Query 027020
Match_columns 229
No_of_seqs 223 out of 1396
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 85.1 0.63 2.2E-05 33.1 3.1 28 144-171 18-47 (84)
2 1x4u_A Zinc finger, FYVE domai 81.8 1.1 3.7E-05 31.8 3.1 28 144-171 11-40 (84)
3 2yw8_A RUN and FYVE domain-con 80.4 0.92 3.2E-05 32.0 2.3 28 144-171 16-45 (82)
4 3j21_g 50S ribosomal protein L 77.6 0.48 1.6E-05 31.0 0.1 29 144-172 11-39 (51)
5 1dvp_A HRS, hepatocyte growth 73.0 2.6 8.8E-05 34.9 3.4 25 147-171 161-187 (220)
6 3zyq_A Hepatocyte growth facto 72.9 1.7 5.6E-05 36.5 2.2 25 147-171 164-190 (226)
7 1wfl_A Zinc finger protein 216 71.6 5.9 0.0002 27.7 4.4 41 146-187 24-69 (74)
8 1vfy_A Phosphatidylinositol-3- 71.2 2.3 7.8E-05 29.3 2.3 24 148-171 12-37 (73)
9 2ayj_A 50S ribosomal protein L 70.9 1.6 5.4E-05 29.1 1.3 28 145-172 17-44 (56)
10 1joc_A EEA1, early endosomal a 70.8 1.7 5.7E-05 33.3 1.6 25 147-171 69-95 (125)
11 3t7l_A Zinc finger FYVE domain 70.7 2 6.8E-05 30.9 1.9 25 147-171 20-46 (90)
12 1wfk_A Zinc finger, FYVE domai 68.6 2.8 9.4E-05 30.1 2.3 25 147-171 9-35 (88)
13 1y02_A CARP2, FYVE-ring finger 66.2 2.2 7.6E-05 32.6 1.5 23 148-170 20-44 (120)
14 2dkt_A Ring finger and CHY zin 44.7 5.4 0.00019 31.4 0.4 40 147-186 83-126 (143)
15 1wil_A KIAA1045 protein; ring 43.0 23 0.00078 25.5 3.4 26 146-171 14-39 (89)
16 1wg2_A Zinc finger (AN1-like) 41.3 41 0.0014 22.7 4.4 42 146-188 14-60 (64)
17 2cr8_A MDM4 protein; ZF-ranbp 40.9 10 0.00035 24.6 1.2 22 148-169 12-33 (53)
18 1wfh_A Zinc finger (AN1-like) 39.4 50 0.0017 22.3 4.5 42 146-188 14-60 (64)
19 3mpx_A FYVE, rhogef and PH dom 39.2 6.3 0.00022 35.3 0.0 25 147-171 375-401 (434)
20 2c6a_A Ubiquitin-protein ligas 36.6 12 0.00042 23.7 1.0 22 148-169 14-35 (46)
21 2vrw_B P95VAV, VAV1, proto-onc 35.8 17 0.00059 32.2 2.3 28 146-173 356-386 (406)
22 2dkt_A Ring finger and CHY zin 33.3 12 0.00041 29.4 0.7 31 149-179 103-136 (143)
23 3gj3_B Nuclear pore complex pr 28.2 23 0.0008 20.7 1.2 22 148-169 8-29 (33)
24 3u5e_m 60S ribosomal protein L 23.9 19 0.00065 26.9 0.3 25 146-170 92-118 (128)
25 2jne_A Hypothetical protein YF 23.0 26 0.0009 25.8 0.9 25 148-172 33-59 (101)
26 2jrp_A Putative cytoplasmic pr 22.2 30 0.001 24.5 1.1 19 150-169 21-39 (81)
27 1x4w_A Hypothetical protein FL 22.0 62 0.0021 22.0 2.6 41 147-188 15-63 (67)
28 3arc_I Photosystem II reaction 20.5 1.5E+02 0.0051 17.8 3.8 13 123-135 24-36 (38)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=85.11 E-value=0.63 Score=33.07 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCC--CCCCcccccccCccc
Q 027020 144 SELGVDPDNENSL--SRKRVRYCKICKAHV 171 (229)
Q Consensus 144 ~~~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (229)
+.+...|..|... --.|-|||+.||+-+
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEE
Confidence 4455678888752 346789999998754
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.79 E-value=1.1 Score=31.80 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCC--CCCCCcccccccCccc
Q 027020 144 SELGVDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 144 ~~~~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
+.+...|..|.. -.-.|-|||+.||+-+
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 334567888875 2356889999998743
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.38 E-value=0.92 Score=32.05 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCC--CCCCCcccccccCccc
Q 027020 144 SELGVDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 144 ~~~~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
+.+...|..|.. ---.|-|||+.||+-+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEE
Confidence 344567888875 2346789999998754
No 4
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.60 E-value=0.48 Score=31.02 Aligned_cols=29 Identities=7% Similarity=-0.114 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCcccc
Q 027020 144 SELGVDPDNENSLSRKRVRYCKICKAHVE 172 (229)
Q Consensus 144 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 172 (229)
......|..|....|.++..|+.||.--+
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCccc
Confidence 34557899999999999999999987543
No 5
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.98 E-value=2.6 Score=34.94 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.4
Q ss_pred CCCCCCCCCC--CCCCcccccccCccc
Q 027020 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (229)
...|..|... --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 4678888742 346789999998754
No 6
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.92 E-value=1.7 Score=36.47 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCCCCCCCC--CCCCCcccccccCccc
Q 027020 147 GVDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
...|..|.. -.-.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 457888874 2245779999998854
No 7
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=71.58 E-value=5.9 Score=27.75 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCCcccccccCc--cc---cccccccccccccccc
Q 027020 146 LGVDPDNENSLSRKRVRYCKICKA--HV---EGFDHHCPAFGNCIGQ 187 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV---~r~DHHCpWl~nCIG~ 187 (229)
..+.|..|+.....-...|+ |+. |- .--||.|++-..=.|+
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTSS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhch
Confidence 35679999886444458888 865 22 2339999987665554
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=71.24 E-value=2.3 Score=29.27 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.4
