI 216 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEE
Confidence 34456677776664 568899999999999997444444 234566777777886543
No 292
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=66.22 E-value=33 Score=31.17 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=40.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---C--CHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPST---C--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~---~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
.++..++||.|.-+|..+.++|.+++++.... . ....++.++..|.+++...
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 48999999999999999999999988887643 1 2334566777888876543
No 293
>PRK07985 oxidoreductase; Provisional
Probab=66.18 E-value=54 Score=27.72 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=36.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CC--HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-CS--MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~-~~--~~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+..+|.-|.++|....+.|.++++.-... .. ....+.++..|.++..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 5679999999999999999999999987654321 11 112233445677765544
No 294
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=66.08 E-value=54 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
+.|+..++|..|++.|+...+.|.+++||=.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 4599999999999999999999999999943
No 295
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=66.02 E-value=73 Score=26.10 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=52.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-------------HHHHHHcCCEEEEECCCCCHHHHHHHHHHH
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMER-------------RIVLRALGAEIILADSALRFEEILEKGEEI 137 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~-------------~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~ 137 (229)
++...+.||-|.++|..-...|.+++|--.+...... ......-.++|+++... |........++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHHH
Confidence 3677888999999999999999988888554332111 01113445788777643 66666666777
Q ss_pred HHhCCCeEeeCCCCCC
Q 027019 138 LKKTPDGYLLRQFENP 153 (229)
Q Consensus 138 ~~~~~~~~~~~~~~~~ 153 (229)
....++...++.. ||
T Consensus 81 ~~~~~~KIvID~t-np 95 (211)
T COG2085 81 RDALGGKIVIDAT-NP 95 (211)
T ss_pred HHHhCCeEEEecC-CC
Confidence 6655567777653 44
No 296
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=65.92 E-value=82 Score=26.62 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.+.++...+|...+|-.|.+++..|+..|.+++++.. +..+...++.+|++-+.
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 189 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRPI 189 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceEE
Confidence 45667777777777899999999999999998666543 33455666778875443
No 297
>PRK08264 short chain dehydrogenase; Validated
Probab=65.89 E-value=36 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~-~~~ivvp~ 101 (229)
.+.+|+..+|..|.++|....+.|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4568899999999999999999998 76666543
No 298
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=65.77 E-value=50 Score=28.38 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=38.2
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 66 ~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
.++.+.+|...+|..|.+++..|+.+|.+.+... . ..+.+.++.+|++-++.
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~v~~ 204 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADAVFD 204 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCEEEE
Confidence 4566767777679999999999999999876654 2 25666777888854433
No 299
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.69 E-value=69 Score=25.73 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=27.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 566899999999999999999999997776554
No 300
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.48 E-value=73 Score=27.15 Aligned_cols=58 Identities=31% Similarity=0.465 Sum_probs=42.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 60 ~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.....+.++.+.+|.+ +|..|.+++..++.+|.+.++.+.. +..+...++.+|++-+.
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~i 211 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGADIVV 211 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEE
Confidence 3455667777766664 6899999999999999886666443 45777788889985433
No 301
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=65.41 E-value=83 Score=26.54 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=45.6
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-----HHH
Q 027019 34 IAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-----MER 107 (229)
Q Consensus 34 i~~K~E~~~ptG-S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-----~~~ 107 (229)
|.+..|...-.| +|=.|.. .+.....++|. .-.+++-..++... ..-+..|+++..+ |+... ...
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl-~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCL-TLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHH-HHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 566666665444 4555543 33344445552 33355555444432 2346789986665 54321 235
Q ss_pred HHHHHHcCCEEEEECC
Q 027019 108 RIVLRALGAEIILADS 123 (229)
Q Consensus 108 ~~~l~~~Ga~V~~v~~ 123 (229)
.+.++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 6677778889999985
No 302
>PRK06101 short chain dehydrogenase; Provisional
Probab=65.37 E-value=65 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=35.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcC--CEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG--AEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~G--a~V~~v~~ 123 (229)
..+|+.++|..|.++|..-...|.+++++... ..+.+.+...+ ...+.++-
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~ 55 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDV 55 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeC
Confidence 45889999999999999988899997776543 34555554444 34444443
No 303
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=65.35 E-value=57 Score=27.68 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=37.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~-g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.+.+|...+|..|.+++..|+.+ |++++++... ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 567677777799999999999987 9887666443 3566667778886544
No 304
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.35 E-value=72 Score=26.27 Aligned_cols=73 Identities=22% Similarity=0.152 Sum_probs=41.5
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-Hc-CCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-AL-GAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~-Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
+..+|+.++ +.-|+++|....+.|.++++.-........++.+. .. |.++..+..+ .+.++..+...+..++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 556777765 78999999999999998776643322233344332 22 4455444322 23344444445554444
No 305
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.34 E-value=64 Score=25.84 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=36.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~~~Ga~V~~v~~ 123 (229)
++.+|+..+|..|.+++....+.|.+++++...+... .....++..+.++..+..
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4568888899999999998888899877763332211 223334445666665553
No 306
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=65.32 E-value=54 Score=28.79 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=33.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
|+..+++..+..++..+....-+-.|+++.-.-..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 6666666777765554443322224666665555566777889999999874
No 307
>PRK07775 short chain dehydrogenase; Provisional
Probab=65.24 E-value=62 Score=26.84 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=37.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|.+++......|.+++++...... ......++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456888888999999999988889987776543211 1123345566777766554
No 308
>PRK05717 oxidoreductase; Validated
Probab=65.00 E-value=75 Score=25.87 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=35.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
+++.+|+..+|.-|.++|......|.+++++-... ....+..+..+.+++.+..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~ 63 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAM 63 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEc
Confidence 36678999999999999999998998877763321 1122223445655555443
No 309
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=64.87 E-value=83 Score=26.36 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+...+.++...+|...+|..|.+++..|+.+|.+++++.+. ..+.+.++.+|++-+
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG---PAKTALVRALGADVA 191 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 34556667776777778999999999999999986555333 345556677887543
No 310
>PRK07774 short chain dehydrogenase; Provisional
Probab=64.86 E-value=64 Score=26.02 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+.++|-.|.+++......|.+++++....... ...+.++..+.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 5568999999999999999999999887775442211 12233444455554443
No 311
>PRK08339 short chain dehydrogenase; Provisional
Probab=64.82 E-value=53 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
+..+|+.++|.-|.++|....+.|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 56689999999999999999999998777644
No 312
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=64.79 E-value=62 Score=28.99 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=59.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (229)
++|-.-+.||-|..+|..++.+|++++++=|..... -+ .+.++ +. .++.++. +...+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~--------~~-~~~~~----~l-------~ell~~a-DiV~lh- 174 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA--------EG-DGDFV----SL-------ERILEEC-DVISLH- 174 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc--------cc-Ccccc----CH-------HHHHhhC-CEEEEe-
Confidence 348888889999999999999999998885532100 01 00011 12 2333333 443332
Q ss_pred CCCCccHH---hHHhhHHHHHHHhhCCCCcEEEEccCchhHH--HHHHHHHHh
Q 027019 150 FENPANPK---IHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (229)
Q Consensus 150 ~~~~~~~~---~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~ 197 (229)
-|.+.+ .=+..+..+.++++ +++.+++-++.|+.+ ..+..++++
T Consensus 175 --~Plt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 175 --TPLTKEGEHPTRHLLDEAFLASL--RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred --CcCCCCccccccccCCHHHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 222221 11344566778887 467899999999886 456666654
No 313
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=64.52 E-value=80 Score=26.03 Aligned_cols=57 Identities=30% Similarity=0.410 Sum_probs=40.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
.+.+.++...+|...+|..|.+++..++.+|.+++++.. +..+.+.++.+|++-+..
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 187 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVIN 187 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEEe
Confidence 355666777666666799999999999999998665532 345666677788754443
No 314
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=64.51 E-value=82 Score=26.14 Aligned_cols=57 Identities=28% Similarity=0.351 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+...+.++.+.+|...+|..|.+++..++..|.+++++... ..+.+.++.+|++.+.
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIAI 189 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 45567777777777778999999999999999987665443 3445556777775443
No 315
>PRK06138 short chain dehydrogenase; Provisional
Probab=64.49 E-value=68 Score=25.83 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=41.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
.+.+|+..+|-.|.++|....+.|.+++++...... ......++ .+.++..+..+ .+.++..+...+..++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 566999999999999999888889887666543211 12223333 46666555432 2333333333444333
No 316
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=64.32 E-value=67 Score=26.95 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=35.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
...+|...+|..|.+++..|+..|.+++++.+ +..+.+.++.+|++-+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 45466666799999999999999999555533 34567777888985443
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=64.30 E-value=75 Score=25.61 Aligned_cols=54 Identities=31% Similarity=0.490 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+.++.+.++...++ .|.+++..++..|.+++++.+. ..+.+.++.+|++.+.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 3335566656666666 9999999999999777666443 3556666777765443
No 318
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=64.30 E-value=93 Score=27.36 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=53.0
Q ss_pred eEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHH-HHHHHHHHHHHhCCCeEee
Q 027019 70 TTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE-EILEKGEEILKKTPDGYLL 147 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~-~~~~~a~~~~~~~~~~~~~ 147 (229)
.+++.+++|..|.-.|..=-. -|=++.++.-..-...-.+..+.+|++|..+..+.+-. --......+++..++.+|+
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 458888888777665543332 24445555444556667788899999998887432111 1233445566666788888
Q ss_pred CCCCCCcc
Q 027019 148 RQFENPAN 155 (229)
Q Consensus 148 ~~~~~~~~ 155 (229)
-+.+....
T Consensus 149 ~hgdsSTg 156 (385)
T KOG2862|consen 149 THGDSSTG 156 (385)
T ss_pred EecCcccc
Confidence 77665544
No 319
>PRK06500 short chain dehydrogenase; Provisional
Probab=64.26 E-value=74 Score=25.56 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH-HHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRI-VLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~-~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|..|.+++......|.+++++... ..+.+ ..+..|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 566889999999999999999999987666433 22222 2344577665543
No 320
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.17 E-value=87 Score=26.34 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEeCC
Q 027019 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN----PDIKVYGVEPS 210 (229)
Q Consensus 163 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~----~~~~vigVep~ 210 (229)
...+++++- .++|.|+|. +...+.|+..++++.+ .++.|+|++-.
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 445555543 478998863 4556779999998866 36889998754
No 321
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=63.84 E-value=48 Score=26.78 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=37.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
+.+|+.++|..|.++|....+.|.++++....... ......++..+.++..+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45888888999999999988899887765533221 1234455666777665543
No 322
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=63.83 E-value=1.1e+02 Score=28.01 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=45.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEEECCCC-CH-HHHHHHHHHHHHhCCCeEee
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIILADSAL-RF-EEILEKGEEILKKTPDGYLL 147 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~-~~~~~~a~~~~~~~~~~~~~ 147 (229)
.|+..++...+.. ..++.+--+ -+|++..-+-..-+..++.+|++++.++.+. +. .++.+.+ ..+..+...|+
T Consensus 157 ~IiiT~G~q~al~--l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~--~~~~~~k~~y~ 232 (459)
T COG1167 157 QIVITSGAQQALD--LLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEA--LAQWKPKAVYV 232 (459)
T ss_pred eEEEeCCHHHHHH--HHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHH--HhhcCCcEEEE
Confidence 3666666455554 444443223 5556655556677888999999999998542 22 1333322 22213455555
Q ss_pred CC-CCCCcc
Q 027019 148 RQ-FENPAN 155 (229)
Q Consensus 148 ~~-~~~~~~ 155 (229)
.+ +.||..
