BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027023
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 20 NNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79
N N+ EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I +
Sbjct: 13 NVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 80 L 80
L
Sbjct: 73 L 73
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 45.4 bits (106), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
C IC D+ Q P+ CGH FC C+ + + +CP+CK ++ + +
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 40.8 bits (94), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71
C IC D+ Q P+ CGH FC C+ + + +CP+C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 30 ECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72
EC IC D D I+ C H FC C+ KW H R CP+C+
Sbjct: 17 ECCICMDGRADLILP-CAHSFCQKCIDKWSDRH---RNCPICR 55
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71
C++C + ++P++ CGH FC C+ +W CPVC
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 26 AGNFECNICFD----LAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
+G C IC D + Q+ + T CGH+FC CL L N CP C+ I +
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHK 64
Query: 79 KLVPLY 84
+ P+Y
Sbjct: 65 RYHPIY 70
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 26 AGNFECNICFD----LAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
+G C IC D + Q+ + T CGH+FC CL L N CP C+ I +
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHK 61
Query: 79 KLVPLY 84
+ P+Y
Sbjct: 62 RYHPIY 67
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 26 AGNFECNICFD----LAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
+G C IC D + Q+ + T CGH+FC CL L N CP C+ I +
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHK 126
Query: 79 KLVPLY 84
+ P+Y
Sbjct: 127 RYHPIY 132
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S+ + CP C+ I+
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAW--QESDGQGCPFCRCEIK 384
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLH--GHSNYRECPVCKATIEEEKLVP 82
+EC IC ++ + T CGH FC C+ K + GH +CPV + E +L P
Sbjct: 7 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH----KCPVDNEILLENQLFP 58
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72
+ C IC + DP+ T C HLFC C+ + L +Y CP C+
Sbjct: 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSY--CPSCR 65
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S + CP C+ I+
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCEIK 380
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S + CP C+ I+
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCEIK 380
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S + CP C+ I+
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCEIK 378
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S + CP C+ I+
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCEIK 378
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 36.6 bits (83), Expect = 0.012, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 31 CNICFD----LAQDP---IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83
C IC D + Q+ + T CGH+FC CL L N CP C+ I ++ P+
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHKRYHPI 62
Query: 84 Y 84
Y
Sbjct: 63 Y 63
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLH--GHSNYRECPVCKATIEEEKLVP 82
+EC IC ++ + T CGH FC C+ K + GH +CPV + E +L P
Sbjct: 25 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH----KCPVDNEILLENQLFP 77
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S+ + CP C+ I+
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAW--QESDGQGCPFCRCEIK 72
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S + CP C+ I+
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCEIK 73
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
+C IC + + + C H FC C+ +W+ ECP+C+ I
Sbjct: 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI---ECPICRKDI 97
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCL---YKWLHGHSNYRECPVCKATIEEEKLVP 82
C IC +L P+ CGH FC CL +K CPVC+ + + E + P
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + +D + CGHL C CL W S + CP C+ I+
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCEIK 70
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
+C IC + + + C H FC C+ +W+ ECP+C+ I+
Sbjct: 63 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI---ECPICRKDIK 109
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
+C IC + + + C H FC C+ +W+ ECP+C+ I
Sbjct: 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI---ECPICRKDI 97
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLH--GHSNYRECPVCKATIEEEKLVP 82
+EC IC ++ + T CGH FC C+ K + GH CPV + E +L P
Sbjct: 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK----CPVDNEILLENQLFP 70
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 33.9 bits (76), Expect = 0.069, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 30 ECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
EC +C +D + CGH F C+ WL HS CP+C+ T+
