Query 027020
Match_columns 229
No_of_seqs 223 out of 1396
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027020.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027020hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 78.7 0.35 2.6E-05 30.5 1.3 24 146-169 18-41 (56)
2 d1vfya_ g.50.1.1 (A:) vps27p p 78.5 0.46 3.4E-05 30.8 1.9 25 148-172 6-32 (67)
3 d1joca1 g.50.1.1 (A:1348-1411) 78.2 0.45 3.3E-05 30.6 1.8 24 148-171 9-34 (64)
4 d2dkta2 g.93.1.1 (A:82-137) RI 73.7 0.34 2.4E-05 30.7 0.1 23 150-172 23-45 (56)
5 d1dvpa2 g.50.1.1 (A:149-220) H 73.0 0.88 6.4E-05 29.8 2.2 25 148-172 14-40 (72)
6 d1wfka_ g.50.1.1 (A:) Zinc fin 71.9 1.1 8E-05 30.5 2.6 25 147-171 9-35 (88)
7 d2dkta2 g.93.1.1 (A:82-137) RI 63.4 0.98 7.1E-05 28.5 0.7 39 149-187 4-46 (56)
8 d2dmda2 g.37.1.1 (A:8-33) Zinc 63.2 0.86 6.3E-05 23.8 0.3 15 162-176 2-16 (26)
9 d2adra2 g.37.1.1 (A:131-161) A 61.1 0.89 6.5E-05 25.0 0.2 14 162-175 2-15 (31)
10 d2pg3a1 c.26.2.1 (A:1-230) Que 57.3 1.1 7.8E-05 34.6 0.1 21 151-173 186-206 (230)
11 d2c6aa1 g.41.11.1 (A:290-335) 57.2 1.7 0.00013 26.1 1.0 21 148-168 14-34 (46)
12 d2cr8a1 g.41.11.1 (A:8-48) MDM 49.6 3 0.00022 24.3 1.2 22 148-169 5-26 (41)
13 d1wila_ g.50.1.3 (A:) Hypothet 44.7 7.7 0.00056 26.1 2.9 26 146-171 14-39 (89)
14 d1olza3 g.16.2.1 (A:481-536) S 44.4 1.7 0.00012 27.1 -0.6 23 165-187 6-31 (56)
15 d1njqa_ g.37.1.3 (A:) SUPERMAN 41.8 4.3 0.00031 23.2 1.0 13 158-170 2-14 (37)
16 d1y02a2 g.50.1.1 (A:20-70) Rif 41.5 3.4 0.00025 25.1 0.6 22 150-171 3-26 (51)
17 d1bora_ g.44.1.1 (A:) Acute pr 41.1 14 0.001 22.3 3.6 33 148-181 7-43 (56)
18 d1zbdb_ g.50.1.1 (B:) Effector 34.2 9.8 0.00071 26.8 2.2 25 147-171 48-75 (124)
19 d1q5wa_ g.41.11.1 (A:) Npl4 {R 30.6 10 0.00074 20.4 1.3 20 149-168 8-27 (31)
20 d1lpva_ g.62.1.1 (A:) DM domai 25.9 12 0.00088 22.8 1.2 25 158-182 7-33 (52)
21 d2dlqa2 g.37.1.1 (A:35-62) GLI 25.4 11 0.00081 19.6 0.8 12 163-174 3-14 (28)
22 d2gnra1 b.40.4.15 (A:8-144) Hy 22.4 7.1 0.00052 28.1 -0.5 30 141-170 33-62 (137)
23 d2gqea1 g.41.11.1 (A:3-31) Nuc 21.3 20 0.0015 19.0 1.4 19 150-168 7-25 (29)
24 d2cona1 g.41.15.1 (A:8-73) RNA 20.4 18 0.0013 22.9 1.3 20 150-169 11-31 (66)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=78.74 E-value=0.35 Score=30.52 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCCCcccccccCc
Q 027020 146 LGVDPDNENSLSRKRVRYCKICKA 169 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~ 169 (229)
....|..|..+-|+|+..|+.|+.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 456899999999999999998865
No 2
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=78.48 E-value=0.46 Score=30.78 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=18.0
Q ss_pred CCCCCCCC--CCCCCcccccccCcccc
Q 027020 148 VDPDNENS--LSRKRVRYCKICKAHVE 172 (229)
Q Consensus 148 ~~C~~C~~--~kP~Rs~HC~~C~~CV~ 172 (229)
+.|..|+. -.-.|-|||+.||+-+=
T Consensus 6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 6 DACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred cccccCCCcccCcccccccccCCCEec
Confidence 34888875 33567899999998653
No 3
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.23 E-value=0.45 Score=30.56 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=17.4
Q ss_pred CCCCCCCC--CCCCCcccccccCccc
Q 027020 148 VDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 148 ~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
..|..|.. -.-.|-|||+.||+-+
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCcCCcccCCccccchhhhCCee
Confidence 45888864 3345779999999865
No 4
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=73.65 E-value=0.34 Score=30.75 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCcccccccCcccc
Q 027020 150 PDNENSLSRKRVRYCKICKAHVE 172 (229)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~~CV~ 172 (229)
|-.|++=+...-.||..|+.|+.