T Consensus 233 ~P~~qNPtG 241 (459)
T COG1167 233 TPTFQNPTG 241 (459)
T ss_pred CCCCCCCCC
Confidence 44 678865
No 323
>PRK09242 tropinone reductase; Provisional
Probab=63.69 E-value=65 Score=26.22 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHc--CCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRAL--GAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~--Ga~V~~v~~ 123 (229)
++.+|+..+|..|.+++......|.+++++....... .....++.. +.++..+..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 5668888899999999999999999877765432111 122233333 667766653
No 324
>PRK08251 short chain dehydrogenase; Provisional
Probab=63.63 E-value=65 Score=25.99 Aligned_cols=55 Identities=29% Similarity=0.324 Sum_probs=35.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHc--CCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRAL--GAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~--Ga~V~~v~~ 123 (229)
.+.+|+.++|..|.++|....+.|.++++........ .....+... +.++..+..
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAAL 60 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEc
Confidence 4568899999999999999888898776665432111 112222222 667766553
No 325
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=63.61 E-value=35 Score=31.98 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=40.3
Q ss_pred EEEEeCC---ChHHHHHHHHHHHcC-CeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTS---GNTGVGLAFIAAARG-YNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~---GN~g~alA~~a~~~g-~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
+|+..+. +|.++|++..+..+| +.++++.|+.. +...++.++..|+.+....
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 3555555 799999999999998 99999999864 4455566777888887655
No 326
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=63.54 E-value=57 Score=29.78 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=37.5
Q ss_pred EEEeCC---ChHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTS---GNTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~---GN~g~alA~~a~~~-g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
|+..+. +|.+++++..+..+ |++++++.|+.. +...++.++..|..|..++
T Consensus 244 Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 244 IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 555555 69999999997765 999999999864 4445556666677776654
No 327
>PRK14031 glutamate dehydrogenase; Provisional
Probab=63.54 E-value=40 Score=30.90 Aligned_cols=52 Identities=10% Similarity=-0.080 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
-|+..+.+.++.+.........+++.-+.||-|...|.....+|.+++++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4577777777765443444445688999999999999999999999999877
No 328
>PRK05693 short chain dehydrogenase; Provisional
Probab=63.50 E-value=84 Score=25.92 Aligned_cols=66 Identities=24% Similarity=0.185 Sum_probs=43.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILK 139 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~ 139 (229)
+.+|+..+|-.|.+++......|.+++++... ..+.+.+...+.+.+.++-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 45888889999999999998999988776543 24455555667777766643 23333333334433
No 329
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=63.50 E-value=63 Score=27.53 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILA 121 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v 121 (229)
..+.++.+.+|...+|..|.+++..|+.+|.++++.+.... ...+.+.++.+|++-+..
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34566666555556799999999999999999877765432 124556667788865543
No 330
>PRK05650 short chain dehydrogenase; Provisional
Probab=63.45 E-value=62 Score=26.65 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=37.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 123 (229)
.+|+.++|..|.+++......|.+++++...... ......++..|.++..+..
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 4888999999999999988899998777654321 2223445666777755543
No 331
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.45 E-value=53 Score=31.42 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=40.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEEE
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIILA 121 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~v 121 (229)
..|+..++|-.|++.|+..++.|.++++|-.... + ...++.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 4589999999999999999999999988854321 1 12566778899988654
No 332
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=63.33 E-value=71 Score=29.52 Aligned_cols=85 Identities=25% Similarity=0.257 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEEeC-CChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC-C
Q 027019 47 VKDRIAYSMIKDAEDKGLITPGKTTLIEVT-SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS-A 124 (229)
Q Consensus 47 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s-~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~-~ 124 (229)
..+..+...+.-|...+ .+.||+.| +|++++.+|.+ +...+.+++.|......++ --.+|..-+.++. .
T Consensus 357 ~~~~ia~~a~~~a~~~~-----akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~~v~R~L--~L~wGV~Pil~~~~~ 427 (473)
T TIGR01064 357 ITEAIALSAVEAAEKLD-----AKAIVVLTESGRTARLLSKY--RPNAPIIAVTPNERVARQL--ALYWGVFPFLVDEEP 427 (473)
T ss_pred hHHHHHHHHHHHHhhcC-----CCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCCHHHHHHh--hccCCcEEEEeCCCC
Confidence 34455555555555544 34455555 47777776654 4556777776653222222 2235766666553 2
Q ss_pred CCHHHHHHHHHHHHHh
Q 027019 125 LRFEEILEKGEEILKK 140 (229)
Q Consensus 125 ~~~~~~~~~a~~~~~~ 140 (229)
.+.++....+.+.+++
T Consensus 428 ~~~~~~i~~a~~~l~~ 443 (473)
T TIGR01064 428 SDTEARVNKALELLKE 443 (473)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 2334444445444443
No 333
>PRK06198 short chain dehydrogenase; Provisional
Probab=63.30 E-value=80 Score=25.64 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+..+|..|..++......|.+.++++...... .....++..+.++..+.
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 5568888889999999999999999845555443221 22335566788875544
No 334
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=63.19 E-value=42 Score=26.32 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC--CCHHH--HHHHHHcC---CEEEEECC
Q 027019 51 IAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST--CSMER--RIVLRALG---AEIILADS 123 (229)
Q Consensus 51 ~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~--~~~~~--~~~l~~~G---a~V~~v~~ 123 (229)
.+...+..+.+.| .+ ++..|+.|... ....++.+|+.-.++.... .|..| .+.++.++ .+|..++.
T Consensus 131 ~~~~~l~~L~~~G-----i~-~~i~TGD~~~~-a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAG-----IK-VAILTGDNEST-ASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTT-----EE-EEEEESSEHHH-HHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccC-----cc-eeeeecccccc-ccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 3566667777776 33 56666555554 4666889999666665665 67777 77777765 47888884
Q ss_pred CCCHHHHH
Q 027019 124 ALRFEEIL 131 (229)
Q Consensus 124 ~~~~~~~~ 131 (229)
+..|+.
T Consensus 204 --g~nD~~ 209 (215)
T PF00702_consen 204 --GVNDAP 209 (215)
T ss_dssp --SGGHHH
T ss_pred --CHHHHH
Confidence 355543
No 335
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=63.17 E-value=86 Score=25.95 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=39.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+.++...+|...+|..|.+++..++..|.++++..+. ..+.+.++.+|++-+.
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEE
Confidence 455666776777777999999999999999886665443 3556666677875443
No 336
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=63.17 E-value=48 Score=28.34 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=28.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC----HHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~----~~~~~~l~~~Ga~V~~v~ 122 (229)
+|.|.+.+.+...+-..+...|.+..+++.++.+ ....+.|...|-.+..+.
T Consensus 112 ~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 112 VIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 3555555445555555556666666666655443 123455566666666655
No 337
>PLN02527 aspartate carbamoyltransferase
Probab=63.16 E-value=55 Score=28.32 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=37.3
Q ss_pred EEEeCCC---hHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTSG---NTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~G---N~g~alA~~a~~~-g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
|+..+.+ |.+++++.++.++ |+.++++.|+.. +....+.++..|.++...+
T Consensus 154 va~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 154 VGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 5555553 6899999998887 999999999864 4455555666777776654
No 338
>PRK07063 short chain dehydrogenase; Provisional
Probab=62.68 E-value=72 Score=26.01 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=42.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHH--cCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRA--LGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~--~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
++.+|+.++|--|+++|......|.+++++...... ....+.++. .+.++..+..+ .+.++..+...+..++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 566899999999999999988999987776543211 122333443 45565544432 2233344444444443
No 339
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=62.46 E-value=60 Score=23.92 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHH-HHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhh
Q 027019 84 LAFIAAARGYNLIIVMPSTCSMERRIV-LRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (229)
Q Consensus 84 lA~~a~~~g~~~~ivvp~~~~~~~~~~-l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (229)
|+...+..+.+.+++..........+. ....+..++.=.+ .++.+.+..+.+.+.+.-....+-..+-|.... .+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 345566778888888765444433333 4445556555433 578888888877763332456666667777653 2333
Q ss_pred HHHHHHHhhCCCCcEEEEccCchhH
Q 027019 163 TGPEIWQDSGGKVDAFISGIGTGGT 187 (229)
Q Consensus 163 ~a~Ei~~q~~~~~d~iv~pvG~Gg~ 187 (229)
-+.+.++ ..|.|+.|+--||.
T Consensus 80 ~A~~~L~----~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 80 QAFEALQ----RHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHTT----T-SEEEEEBTTSSE
T ss_pred HHHHHhc----cCCEEEeeccCCCE
Confidence 3444333 34999999988773
No 340
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.40 E-value=84 Score=25.56 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=44.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
++.+|+.++|-.|.++|......|.+++++.... ....+.++..+...+.++-. +.++..+...+..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 5668999999999999999988999877664432 33445555556666666643 344444444444443
No 341
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=62.37 E-value=39 Score=26.17 Aligned_cols=49 Identities=31% Similarity=0.373 Sum_probs=39.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
.++..++||-|...+.++..+|.+++++ + ....+++..+..++..+.++
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d-~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP--D-ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE--E-SSHHHHHHHHHTTTEESEET
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec--c-CCHHHHHhhhcccCceEEEc
Confidence 4888889999999999999999987766 3 34567778888999888885
No 342
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.19 E-value=57 Score=26.70 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=43.0
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC----CCC----CH----HHHHHHHHcCCEEEEECCCC-CHHHHHHH
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP----STC----SM----ERRIVLRALGAEIILADSAL-RFEEILEK 133 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp----~~~----~~----~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~ 133 (229)
++.+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.++..+..+- +.++..+.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 556777776 48999999999999998777521 110 11 22345667788887665332 23333344
Q ss_pred HHHHHHh
Q 027019 134 GEEILKK 140 (229)
Q Consensus 134 a~~~~~~ 140 (229)
..+..++
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 4444443
No 343
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=62.15 E-value=63 Score=28.24 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=36.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.+.++.+.+| ...|..|.+++..|+.+|.+++++.... ..+.+..+.+|++.+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33456666455 6679999999999999999865543332 2334455678886443
No 344
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.97 E-value=42 Score=31.31 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=39.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
+++..+.|..|++.+..++.+|..++++- ....+++..+.+|++.+.++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEecc
Confidence 47778889999999999999998755542 24457888889999988776
No 345
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=61.90 E-value=84 Score=25.38 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=42.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCC---EEEEECCCC-CHHHHHHHHHHHHHh
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGA---EIILADSAL-RFEEILEKGEEILKK 140 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga---~V~~v~~~~-~~~~~~~~a~~~~~~ 140 (229)
+.+.+|+..+|..|.+++....+.|..++++....... .....++..+. +++.++.+. +.++..+....+.+.
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999888899777665442211 12234444442 344444321 234444444444443
No 346
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=63 Score=23.98 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHH
Q 027019 80 TGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKG 134 (229)
Q Consensus 80 ~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a 134 (229)
.|..+|-.....|..++|. ...-+.-...++..|-+|+..++ .+.++++...
T Consensus 53 ~G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~ 104 (121)
T COG1433 53 AGIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAF 104 (121)
T ss_pred chHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHH
Confidence 3455666666777776666 33344556667788888888776 4666665554
No 347
>PRK09072 short chain dehydrogenase; Provisional
Probab=61.71 E-value=67 Score=26.28 Aligned_cols=33 Identities=36% Similarity=0.406 Sum_probs=27.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
...+|+.++|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 566889999999999999999999987777644
No 348
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=61.62 E-value=55 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+|+.++|..|+++|....+.|.++++.-..
