Query 027021
Match_columns 229
No_of_seqs 196 out of 438
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12937 F-box-like: F-box-lik 99.6 3.1E-15 6.7E-20 100.5 3.8 46 100-145 1-46 (47)
2 PF00646 F-box: F-box domain; 99.1 8.4E-11 1.8E-15 78.4 4.3 47 99-145 2-48 (48)
3 smart00256 FBOX A Receptor for 99.0 3.2E-10 6.9E-15 72.3 3.7 40 103-142 1-40 (41)
4 KOG2997 F-box protein FBX9 [Ge 98.6 2.3E-08 5E-13 93.0 3.0 77 95-171 102-190 (366)
5 KOG3926 F-box proteins [Amino 98.3 1.1E-06 2.3E-11 80.7 5.4 98 84-181 186-290 (332)
6 KOG2120 SCF ubiquitin ligase, 98.2 3.5E-07 7.7E-12 85.5 1.7 50 100-149 98-147 (419)
7 KOG0281 Beta-TrCP (transducin 98.1 2.3E-06 5.1E-11 81.0 4.3 54 95-148 70-127 (499)
8 KOG0274 Cdc4 and related F-box 98.0 4.1E-06 8.9E-11 82.5 3.7 81 92-172 100-189 (537)
9 PF06881 Elongin_A: RNA polyme 97.9 1.5E-05 3.2E-10 62.9 5.2 70 99-170 3-74 (109)
10 KOG4341 F-box protein containi 97.8 1.1E-05 2.3E-10 77.9 2.8 53 98-150 69-122 (483)
11 TIGR02246 conserved hypothetic 96.7 0.0045 9.8E-08 47.1 6.1 56 168-225 3-58 (128)
12 KOG4408 Putative Mg2+ and Co2+ 96.3 0.00023 5E-09 67.1 -4.1 77 99-175 7-84 (386)
13 PF13474 SnoaL_3: SnoaL-like d 96.2 0.011 2.4E-07 44.3 5.2 54 171-226 1-55 (121)
14 PF13013 F-box-like_2: F-box-l 95.3 0.024 5.2E-07 45.5 4.1 33 99-131 21-53 (109)
15 PF14534 DUF4440: Domain of un 92.9 0.14 3.1E-06 37.0 3.7 49 171-222 1-49 (107)
16 PF12680 SnoaL_2: SnoaL-like d 92.8 0.17 3.8E-06 35.9 3.9 47 176-225 2-48 (102)
17 cd00781 ketosteroid_isomerase 91.4 0.63 1.4E-05 35.4 5.8 54 170-225 4-58 (122)
18 PLN03215 ascorbic acid mannose 91.3 0.19 4.1E-06 48.1 3.3 37 100-136 4-41 (373)
19 COG4319 Ketosteroid isomerase 90.3 0.96 2.1E-05 37.9 6.3 55 169-225 10-64 (137)
20 PF11533 DUF3225: Protein of u 85.6 1.8 4E-05 35.7 5.1 49 169-218 10-58 (125)
21 TIGR02096 conserved hypothetic 85.0 2.5 5.4E-05 32.2 5.3 51 174-225 3-53 (129)
22 PF09372 PRANC: PRANC domain; 84.8 0.83 1.8E-05 34.8 2.6 26 98-123 70-95 (97)
23 PRK08241 RNA polymerase factor 83.4 2.8 6.1E-05 38.1 5.8 50 173-224 218-268 (339)
24 TIGR02960 SigX5 RNA polymerase 81.6 3.4 7.4E-05 37.1 5.6 51 173-224 208-258 (324)
25 PF13577 SnoaL_4: SnoaL-like d 71.2 5.2 0.00011 30.1 3.3 59 166-224 4-62 (127)
26 PHA03100 ankyrin repeat protei 64.6 4.1 8.9E-05 38.1 1.9 31 98-128 446-476 (480)
27 PRK09636 RNA polymerase sigma 64.4 21 0.00046 32.0 6.3 51 173-225 175-232 (293)
28 PF02136 NTF2: Nuclear transpo 63.2 8 0.00017 29.3 3.0 47 175-223 6-53 (118)
29 PF08332 CaMKII_AD: Calcium/ca 61.9 24 0.00053 28.9 5.7 55 168-224 2-58 (128)
30 PHA03095 ankyrin-like protein; 57.0 8 0.00017 36.0 2.4 24 101-124 443-466 (471)
31 PHA02875 ankyrin repeat protei 54.3 6.1 0.00013 36.4 1.1 27 98-124 385-411 (413)
32 PHA02989 ankyrin repeat protei 53.4 12 0.00027 35.8 3.0 30 97-126 456-485 (494)
33 PHA02878 ankyrin repeat protei 47.7 12 0.00027 35.5 2.0 26 98-123 445-470 (477)
34 cd00531 NTF2_like Nuclear tran 44.5 54 0.0012 23.2 4.7 48 175-224 5-56 (124)
35 PF12669 P12: Virus attachment 43.0 29 0.00062 24.7 2.9 13 15-27 4-16 (58)
36 PF07858 LEH: Limonene-1,2-epo 42.7 64 0.0014 26.3 5.2 50 173-223 5-54 (125)
37 TIGR02957 SigX4 RNA polymerase 39.6 90 0.002 27.9 6.2 51 173-224 168-224 (281)
38 PHA02798 ankyrin-like protein; 39.0 21 0.00045 34.2 2.1 27 97-123 461-487 (489)
39 TIGR03602 streptolysinS bacter 33.8 16 0.00035 25.9 0.4 12 51-62 22-33 (56)
40 PLN03181 glycosyltransferase; 29.9 1E+02 0.0022 30.6 5.2 32 7-38 27-59 (453)
41 PRK03427 cell division protein 29.1 57 0.0012 31.1 3.2 21 13-33 8-30 (333)
42 KOG1777 Putative Zn-finger pro 28.9 25 0.00054 35.2 0.9 39 159-197 1-39 (625)
43 COG3631 Ketosteroid isomerase- 26.4 1.1E+02 0.0023 25.1 4.1 32 173-206 8-39 (133)
44 COG4307 Uncharacterized protei 25.8 1.1E+02 0.0024 28.9 4.5 53 129-181 183-245 (349)
45 PF07803 GSG-1: GSG1-like prot 24.8 1E+02 0.0022 25.4 3.5 26 10-35 5-30 (118)
46 PHA02876 ankyrin repeat protei 24.1 46 0.001 33.2 1.8 27 97-123 653-679 (682)
47 PF07366 SnoaL: SnoaL-like pol 23.6 1.1E+02 0.0024 23.1 3.5 46 177-224 5-51 (126)