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST---CPLCRLTV 53
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLH--GHSNYRECPVCKATIEEEKLVP 82
+EC IC ++ + T CGH FC C+ K + GH +CPV + E +L P
Sbjct: 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH----KCPVDNEILLENQLFP 70
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
C +C D A + CGHL C C + CP+C+A +
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECA-------PGLQLCPICRAPV 53
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 26 AGNFECNICFD----LAQDP---IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
+G C IC D + Q+ + T CGH+FC CL L N CP C+ I +
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHK 69
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
Query: 31 CNICFDLAQDPIVTLCGHLF----CWPCLYKWLHGHSNYRECPVCKATIE 76
C +C D + CGHL C P L R+CP+C++TI+
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSL----------RKCPICRSTIK 66
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 31 CNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
C IC + + + L C H FC+ C+ +W+ + CP+CK +E
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT---CPLCKVPVE 51
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 30 ECNICFDL---AQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
+C IC + +D C HLF C+ +WL + ++CP+C+ IE +
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---KKCPICRVDIEAQ 64
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84
F C I +L +DP++ G + + KWL + ++ CP + T+ L P Y
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWL--DAGHKTCPKSQETLLHAGLTPNY 62
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 18 SNNNSNSEAGNFECNICFDLAQD----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73
S+ N ++ EC IC + + P + CGH C CL K L N CP C
Sbjct: 5 SSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
Query: 74 TIEEEKLVPL 83
L L
Sbjct: 65 ITRITSLTQL 74
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYR---ECPVCKA 73
C IC +L ++P+ C H FC C+ + N CPVC+
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 32.0 bits (71), Expect = 0.27, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
++C C + P T CGH FC C+ L S +C C+ +I ++K+
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSP--KCTACQESIVKDKV 65
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72
F+C C +L PI T+C H C CL + CP C+
Sbjct: 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--VFSCPACR 94
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 30 ECNICFDLAQDPIVTLCGHLFCWPCL--YKWLHGHSNYRECPVCKATIEEEKL 80
EC IC P+ C H+FC+ C+ WL + C +C+ I E+ L
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-----KRCALCRQEIPEDFL 64
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPC 54
F C IC Q+P+VT C H FC C
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESC 41
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 8 STSRSAQNP-YSNNNSNSEAGNFECNIC---FDLAQDPIVTLCGHLFCWPCLYKWLHGHS 63
S+ S Q P Y N +N ++ C +C F+ Q V C H F C+ KWL +
Sbjct: 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN- 60
Query: 64 NYRECPVCKA 73
R CP+C+A
Sbjct: 61 --RTCPICRA 68
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
+C IC ++ +P+ C H C PC + S CP C+ +
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLC--CPFCRRRV 60
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 22 SNSEAGNFE----CNICFDLAQDPIVTLCGHLFCWPCLY----KWLHGHSNYRECPVC 71
S+ +GN + C IC +L +P+ CGH C C+ + + CPVC
Sbjct: 2 SSGSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 29 FECNIC---FDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
EC +C + L + C HLF C+ WL H + CPVC+ ++
Sbjct: 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS---CPVCRKSL 62
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d
Length = 100
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 18 SNNNSNSEAGNFECNICFDLAQDP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
+ S A F C IC + +D + C L C+ C+ +WL +CP C+A ++
Sbjct: 12 DEQSVESIAEVFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRA--QCPHCRAPLQ 69
Query: 77 EEKLV 81
+LV
Sbjct: 70 LRELV 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 31 CNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIE 76
C +C D + CGHL C C + R+CP+C+ I+
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQEC-------APSLRKCPICRGIIK 337
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72
+F C C +L P+ T C H C CL + CP C+
Sbjct: 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--VFSCPACR 120
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 150 TLSAAFGGLIPPLFNLQVHGFPDPTM---YGP---AASFPYGFTNSFH-GGH 194
T+ A + G+IPP NL+ PDP + + P A Y +NSF GGH
Sbjct: 351 TVQALYHGVIPPTINLE---DPDPELDLDFVPEPREAKVDYALSNSFAFGGH 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,406,168
Number of Sequences: 62578
Number of extensions: 293221
Number of successful extensions: 778
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 53
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)