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5889999999999999999999987666443
No 349
>PLN02583 cinnamoyl-CoA reductase
Probab=61.51 E-value=72 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
+.+.+|+..+|-.|.+++......|.++++++..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3567899999999999999999999999888764
No 350
>PRK06197 short chain dehydrogenase; Provisional
Probab=61.49 E-value=77 Score=26.75 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=27.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
...+|+.++|--|.++|....+.|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888888999999999888889988777654
No 351
>CHL00194 ycf39 Ycf39; Provisional
Probab=61.39 E-value=58 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
+.+|+.++|..|..++......|.++++++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 34888899999999999988899998888754
No 352
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=61.20 E-value=60 Score=27.20 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccC
Q 027019 109 IVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (229)
Q Consensus 109 ~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG 183 (229)
+.+...||++.+.-.. +....+.++++++.+. .++.+.+- .+- +....+..+|-++. +.+|.+|.+++
T Consensus 26 k~l~~~GAeL~fTy~~---e~l~krv~~la~~~~s-~~v~~cDV-~~d-~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 26 KALAEQGAELAFTYQG---ERLEKRVEELAEELGS-DLVLPCDV-TND-ESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHcCCEEEEEecc---HHHHHHHHHHHhhccC-CeEEecCC-CCH-HHHHHHHHHHHHhh-CcccEEEEEec
Confidence 3455566666665421 1233445555555422 12222211 111 13334444444444 35566665554
No 353
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=61.19 E-value=47 Score=29.21 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=37.6
Q ss_pred EEEeCC---ChHHHHHHHH-HHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTS---GNTGVGLAFI-AAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~---GN~g~alA~~-a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
|+..+. +|.+.+++.. +..+|+.++++.|+.. +...++.++..|.++..+.
T Consensus 162 ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 162 IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 555555 6889999976 5567999999999864 4555666677777776654
No 354
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=61.14 E-value=22 Score=27.33 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=35.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
+|...+|+.|..++....+.|.++++++........ ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceee
Confidence 677888999999999999999999999987543322 4556666555
No 355
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=61.07 E-value=88 Score=25.35 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=33.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~ 122 (229)
.+|+..+|..|.++|......|.+++++... ..+++.+ ...+.++..+.
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 52 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQ 52 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEE
Confidence 4888889999999999999999987766443 2333333 23455555444
No 356
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=60.92 E-value=65 Score=27.51 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+.+.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|++-+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~ 210 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDV 210 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceE
Confidence 6676676667999999999999999986665532 25556677776433
No 357
>PRK07576 short chain dehydrogenase; Provisional
Probab=60.88 E-value=76 Score=26.12 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|.-|.+++......|.+++++...... ....+.+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 566889999999999999988899987776543211 112234555566665444
No 358
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.82 E-value=87 Score=25.79 Aligned_cols=71 Identities=21% Similarity=0.146 Sum_probs=41.1
Q ss_pred CeEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCC-EEEEECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVT--SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGA-EIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s--~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga-~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
++.+|+.. ++--|+++|....+.|.++++.-.........+.+.. .|. ..+.++- .+.++..+...+..++
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDV-ASDDEINQVFADLGKH 81 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCC-CCHHHHHHHHHHHHHH
Confidence 55677774 5678999999988999988775332222334444433 343 3344443 2445555555555444
No 359
>PRK12747 short chain dehydrogenase; Provisional
Probab=60.74 E-value=58 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=36.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
++.+|+.++|--|.++|....+.|.++++...... .......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 56799999999999999999999988777542221 1222344555566655443
No 360
>PRK05872 short chain dehydrogenase; Provisional
Probab=60.63 E-value=91 Score=26.26 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=41.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHc--CCEEEE--ECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RAL--GAEIIL--ADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~--Ga~V~~--v~~~~~~~~~~~~a~~~~~~ 140 (229)
.+.+|+..+|.-|.++|......|.+++++-.. ..+++.+ +.+ +.+++. ++-. +.++..+...+..++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVT-DLAAMQAAAEEAVER 82 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCC-CHHHHHHHHHHHHHH
Confidence 567899999999999999999999986666432 2233222 223 455655 4432 344444444444444
No 361
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=60.56 E-value=93 Score=25.44 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=41.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
+..+|+..+|.-|.++|......|.+++++-.. ..+.+.+ +.++.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 566899999999999999999999987666433 2333333 2345444443322 2334444444444444
No 362
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=60.20 E-value=1.1e+02 Score=26.15 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
...+.++.+.+|.+ .|..|.++...|+.+|++++++... ..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCCC
Confidence 44466667767776 7899999999999999987666443 3456666778873
No 363
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.08 E-value=45 Score=29.49 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 66 ~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.++.+.+| ..+|..|.+++..|+.+|.+++++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 35666444 456899999999999999985555333 23345666778886543
No 364
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=59.99 E-value=1.2e+02 Score=26.39 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
...+.++.+.+|. ..|..|.+++..|+..|.+.++++.. +..+.+.++.+|++-+
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~~v 231 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGATHT 231 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCeEE
Confidence 4456677776666 56899999999999999874444422 3455666677887433
No 365
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=59.96 E-value=93 Score=25.28 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=27.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|-.|.++|....+.|.+++++...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 566899999999999999999999987777443
No 366
>PRK12831 putative oxidoreductase; Provisional
Probab=59.94 E-value=51 Score=30.19 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=39.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---C--CHHHHHHHHHcCCEEEEEC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPST---C--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~---~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
.|+..++||.|.-+|..+.++|.+++++.... . ....++.++..|.+++...
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 49999999999999999999999988887543 2 2234455667788776543
No 367
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=59.90 E-value=79 Score=26.89 Aligned_cols=53 Identities=28% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 64 LITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 64 ~~~~g~~~vv~~s~GN~g~alA~~a~~~g-~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
.+.++.+.+|.. .|..|.+++..|+..| .+++++.. +..+.+.++.+|++-+.
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHVL 217 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEEE
Confidence 345566656666 6669999999999999 77665533 34566777888875443
No 368
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=59.89 E-value=31 Score=28.14 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCcEEE-EccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027019 163 TGPEIWQDSGGKVDAFI-SGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (229)
Q Consensus 163 ~a~Ei~~q~~~~~d~iv-~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~ 211 (229)
...||+-++ +||.|+ +++-.||.+.=.+.-++..+++-+|+||+-.-
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 445888887 688887 66667776654455566666888999999853
No 369
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=59.74 E-value=33 Score=29.99 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=35.2
Q ss_pred EEEEeCCChHHHHHHHHHHHc----CCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh
Q 027019 71 TLIEVTSGNTGVGLAFIAAAR----GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~----g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
.+++..+=|++-|+|+++... +=..++|+|.+- .+.....|.++++.|.+++++
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~ 137 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEE 137 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHc
Confidence 588888999999998887653 433677777751 122112356677777777665
No 370
>PLN00175 aminotransferase family protein; Provisional
Probab=59.68 E-value=1.3e+02 Score=26.88 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=31.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
|+..+++..+..++..+. ++-.-.|++++-.-..-...++.+|++++.++.
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 666666677766655543 333334555543344456667889999999874
No 371
>PLN02253 xanthoxin dehydrogenase
Probab=59.66 E-value=67 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
++.+|+..+|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 56699999999999999999889998777644
No 372
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=59.65 E-value=86 Score=25.75 Aligned_cols=51 Identities=25% Similarity=0.217 Sum_probs=35.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcC
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALG 115 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~l~~~G 115 (229)
....+.++.+.+|. +.|..|.++...|+.+|.+ ++++. .+..+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~---~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD---PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC---CCHHHHHHHHHcC
Confidence 34566777775665 5789999999999999998 44442 2445566666677
No 373
>PRK13243 glyoxylate reductase; Reviewed
Probab=59.56 E-value=1.2e+02 Score=26.45 Aligned_cols=104 Identities=25% Similarity=0.282 Sum_probs=64.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (229)
++|...+.|+-|.++|..++.+|++++++-+.. ... ....+|+. .. +.+ ++.++. +...+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~--~~----~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAE--YR----PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCE--ec----CHH-------HHHhhC-CEEEEeC
Confidence 358888889999999999999999987775532 221 12334542 11 132 223333 4444432
Q ss_pred CCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHH--HHHHHHHHh
Q 027019 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (229)
Q Consensus 150 ~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~ 197 (229)
|.+.+ -...+..|.++++ +++.+++-++.|+.. ..+..++++
T Consensus 213 ---P~t~~-T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 ---PLTKE-TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred ---CCChH-HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 33332 2344566788887 578899999999886 456666654
No 374
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=59.52 E-value=1.1e+02 Score=26.01 Aligned_cols=56 Identities=32% Similarity=0.390 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
...+.++...+|. ++|-.|.+++..|+..|.+.++++.. +..+...++.+|++-+.
T Consensus 160 ~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~~~~ 215 (343)
T cd08235 160 KAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGADYTI 215 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCcEEe
Confidence 3456777776777 46889999999999999994444322 34555566677775433
No 375
>PRK07832 short chain dehydrogenase; Provisional
Probab=59.31 E-value=89 Score=25.76 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=41.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEE---EEECCCCCHHHHHHHHHHHHHh
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEI---ILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V---~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
+.+|+.++|..|.+++....+.|.+++++...... ....+.++..|+++ +.++-. +.++..+...+..++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS-DYDAVAAFAADIHAA 75 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC-CHHHHHHHHHHHHHh
Confidence 35888999999999999999999987666543211 11234455566653 234432 334444444444333
No 376
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=59.27 E-value=86 Score=26.83 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 65 ~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
+.++.+.+|. ..|..|.+++..|+.+|++++++.+. ..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5666776665 47899999999999999976555433 3456666778876444
No 377
>PRK06953 short chain dehydrogenase; Provisional
Probab=59.22 E-value=89 Score=24.82 Aligned_cols=51 Identities=29% Similarity=0.299 Sum_probs=37.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
+.+|+..+|..|++++......|.+++++... ..+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 45888889999999999888889987776543 2344555566777666664
No 378
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.16 E-value=93 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|..|.++|......|.++++....
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 466899999999999999988899988776543
No 379
>PRK09414 glutamate dehydrogenase; Provisional
Probab=59.16 E-value=51 Score=30.21 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
-|+..+.+..+.+.........+|+.-+.||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577777777765544444345699999999999999999999999888854
No 380
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=59.12 E-value=99 Score=25.30 Aligned_cols=73 Identities=19% Similarity=0.105 Sum_probs=43.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHH-HcCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLR-ALGAEIILADSA-LRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~-~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 141 (229)
++.+|+.+++.-|+++|....+.|.+++++...+... ...+.++ ..|.++..+..+ .+.++..+...++.++.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999977664432211 1122333 346666554432 23444444445554443
No 381
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=59.11 E-value=36 Score=29.97 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=38.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
..++..++|..|..++..+...+-.-.|++|..+-......++..|+++++++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 3477777888877665544333333577888877777788888899999999753
No 382
>PRK05826 pyruvate kinase; Provisional
Probab=59.05 E-value=1.5e+02 Score=27.38 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=69.6
Q ss_pred HHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC---CCH-HHHHHHHHHHHHhCCCeEeeC
Q 027019 84 LAFIAAARGYNLIIV-----------MPSTCSMERRIVLRALGAEIILADSA---LRF-EEILEKGEEILKKTPDGYLLR 148 (229)
Q Consensus 84 lA~~a~~~g~~~~iv-----------vp~~~~~~~~~~l~~~Ga~V~~v~~~---~~~-~~~~~~a~~~~~~~~~~~~~~ 148 (229)
+...|+++|.++++- .|.-.....+...-..|++-+...+. +.| .++++...++.++....++..
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 445688899998874 23333333444555679998888743 223 355554444443221111110
Q ss_pred ---CC-CCC-ccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027019 149 ---QF-ENP-ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (229)
Q Consensus 149 ---~~-~~~-~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~ 211 (229)
.. ... ..........+.++.++++ +.+.||+.+-+|.++--+++ ..|.+.|+++-+..