T Consensus 23 CgiCRvG~~~~ffHC~~C~~C~~ 45 (56)
T d2dkta2 23 CGICRIGPKEDFFHCLKCNLCLT 45 (56)
T ss_dssp TTEEEESCGGGEEEETTTTEEEE
T ss_pred CCceeecCCccccccCccccccC
Confidence 44444444445566666666653
No 5
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=73.00 E-value=0.88 Score=29.82 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=18.4
Q ss_pred CCCCCCCC--CCCCCcccccccCcccc
Q 027020 148 VDPDNENS--LSRKRVRYCKICKAHVE 172 (229)
Q Consensus 148 ~~C~~C~~--~kP~Rs~HC~~C~~CV~ 172 (229)
+.|..|+. -.-.|-|||+.||+.+=
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccccCCCcccCccccccccccCCeeC
Confidence 45888875 33567899999998653
No 6
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=71.92 E-value=1.1 Score=30.55 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=18.8
Q ss_pred CCCCCCCCC--CCCCCcccccccCccc
Q 027020 147 GVDPDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
...|..|+. --..|-|||+.||+.+
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCcCcccCchhccccccccccccChhh
Confidence 467888875 3356789999999854
No 7
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.35 E-value=0.98 Score=28.47 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCCCCCCCC-CCCcccccccCccccc---cccccccccccccc
Q 027020 149 DPDNENSLS-RKRVRYCKICKAHVEG---FDHHCPAFGNCIGQ 187 (229)
Q Consensus 149 ~C~~C~~~k-P~Rs~HC~~C~~CV~r---~DHHCpWl~nCIG~ 187 (229)
+|..|+.+- .....||..||.|-.+ -=-||.-=|.|+..
T Consensus 4 fC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 4 YCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp ECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCc
Confidence 688888763 3345899999999743 23589888888865
No 8
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.17 E-value=0.86 Score=23.80 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=12.2
Q ss_pred ccccccCcccccccc
Q 027020 162 RYCKICKAHVEGFDH 176 (229)
Q Consensus 162 ~HC~~C~~CV~r~DH 176 (229)
|.|..|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 569999999888763
No 9
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=61.07 E-value=0.89 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=12.3
Q ss_pred ccccccCccccccc
Q 027020 162 RYCKICKAHVEGFD 175 (229)
Q Consensus 162 ~HC~~C~~CV~r~D 175 (229)
.+|..|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 46999999999987
No 10
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=57.27 E-value=1.1 Score=34.57 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=17.4
Q ss_pred CCCCCCCCCCcccccccCccccc
Q 027020 151 DNENSLSRKRVRYCKICKAHVEG 173 (229)
Q Consensus 151 ~~C~~~kP~Rs~HC~~C~~CV~r 173 (229)
.+| ++|.+.+||..|..|+.|
T Consensus 186 ~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 186 LTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp CCC--TTSCCTTTTSCSHHHHHH
T ss_pred CCC--CCCCCCCCCCCCHhHHHH
Confidence 445 677888999999999987
No 11
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.24 E-value=1.7 Score=26.05 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCcccccccC
Q 027020 148 VDPDNENSLSRKRVRYCKICK 168 (229)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~ 168 (229)
-.|..|+..-||--.||.+|=
T Consensus 14 WkC~~C~~~N~Pl~ryC~rCW 34 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred ccCccccccCCcchhHhHHHH
Confidence 469999999999999998874
No 12
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.63 E-value=3 Score=24.33 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCcccccccCc
Q 027020 148 VDPDNENSLSRKRVRYCKICKA 169 (229)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (229)
-.|..|+..-||--.||.+|=.