Q ss_pred CCCCCCCCC--CCCCcccccccCccc
Q 027020 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (229)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (229)
..|..|... .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 458888752 346789999998754
No 9
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=70.93 E-value=1.6 Score=29.06 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCCCcccccccCcccc
Q 027020 145 ELGVDPDNENSLSRKRVRYCKICKAHVE 172 (229)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 172 (229)
....+|..|..+-|+|+..|+.||.--+
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred hchhhhccccCcCCcccccccCCCCCCC
Confidence 3456899999999999999999986543
No 10
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.75 E-value=1.7 Score=33.28 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.2
Q ss_pred CCCCCCCCCC--CCCCcccccccCccc
Q 027020 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (229)
...|..|... -..|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3568888752 346889999998754
No 11
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=70.66 E-value=2 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=17.7
Q ss_pred CCCCCCCCC--CCCCCcccccccCccc
Q 027020 147 GVDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
...|..|.. .--.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 456888874 2345789999998754
No 12
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=68.56 E-value=2.8 Score=30.07 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=18.1
Q ss_pred CCCCCCCCCC--CCCCcccccccCccc
Q 027020 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (229)
...|..|... .-.|-|||+.||+-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 3568888752 346889999998743
No 13
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=66.22 E-value=2.2 Score=32.56 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.4
Q ss_pred CCCCCCCC--CCCCCcccccccCcc
Q 027020 148 VDPDNENS--LSRKRVRYCKICKAH 170 (229)
Q Consensus 148 ~~C~~C~~--~kP~Rs~HC~~C~~C 170 (229)
..|..|.. .-..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56888875 235688999999874
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=44.70 E-value=5.4 Score=31.38 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCC-CcccccccCccccc---ccccccccccccc
Q 027020 147 GVDPDNENSLSRK-RVRYCKICKAHVEG---FDHHCPAFGNCIG 186 (229)
Q Consensus 147 ~~~C~~C~~~kP~-Rs~HC~~C~~CV~r---~DHHCpWl~nCIG 186 (229)
.-+|.+|+.+.+. ...||..||-|..+ -=-||.--|.|+.
T Consensus 83 ~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 83 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4478888877544 35888888888765 2246777777754
No 15
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=43.02 E-value=23 Score=25.48 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCCCcccccccCccc
Q 027020 146 LGVDPDNENSLSRKRVRYCKICKAHV 171 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV 171 (229)
.+..|..|+.+...--.-||.|+|+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 35689999999977778899999974
No 16
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.34 E-value=41 Score=22.72 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCcccccccCc--c---cccccccccccccccccc
Q 027020 146 LGVDPDNENSLSRKRVRYCKICKA--H---VEGFDHHCPAFGNCIGQN 188 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--C---V~r~DHHCpWl~nCIG~~ 188 (229)
..+.|..|+..-..-.-.| .|+. | -.--||.|++-..=.|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~gr~ 60 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVGSG 60 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSCCC
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHhHH
Confidence 3467999998654446778 5765 2 233499999877666554
No 17
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=40.90 E-value=10 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCcccccccCc
Q 027020 148 VDPDNENSLSRKRVRYCKICKA 169 (229)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (229)
-.|..|+..-||--.||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 4588898888888888887754
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.37 E-value=50 Score=22.30 Aligned_cols=42 Identities=12% Similarity=-0.038 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCCCcccccccCc--c---cccccccccccccccccc
Q 027020 146 LGVDPDNENSLSRKRVRYCKICKA--H---VEGFDHHCPAFGNCIGQN 188 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--C---V~r~DHHCpWl~nCIG~~ 188 (229)
..+.|..|+..-..-.-.|+ |+. | -.--||.|++-..=.|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~gr~ 60 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAGSG 60 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCCCS
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHHHH
Confidence 35789999986555568884 765 2 233399999877665554
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.18 E-value=6.3 Score=35.28 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCCCCCCC--CCCCCcccccccCccc
Q 027020 147 GVDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
...|..|.. .--.|-|||+.||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 456888874 2235679999998743
No 20
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=36.55 E-value=12 Score=23.70 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCcccccccCc
Q 027020 148 VDPDNENSLSRKRVRYCKICKA 169 (229)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (229)
-.|..|+..-||--.||..|-.
