BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027023
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 75/114 (65%), Gaps = 9/114 (7%)
Query: 6 GESTSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNY 65
T ++ P S++N + E+ FECNIC D A+D +V+LCGHLFCWPCL +WL N
Sbjct: 2 ASETKAPSEEPTSSSNKD-ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNN 60
Query: 66 RECPVCKATIEEEKLVPLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPE 119
+ CPVCK+ I+ K+VP+YGRG S+DPR K +P RP GQR E PPP+
Sbjct: 61 QVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE--PPPQ 106
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 21 NSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHS--------NYRECPVCK 72
+ +++ NF+CNIC D Q+P+VTLCGHLFCWPC++KWL S +R+CPVCK
Sbjct: 38 SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97
Query: 73 ATIEEEKLVPLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEP---SHFQHQHGF 129
+ + LVPLYGRG+ +T K+ ++P RP G P P + +
Sbjct: 98 SKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVGPVYRLEMPNSPYASTDLRLSQRV 153
Query: 130 GFMGGLGGFAPMAAARFGNFTLSAAFGGLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNS 189
F G+ P++ N S ++ ++ P+ + V ++G + + ++
Sbjct: 154 HFNSPQEGYYPVSGVMSSN---SLSYSAVLDPVM-VMVGEMVATRLFGTRVMDRFAYPDT 209
Query: 190 FHGGHAHGYPQHTGQGQQDYYLKRLLLFIGFCVLLVLI 227
++ G Q D L R+ F CV+L L+
Sbjct: 210 YNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLL 247
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 16/121 (13%)
Query: 3 SSFGESTSRSAQN-----PYSNNNSNSEAG----NFECNICFDLAQDPIVTLCGHLFCWP 53
+S G S S S +N P ++N E+G FECNIC D A+D +++LCGHLFCWP
Sbjct: 2 ASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWP 61
Query: 54 CLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRP 112
CL++WL N + CPVCKA I +K++PLYGRG + DPR K+ P RP GQRP
Sbjct: 62 CLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRP 115
Query: 113 E 113
E
Sbjct: 116 E 116
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 8/97 (8%)
Query: 18 SNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77
+ +N+N + FECNIC D A+D +++LCGHLFCWPCL++WL N + CPVCKA I
Sbjct: 29 AGDNTNQD-NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISR 87
Query: 78 EKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 113
+K++PLYGRG + DPR K+ P RP GQRPE
Sbjct: 88 DKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 21 NSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
S + FECNIC D A+D +++LCGHLFCWPCL++WL N + CPVCKA I +K+
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 81 VPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 113
+PLYGRG + DPR K+ P RP GQRPE
Sbjct: 89 IPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 21 NSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
S + FECNIC D A+D +++LCGHLFCWPCL++WL N + CPVCKA I +K+
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 81 VPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 113
+PLYGRG + DPR K+ P RP GQRPE
Sbjct: 89 IPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 21 NSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
S + FECNIC D A+D +++LCGHLFCWPCL++WL N + CPVCKA I +K+
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 81 VPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 113
+PLYGRG + DPR K+ P RP GQRPE
Sbjct: 89 IPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 97/203 (47%), Gaps = 52/203 (25%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG 87
FECNIC D ++D +++LCGHLFCWPCL++WL N + CPVCKA I +K++PLYGRG
Sbjct: 38 TFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRG 97
Query: 88 KS-STDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMG-GLGGFAPMAAAR 145
+ DPR K+ P RP GQRPE F G M G+G F
Sbjct: 98 STGQQDPREKT------PPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFP------ 145
Query: 146 FGNFTLSAAFGGLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNSFHGGHAHGYPQHTGQG 205
FG F + FN+ G P P A G PQHT
Sbjct: 146 FGIFATA----------FNIN-DGRPPPA--------------------APGTPQHT--- 171
Query: 206 QQDYYLKRLLLFIGFCVLLVLIW 228
+ +L RL LF+ LL++ W
Sbjct: 172 -DEQFLSRLFLFVA---LLIMFW 190
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 19 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
N + FECNIC + A++ +V++CGHL+CWPCL++WL + +ECPVCKA I E
Sbjct: 15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISRE 74
Query: 79 KLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGG 137
K+VPLYGRG + DPR K+ P RP GQRP F GF F G+G
Sbjct: 75 KVVPLYGRGSQKPQDPRLKT------PPRPQGQRPAPESRGGFQPFGDAGGFHFSFGVGA 128
Query: 138 F 138
F