T Consensus 5 WkC~~C~~~N~Pl~ryC~rCWa 26 (41)
T d2cr8a1 5 WQCTECKKFNSPSKRYCFRCWA 26 (41)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecCcccccCCcchhHHHHHHH
Confidence 3588898888888888887743
No 13
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.65 E-value=7.7 Score=26.11 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCCCcccccccCccc
Q 027020 146 LGVDPDNENSLSRKRVRYCKICKAHV 171 (229)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV 171 (229)
.+.-|+.|..+....-.-||.|+|+-
T Consensus 14 ~D~mC~vC~v~t~~~l~pCRvCtRv~ 39 (89)
T d1wila_ 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred cCccccccCcccccceecceeecchh
Confidence 35679999999988888999999974
No 14
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.40 E-value=1.7 Score=27.10 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.0
Q ss_pred cccCccccccccccccc---cccccc
Q 027020 165 KICKAHVEGFDHHCPAF---GNCIGQ 187 (229)
Q Consensus 165 ~~C~~CV~r~DHHCpWl---~nCIG~ 187 (229)
+.|+.||.-.|-||.|= +.|+..
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 46899999999999995 678754
No 15
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=41.79 E-value=4.3 Score=23.23 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=11.0
Q ss_pred CCCcccccccCcc
Q 027020 158 RKRVRYCKICKAH 170 (229)
Q Consensus 158 P~Rs~HC~~C~~C 170 (229)
|+|.+-|+.|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7889999999874
No 16
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.53 E-value=3.4 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.5
Q ss_pred CCCCCC--CCCCCcccccccCccc
Q 027020 150 PDNENS--LSRKRVRYCKICKAHV 171 (229)
Q Consensus 150 C~~C~~--~kP~Rs~HC~~C~~CV 171 (229)
|..|+. -.-.|-|||+.||+-+
T Consensus 3 C~~C~~~F~~~~rkhhCr~CG~~f 26 (51)
T d1y02a2 3 CKSCGAHFANTARKQTCLDCKKNF 26 (51)
T ss_dssp CTTTCCCCSSGGGCEECTTTCCEE
T ss_pred ccccCCcccCCccCcccccCCccc
Confidence 555553 2345679999999843
No 17
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.14 E-value=14 Score=22.31 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=19.2
Q ss_pred CCCCCCCC----CCCCCcccccccCccccccccccccc
Q 027020 148 VDPDNENS----LSRKRVRYCKICKAHVEGFDHHCPAF 181 (229)
Q Consensus 148 ~~C~~C~~----~kP~Rs~HC~~C~~CV~r~DHHCpWl 181 (229)
-.|..|.. .+-....| ..|..|+.+..+.||-=
T Consensus 7 l~C~IC~~~~~~p~~lpCgH-~fC~~Ci~~~~~~CP~C 43 (56)
T d1bora_ 7 LRCQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQCPIC 43 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSC-CSBTTTCSSSSSSCSSC
T ss_pred CCCcccCcccCCCEEecCCC-HHhHHHHHcCCCcCcCC
Confidence 35666652 11122456 56777887777777743
No 18
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.22 E-value=9.8 Score=26.78 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=17.9
Q ss_pred CCCCCCCCCC-C--CCCcccccccCccc
Q 027020 147 GVDPDNENSL-S--RKRVRYCKICKAHV 171 (229)
Q Consensus 147 ~~~C~~C~~~-k--P~Rs~HC~~C~~CV 171 (229)
.+.|..|... . ..|.|||+.|++-|
T Consensus 48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~ 75 (124)