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 4699999888888888887754
No 21
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.84 E-value=17 Score=32.20 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCC---CCCcccccccCccccc
Q 027020 146 LGVDPDNENSLS---RKRVRYCKICKAHVEG 173 (229)
Q Consensus 146 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~r 173 (229)
...+|..|...- -.|-|||+.||..|.+
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 457899998532 4678999999876554
No 22
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=33.26 E-value=12 Score=29.39 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCcccccccCcccc--ccc-cccc
Q 027020 149 DPDNENSLSRKRVRYCKICKAHVE--GFD-HHCP 179 (229)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~CV~--r~D-HHCp 179 (229)
.|-.|++-+...-.||..||.|+. ..| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 455555555566677777777743 333 5553
No 23
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=28.16 E-value=23 Score=20.68 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCcccccccCc
Q 027020 148 VDPDNENSLSRKRVRYCKICKA 169 (229)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (229)
--|..|..+-++.+.+|..|+.
T Consensus 8 W~C~~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 8 WDCDTCLVQNKPEAVKCVACET 29 (33)
T ss_dssp EECTTTCCEECTTCSBCTTTCC
T ss_pred eeCCcccCCCccccCEEcccCC
Confidence 3488888888888888888763
No 24
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=23.91 E-value=19 Score=26.90 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCCCCCcccccc--cCcc
Q 027020 146 LGVDPDNENSLSRKRVRYCKI--CKAH 170 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 170 (229)
...+|..|..+-|+|++.|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 457899999999999999994 8764
No 25
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.03 E-value=26 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCCCCCCCCC--CCCcccccccCcccc
Q 027020 148 VDPDNENSLS--RKRVRYCKICKAHVE 172 (229)
Q Consensus 148 ~~C~~C~~~k--P~Rs~HC~~C~~CV~ 172 (229)
..|+.|+..- ..+..||..|++-+.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~ 59 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIE 59 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEE
T ss_pred ccCccCCCcceecCCEEECccccchhh
Confidence 6788888532 234667888888543
No 26
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.19 E-value=30 Score=24.51 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCcccccccCc
Q 027020 150 PDNENSLSRKRVRYCKICKA 169 (229)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~~ 169 (229)
|..|+..-++.+ .|++|++
T Consensus 21 C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 21 CETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp CTTTCCEEEEEE-ECSSSCS
T ss_pred CccccccCCCcc-cCcchhh
Confidence 555554444444 5555543
No 27
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.05 E-value=62 Score=22.00 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCCCc---ccccccCc--cc-ccc--cccccccccccccc
Q 027020 147 GVDPDNENSLSRKRV---RYCKICKA--HV-EGF--DHHCPAFGNCIGQN 188 (229)
Q Consensus 147 ~~~C~~C~~~kP~Rs---~HC~~C~~--CV-~r~--DHHCpWl~nCIG~~ 188 (229)
.+.|..|+..-..-. ..| .|+. |- .|+ ||.|.+-.+=.|++
T Consensus 15 ~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk~~gr~ 63 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHMGRGSG 63 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSSCSSCC
T ss_pred CCcchhhCCeecccccCceEe-cCCCEehhccCCccccCCcccccccccc
Confidence 467999987666542 678 6764 32 333 99999877665553
No 28
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=20.47 E-value=1.5e+02 Score=17.81 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=9.4
Q ss_pred HhcCCCCCCCCCC
Q 027020 123 MSKDPGLITNEFP 135 (229)
Q Consensus 123 ~~~dPG~vp~~~~ 135 (229)
...|||.-|...+
T Consensus 24 LsnDP~RNP~rkd 36 (38)
T 3arc_I 24 LSGDPARNPKRKD 36 (38)
T ss_dssp HTTGGGCSSSCCC
T ss_pred cCCCCCCCCCccc
Confidence 4579999887543
Done!