48 PF06364 DUF1068: Protein of u 23.4 33 0.00072 29.9 0.6 20 12-31 5-24 (176)
49 PF03448 MgtE_N: MgtE intracel 22.3 92 0.002 22.9 2.8 32 93-124 39-70 (102)
50 PF12893 Lumazine_bd_2: Putati 22.2 1.5E+02 0.0033 22.5 4.1 38 167-204 2-39 (116)
51 PF14642 FAM47: FAM47 family 21.4 49 0.0011 30.5 1.2 23 97-119 134-157 (258)
No 1
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.55 E-value=3.1e-15 Score=100.52 Aligned_cols=46 Identities=37% Similarity=0.541 Sum_probs=41.1
Q ss_pred hhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHH
Q 027021 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 145 (229)
Q Consensus 100 l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~ 145 (229)
+..||+||+.+||+|||+.||+++++|||+|+++++++.+||++|.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 4679999999999999999999999999999999999999999875
No 2
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=99.11 E-value=8.4e-11 Score=78.38 Aligned_cols=47 Identities=32% Similarity=0.475 Sum_probs=41.0
Q ss_pred hhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHH
Q 027021 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 145 (229)
Q Consensus 99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~ 145 (229)
.+.+||+|++.+||+||+..|++++++|||.|++++.++.+|++.++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 46789999999999999999999999999999999999999998864
No 3
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=99.01 E-value=3.2e-10 Score=72.35 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=38.8
Q ss_pred ccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHH
Q 027021 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKA 142 (229)
Q Consensus 103 LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~ 142 (229)
||+|++.+||+||++.|++++++|||+|+.+..++.+|++
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999985
No 4
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=98.60 E-value=2.3e-08 Score=93.01 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=63.3
Q ss_pred CcCchhhhccHHHHHHHcc-----CCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccCCCCC-------CCcch
Q 027021 95 SGASMMEQLVPEITTHALS-----YLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIP-------VNGWK 162 (229)
Q Consensus 95 ~~~~~l~~LP~EILl~ILS-----yLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~~~~~-------~~~WK 162 (229)
++-..+..||+|||+.||. .||.+||-++|.|||.|+..+.+|.+||.-|.+.|+....+..+ ..+||
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR 181 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWR 181 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHH
Confidence 3344478899999999884 78999999999999999999999999999999988764332222 58999
Q ss_pred HHHHHHHHH
Q 027021 163 AYYAATRAV 171 (229)
Q Consensus 163 ~lY~~~rAI 171 (229)
++|+.+-.|
T Consensus 182 ~Mfl~RpRv 190 (366)
T KOG2997|consen 182 EMFLERPRV 190 (366)
T ss_pred HHHhhCcce
Confidence 999876654
No 5
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=98.28 E-value=1.1e-06 Score=80.67 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=77.0
Q ss_pred ccccchhcccCCcCchhhhccHHHHHHHcc-CCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCccc------CCCC
Q 027021 84 TAATAVVAERGSGASMMEQLVPEITTHALS-YLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ------DSVI 156 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~LP~EILl~ILS-yLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~------~~~~ 156 (229)
....+...+|.+....+.+||.|+++.|+. +-|..||..++|+=-.++.+.+++.+||.||+=+|...| .+..
T Consensus 186 v~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~ 265 (332)
T KOG3926|consen 186 VLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKK 265 (332)
T ss_pred HHHhhcccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccc
Confidence 334445555666777789999999998765 558899999999999999999999999999998887643 1233
Q ss_pred CCCcchHHHHHHHHHHHhhHHHHHH
Q 027021 157 PVNGWKAYYAATRAVVNVNAEFFNI 181 (229)
Q Consensus 157 ~~~~WK~lY~~~rAIv~vn~~fY~a 181 (229)
....||..|.+.+.--.+.+.|-+.