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk----~RP~~pI~~~t~~~ 406 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLISR----FRPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHh----hCCCCCEEEEcCCH
Confidence 00 010 0111244556667777762 26789999999988665544 46778899888764
No 383
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.04 E-value=1e+02 Score=25.55 Aligned_cols=49 Identities=33% Similarity=0.354 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 67 ~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
++...++...+|..|.+++..|+.+|.+++...+ ...+.+.++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3667677777799999999999999998655533 346777777788753
No 384
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=58.71 E-value=59 Score=24.22 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=34.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
|...+.|+.|.-+|+.-++.|.+++++.... +.+.++..|-.+...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~----~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP----RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH----HHHHHHHHCEEEEETT
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc----cHHhhhheeEEEEecc
Confidence 3556789999999999988999999887653 4455666776654443
No 385
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=58.56 E-value=1.3e+02 Score=26.83 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHc--------CCEEEEEC
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY--NLIIVMPSTCSMERRIVLRAL--------GAEIILAD 122 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~--~~~ivvp~~~~~~~~~~l~~~--------Ga~V~~v~ 122 (229)
+..++++.+.+|...+|..|.+.+..|+.+|. ..++++ +.+..+++.++.+ |++...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 34567777766666679999999989999875 223333 3355677777776 77644443
No 386
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=58.35 E-value=65 Score=27.58 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=28.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHH
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVL 111 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l 111 (229)
+++..++|..++|++++....|++-+.++..+.. ..|.+.+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~l 167 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 167 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHH
Confidence 4666777788999999999999977666655432 3344433
No 387
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=58.27 E-value=99 Score=26.43 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=37.3
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g-~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
...+.++.+.+|. +.|..|.+++..|+.+| .++++ +. .+..+...++.+|++-+
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~~~ 215 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGATHT 215 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCCce
Confidence 3345666776775 46999999999999999 55444 33 24566777788887533
No 388
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=57.99 E-value=84 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=24.2
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 027019 75 VTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (229)
Q Consensus 75 ~s~GN~g~alA~~a~~~g~~~~ivvp~~~ 103 (229)
.+-|.+..+|+.+-++.|.++.|++|...
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 33388888999998999999999999754
No 389
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=57.84 E-value=78 Score=27.35 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHH-HHHcCCEEEEEC
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIV-LRALGAEIILAD 122 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~-l~~~Ga~V~~v~ 122 (229)
.|.++ |.+..+..-.+|.+++++..+.++|++++++.|+... ...++. .+..|.++...+
T Consensus 147 ~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 147 RGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred hCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 45443 3342333334899999999999999999999998643 233333 456788876654
No 390
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=57.75 E-value=1.5e+02 Score=27.08 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=45.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH----HHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEee
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERR----IVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL 147 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~----~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (229)
.+..+||-.|..++..+- ++---.|++|...-.... ..++.+|+++.+++...+.+ .++.+ + .++....|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l~~~--I-~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EIVAL--A-NDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHh--C-CcCCeEEEE
Confidence 566778888888777654 333345666664433222 23678999999998532322 22222 2 223356777
Q ss_pred CCCCCCc
Q 027019 148 RQFENPA 154 (229)
Q Consensus 148 ~~~~~~~ 154 (229)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 6667776
No 391
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=57.66 E-value=71 Score=25.50 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=35.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~~~Ga~V~~v~~ 123 (229)
..+|+..+|..|..+|......|.+++++...+... .....+...+.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEG 57 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 358888899999999999999999887776532111 112334445556655543
No 392
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=57.49 E-value=60 Score=22.26 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH--HHHHcCCeEEEEeCCCCCHHHHHHHHHc-CCEEEE
Q 027019 44 CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF--IAAARGYNLIIVMPSTCSMERRIVLRAL-GAEIIL 120 (229)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~--~a~~~g~~~~ivvp~~~~~~~~~~l~~~-Ga~V~~ 120 (229)
.|....-.+..+..+..... +...++.+++-++.-|++. .|.+.+.|..++- ...+......++.+ ..+|+.
T Consensus 4 ~G~dRyeTs~~va~~~~~~~----~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~i 78 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDN----KSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYI 78 (92)
T ss_pred CCCCHHHHHHHHHHHhcccC----CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEE
Confidence 34444555666655533222 1445777777666655555 4555777776665 77777778888877 568888
Q ss_pred ECCCCCH
Q 027019 121 ADSALRF 127 (229)
Q Consensus 121 v~~~~~~ 127 (229)
+++....
T Consensus 79 iGg~~~i 85 (92)
T PF04122_consen 79 IGGEGAI 85 (92)
T ss_pred ECCCCcc
Confidence 8765433
No 393
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=57.39 E-value=98 Score=24.74 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=36.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 123 (229)
+.+|+..+|..|.+++......|..++++...... ......++..|.++..+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc
Confidence 35888889999999999998899987765544322 1233445566766655543
No 394
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=57.04 E-value=71 Score=32.48 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=28.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
+.|+..++|-.|.++|+...+.|.++++|=.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 4599999999999999999999999999954
No 395
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=56.87 E-value=1.4e+02 Score=26.27 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=32.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
+|...+.||.|.++|...+..|++++++.+..... .+..+..|.+
T Consensus 19 tIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s--~~~A~~~G~~ 63 (330)
T PRK05479 19 KVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS--WKKAEADGFE 63 (330)
T ss_pred EEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh--HHHHHHCCCe
Confidence 37778899999999999999999988876653322 2223456765
No 396
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=56.86 E-value=1.1e+02 Score=26.93 Aligned_cols=55 Identities=27% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+.++.+.+|. ..|..|.+++..|+.+|...++.+.. ...+.+.++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456777776666 57999999999999999854444433 33477888889985543
No 397
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=56.83 E-value=78 Score=23.39 Aligned_cols=53 Identities=30% Similarity=0.318 Sum_probs=34.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCCHH----HHHHHHHcCCEEEEECC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVM-PSTCSME----RRIVLRALGAEIILADS 123 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivv-p~~~~~~----~~~~l~~~Ga~V~~v~~ 123 (229)
.+|+..+|..|.+++....+.|...++++ ....... .++.++..|.++..+..
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 47788889999999998888887544444 3222211 13566667888766653
No 398
>PRK07023 short chain dehydrogenase; Provisional
Probab=56.69 E-value=74 Score=25.62 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=34.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
+.+|+.++|..|.++|....+.|.+++++...... . ..+..+.++..+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~ 51 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVE 51 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEE
Confidence 35899999999999999988899998877654321 1 1334566665554
No 399
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=56.65 E-value=94 Score=26.84 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHH----HHcCCEEEEEC
Q 027019 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVL----RALGAEIILAD 122 (229)
Q Consensus 78 GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l----~~~Ga~V~~v~ 122 (229)
+|.+++++.++.++|+.++++.|+... ....+.+ +..|+++....
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 899999999999999999999998542 3333333 45788877664
No 400
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=56.53 E-value=1.4e+02 Score=26.28 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=40.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHH-c-CCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 027019 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAA-R-GYNLIIVMPSTCSMERRIVLRALGAEI 118 (229)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~s~GN~g~alA~~a~~-~-g~~~~ivvp~~~~~~~~~~l~~~Ga~V 118 (229)
+.|.-+.|-+..-.... ..|. +.+.. .|+..+++..+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPAT-QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCccc-eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 35666666544322211 1232 33322 36666776777665554332 2 112344445433333445567899999
Q ss_pred EEECC
Q 027019 119 ILADS 123 (229)
Q Consensus 119 ~~v~~ 123 (229)
+.++.
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 99874
No 401
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.33 E-value=1.1e+02 Score=24.90 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=42.1
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCC-----------CCH-HHHHHHHHcCCEEEEECCCC-CHHHHHHH
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPST-----------CSM-ERRIVLRALGAEIILADSAL-RFEEILEK 133 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~-----------~~~-~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~ 133 (229)
++.+|+..+ |..|.++|......|..++++.... ... .....++..|.+++.+..+- +.++....
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 85 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRV 85 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 455777766 4799999988888898877765431 111 12234556677776665432 23334444
Q ss_pred HHHHHHh
Q 027019 134 GEEILKK 140 (229)
Q Consensus 134 a~~~~~~ 140 (229)
..++.++
T Consensus 86 ~~~~~~~ 92 (256)
T PRK12748 86 FYAVSER 92 (256)
T ss_pred HHHHHHh
Confidence 4445444
No 402
>PRK06924 short chain dehydrogenase; Provisional
Probab=56.12 E-value=1.1e+02 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
..+|+.++|..|+++|....+.|.+++++...
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence 35888889999999999988889987776543
No 403
>PRK07201 short chain dehydrogenase; Provisional
Probab=56.10 E-value=68 Score=30.39 Aligned_cols=74 Identities=23% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~~ 141 (229)
+.+.+|+.++|..|.+++....+.|.+++++...... ....+.++..|.++..+..+- +.++..+...+..++.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3566889999999999999988889988777654221 122344555677766554322 2333333444444443
No 404
>PRK06123 short chain dehydrogenase; Provisional
Probab=56.08 E-value=76 Score=25.51 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=34.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+..+|..|.++|..-.+.|..+++...... .......++..+.+++.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 58 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVA 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 34588899999999999888888877554432221 1122334555676665544
No 405
>PRK08177 short chain dehydrogenase; Provisional
Probab=56.00 E-value=1e+02 Score=24.52 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=27.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~ 102 (229)
+.+|+..+|..|.++|....+.|.+++++....
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 458888899999999999888999877776543
No 406
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.81 E-value=1.2e+02 Score=25.30 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=41.4
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCE-EEEECCCCCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAE-IILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~-V~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
+..+|+.++ +--|+++|....+.|.++++.-.......+++.+ +.+|.+ .+.++-+ +.++..+...+..++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVS-KPEHFKSLAESLKKDL 81 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCC-CHHHHHHHHHHHHHHc
Confidence 455777765 5689999998888999877764432112344444 344543 4445542 3444444445554443
No 407
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.78 E-value=1.3e+02 Score=25.49 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=38.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
+...+.++.+.+|. ++|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44456677775666 57899999999999999985444433 34566777778886
No 408
>PRK07326 short chain dehydrogenase; Provisional
Probab=55.51 E-value=1e+02 Score=24.48 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=27.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
...+|+.++|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 55688888999999999998888999777754
No 409
>PRK07102 short chain dehydrogenase; Provisional
Probab=55.42 E-value=1.1e+02 Score=24.63 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=35.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHH-cCCEEEEECC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRA-LGAEIILADS 123 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~-~Ga~V~~v~~ 123 (229)
+.+|+.++|.-|.+++....+.|.+++++...... ....+.++. .+.++..+..
