BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027022
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 19/166 (11%)
Query: 61 SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
+A + +LQ +E V+LFQE +PSVV I +L + ++ + + +++ V +G
Sbjct: 2 AAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQD--AFTLDVLEVP------QG 53
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
+GSGFVWDK GHIVTNYHV+ G +V+L D + K+VG D D+
Sbjct: 54 SGSGFVWDKQGHIVTNYHVI-------RGASDLRVTLADQT----TFDAKVVGFDQDKDV 102
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
AVL++D +L+P+ +G S DL VGQ FAIGNP+G + TLTTGV
Sbjct: 103 AVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGV 148
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCK--VSLFDAKGNGFYREGKMVGCDPAYD 179
GSG + G I+TN HV+A A G K V+ D + F +VG DP D
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFT----VVGADPTSD 88
Query: 180 LAVLKVD-VEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
+AV++V V G L P+ LG+S DLRVGQ AIG+P G E T+TTG+
Sbjct: 89 IAVVRVQGVSG--LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGI 134
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D
Sbjct: 46 ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
+A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+
Sbjct: 95 IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D
Sbjct: 46 ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
+A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+
Sbjct: 95 IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D+
Sbjct: 47 SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 95
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+
Sbjct: 96 ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D+
Sbjct: 64 SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 112
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+
Sbjct: 113 ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 157
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D+
Sbjct: 64 SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 112
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+
Sbjct: 113 ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 157
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 23/162 (14%)
Query: 75 EDRVVQLFQETSPSVVSIQDLELSK----NP------KSTSSELMLVDGEYAKVEGTGSG 124
E +V + + +P+VV I ++ K +P K EL G +V GSG
Sbjct: 3 ESPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELP--PGFERQVASLGSG 60
Query: 125 FVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLK 184
F++D G+I+TNYHVV G V++ D G + + +G D D+AV+K
Sbjct: 61 FIFDPEGYILTNYHVVG-------GADNITVTMLD----GSKYDAEYIGGDEELDIAVIK 109
Query: 185 VDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
+ + + G S +++G+ AIGNP GF+ T+T GV
Sbjct: 110 IKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGV 151
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
DLAVLK+D + LK +V+G S L VG AIGNP+G
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 27 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 73
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 74 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 123
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 124 PHIGDVVLAIGNPYNLGQTITQGI 147
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 82 FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 36 VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI- 83
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 132
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 133 VPHIGDVVLAIGNPYNLGQTITQGI 157
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 82 FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 10 VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI- 57
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 58 ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 106
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 107 VPHIGDVVLAIGNPYNLGQTITQGI 131
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 11 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 57
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 58 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 107
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 108 PHIGDVVLAIGNPYNLGQTITQGI 131
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
DLAVLK+D + LK +V+G S L VG AIGNP+G
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
DLAVLK+D + LK +V+G S L VG AIGNP+G
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
DLAVLK+D + LK +V+G S L VG AIGNP+G
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIXDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 82 FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 10 VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIXDQRGYIITNKHVI- 57
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 58 ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 106
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 107 VPHIGDVVLAIGNPYNLGQTITQGI 131
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY +T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQVITQGI 157
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + K VG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + K VG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV KV L D G + K VG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
A++++ L + S LRVG AIGNP+G +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 119 EGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA 177
EG GSG + + G+++TN HV+ + + + L D G + K++G D
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQ 110
Query: 178 YDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
D+A+L++ +L + + S LRVG A+GNP+G T T+G+
Sbjct: 111 SDIALLQIQ-NPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNP T+T G+
Sbjct: 134 PHIGDVVLAIGNPANLGQTITQGI 157
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 119 EGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA 177
EG GSG + + G+++TN HV+ + + + L D G + K++G D
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQ 110
Query: 178 YDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
D+A+L++ +L + + S LRVG A+GNP+G T T+G+
Sbjct: 111 SDIALLQIQ-NPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNP T+T G+
Sbjct: 134 PHIGDVVLAIGNPANLGQTITQGI 157
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 110 LVDGEYAKVEGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYRE 168
L D EG GSG + + G+++TN HV+ + + + L D G +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND----GREFD 101
Query: 169 GKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
K++G D D+A+L++ +L + + S LRVG A+GNP+G T T+G+
Sbjct: 102 AKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 23/144 (15%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 16 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 62
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVL + G L + +
Sbjct: 63 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLIIKATG-GLPTIPINARRV 112
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
+G AIGNPY T+T G+
Sbjct: 113 PHIGDVVLAIGNPYNLGQTITQGI 136
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Query: 78 VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNY 137
+ + ++T+P+VV I+ L+ ++P G + GSGFV G IVTN
Sbjct: 17 IADVVEKTAPAVVYIEILD--RHP---------FLGREVPIS-NGSGFVVAADGLIVTNA 64
Query: 138 HVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVL 197
HVVA L +G E + DP D+A L++ + L + L
Sbjct: 65 HVVADRRRVRVRLL-----------SGDTYEAVVTAVDPVADIATLRIQTKE-PLPTLPL 112
Query: 198 GTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
G S D+R G+ A+G+P+ ++T+T+G+
Sbjct: 113 GRSADVRQGEFVVAMGSPFALQNTITSGI 141
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 74 EEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHI 133
+ + L+ +S S + D+++++ +S+++ + DG + G+GSG V++K G +
Sbjct: 245 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT---MSDGRVFTIGGSGSGGVFEKNGEV 301
Query: 134 VT----------NYHVVAKLATDTSGLHRC--KVSLFDAKGNGFYREGKMVGCDPAY 178
+ N V L D GL+R LF K ++ G + Y
Sbjct: 302 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 358
>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 245
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYR-----EGKMVGCDP---AYDLAVLK 184
IVTNYHV + A + S + DA+ N F E + + P DLA++K
Sbjct: 59 IVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIK 118
Query: 185 V------DVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
+ + G ++P + D++ G +G PY +
Sbjct: 119 LKPNEKGESAGDLIQPANIPDHIDIQKGDKYSLLGYPYNY 158
>pdb|3VSK|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSK|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSL|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form.
pdb|3VSL|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form
Length = 646
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 61 SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
S I Q DEL ++ +V+ +F+E + V D ++ KN + E V + +K+ G
Sbjct: 119 SKIRKSQLDELSSKDLQVLAIFREMNAGTVL--DPQMIKNEDVSEKEYAAVSQQLSKLPG 176
Query: 121 TGSGFVWDK 129
+ WD+
Sbjct: 177 VNTSMDWDR 185
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 38 SSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLEL 97
+ IL ++C + + F S + +LQ ED + Q+ +TS I+ ++L
Sbjct: 7 NCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQL 66
Query: 98 SKNPKSTSSELML 110
+ NP +S M+
Sbjct: 67 TYNPDESSKPNMI 79
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYR-----EGKMVGCDP---AYDLAVLK 184
IVTNYHV + A + S + DA+ N F E + + P DLA++K
Sbjct: 60 IVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIK 119
Query: 185 V------DVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
+ + G ++P + D+ G +G PY +
Sbjct: 120 LKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNY 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,467,669
Number of Sequences: 62578
Number of extensions: 264990
Number of successful extensions: 680
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 53
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)