T Consensus 266 ~q~dWkqmyf~L~r~yg~keqyad~ 290 (332)
T KOG3926|consen 266 GQKDWKQMYFQLRRTYGVKEQYADT 290 (332)
T ss_pred cchhHHHHHHHHHHhcChHHHHHHH
Confidence 4578999999999877776665444
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.5e-07 Score=85.49 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=45.7
Q ss_pred hhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcC
Q 027021 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 149 (229)
Q Consensus 100 l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~ 149 (229)
.+.||+||++.||+.|.-++|++++-|||||++++.|+.+|..+-...-+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~ 147 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN 147 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc
Confidence 78999999999999999999999999999999999999999988554433
No 7
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.12 E-value=2.3e-06 Score=80.95 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=50.5
Q ss_pred CcCchhhhcc----HHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhc
Q 027021 95 SGASMMEQLV----PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148 (229)
Q Consensus 95 ~~~~~l~~LP----~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f 148 (229)
...++++.|| +||..+||||||..|||.+-.||++|+++.+|..+||+|+.+..
T Consensus 70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~v 127 (499)
T KOG0281|consen 70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMV 127 (499)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhc
Confidence 5578999999 99999999999999999999999999999999999999987553
No 8
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.00 E-value=4.1e-06 Score=82.47 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=66.1
Q ss_pred ccCCcCchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccCCC---CC------CCcch
Q 027021 92 ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV---IP------VNGWK 162 (229)
Q Consensus 92 ~~~~~~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~~~---~~------~~~WK 162 (229)
++....+++..||.|+..+||+|||+++|+++.|||+.|+.++.++..|.+.+........... .+ ...||
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 179 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK 179 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence 4667789999999999999999999999999999999999999999999999887765432111 11 25889
Q ss_pred HHHHHHHHHH
Q 027021 163 AYYAATRAVV 172 (229)
Q Consensus 163 ~lY~~~rAIv 172 (229)
.+|..+..+.
T Consensus 180 s~~~~~~~~~ 189 (537)
T KOG0274|consen 180 SFYRRRFRLS 189 (537)
T ss_pred hhhhhhhhcc
Confidence 9888776554
No 9
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=97.95 E-value=1.5e-05 Score=62.88 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=57.5
Q ss_pred hhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccC--CCCCCCcchHHHHHHHH
Q 027021 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD--SVIPVNGWKAYYAATRA 170 (229)
Q Consensus 99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~--~~~~~~~WK~lY~~~rA 170 (229)
.+..+|-+++..||..+.+..|.++-.-|..+... +|.||+++|+++|+.... .+..+.+|+++|...+.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK 74 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence 35679999999999999999999999999665554 789999999999986332 33445699999998764
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=77.92 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=46.6
Q ss_pred chhh-hccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCc
Q 027021 98 SMME-QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL 150 (229)
Q Consensus 98 ~~l~-~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~ 150 (229)
+.++ .||||++++||||||..+|++.+|+|+.|+.+|.|..-|.++-..+|+.
T Consensus 69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r 122 (483)
T KOG4341|consen 69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR 122 (483)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh
Confidence 4444 7999999999999999999999999999999999999999986555543
No 11
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.74 E-value=0.0045 Score=47.13 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=46.5
Q ss_pred HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ 225 (229)
Q Consensus 168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~ 225 (229)
..+|.....+|++++..+|.++|+.+|.++....+ .+|+ .+.|+++|++.|+..+.
T Consensus 3 ~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-~~g~-~~~G~~~i~~~~~~~~~ 58 (128)
T TIGR02246 3 ERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVT-VPGQ-VWKGREAIAAAHEAFLA 58 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-CCCC-eecCHHHHHHHHHHHhc
Confidence 56788888999999999999999999988754443 2444 88999999999998764
No 12
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.00023 Score=67.06 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=61.5
Q ss_pred hhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccC-CCCCCCcchHHHHHHHHHHHhh
Q 027021 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD-SVIPVNGWKAYYAATRAVVNVN 175 (229)
Q Consensus 99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~-~~~~~~~WK~lY~~~rAIv~vn 175 (229)
.++.||..+++.|+++|++++|.+++.|.|++.++++.+.+|++.|++++..... ...+...||-++.....-+.+.
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~is~e~~~~~~etgqsF~h~~f~yvgvv 84 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLISEEEKTQKYETGQSFLHDTFGYVGVV 84 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccccccccCCcccccceeeeeecccceEE
Confidence 4678999999999999999999999999999999999999999999999886432 3334567776554444444333
No 13
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.19 E-value=0.011 Score=44.32 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC-ccccchHHHHHHHHHhhcc
Q 027021 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-ELFSGYDSFYLVLGNVAQW 226 (229)
Q Consensus 171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg-~~l~G~daV~~sW~~if~~ 226 (229)
|.....+|++++..+|+++|.++|+ +.+..++++. +.+.|+++|++-|+..|..