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHEL 58 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45889999999999999999999987777554321 112223322 3456655543
No 410
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=55.42 E-value=89 Score=27.07 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=30.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
|+..+++..+..++..+. .+-.-.|+++.-.-.......+..|++++.++.+
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 666666566655554433 2222344555433334455668899999998753
No 411
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.34 E-value=1.3e+02 Score=25.40 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH-----HHHHHHHcCCeEEEEeCCC--CCHHHHHHHHHcCCEEEE-
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG-----LAFIAAARGYNLIIVMPST--CSMERRIVLRALGAEIIL- 120 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~a-----lA~~a~~~g~~~~ivvp~~--~~~~~~~~l~~~Ga~V~~- 120 (229)
....+.++...+++. +... ++..+.-|.-.. +.-.|+..|+.-+++..-. ....-.+.++.+|-+.++
T Consensus 73 ~~~~~~~~~~~r~~~---~~~p-~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 73 LADVFELVREIREKD---PTIP-IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred HHHHHHHHHHHHhcC---CCCC-EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 334455555554332 1222 677777775333 4566778888888883211 112345566788877766
Q ss_pred ECCCCCHHHHHHHHHHHHHhCCCeEee
Q 027019 121 ADSALRFEEILEKGEEILKKTPDGYLL 147 (229)
Q Consensus 121 v~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (229)
+.++.. ++ +.+.+++..+++.|+
T Consensus 149 vap~t~-~e---ri~~i~~~s~gfIY~ 171 (258)
T PRK13111 149 VAPTTT-DE---RLKKIASHASGFVYY 171 (258)
T ss_pred eCCCCC-HH---HHHHHHHhCCCcEEE
Confidence 665432 22 334444445565554
No 412
>PRK06125 short chain dehydrogenase; Provisional
Probab=55.31 E-value=78 Score=25.82 Aligned_cols=32 Identities=34% Similarity=0.308 Sum_probs=26.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
.+.+|+..+|..|+++|......|.+++++-.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 56688898899999999998899997666654
No 413
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=55.26 E-value=77 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=13.8
Q ss_pred HHHHHHhhCCCCcEEEEccCchhHH
Q 027019 164 GPEIWQDSGGKVDAFISGIGTGGTV 188 (229)
Q Consensus 164 a~Ei~~q~~~~~d~iv~pvG~Gg~~ 188 (229)
+.+++++. ++|. |+++|+|+.+
T Consensus 98 ~~~~~r~~--~~D~-IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCDG-VIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcCE-EEEeCChHHH
Confidence 44555553 5665 6778988765
No 414
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=55.25 E-value=1.8e+02 Score=27.22 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=41.9
Q ss_pred CCCCchhhHHHHHHHHHHHHc-CCCCCC-CeEEEEeCCChHHHHHHHHHH----H--cCCeEEEEeCCCCCHHHHHHHHH
Q 027019 42 EPCSSVKDRIAYSMIKDAEDK-GLITPG-KTTLIEVTSGNTGVGLAFIAA----A--RGYNLIIVMPSTCSMERRIVLRA 113 (229)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~-g~~~~g-~~~vv~~s~GN~g~alA~~a~----~--~g~~~~ivvp~~~~~~~~~~l~~ 113 (229)
.|.|....|-+...-....+. +...+. ...|+..+++..|..++..+- . -|=++.+..|.-..-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 467877766543321111221 212221 114888888888877766541 2 23344444444433333334555
Q ss_pred cCCEEEEECC
Q 027019 114 LGAEIILADS 123 (229)
Q Consensus 114 ~Ga~V~~v~~ 123 (229)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 7888887764
No 415
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=55.12 E-value=1.1e+02 Score=24.48 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=26.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
+.+|+.++|..|.++|..-.+.|.++++....
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 45888889999999999888889887777655
No 416
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.11 E-value=1.1e+02 Score=25.03 Aligned_cols=71 Identities=17% Similarity=0.027 Sum_probs=39.9
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCC-EEEEECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGA-EIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga-~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
+..+|+..+ +.-|+++|....+.|.++++.-.......+++.+. ..+. ..+.++- .+.++..+...+..++
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDV-REPGQLEAVFARIAEE 85 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCc-CCHHHHHHHHHHHHHH
Confidence 555777765 47999999999999998777644322222334332 2333 2344443 2344444444554444
No 417
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=55.11 E-value=18 Score=27.30 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=26.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~ 102 (229)
++..++|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678889999999999999999999998874
No 418
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=55.05 E-value=1e+02 Score=27.34 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=38.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCC--HHHHHHHHHHHHHhCC-CeEeeCCC-CCCccHHhHHhhHHHHHHH
Q 027019 94 NLIIVMPSTCSMERRIVLRALGAEIILADSALR--FEEILEKGEEILKKTP-DGYLLRQF-ENPANPKIHYETTGPEIWQ 169 (229)
Q Consensus 94 ~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~--~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei~~ 169 (229)
|..++...+.-...-+.++.+|-++..+-+... .....+...+..++.+ .....+.. .||..- ...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~---~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTT---TVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHH---HHHHHHHHHH
Confidence 444444444433444455556666655553222 1223344444333332 12222222 233321 1122234444
Q ss_pred hhCCCCcEEEEccCchhHH
Q 027019 170 DSGGKVDAFISGIGTGGTV 188 (229)
Q Consensus 170 q~~~~~d~iv~pvG~Gg~~ 188 (229)
+. ++|. |+++|+|+.+
T Consensus 81 ~~--~~D~-IiavGGGS~i 96 (380)
T cd08185 81 EE--GCDF-VVGLGGGSSM 96 (380)
T ss_pred Hc--CCCE-EEEeCCccHH
Confidence 43 5675 5678888754
No 419
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.97 E-value=1.3e+02 Score=25.29 Aligned_cols=54 Identities=30% Similarity=0.421 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
..+.++...++. .+|..|.+++..|+..|.++++..+ +..+.+.++.+|++-++
T Consensus 156 ~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 156 GPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 456666664554 6788999999999999999655543 33566666667776544
No 420
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=54.91 E-value=1.1e+02 Score=24.36 Aligned_cols=51 Identities=25% Similarity=0.239 Sum_probs=35.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 122 (229)
+|+.++|-.|..++....+.|.+++++...... ......++..|+++..+.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 54 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVV 54 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 688888999999999888889987666544311 123445666787765554
No 421
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=54.81 E-value=1.1e+02 Score=24.73 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=28.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+..+|..|.+++....+.|.+++++...
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 566888999999999999998899998888654
No 422
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=54.72 E-value=1e+02 Score=27.19 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=35.7
Q ss_pred EEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHH----HcCCEEEEEC
Q 027019 72 LIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLR----ALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~-GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~----~~Ga~V~~v~ 122 (229)
|+..+. .|.++++...+.++|+.++++.|+.. +...+..++ ..|.++....
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 444444 79999999999999999999999853 333333332 3577666554
No 423
>PRK06482 short chain dehydrogenase; Provisional
Probab=54.52 E-value=1.1e+02 Score=25.11 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=27.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
++.+|+..+|..|++++......|.+++++...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345899999999999999988899988877654
No 424
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=54.33 E-value=1.3e+02 Score=26.37 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=36.3
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHH----HHHcCCEEEEEC
Q 027019 72 LIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----l~~~Ga~V~~v~ 122 (229)
|+..+. .|.++|++.++..+|+.++++.|+.. +...+.. .+..|+++....
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 554454 58999999999999999999999853 2233322 345788776654
No 425
>PTZ00377 alanine aminotransferase; Provisional
Probab=54.23 E-value=1.7e+02 Score=26.67 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=33.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
.|+..+++..+..++..+-..+=.-.|++|.-.-..-...++.+|++++.++-
T Consensus 140 ~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 140 DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 47777777777777665442122234555554444556677889999988863
No 426
>PRK04148 hypothetical protein; Provisional
Probab=54.10 E-value=71 Score=24.15 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=35.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
.++++.+.| +|.++|...++.|..++.+ +.++..++.++..+.+++..+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 348888888 8877887777889877766 334456777777888777766
No 427
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=54.01 E-value=1.5e+02 Score=25.88 Aligned_cols=132 Identities=21% Similarity=0.187 Sum_probs=77.4
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC-EEEEECCCCCHHHH--HHHHHHHHHhCCCe-EeeC
Q 027019 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEEI--LEKGEEILKKTPDG-YLLR 148 (229)
Q Consensus 73 v~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga-~V~~v~~~~~~~~~--~~~a~~~~~~~~~~-~~~~ 148 (229)
++.||+|.-.-+-++ .+-+-++|.|+..-..... +..|. +|+..++.-..-+. .+...++.+++|+. ..++
T Consensus 142 i~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yva--~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvH 216 (324)
T COG0379 142 ICCTSSNAVKVVESA---LDGDKILFLPDKNLGRYVA--KQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVH 216 (324)
T ss_pred eEEecchHHHHHHhc---cCCCcEEEcCcHHHHHHHH--HHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEEC
Confidence 356667877666665 7778899999864443333 45666 89888864322221 22344556667765 4555
Q ss_pred CCCCCccHH----hHHhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC--Ccccc
Q 027019 149 QFENPANPK----IHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--SAVLN 216 (229)
Q Consensus 149 ~~~~~~~~~----~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~--~~~~~ 216 (229)
|--.+...+ .|......+..++ .+.+-+++ +|=.|+..-++...|+.+++-..+.+ |+.|.
T Consensus 217 PEC~~~Vv~~AD~vGST~~ii~~~~~--~~~~~~iv-----~TE~g~~~~l~~~~P~k~~~~~~~~~~~C~~Mk 283 (324)
T COG0379 217 PECPPEVVELADFVGSTSQIIKAVKA--SPAQKFIV-----GTERGIVHRLQKEAPDKEFIPLPTAGAVCPTMK 283 (324)
T ss_pred CCCCHHHHHhccccccHHHHHHHHhc--CCCceEEE-----EecHHHHHHHHHHCCCCeEEccCCCCCcChhhh
Confidence 532222211 1211111233333 23445555 56678899999999999999998885 55554
No 428
>PRK07856 short chain dehydrogenase; Provisional
Probab=53.88 E-value=97 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=27.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
++.+|+..+|-.|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 566899999999999999998899988777544
No 429
>PRK07831 short chain dehydrogenase; Provisional
Probab=53.79 E-value=1.2e+02 Score=24.71 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=24.4
Q ss_pred CeEEEEeCCC-hHHHHHHHHHHHcCCeEEEEe
Q 027019 69 KTTLIEVTSG-NTGVGLAFIAAARGYNLIIVM 99 (229)
Q Consensus 69 ~~~vv~~s~G-N~g~alA~~a~~~g~~~~ivv 99 (229)
.+.+|+.++| .-|.+++......|.+++++-
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISD 49 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEe
Confidence 5668887776 699999999999999865543
No 430
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=53.79 E-value=1.6e+02 Score=26.01 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=43.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~s~GN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+.|....|-+..-.. ...+. +.++...++..+++..|..++..+.. .+---.|++|.-.-..-...++.+|++++
T Consensus 68 ~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v 145 (396)
T PRK09257 68 IEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVK 145 (396)
T ss_pred CCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEE
Confidence 467777776544322 22221 13322113666667778777753332 12223556665444455667788999999
Q ss_pred EECC
Q 027019 120 LADS 123 (229)
Q Consensus 120 ~v~~ 123 (229)
.++.
T Consensus 146 ~v~~ 149 (396)
T PRK09257 146 TYPY 149 (396)
T ss_pred EEec
Confidence 8863
No 431
>PLN02342 ornithine carbamoyltransferase
Probab=53.69 E-value=1.6e+02 Score=26.07 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCC-EEEEEC
Q 027019 62 KGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGA-EIILAD 122 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~-GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga-~V~~v~ 122 (229)
.|.++ |.+ |+..+. .|.+++++.++.++|+.++++.|+.. +...++.++..|. ++....
T Consensus 189 ~G~l~-glk-va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 189 IGRLE-GTK-VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred hCCcC-CCE-EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 45443 344 444444 78999999999999999999999864 3445555666674 665543
No 432
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=53.66 E-value=1.2e+02 Score=25.95 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=41.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCH-HHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSM-ERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g-~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 140 (229)
.+.+|+..++--|.++|......| .+++++....... ...+.+...+.++..+..+ .+.++..+.+.++.+.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456888888889999998888889 8777765432111 1122333344555544322 2344444445555433
No 433
>PRK10490 sensor protein KdpD; Provisional
Probab=53.59 E-value=1.9e+02 Score=28.96 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=61.6
Q ss_pred CeEEEEeCCChHHHHH----HHHHHHcCCeEEEEe-CCC----CCH-------HHHHHHHHcCCEEEEECCCCCHHHHHH
Q 027019 69 KTTLIEVTSGNTGVGL----AFIAAARGYNLIIVM-PST----CSM-------ERRIVLRALGAEIILADSALRFEEILE 132 (229)
Q Consensus 69 ~~~vv~~s~GN~g~al----A~~a~~~g~~~~ivv-p~~----~~~-------~~~~~l~~~Ga~V~~v~~~~~~~~~~~ 132 (229)
.+.+|+-|++-++..+ +..|.+++-+.+++. -.. .+. ..++..+.+||+++.+.++ +.. +
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dva---~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AEE---K 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CHH---H
Confidence 3457888776666444 455666777755543 211 111 1244567799999888764 333 2
Q ss_pred HHHHHHHhCC-CeEeeCCCCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccC
Q 027019 133 KGEEILKKTP-DGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (229)
Q Consensus 133 ~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG 183 (229)
...+++++++ ....+.+......+ ...++...|++.. +++|..++|..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~~~~--~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASRRWW--RRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCc--cCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 3334555542 23555554333221 2347888888887 57888887643
No 434
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=53.44 E-value=44 Score=29.66 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChHHHHH-HHHHHHcCCeEEEEeCCC
Q 027019 48 KDRIAYSMIKDAEDKGLITPGKTTLIEVTS--GNTGVGL-AFIAAARGYNLIIVMPST 102 (229)
Q Consensus 48 K~R~a~~~l~~a~~~g~~~~g~~~vv~~s~--GN~g~al-A~~a~~~g~~~~ivvp~~ 102 (229)
-.+.+...+..|.++|+ ...|+..-| .+.|..+ |+...+.|++++++....