T d1zbdb_ 48 VNRCILCGEQLGMLGSASVVCEDCKKNV 75 (124)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred CCcCcccCCcccCCCCCCCcCccCCccc
Confidence 4569999764 3 35678999998754
No 19
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=30.64 E-value=10 Score=20.42 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCcccccccC
Q 027020 149 DPDNENSLSRKRVRYCKICK 168 (229)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~ 168 (229)
-|..|-....+.+.||.-|+
T Consensus 8 sC~HCTf~N~pgtd~CeMC~ 27 (31)
T d1q5wa_ 8 ACQHCTFMNQPGTGHCEMCS 27 (31)
T ss_dssp ECSSSCCEECTTCSBCTTTC
T ss_pred EeeeeeeecCCCCCcchhhc
Confidence 37777777777788887765
No 20
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.85 E-value=12 Score=22.78 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=13.6
Q ss_pred CCCcccccccCcccccccc--cccccc
Q 027020 158 RKRVRYCKICKAHVEGFDH--HCPAFG 182 (229)
Q Consensus 158 P~Rs~HC~~C~~CV~r~DH--HCpWl~ 182 (229)
||+...|+.=|.-+..-+| +|+|-+
T Consensus 7 ~p~CaRCrNHG~~~~lKgHKr~C~~~~ 33 (52)
T d1lpva_ 7 PPNCARCRNHGLKITLKGHKRYCKFRY 33 (52)
T ss_dssp CSSCHHHHTTTCCCTTTTCGGGCTTTT
T ss_pred CCCCcccccCCceeecCCcccccCCCC
Confidence 4444444433444444445 999976
No 21
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.44 E-value=11 Score=19.59 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=9.5
Q ss_pred cccccCcccccc
Q 027020 163 YCKICKAHVEGF 174 (229)
Q Consensus 163 HC~~C~~CV~r~ 174 (229)
.|..||+|..|-
T Consensus 3 ~c~kcgkcyfrk 14 (28)
T d2dlqa2 3 ECPKCGKCYFRK 14 (28)
T ss_dssp BCTTTCCBCSSH
T ss_pred ccccchhhhhhH
Confidence 588999998763
No 22
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=22.36 E-value=7.1 Score=28.12 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=19.6
Q ss_pred hcCCCCCCCCCCCCCCCCCCcccccccCcc
Q 027020 141 VEGSELGVDPDNENSLSRKRVRYCKICKAH 170 (229)
Q Consensus 141 ~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~C 170 (229)
++.+.....|..|....-+...+|..|+.-
T Consensus 33 ~egrL~~~~C~~CG~v~~Ppr~~Cp~C~s~ 62 (137)
T d2gnra1 33 KQNKIIGSKCSKCGRIFVPARSYCEHCFVK 62 (137)
T ss_dssp HTTCCEEEECTTTCCEEESCCSEETTTTEE
T ss_pred hcCeEEEEEcCCCCCEEeCccccCCCCCCC
Confidence 334445678999976554444569888763
No 23
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=20 Score=19.05 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCcccccccC
Q 027020 150 PDNENSLSRKRVRYCKICK 168 (229)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~ 168 (229)
|+.|+++-...+..|-.|+
T Consensus 7 C~~C~v~N~~~~~~CvAC~ 25 (29)
T d2gqea1 7 CDTCLVQNKPEAIKCVACE 25 (29)
T ss_dssp CSSSCCEECTTCSBCSSSC
T ss_pred CCceEeEChhhCCEEeecC
Confidence 6666666666666666664
No 24
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.37 E-value=18 Score=22.93 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCccc-ccccCc
Q 027020 150 PDNENSLSRKRVRY-CKICKA 169 (229)
Q Consensus 150 C~~C~~~kP~Rs~H-C~~C~~ 169 (229)
|..|....++-+++ |+.||.
T Consensus 11 C~aCf~~t~~~~k~FCpkCGn 31 (66)
T d2cona1 11 CHGCFKTTSDMNRVFCGHCGN 31 (66)
T ss_dssp CSSSCCEESCSSCCSCSSSCC
T ss_pred eeecCcCcCCcccccCcccCC
Confidence 56665555554433 666654
Done!