T Consensus 1 V~~~~~~~~~a~~~~D~~~~~~~~~--~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 55 (121)
T PF13474_consen 1 VEALLEEWIEAFERGDIDALLSLFS--DDFVFFGTGPGEIWRGREAIRAYFERDFES 55 (121)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHEE--EEEEEEETTSSSEEESHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHhhC--CCEEEEcCCCCceECCHHHHHHHHHHHhhh
Confidence 3456678999999999999999999 6688888765 6667999999999998853
No 14
>PF13013 F-box-like_2: F-box-like domain
Probab=95.30 E-value=0.024 Score=45.48 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=29.9
Q ss_pred hhhhccHHHHHHHccCCChHHHHHHhhhcHHHH
Q 027021 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 131 (229)
Q Consensus 99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~ 131 (229)
.+.+||.||+..|+.|++.++++.++.+|+..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYR 53 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999443
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=92.90 E-value=0.14 Score=37.00 Aligned_cols=49 Identities=6% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHH
Q 027021 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGN 222 (229)
Q Consensus 171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~ 222 (229)
|.....+|.+++..+|++.+..++++ ...-+|++|..+ |.+++++.+..
T Consensus 1 I~a~~~~~~~A~~~~D~~~~~~~~~~--d~~~~~~~g~~~-~~~~~l~~~~~ 49 (107)
T PF14534_consen 1 IRALEEQYEDAFNAGDIDALASLYAD--DFVFVGPGGTIL-GKEAILAAFKS 49 (107)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHTTEEE--EEEEEETTSEEE-EHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHhhhCC--CEEEECCCCCEe-CHHHHHHHHhh
Confidence 45677889999999999999999984 477789999886 99999999976
No 16
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=92.79 E-value=0.17 Score=35.88 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=39.8
Q ss_pred HHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021 176 AEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ 225 (229)
Q Consensus 176 ~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~ 225 (229)
.+||+++..+|+++|..++.++ ++-.+| +..+.|.+++++-|+..+.
T Consensus 2 ~~~~~a~~~~d~~~i~~~~~~d--~~~~~~-~~~~~g~~~~~~~~~~~~~ 48 (102)
T PF12680_consen 2 RRFFEAWNAGDLDAIAALFAPD--AVFHDP-GGTLRGREAIREFFEEFFE 48 (102)
T ss_dssp HHHHHHHHTTHHHHHHHTEEEE--EEEEET-TSEEESHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHcCCC--EEEEeC-CCcccCHHHHHHHHHHHHh
Confidence 5799999999999999998876 555688 5458999999999998874
No 17
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=91.37 E-value=0.63 Score=35.36 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhhc
Q 027021 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVAQ 225 (229)
Q Consensus 170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if~ 225 (229)
++.....+||+++.++|++.|..++.++-.. ..| +...+.|.++|++-|...+.
T Consensus 4 ~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~--~~p~~~~~~~G~~~i~~~~~~~~~ 58 (122)
T cd00781 4 EMKAAVQRYVEAVNAGDPEGIVALFADDATV--EDPVGSPPRSGRAAIAAFYAQSLG 58 (122)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHcCCCeEE--eCCCCCCCccCHHHHHHHHHHHhc
Confidence 3445566799999999999999998877433 334 45678999999999988653
No 18
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.26 E-value=0.19 Score=48.09 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=32.7
Q ss_pred hhhccHHHHHHHccCC-ChHHHHHHhhhcHHHHHHcCC
Q 027021 100 MEQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKAAND 136 (229)
Q Consensus 100 l~~LP~EILl~ILSyL-D~~dL~~lsqvcR~~~~lA~d 136 (229)
..+||+|||..|...| ...|+++...|||.||..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4589999999999999 677999999999999986553
No 19
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=90.30 E-value=0.96 Score=37.86 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=47.1
Q ss_pred HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021 169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ 225 (229)
Q Consensus 169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~ 225 (229)
++|-+++..|-.+++.+|+++.+....++ ++-+-|.|..+.|.++|+.-|+.+|+
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdD--av~f~~~~~~~~Gk~~i~k~~~~~~~ 64 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDD--AVVFPPPGLQRKGKAAIRKAFEGIFA 64 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCc--eEEecCCCCcccCHHHHHHHHHHHHH
Confidence 56777888899999999999999987655 56666779999999999999999994
No 20
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=85.63 E-value=1.8 Score=35.71 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHH
Q 027021 169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYL 218 (229)
Q Consensus 169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~ 218 (229)
..+..+-.+|.+++..+|++.|+.+-+++.++.-.- .++.|.|+++|++
T Consensus 10 aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg-~~E~LyG~~aI~a 58 (125)
T PF11533_consen 10 AEVTAAFDRYERALMANDVDALDALFWDDPRTVRYG-AGENLYGHDAIRA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEE-TTEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEEC-CCccccCHHHHHH
Confidence 345667778889999999999999999998887663 4678899999974
No 21
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=85.00 E-value=2.5 Score=32.21 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021 174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ 225 (229)
Q Consensus 174 vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~ 225 (229)
+..+||+++.++|++.+.++..++- +...++.+..+.|.+++++-++.++.