T Consensus 176 ~~gTal~vi~~A~~~gk----~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa 229 (356)
T PRK08334 176 HLGTVGAVLRVMHKDGT----LKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNM 229 (356)
T ss_pred ccchHHHHHHHHHHcCC----eEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhH
Confidence 45667777777777774 222333323 6677666 566777888888776553
No 435
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=53.38 E-value=1.3e+02 Score=26.06 Aligned_cols=54 Identities=30% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+.+.++.+.+|. .+|..|.+++.+|+.+|.+.+++... +..+...++.+|++.+
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 444566665555 67899999999999999986655432 2223344466888643
No 436
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=53.37 E-value=65 Score=29.39 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=35.7
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 73 v~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
+..|+||+-.-.-..--..+-.-+|++.+.+-..-++.++.+|++++.|+.+
T Consensus 127 iiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 127 IIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred EEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEecccc
Confidence 3344444432222223346777788888887788899999999999999864
No 437
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=53.29 E-value=1.3e+02 Score=24.76 Aligned_cols=72 Identities=21% Similarity=0.051 Sum_probs=41.4
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC-CC--CCHHHHHHHHHcCCEE--EEECCCCCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP-ST--CSMERRIVLRALGAEI--ILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp-~~--~~~~~~~~l~~~Ga~V--~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
+..+|+.++ +--|+++|....+.|.++++..- .. .....++.++..+.++ +.++- .+.++..+...+..++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~v~~~~~~~~~~~ 85 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDV-QDDAQIEETFETIKQKW 85 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCc-CCHHHHHHHHHHHHHHc
Confidence 556777764 67999999999899999876532 21 1233455555444444 33443 23444444445554443
No 438
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=53.27 E-value=92 Score=26.90 Aligned_cols=110 Identities=25% Similarity=0.231 Sum_probs=70.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (229)
+++-..+.|+-|+++|..++.+|++++.+=|..... ..+. ..+ +++ ++.++. +...+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-------~~~~--~~~----~l~-------ell~~s-Dvv~lh- 203 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-------NEEY--ERV----SLE-------ELLKTS-DIISIH- 203 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-------ccCc--eee----cHH-------HHhhcC-CEEEEe-
Confidence 358888889999999999999999988876532110 1111 111 122 233333 444443
Q ss_pred CCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHH--HHHHHHHHhcCCCcEEEEEeC
Q 027019 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKENNPDIKVYGVEP 209 (229)
Q Consensus 150 ~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~~~~~~~vigVep 209 (229)
-|.+.+ -...+..+.++++ +++.+++-++-|+.+ ..+..++++ .++. .+.+.
T Consensus 204 --~Plt~~-T~~li~~~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~--g~i~-AaLDV 257 (311)
T PRK08410 204 --APLNEK-TKNLIAYKELKLL--KDGAILINVGRGGIVNEKDLAKALDE--KDIY-AGLDV 257 (311)
T ss_pred --CCCCch-hhcccCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHc--CCeE-EEEec
Confidence 344443 3456888889998 578999999999887 677777765 2355 55444
No 439
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=53.12 E-value=94 Score=27.33 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=36.1
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHH----HHHHcCCEEEEEC
Q 027019 72 LIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCS--MERRI----VLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~----~l~~~Ga~V~~v~ 122 (229)
|+..+. -|.++++...++++|++++++.|+... ...++ ..+..|+++....
T Consensus 159 va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 159 LVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 555555 389999999999999999999998642 22232 2345677776654
No 440
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=53.09 E-value=1.2e+02 Score=26.66 Aligned_cols=56 Identities=29% Similarity=0.306 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc-CCEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL-GAEII 119 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~-Ga~V~ 119 (229)
+...+.++.+.+|. .+|-.|.+++..|+..|.+.++.+.. ++.+.+.++.+ +++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 34556677775665 56888999999999999864555433 35677777777 66544
No 441
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=53.06 E-value=1.1e+02 Score=26.52 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=32.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
|+..+++..+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++.+
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 666666666666554333 2222345556544445566778899999998753
No 442
>PRK05875 short chain dehydrogenase; Provisional
Probab=53.04 E-value=1.2e+02 Score=25.00 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|..|.+++......|.+++++...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 566899999999999999999999987776543
No 443
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=52.93 E-value=49 Score=27.13 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 63 GLITPGKTTLIEVTSGN----TGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN----~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
|.+.+|...+|++..|. .+..+++.+.+.|-+|+.|.-+..+...++.++.+|-+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 45667777777777765 55555665556788888887777666777778877753
No 444
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=52.92 E-value=1.1e+02 Score=25.78 Aligned_cols=121 Identities=15% Similarity=0.106 Sum_probs=61.6
Q ss_pred HHHHHHHH-HHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHh
Q 027019 81 GVGLAFIA-AARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKI 158 (229)
Q Consensus 81 g~alA~~a-~~~g~~~~ivvp~-~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (229)
|.++-+++ +.+|-+...-++. +.-....+.+..-|-.|.+.++. -.-+...++.+.++.++..++..++-+....+
T Consensus 72 G~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgk--p~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e 149 (253)
T COG1922 72 GIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGK--PGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEE 149 (253)
T ss_pred chhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCC--HHHHHHHHHHHHHHCCCceEEEecCCCCChhh
Confidence 46777888 6678776644444 22223344444446778888854 22333344566666665444433222222221
Q ss_pred HHhhHHHHHHHhhC-CCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 027019 159 HYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEP 209 (229)
Q Consensus 159 g~~t~a~Ei~~q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep 209 (229)
- ..|++.+. ..+|.++|+.|.--==-=|..... ..+..=.+||-.
T Consensus 150 ~-----~~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~-~~~~~v~igVGg 195 (253)
T COG1922 150 E-----EAIVERIAASGPDILLVGMGVPRQEIWIARNRQ-QLPVAVAIGVGG 195 (253)
T ss_pred H-----HHHHHHHHhcCCCEEEEeCCCchhHHHHHHhHH-hcCCceEEeccc
Confidence 1 13444442 369999999998543222333322 233334455543
No 445
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.75 E-value=1.3e+02 Score=24.92 Aligned_cols=72 Identities=25% Similarity=0.109 Sum_probs=41.4
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCC-EEEEECCCCCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGA-EIILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~--GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga-~V~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
+..+|+.++ +.-|+++|....+.|.++++.-.......+++.+ +.+|. ..+.++- .+.++..+...++.++.
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl-~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDV-TDEASIDAVFETLEKKW 86 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCC-CCHHHHHHHHHHHHHhc
Confidence 555777765 6799999999999999876653322123344444 33453 2344443 23445555555554443
No 446
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.69 E-value=1.3e+02 Score=24.87 Aligned_cols=57 Identities=30% Similarity=0.418 Sum_probs=41.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 61 ~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+.+.+.++...+|...+|..|.+++..++..|.++++..+ + .+.+.++.+|++-+.-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPIIY 194 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEEe
Confidence 4456677777677666789999999999999999766643 2 4566667788755443
No 447
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.60 E-value=72 Score=29.16 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=38.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~ 120 (229)
.|+..++|-.|.+.|..+++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 599999999999999999999999998864321 1 1245667888988765
No 448
>PLN02928 oxidoreductase family protein
Probab=52.60 E-value=1e+02 Score=27.19 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=66.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH--HHcC-CEEEEECCCCCHHHHHHHHHHHHHhCCCeEe
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL--RALG-AEIILADSALRFEEILEKGEEILKKTPDGYL 146 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l--~~~G-a~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (229)
+++...+.|+-|+++|..++.+|++++++-+....... ..+ ..-. ..+ +.....+ ....++.++. +...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~-~~~~~~~~~~~~~--~~~~~~~----~~L~ell~~a-DiVv 231 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE-DGLLIPNGDVDDL--VDEKGGH----EDIYEFAGEA-DIVV 231 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh-hhhcccccccccc--ccccCcc----cCHHHHHhhC-CEEE
Confidence 35888899999999999999999998888554221111 100 0000 000 0000001 1122333443 5444
Q ss_pred eCCCCCCccHHhHHhhHHHHHHHhhCCCCcEEEEccCchhHH--HHHHHHHHh
Q 027019 147 LRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (229)
Q Consensus 147 ~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~ 197 (229)
+. -|.+.+ -...+..|.++++ +++.+++-+|-|+.+ ..+..+++.
T Consensus 232 l~---lPlt~~-T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 232 LC---CTLTKE-TAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred EC---CCCChH-hhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 43 234443 2345677888888 567899999999887 567777764
No 449
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=52.57 E-value=46 Score=24.03 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=32.2
Q ss_pred hHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027019 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (229)
Q Consensus 162 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~ 212 (229)
..+.++.+++ +...||+..-+|.++-- +....|++.|+++-|...
T Consensus 6 ~aa~~~A~~~--~ak~Ivv~T~sG~ta~~----isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 6 RAAVELAEDL--NAKAIVVFTESGRTARL----ISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHH--TESEEEEE-SSSHHHHH----HHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHHhc--CCCEEEEECCCchHHHH----HHhhCCCCeEEEEcCcHH
Confidence 3456777787 47789999999988544 444568899999998753
No 450
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=52.47 E-value=1.3e+02 Score=28.43 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=30.5
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCCCCHH----HHHHHHHcCCEE
Q 027019 70 TTLIEVTSGNTG---VGLAFIAAARGYNLIIVMPSTCSME----RRIVLRALGAEI 118 (229)
Q Consensus 70 ~~vv~~s~GN~g---~alA~~a~~~g~~~~ivvp~~~~~~----~~~~l~~~Ga~V 118 (229)
+.+|.++.||.| .++|......|+++.|+.|...... ..+.++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 446666666554 4555555667999999997643322 345567777654
No 451
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=52.44 E-value=1.5e+02 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
..|+..++|-.|++.|+..++.|.+++||=.
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~ 461 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEA 461 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 3599999999999999999999999999953
No 452
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.27 E-value=33 Score=32.86 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S---------MERRIVLRALGAEIIL 120 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~l~~~Ga~V~~ 120 (229)
..|+..++|-.|++.|+..++.|.+++||=.... + ...++.++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 3599999999999999999999999888843221 1 1235667788988754
No 453
>PRK12827 short chain dehydrogenase; Provisional
Probab=52.19 E-value=1.2e+02 Score=24.20 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=37.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHH----HHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMER----RIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~-~~~~----~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|-.|.++|......|.+++++..... ...+ ...++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAF 66 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEc
Confidence 55689999999999999998889998777654221 2222 2344556777766554
No 454
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=52.19 E-value=1.2e+02 Score=26.14 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=23.0
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 027019 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213 (229)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~~~~ 213 (229)
.+|.|++..|-| |+.-++.++......+ +|+-|.|+.