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~-~~~~~~~~~~~~G~~~~~~~~~~~~~ 53 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDV-LYDDNQGGRVLGGKAQLARFLAPYRT 53 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCe-EEEcCCCCcEeccHHHHHHHHHHHHH
Confidence 4567999999999999999988773 33333344566779999988877663
No 22
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=84.83 E-value=0.83 Score=34.84 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.4
Q ss_pred chhhhccHHHHHHHccCCChHHHHHH
Q 027021 98 SMMEQLVPEITTHALSYLDYPSLCRL 123 (229)
Q Consensus 98 ~~l~~LP~EILl~ILSyLD~~dL~~l 123 (229)
+.+..||.||-.+||+||+-.||..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 66778999999999999999999764
No 23
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=83.35 E-value=2.8 Score=38.13 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=40.0
Q ss_pred HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhh
Q 027021 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVA 224 (229)
Q Consensus 173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if 224 (229)
.+..+||+++..||+++|..+++++ |++..| ++..+.|.++|++-|..++
T Consensus 218 ~~v~~~~~A~~~gD~~~l~~lla~D--v~~~~p~~~~~~~G~~~v~~~~~~~~ 268 (339)
T PRK08241 218 ALLARYVAAFEAYDVDALVALLTED--ATWSMPPFPLWYRGRDAIAAFLAGQC 268 (339)
T ss_pred HHHHHHHHHHhcCCHHHHHHHhcCC--EEEEcCCCCCcccCHHHHHHHHHhhc
Confidence 4556899999999999999998875 444445 4555999999999998864
No 24
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=81.59 E-value=3.4 Score=37.10 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA 224 (229)
Q Consensus 173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if 224 (229)
....+||+++..||++.+.++++.+- +..+.+++..+.|.++|...+..++
T Consensus 208 ~~v~~~~~a~~~gD~~~l~~Lla~Dv-~~~~p~~~~~~~G~~~v~~~~~~~~ 258 (324)
T TIGR02960 208 DLLERYIAAFESYDLDALTALLHEDA-IWEMPPYTLWYQGRPAIVGFIHTVC 258 (324)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcCCe-EEEcCCCCcceeCHHHHHHHHHHhc
Confidence 45678999999999999999998873 3335567788999999999998873
No 25
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=71.18 E-value=5.2 Score=30.06 Aligned_cols=59 Identities=8% Similarity=0.061 Sum_probs=44.0
Q ss_pred HHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA 224 (229)
Q Consensus 166 ~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if 224 (229)
..+.+|.+....|..++-.++.+.|..+|.++..+.--+.+...+.|.++|++..+..+
T Consensus 4 ~d~~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~ 62 (127)
T PF13577_consen 4 EDRAAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARF 62 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhc
Confidence 35678888899999999999999999999885433322222367889999999887754
No 26
>PHA03100 ankyrin repeat protein; Provisional
Probab=64.61 E-value=4.1 Score=38.12 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=25.8
Q ss_pred chhhhccHHHHHHHccCCChHHHHHHhhhcH
Q 027021 98 SMMEQLVPEITTHALSYLDYPSLCRLSMTNS 128 (229)
Q Consensus 98 ~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR 128 (229)
+....||.||-.+||+||+-.||-.+-.-+.
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 4566799999999999999999987765443
No 27
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=64.36 E-value=21 Score=31.95 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=38.3
Q ss_pred HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC-Cc------cccchHHHHHHHHHhhc
Q 027021 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GE------LFSGYDSFYLVLGNVAQ 225 (229)
Q Consensus 173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg-g~------~l~G~daV~~sW~~if~ 225 (229)
.+..+|++++..||++++.++-.++ |....+| |. .+.|.++|.+-+..++.
T Consensus 175 ~~v~~f~~A~~~gD~~~l~~Lla~D--v~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~ 232 (293)
T PRK09636 175 ELVEAFFAALASGDLDALVALLAPD--VVLHADGGGKVPTALRPIYGADKVARFFLGLAR 232 (293)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhC--eEEEecCCCccCCCCccccCHHHHHHHHHHHhh
Confidence 4567899999999999999997655 4444333 33 26799999998877763
No 28
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=63.22 E-value=8 Score=29.25 Aligned_cols=47 Identities=6% Similarity=0.250 Sum_probs=37.9
Q ss_pred hHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCc-cccchHHHHHHHHHh
Q 027021 175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-LFSGYDSFYLVLGNV 223 (229)
Q Consensus 175 n~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~-~l~G~daV~~sW~~i 223 (229)
...||+.+..+|...+..++. +.-...++.|. .+.|.++|.+-++..