T Consensus 58 ~~D~via~GGDG-Tv~evingl~~~~~~~--LgilP~GT~ 94 (301)
T COG1597 58 GYDTVIAAGGDG-TVNEVANGLAGTDDPP--LGILPGGTA 94 (301)
T ss_pred CCCEEEEecCcc-hHHHHHHHHhcCCCCc--eEEecCCch
Confidence 467766655554 5666777776544333 777777754
No 455
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.10 E-value=1.2e+02 Score=24.10 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=37.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|.+++......|..++++....... .....++..+.++..+..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 4568899999999999999989999877766554321 123344455666655543
No 456
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=51.95 E-value=27 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.|+..++|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 3889999999999999999999999999654
No 457
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=51.89 E-value=1.4e+02 Score=25.84 Aligned_cols=53 Identities=26% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 64 ~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
.+.++...+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++-+
T Consensus 184 ~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~~v 236 (367)
T cd08263 184 DVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGATHT 236 (367)
T ss_pred cCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCceE
Confidence 34556665666 57899999999999999984444432 3455566667777433
No 458
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=51.87 E-value=1.1e+02 Score=23.60 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=37.3
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCeEEEEe-----------CCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH
Q 027019 72 LIEVTS--GNTGVGLAFIAAARGYNLIIVM-----------PST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEI 137 (229)
Q Consensus 72 vv~~s~--GN~g~alA~~a~~~g~~~~ivv-----------p~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~ 137 (229)
++..++ ||..-+++-+....++|+++++ +.. ........++..+-....+....+. ..+++|.+.
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~ 140 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA-KLIEKAISD 140 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHHHH
Confidence 555555 7777676665558899999999 331 1111222334444444444432344 556666655
Q ss_pred HHhC
Q 027019 138 LKKT 141 (229)
Q Consensus 138 ~~~~ 141 (229)
+.+.
T Consensus 141 a~~~ 144 (157)
T TIGR03845 141 AYEN 144 (157)
T ss_pred HHhC
Confidence 5444
No 459
>PRK06180 short chain dehydrogenase; Provisional
Probab=51.79 E-value=1.4e+02 Score=24.73 Aligned_cols=33 Identities=36% Similarity=0.271 Sum_probs=27.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
+..+|+..+|..|.+++....+.|.+++++...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 456899999999999999999999997777553
No 460
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=51.78 E-value=65 Score=28.64 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=12.9
Q ss_pred HHHHHhhCCCCcEEEEccCchhHH
Q 027019 165 PEIWQDSGGKVDAFISGIGTGGTV 188 (229)
Q Consensus 165 ~Ei~~q~~~~~d~iv~pvG~Gg~~ 188 (229)
.+++++. ++| +|+++|+|+.+
T Consensus 80 ~~~~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 80 VEVFKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHHhc--CCC-EEEEeCChHHH
Confidence 3444443 567 47788988765
No 461
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=51.65 E-value=1.3e+02 Score=24.58 Aligned_cols=51 Identities=33% Similarity=0.465 Sum_probs=36.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 027019 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (229)
Q Consensus 63 g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (229)
+.+.++.+.+|...+|..|.+++..++..|.+++++.+.. +.+.++.+|++
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~~ 190 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGAD 190 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCCC
Confidence 4466677766666679999999999999999977665432 45555667753
No 462
>PRK06354 pyruvate kinase; Provisional
Probab=51.63 E-value=1.4e+02 Score=28.47 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeC-CChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEECCCCC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVT-SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSALR 126 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s-~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~~~ 126 (229)
.-.+...+.-|...+ .+.+++.| +|++++.+|. .+-..+.+++.|.. ...++| -.+|..-+.++...+
T Consensus 363 ~~ia~aa~~~a~~~~-----a~~Iv~~T~sG~ta~~vsk--~Rp~~pI~a~t~~~---~~~r~l~l~~GV~p~~~~~~~~ 432 (590)
T PRK06354 363 NAISQAVSHIALQLD-----AAAIVTLTKSGATARNVSK--YRPKTPILAVTPNE---SVARRLQLVWGVTPLLVLDAPS 432 (590)
T ss_pred HHHHHHHHHHHhhcC-----CCEEEEECCChHHHHHHHh--hCCCCCEEEECCCH---HHHHHhhcccCcEEEEeCCCCC
Confidence 334445555555544 44466666 6888887765 35567777777653 223333 346888887775556
Q ss_pred HHHHHHHHHHHHHhC
Q 027019 127 FEEILEKGEEILKKT 141 (229)
Q Consensus 127 ~~~~~~~a~~~~~~~ 141 (229)
.++..+.+.+.+++.
T Consensus 433 ~~~~~~~~~~~~~~~ 447 (590)
T PRK06354 433 TDETFDAAINVAQES 447 (590)
T ss_pred HHHHHHHHHHHHHHc
Confidence 677777887777654
No 463
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=51.62 E-value=77 Score=29.00 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=39.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S---------MERRIVLRALGAEIIL 120 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~l~~~Ga~V~~ 120 (229)
..|+..++|-.|.+.|+.+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 4599999999999999999999999888843321 1 1345677889988764
No 464
>PRK07324 transaminase; Validated
Probab=51.61 E-value=1e+02 Score=27.04 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=30.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 123 (229)
|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++.
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 666666667766665543 222233444443333445667889999998874
No 465
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.50 E-value=1.4e+02 Score=24.73 Aligned_cols=71 Identities=18% Similarity=0.063 Sum_probs=38.4
Q ss_pred CeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHh
Q 027019 69 KTTLIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG--AEIILADSALRFEEILEKGEEILKK 140 (229)
Q Consensus 69 ~~~vv~~s~G--N~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~G--a~V~~v~~~~~~~~~~~~a~~~~~~ 140 (229)
++.+|+..++ .-|+++|....+.|.++++.-.........+.+.... +..+.++-+ +.++..+...+..++
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVA-EDASIDAMFAELGKV 81 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCC-CHHHHHHHHHHHHhh
Confidence 5557777664 6888999998889988765543321123444554332 233444432 333344344444443
No 466
>PRK07074 short chain dehydrogenase; Provisional
Probab=51.43 E-value=1.3e+02 Score=24.36 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp 100 (229)
.+.+|+..+|..|.+++......|.+++++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888899999999998889998777654
No 467
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.42 E-value=66 Score=23.36 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=30.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 119 (229)
+.++.+..-.+...+--.|..+|++.+++.|...+.+-++.++.+|.+++
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 34555565566666666777778888888888777777777777777765
No 468
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=51.32 E-value=1.4e+02 Score=26.11 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEe--CCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 027019 78 GNTGVGLAFIAAARGYNLIIVM--PSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (229)
Q Consensus 78 GN~g~alA~~a~~~g~~~~ivv--p~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~ 142 (229)
|-.--++-.-=..++=+-++++ |...++.-..+++.+|..|....++++++-|.+.+..+.+++|
T Consensus 61 g~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 61 GIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred ccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 4444444444445555556665 3355677788899999999999998888777777777765543
No 469
>PRK09206 pyruvate kinase; Provisional
Probab=51.30 E-value=1.5e+02 Score=27.36 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEECCCCC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSALR 126 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~-GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~~~ 126 (229)
+-.+...+.-|.+.+ .+.|++.|. |++++.+|.+ +-..+.+++.|.. ...+.| -.+|..-+.++...+
T Consensus 356 ~~ia~sa~~~A~~l~-----a~aIv~~T~sG~tA~~is~~--RP~~pIia~t~~~---~~~r~l~l~~GV~p~~~~~~~~ 425 (470)
T PRK09206 356 EAVCRGAVETAEKLD-----APLIVVATQGGKSARSVRKY--FPDATILALTTNE---KTARQLVLSKGVVPQLVKEIAS 425 (470)
T ss_pred HHHHHHHHHHHhcCC-----CCEEEEECCCcHHHHHHHhh--CCCCCEEEECCCH---HHHHHhhcccCcEEEEeCCCCC
Confidence 344444444444443 333444443 6666665542 3345555555542 122222 234666555543333
Q ss_pred HHHHHHHHHHHHHh
Q 027019 127 FEEILEKGEEILKK 140 (229)
Q Consensus 127 ~~~~~~~a~~~~~~ 140 (229)
.++....+.+.+++
T Consensus 426 ~~~~~~~a~~~~~~ 439 (470)
T PRK09206 426 TDDFYRLGKELALQ 439 (470)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 470
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=51.30 E-value=1.4e+02 Score=24.64 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 120 (229)
...+.++...+|...+|..|.+++..++..|.+++++... ..+.+.++.+|++...
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHVI 189 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCceee
Confidence 3455666676666666999999999999999986555433 3455555667765443
No 471
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=51.23 E-value=1.5e+02 Score=24.97 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=39.3
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 62 ~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
...+.++.+.++. ++|..|.+++..|+..|.+++++.+ +..+.+.++.+|++-+...
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~ 216 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNS 216 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcC
Confidence 3446666665665 5688999999999999998554433 3456677777887554443
No 472
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=51.15 E-value=1.1e+02 Score=26.82 Aligned_cols=52 Identities=10% Similarity=-0.081 Sum_probs=29.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
|+..+++..+..+...+- .+=.-.|+++.-.-..-...++.+|++++.++.+
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 666666566665544332 2222344455433344556678899999988753
No 473
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=51.13 E-value=83 Score=28.10 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=29.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~ 103 (229)
+|-.-++|..|+-++.+|+.+|++++++-|...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 366788999999999999999999999998743
No 474
>PTZ00066 pyruvate kinase; Provisional
Probab=51.08 E-value=1.6e+02 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=13.8
Q ss_pred EEEEeC-CChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 71 TLIEVT-SGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 71 ~vv~~s-~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.|++.| +|.+++.+|.+ +-..+.+.+.|.
T Consensus 414 aIv~~T~SG~TAr~iSk~--RP~~pIia~t~~ 443 (513)
T PTZ00066 414 LIIALTETGNTARLISKY--RPSCTILALSAS 443 (513)
T ss_pred EEEEECCCcHHHHHHHhh--CCCCCEEEECCC
Confidence 344444 46666555442 333455555443
No 475
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=51.06 E-value=1.2e+02 Score=25.85 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=26.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|--|.+++....+.|.+++++...
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 566889888999999999888889887776543
No 476
>PRK06836 aspartate aminotransferase; Provisional
Probab=50.70 E-value=1.8e+02 Score=25.69 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=30.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.+
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 666666677766554332 2222345555533333455677899999998753
No 477
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=50.63 E-value=55 Score=29.00 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=35.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 124 (229)
.++..++|..+..++..+...+=.-.|++|...-......+...|+++++++.+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 466667777766655544322223456677766666677777889999999854
No 478
>PRK13984 putative oxidoreductase; Provisional
Probab=50.63 E-value=76 Score=30.01 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=37.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~ 120 (229)
.++..++|-.|.+.|...++.|++++++=.... + ....+.++.+|.+++.
T Consensus 285 ~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 477777999999999999999999998843321 1 2345677889988754
No 479
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=50.54 E-value=1.6e+02 Score=25.08 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcC-CEEEEEC
Q 027019 79 NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG-AEIILAD 122 (229)
Q Consensus 79 N~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~G-a~V~~v~ 122 (229)
.+...+..+|.++|+..+.+++.+++..+++.+.... .-|..+.
T Consensus 134 ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 134 EESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 3444555555566666666665555555555554443 4444443
No 480
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=50.52 E-value=87 Score=22.06 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=29.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 122 (229)
++..+.|+.|+.++..-+..+.+++++-.. +.+.+.++..|.+++.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d---~~~~~~~~~~~~~~i~gd 48 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD---PERVEELREEGVEVIYGD 48 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS---HHHHHHHHHTTSEEEES-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC---cHHHHHHHhccccccccc
Confidence 355666788888888777766566666332 345666666666655544
No 481
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=50.44 E-value=1e+02 Score=26.72 Aligned_cols=37 Identities=27% Similarity=0.183 Sum_probs=28.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC
Q 027019 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS 104 (229)
Q Consensus 68 g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~ 104 (229)
|.+..+..-.+|.++++...+.++|+.++++.|+...