T Consensus 6 v~~Yy~~~d~~~~~~L~~~Y~--~~~s~~~~~~~~~~~G~~~I~~~~~~l 53 (118)
T PF02136_consen 6 VQQYYQLFDSGDREGLHKLYH--DDASFLTWNGNRPVVGREAIQEFFQSL 53 (118)
T ss_dssp HHHHHHHHHHTHGGGGGGGEE--EEEEEEEETTECEEESHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHc--CCCeeecCCCchhhhhHHHHHHHHhcC
Confidence 356889988888888888876 34567788888 899999999988765
No 29
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=61.86 E-value=24 Score=28.87 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC--CCccccchHHHHHHHHHhh
Q 027021 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYDSFYLVLGNVA 224 (229)
Q Consensus 168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP--gg~~l~G~daV~~sW~~if 224 (229)
-+.|.....++.++|..||.+.+..+++.+ +.|..| .+.+..|.+.++.=++..+
T Consensus 2 e~eI~~l~~~w~~ai~tgD~~~~~~ly~~d--~av~~Pt~s~~~~~g~~~~~~YF~~~l 58 (128)
T PF08332_consen 2 EQEIAALFDRWNDAIQTGDPETYAKLYAPD--VAVFEPTVSNQLREGLEFHKFYFDHFL 58 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHEEEE--EEEEEGGGTTSEEESCHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHhhhcCCC--eeEeccccCCceecChHHHHHHHhccc
Confidence 357888999999999999999999998765 677777 7899999999988777654
No 30
>PHA03095 ankyrin-like protein; Provisional
Probab=57.04 E-value=8 Score=36.01 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.3
Q ss_pred hhccHHHHHHHccCCChHHHHHHh
Q 027021 101 EQLVPEITTHALSYLDYPSLCRLS 124 (229)
Q Consensus 101 ~~LP~EILl~ILSyLD~~dL~~ls 124 (229)
..||.||..+||+||+-.||-.+-
T Consensus 443 ~~lP~Ei~~~Il~~l~~~dl~~~~ 466 (471)
T PHA03095 443 CALPPEIVMRILDFLPDDDLRNLL 466 (471)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHh
Confidence 579999999999999999996643
No 31
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.31 E-value=6.1 Score=36.44 Aligned_cols=27 Identities=19% Similarity=0.011 Sum_probs=23.1
Q ss_pred chhhhccHHHHHHHccCCChHHHHHHh
Q 027021 98 SMMEQLVPEITTHALSYLDYPSLCRLS 124 (229)
Q Consensus 98 ~~l~~LP~EILl~ILSyLD~~dL~~ls 124 (229)
+....||.||-.+||+||+-.||..+.
T Consensus 385 ~~w~~LP~Eik~~Il~~l~~~dL~~~~ 411 (413)
T PHA02875 385 SKWNILPHEIKYLILEKIGNKDIDIAI 411 (413)
T ss_pred cchhcCcHHHHHHHHHHhccchhhhhc
Confidence 446679999999999999999997653
No 32
>PHA02989 ankyrin repeat protein; Provisional
Probab=53.37 E-value=12 Score=35.78 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=25.4
Q ss_pred CchhhhccHHHHHHHccCCChHHHHHHhhh
Q 027021 97 ASMMEQLVPEITTHALSYLDYPSLCRLSMT 126 (229)
Q Consensus 97 ~~~l~~LP~EILl~ILSyLD~~dL~~lsqv 126 (229)
.+.+..||+||..+||+||+-.||-.+.+-
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~~ 485 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILKF 485 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHhh
Confidence 355778999999999999999999776653
No 33
>PHA02878 ankyrin repeat protein; Provisional
Probab=47.69 E-value=12 Score=35.48 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.0
Q ss_pred chhhhccHHHHHHHccCCChHHHHHH
Q 027021 98 SMMEQLVPEITTHALSYLDYPSLCRL 123 (229)
Q Consensus 98 ~~l~~LP~EILl~ILSyLD~~dL~~l 123 (229)
+....||.||-.+||+||+-.||..+
T Consensus 445 ~~w~~lP~Eik~~Il~~l~~~dl~~~ 470 (477)
T PHA02878 445 YMWNRLPLEIKHYIMELLDDASLCNM 470 (477)
T ss_pred CcHhhCCHHHHHHHHHHcCcHHHHHH
Confidence 55778999999999999999999654
No 34
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=44.52 E-value=54 Score=23.24 Aligned_cols=48 Identities=4% Similarity=0.007 Sum_probs=36.0
Q ss_pred hHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC----ccccchHHHHHHHHHhh
Q 027021 175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYDSFYLVLGNVA 224 (229)
Q Consensus 175 n~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg----~~l~G~daV~~sW~~if 224 (229)
..+||+.+-.+|.+.+..+|.++. ....+++ ....|.++|++-++...
T Consensus 5 ~~~y~~~ld~~~~~~l~~~~~~d~--~~~~~~~~~~~~~~~g~~~i~~~~~~~~ 56 (124)
T cd00531 5 LYRYARLLDAGDREWLALLYADDA--YFEPPGGDGLIYPDDGREAIEDRVRRLP 56 (124)
T ss_pred HHHHHHHhCCchHHHHHhhCcCcE--EEEEccCCEEEEcCChHHHHHHHHHhcC
Confidence 345778888788898999987654 3345654 67789999999988765
No 35
>PF12669 P12: Virus attachment protein p12 family
Probab=42.99 E-value=29 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 027021 15 IAAIFTIFSLLLA 27 (229)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (229)
|++++.+..+.++
T Consensus 4 I~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 4 IGIIILAAVAYVA 16 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 4444433333334
No 36
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=42.74 E-value=64 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=37.3
Q ss_pred HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHh
Q 027021 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNV 223 (229)
Q Consensus 173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~i 223 (229)
++.++|.+++..+|+++....+..++.| ...-+-+.+.|.+++++-++..