T Consensus 153 g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 153 QKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3443333344899999999999999999999998754
No 482
>PRK07024 short chain dehydrogenase; Provisional
Probab=50.39 E-value=1e+02 Score=25.07 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=27.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
.+.+|+.++|--|.+++....+.|.+++++...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456889999999999999998899987776543
No 483
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.33 E-value=1.4e+02 Score=24.48 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=38.9
Q ss_pred CeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEE-EEECCCCCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEI-ILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~G--N~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga~V-~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
+..+|+..++ --|+++|....+.|.++++.-........++.+. ..|... +.++-. +.++..+...+..++.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVT-NPKSISNLFDDIKEKW 84 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCC-CHHHHHHHHHHHHHHc
Confidence 4557777776 4688888888888988766533211123344443 335443 344532 3444444444444443
No 484
>PRK07060 short chain dehydrogenase; Provisional
Probab=50.20 E-value=1e+02 Score=24.60 Aligned_cols=52 Identities=23% Similarity=0.221 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEECC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADS 123 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~ 123 (229)
.+.+|+..+|..|..++......|.+++++... ..+.+.+ +..+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 566888888999999999999999987666543 2233333 344677777664
No 485
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=50.14 E-value=1.8e+02 Score=25.53 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=50.7
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
.|....|-+..-... ...|. +.+.. .|+..+++..+..++..+-. -|= .|+++.-.-..-...++..|++++.+
T Consensus 68 ~G~~~lr~aia~~~~-~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v 143 (388)
T PRK07366 68 HGTLDFREAAAQWYE-QRFGLAVDPET-EVLPLIGSQEGTAHLPLAVLNPGD--FALLLDPGYPSHAGGVYLAGGQIYPM 143 (388)
T ss_pred CCCHHHHHHHHHHHH-HhhCCcCCCcC-eEEECCCcHHHHHHHHHHhCCCCC--EEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 566566654332211 12232 33332 26666666777665544321 232 33444322233345567799999988
Q ss_pred CCC--CCHHHHHHHHHHHHHhCCCeEeeCCCCCCcc
Q 027019 122 DSA--LRFEEILEKGEEILKKTPDGYLLRQFENPAN 155 (229)
Q Consensus 122 ~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (229)
+.+ ..+....+...+........+|+...+||..
T Consensus 144 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 144 PLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred ECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 642 1221111111111122235677766566654
No 486
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=50.02 E-value=2e+02 Score=25.99 Aligned_cols=130 Identities=20% Similarity=0.210 Sum_probs=68.9
Q ss_pred CeEEEEeCCC-hHHHHHHHHHHHcCCeEEEEeCC-CCC----HHHHHHHHHcCCE-EEEECCCCCHHHHHHHHHHHHHhC
Q 027019 69 KTTLIEVTSG-NTGVGLAFIAAARGYNLIIVMPS-TCS----MERRIVLRALGAE-IILADSALRFEEILEKGEEILKKT 141 (229)
Q Consensus 69 ~~~vv~~s~G-N~g~alA~~a~~~g~~~~ivvp~-~~~----~~~~~~l~~~Ga~-V~~v~~~~~~~~~~~~a~~~~~~~ 141 (229)
++.++..|+| .+..++-|.-.+.|..++.|+-+ .-+ ..-.+....+||. .+.++....|. .+.+....+
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~--~~yi~~~i~-- 80 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFV--EDYIFPAIK-- 80 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHH--HHHHHHHHH--
Confidence 4445667775 68888899999999998888743 221 1223344568887 55555321111 112222212
Q ss_pred CCeEeeCCCCCC---ccHHhHHhhHHHHHHHhhCCCCcEEEE-ccCchhHHHHHHHHHHhcCCCcEEEE
Q 027019 142 PDGYLLRQFENP---ANPKIHYETTGPEIWQDSGGKVDAFIS-GIGTGGTVTGAGRFLKENNPDIKVYG 206 (229)
Q Consensus 142 ~~~~~~~~~~~~---~~~~~g~~t~a~Ei~~q~~~~~d~iv~-pvG~Gg~~aGi~~~~~~~~~~~~vig 206 (229)
.+..|-..|-.. ..+. -.....|+.++. ..++|.- ++|-|-=..=.-.+++..+|+.+||+
T Consensus 81 ana~Yeg~YpL~TalaRPL--Iak~lVe~A~k~--ga~avaHGcTGKGNDQvRFe~~~~al~p~lkiiA 145 (403)
T COG0137 81 ANALYEGVYPLGTALARPL--IAKKLVEAAKKE--GADAVAHGCTGKGNDQVRFELAILALNPDLKIIA 145 (403)
T ss_pred hhceeeccccccchhhHHH--HHHHHHHHHHHc--CCCEEEecCCCCCCceeeeeeehhhhCCCcEEEe
Confidence 134444433111 1221 233445777665 3455553 24445444333445667788888876
No 487
>PLN02477 glutamate dehydrogenase
Probab=49.86 E-value=89 Score=28.33 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
-|+..+.+..+.+.-.......+|+.-+.||-|..+|......|.+++.+...
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 36777777776654322333345888889999999999999999998876543
No 488
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=49.61 E-value=35 Score=26.92 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~ 102 (229)
|...++|..|+++|..+...|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 5667789999999999999999999997653
No 489
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=49.58 E-value=80 Score=29.08 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=38.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 027019 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (229)
Q Consensus 70 ~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~ 120 (229)
..++..++|-.|.+.|...++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3588899999999999999999999999853321 1 1234567788988764
No 490
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=49.53 E-value=99 Score=27.15 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=36.6
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHH----HHHcCCEEEEEC
Q 027019 72 LIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCS--MERRIV----LRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~G--N~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~----l~~~Ga~V~~v~ 122 (229)
|+..+.+ |.+++++..+..+|++++++.|+... ...++. .+..|.++...+
T Consensus 158 va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 158 LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5555554 89999999999999999999998642 233322 345788876665
No 491
>PRK12746 short chain dehydrogenase; Provisional
Probab=49.50 E-value=1.4e+02 Score=24.10 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=35.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEEC
Q 027019 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILAD 122 (229)
Q Consensus 69 ~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~l~~~Ga~V~~v~ 122 (229)
.+.+|+.++|-.|.++|....+.|.+++++....... .....+...+.++..+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIE 62 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 5668999999999999999888898877764333211 12233444455665544
No 492
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=49.49 E-value=58 Score=28.67 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=36.3
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCC--HHHH----HHHHHcCCEEEEEC
Q 027019 72 LIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCS--MERR----IVLRALGAEIILAD 122 (229)
Q Consensus 72 vv~~s~G--N~g~alA~~a~~~g~~~~ivvp~~~~--~~~~----~~l~~~Ga~V~~v~ 122 (229)
|...+.+ |.++++..+++.+|+.++++.|+... ...+ +..+..|+++....
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 159 LAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 5555553 78999999999999999999998542 2222 23445788877665
No 493
>PRK08912 hypothetical protein; Provisional
Probab=49.30 E-value=1.8e+02 Score=25.43 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=42.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Q 027019 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (229)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~s~GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 121 (229)
+.|....|.+...... ...|. +.+.. .|+..+++..+..++..+.. +-.-.|+++...-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPET-EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCcc-cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 3566666654443221 11231 23321 36767777887765555432 222345555544444556678899999888
Q ss_pred CC
Q 027019 122 DS 123 (229)
Q Consensus 122 ~~ 123 (229)
+.
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 494
>PRK07041 short chain dehydrogenase; Provisional
Probab=49.29 E-value=77 Score=25.21 Aligned_cols=30 Identities=33% Similarity=0.305 Sum_probs=24.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 027019 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (229)
Q Consensus 72 vv~~s~GN~g~alA~~a~~~g~~~~ivvp~ 101 (229)
+|+..+|..|.+++....+.|.+++++...
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRS 30 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 467788899999999988899998777654
No 495
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=49.28 E-value=99 Score=28.06 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=38.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCC---C--CHHHHHHHHHcCCEEEEE
Q 027019 71 TLIEVTSGNTGVGLAFIAAARGY-NLIIVMPST---C--SMERRIVLRALGAEIILA 121 (229)
Q Consensus 71 ~vv~~s~GN~g~alA~~a~~~g~-~~~ivvp~~---~--~~~~~~~l~~~Ga~V~~v 121 (229)
.++..++||.|.-+|..+.++|. +++++.... . .....+.++..|.+++.-
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 48888899999999999999998 677776532 1 344566677888887653
No 496
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=49.18 E-value=1.8e+02 Score=25.86 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=10.4
Q ss_pred CCCcEEEEccCchhHH
Q 027019 173 GKVDAFISGIGTGGTV 188 (229)
Q Consensus 173 ~~~d~iv~pvG~Gg~~ 188 (229)
.++|. |+++|+|+.+
T Consensus 78 ~~~D~-IIaiGGGS~i 92 (386)
T cd08191 78 AGPDV-IIGLGGGSCI 92 (386)
T ss_pred cCCCE-EEEeCCchHH
Confidence 35676 6778988755
No 497
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=49.11 E-value=1.5e+02 Score=24.45 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeeCCCCCCccHHh
Q 027019 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL---GAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKI 158 (229)
Q Consensus 82 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~---Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (229)
-+.|.+.+++|+++.++-++..+...+..+..+ |.+|....+...-+ ...+.+.+..-....+..|.+-..
T Consensus 87 ~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~---~l~~~L~~~G~~v~~~~~Y~~~~~--- 160 (248)
T COG1587 87 EKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGRE---VLEEKLEERGAEVREVEVYRTEPP--- 160 (248)
T ss_pred HHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchH---HHHHHHHhCCCEEEEEeeeeecCC---
Confidence 467888899999998886666667777777777 67887766543221 122333332112333433432221
Q ss_pred HHhhHHHHHHHhhCCCCcEEEEccCchhHHHHHHHHHHhcCC----CcEEEEEeCCCCccc
Q 027019 159 HYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP----DIKVYGVEPSESAVL 215 (229)
Q Consensus 159 g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~----~~~vigVep~~~~~~ 215 (229)
.+. ...++.......+|+|+...+ .++..+...+..... +.+++.+-|.-+..+
T Consensus 161 ~~~-~~~~~~~~~~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l 218 (248)
T COG1587 161 PLD-EATLIELLKLGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPRTAETL 218 (248)
T ss_pred Ccc-HHHHHHHHHhCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHHHHHHH
Confidence 122 111111111257898887544 456667666665554 367888877655443
No 498
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.75 E-value=1.5e+02 Score=24.28 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=24.0
Q ss_pred CeEEEEeC--CChHHHHHHHHHHHcCCeEEEEe
Q 027019 69 KTTLIEVT--SGNTGVGLAFIAAARGYNLIIVM 99 (229)
Q Consensus 69 ~~~vv~~s--~GN~g~alA~~a~~~g~~~~ivv 99 (229)
+..+|+.+ ++--|.++|....+.|.++++.-
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 55677776 67888899988888899876654
No 499
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=48.69 E-value=1.1e+02 Score=26.70 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=18.6
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 027019 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (229)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigVep~ 210 (229)
++| +|+++|+|+.+ =+++++.... .+++|.|-..
T Consensus 77 ~~d-~IIavGGGs~~-D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGKTL-DTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcHHH-HHHHHHHHHc-CCCEEEeCCc
Confidence 456 46678877643 4455443322 3456666554
No 500
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=48.56 E-value=73 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCH---HH--HHHHHHcCCEEEEEC
Q 027019 83 GLAFIAAARGYNLIIVMPSTCSM---ER--RIVLRALGAEIILAD 122 (229)
Q Consensus 83 alA~~a~~~g~~~~ivvp~~~~~---~~--~~~l~~~Ga~V~~v~ 122 (229)
++-..|+..|.+..+++.++.+. .+ ...|...|-.+..+.
T Consensus 159 ~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~ 203 (329)
T PRK06371 159 APIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIA 203 (329)
T ss_pred HHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEc
Confidence 33344666677777777665542 12 356677777777665
Done!