T Consensus 5 ~vV~~F~~a~~~~D~~~a~~~~~~~d~v-y~Nvplp~i~G~~~~~~~l~~~ 54 (125)
T PF07858_consen 5 EVVRAFLAALEDRDVDAALASLFDDDAV-YHNVPLPPIRGRDAIRAFLRGF 54 (125)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHCEECC-E-EEETTTEEEESHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcCCCcE-EEeCCCCCcccHHHHHHHHHHH
Confidence 4667899999999998766666666544 4456777789999999988765
No 37
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=39.55 E-value=90 Score=27.90 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCc------cccchHHHHHHHHHhh
Q 027021 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE------LFSGYDSFYLVLGNVA 224 (229)
Q Consensus 173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~------~l~G~daV~~sW~~if 224 (229)
....+|.+++..||++++.++-+++- +.....||+ .+.|.+.|.+-+..++
T Consensus 168 ~~~~~f~~a~~~gD~~~l~~lL~~dv-~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~ 224 (281)
T TIGR02957 168 QLLERFVEAAQTGDLDGLLELLAEDV-VLYGDGGGKVRAALRPIYGADRVARFFFGLV 224 (281)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhce-EEEecCCCcCCCCCcccccHHHHHHHHHHHh
Confidence 45568999999999999999977663 344434444 3889999998877665
No 38
>PHA02798 ankyrin-like protein; Provisional
Probab=38.98 E-value=21 Score=34.17 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=23.1
Q ss_pred CchhhhccHHHHHHHccCCChHHHHHH
Q 027021 97 ASMMEQLVPEITTHALSYLDYPSLCRL 123 (229)
Q Consensus 97 ~~~l~~LP~EILl~ILSyLD~~dL~~l 123 (229)
.+.+..||.||-.+|+.||+-.||--+
T Consensus 461 ~~~w~~lP~Eik~~Il~~L~~~dl~~~ 487 (489)
T PHA02798 461 LSYWNYIPNEIKFKIINNLSNNDILET 487 (489)
T ss_pred cchhhhCCHHHHHHHHHcCChHHHHHH
Confidence 356788999999999999999998543
No 39
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=33.81 E-value=16 Score=25.88 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=6.3
Q ss_pred CCCCCcccccCC
Q 027021 51 ARKKSCNCTCSC 62 (229)
Q Consensus 51 ~~~~~c~c~c~~ 62 (229)
.+-.+|.|+|-|
T Consensus 22 apggcccccc~c 33 (56)
T TIGR03602 22 APGGCCCCCCCC 33 (56)
T ss_pred cCCCeEEEeccE
Confidence 344555555555
No 40
>PLN03181 glycosyltransferase; Provisional
Probab=29.85 E-value=1e+02 Score=30.61 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.0
Q ss_pred ccchhHHHHHHHHHH-HHHHHHHHHHhcCCCCC
Q 027021 7 TFFSSQFVIAAIFTI-FSLLLAVRTARSTKSTK 38 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 38 (229)
.+++.-++.++++.. +-+|+++|+|.++.+..
T Consensus 27 ~~~~~~~~f~~ga~~a~ll~~~~~s~~~~~~~~ 59 (453)
T PLN03181 27 SCFSDGVLFLGGAVVAFLLVWSLASILSPSPNP 59 (453)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 456666666555544 77788888888765543
No 41
>PRK03427 cell division protein ZipA; Provisional
Probab=29.08 E-value=57 Score=31.13 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHH-HHHHH-HHHHHhc
Q 027021 13 FVIAAIFTI-FSLLL-AVRTARS 33 (229)
Q Consensus 13 ~~~~~~~~~-~~~~~-~~~~~~~ 33 (229)
.||.+|+.| +.||+ .||+.|.
T Consensus 8 iLivvGAIAIiAlL~HGlWtsRK 30 (333)
T PRK03427 8 ILIIVGAIAIIALLVHGFWTSRK 30 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhccc
Confidence 577777777 55555 9999995
No 42
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=28.85 E-value=25 Score=35.23 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=26.0
Q ss_pred CcchHHHHHHHHHHHhhHHHHHHHHhcChHHHHHhhhcC
Q 027021 159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNA 197 (229)
Q Consensus 159 ~~WK~lY~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~ 197 (229)
++||+.|++.+.-+++..+--.-+...++..++.+-...
T Consensus 1 NPWKEs~~Ql~rGvHV~~~~~~~~~~~~~~~fD~iEea~ 39 (625)
T KOG1777|consen 1 NPWKESFRQLYRGVHVMKNPEQFVGAANIQCFDHIEEAL 39 (625)
T ss_pred CchHHHHHHHhccceeccCHHHhhhhhhhHhhhhHHHHh
Confidence 589999999998877765443444445666666555433
No 43
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=26.44 E-value=1.1e+02 Score=25.11 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC
Q 027021 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS 206 (229)
Q Consensus 173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg 206 (229)
+....+|.++.+||++.+..+++++ ++-.+|+
T Consensus 8 ~~v~~~f~a~~~GD~~~~~~l~a~D--~v~~~p~ 39 (133)
T COG3631 8 DLVRRYFAALSRGDLDGLLALLAED--VVWEVPG 39 (133)
T ss_pred hHHHHHHHHHhcCCHHHHHhhccCc--eEEEeeC
Confidence 3456799999999999999998876 3333565
No 44
>COG4307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.78 E-value=1.1e+02 Score=28.86 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=41.4
Q ss_pred HHHHHcCCchHHHHHHHhhcCcccC----------CCCCCCcchHHHHHHHHHHHhhHHHHHH
Q 027021 129 LMRKAANDDNAWKALYHKDFTLEQD----------SVIPVNGWKAYYAATRAVVNVNAEFFNI 181 (229)
Q Consensus 129 ~~~~lA~dd~LWr~L~~~~f~~~~~----------~~~~~~~WK~lY~~~rAIv~vn~~fY~a 181 (229)
.|+++..|+.-|-..+++.|+.+.+ ...|..+|.+.|+..+|-++--+.|-+.
T Consensus 183 ~~drLI~d~a~~L~afralFGDeraDYaqAL~~~Y~~Gp~pdWqqn~ISsYAt~HpwEDwAEt 245 (349)
T COG4307 183 YFDRLIADSADRLSAFRALFGDERADYAQALDRYYRGGPPPDWQQNFISSYATMHPWEDWAET 245 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCCCcchhhHHHHhhhcCchHHHHHH
Confidence 5778888888888888888876532 3456789999999999998877776555
No 45
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=24.83 E-value=1e+02 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 027021 10 SSQFVIAAIFTIFSLLLAVRTARSTK 35 (229)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (229)
.++.++|++++.|+|.+.+.+|.++-
T Consensus 5 ~~Ra~Ls~~ln~LAL~~S~tA~~sSy 30 (118)
T PF07803_consen 5 RQRALLSLILNLLALAFSTTALLSSY 30 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56789999999999999999998765
No 46
>PHA02876 ankyrin repeat protein; Provisional
Probab=24.10 E-value=46 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.3
Q ss_pred CchhhhccHHHHHHHccCCChHHHHHH
Q 027021 97 ASMMEQLVPEITTHALSYLDYPSLCRL 123 (229)
Q Consensus 97 ~~~l~~LP~EILl~ILSyLD~~dL~~l 123 (229)
.+....||.||-.+||.|||-.||-.+
T Consensus 653 ~~~w~~lP~eik~~Il~~l~~~dl~~~ 679 (682)
T PHA02876 653 SSDWSKLPPDIKLSILEFIDNNELRKI 679 (682)
T ss_pred ccchhhCCHHHHHHHHHHhhhhHHHHH
Confidence 356778999999999999999999754
No 47
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=23.62 E-value=1.1e+02 Score=23.13 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHH-HHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021 177 EFF-NIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA 224 (229)
Q Consensus 177 ~fY-~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if 224 (229)
+|| +.+-++|++.+..+.+.+ +....++.....|.+++++.+..++
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d--~~~~~~~~~~~~G~~~~~~~~~~~~ 51 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPD--VVFHDPGPGPPVGREGFKEFLKELR 51 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEE--EEEEGCTTTEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHhcCCC--EEEEecCCCCCCCHHHHHHHHHHHH
Confidence 345 455888999888876554 4444454477789999999888766
No 48
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=23.41 E-value=33 Score=29.89 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027021 12 QFVIAAIFTIFSLLLAVRTA 31 (229)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (229)
+.++-.++.++.+.++++..
T Consensus 5 ~~~lr~~l~llal~~a~yiv 24 (176)
T PF06364_consen 5 PAALRVVLVLLALCLAGYIV 24 (176)
T ss_pred hhHHHHHHHHHHHHHHhhee
Confidence 44555555555555555443
No 49
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=22.31 E-value=92 Score=22.93 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred cCCcCchhhhccHHHHHHHccCCChHHHHHHh
Q 027021 93 RGSGASMMEQLVPEITTHALSYLDYPSLCRLS 124 (229)
Q Consensus 93 ~~~~~~~l~~LP~EILl~ILSyLD~~dL~~ls 124 (229)
+......++.|+++-+..|++.++..++..+-
T Consensus 39 ~~~~~~il~~l~~~~~a~il~~m~~dd~~~ll 70 (102)
T PF03448_consen 39 PDTQAEILEALSPEEAAEILAEMDSDDAADLL 70 (102)
T ss_dssp CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHccChHHHHHHH
Confidence 34445667778888888888888888777653
No 50
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=22.18 E-value=1.5e+02 Score=22.49 Aligned_cols=38 Identities=5% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEe
Q 027021 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH 204 (229)
Q Consensus 167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIH 204 (229)
...+|..+...|++++..||...|..+-..+-.+..+.
T Consensus 2 d~~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~ 39 (116)
T PF12893_consen 2 DEAAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR 39 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc
Confidence 46788889999999999999999999988777777776
No 51
>PF14642 FAM47: FAM47 family
Probab=21.40 E-value=49 Score=30.55 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.0
Q ss_pred Cchhh-hccHHHHHHHccCCChHH
Q 027021 97 ASMME-QLVPEITTHALSYLDYPS 119 (229)
Q Consensus 97 ~~~l~-~LP~EILl~ILSyLD~~d 119 (229)
...|+ .||+|+|++||.-||+.-
T Consensus 134 yP~LeE~mPpdLll~VLevLDPer 157 (258)
T PF14642_consen 134 YPHLEEDMPPDLLLKVLEVLDPER 157 (258)
T ss_pred CCCccccCCHHHHHHHHhccCccc
Confidence 44454 799999999999999874
Done!