Sbjct: 129 F 129
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 19 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
N + FECNIC + A++ +V++CGHL+CWPCL++WL + +ECPVCKA I E
Sbjct: 15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISRE 74
Query: 79 KLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGG 137
K+VPLYGRG + DPR K+ P RP GQRP F GF F G+G
Sbjct: 75 KVVPLYGRGSQKPQDPRLKT------PPRPQGQRPAPESRGGFQPFGDAGGFHFSFGVGA 128
Query: 138 F 138
F
Sbjct: 129 F 129
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Query: 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRE--------CPVCKATIEE 77
+G F+CNIC D +P++TLCGHL+CWPC+YKW++ S E CPVCKA + E
Sbjct: 36 SGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSE 95
Query: 78 EKLVPLYGRGKSSTDPRSKSIP--GVNIPNRPTGQR-------PETAPPPEPSHFQHQHG 128
+ L+PLYGRG ST P P G+ IP RP R P T PS + G
Sbjct: 96 KTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTD--SNPSQLLQRRG 153
Query: 129 FGFMGGLGGFAPMAAARFGNFTLSAAFGGLIPPLFNLQVHGFPDPTMYGPAASFPYGFTN 188
+ P + + + + G L + + ++G +++ Y + N
Sbjct: 154 YQQQSQTR--QPAYQGSYMSSPMLSPGGATANMLQHSMIGEVAYARIFGNSSTTMYTYPN 211
Query: 189 SFHGGHAHGYPQHTGQGQQDYYLKRLLLFIGFCVLLVLI 227
S++ + Q D L R+ F+ C + LI
Sbjct: 212 SYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLI 250
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 19 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78
N FECNIC + A++ +V++CGHL+CWPCL++WL +ECPVCKA I E
Sbjct: 15 NRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISRE 74
Query: 79 KLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGG 137
K+VPLYGRG + DPR K+ P RP GQRP F GF F G+G
Sbjct: 75 KVVPLYGRGSQKPQDPRLKT------PPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGA 128
Query: 138 F 138
F
Sbjct: 129 F 129
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH-------SNYRECPVCKATIE 76
+E+G F+CNIC D A DP+VTLCGHLFCWPC+YKWLH + CPVCK+ I
Sbjct: 37 NESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNIT 96
Query: 77 EEKLVPLYGRGKSSTD----PRSKSIPGVNIPNRPTG---QRPETAPPPEPSHFQHQ 126
LVPLYGRG SS + + +IP RP + P T+ QHQ
Sbjct: 97 ITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQ 153
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 19/96 (19%)
Query: 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRE-------------CPVCKA 73
G+F+CNIC D +DP+VTLCGHLFCWPC++KW + +N R+ CPVCK+
Sbjct: 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76
Query: 74 TIEEEKLVPLYGRGKSSTDPRSKSIPGVNIPNRPTG 109
+ E LVP+YGRG+ + P+S G N+P+RPTG
Sbjct: 77 DVSEATLVPIYGRGQKA--PQS----GSNVPSRPTG 106
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 9 TSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYREC 68
TS + + +S ++S S +C +C Q P T CGH+FCW C+ +W + +EC
Sbjct: 305 TSEAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN---EKQEC 361
Query: 69 PVCKATIEEEKLVPLY 84
P+C+ LV LY
Sbjct: 362 PLCRTPNTHSSLVCLY 377
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 30 ECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYG 85
+C +C ++ T+CGHLFCW C+ +W +N +CPVC+ I VPLY
Sbjct: 321 KCTLCLEVRTHTTATICGHLFCWHCITEWC---NNKEQCPVCRCPISIRTCVPLYN 373
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81
S + EC IC D P++T C H+FC PC+ + +H + +CP+C+ I + L+
Sbjct: 747 SSGSDEECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLL 804
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81
S + EC IC D P++T C H+FC PC+ + + + +CP+C+ I E+ L+
Sbjct: 753 SSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLL 810
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83
C +C +DP CGH+FCW C+ W+ +ECP+C+A + E +L+PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVKER---QECPLCRAKMRESQLLPL 294
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88
C+IC D+ Q P++T CGH FC C+ ++L+ S CP+C A + + L + G+
Sbjct: 30 LRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESR---CPLCLAELRQNMLQKEFLVGE 86
Query: 89 SST---DPRSKSIPGVNIPNRPTGQRPETAPPPE 119
+ + R++ + V IP + + + P E
Sbjct: 87 LAACYMELRARLLETVRIPPKKVAEVVQNNSPIE 120
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81
S + EC IC D P++T C H+FC PC+ + + + +CP+C+ I + L+
Sbjct: 750 SSGSDEECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLL 807
>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3
SV=2
Length = 259
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 13/141 (9%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLY------KWLHGHSNYRECPVCKATIEEEKLV 81
+ C IC A P+ T CGHLFC C+ WL S CP+C+ T+ L+
Sbjct: 85 DMYCPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAIS----CPICRQTV--TLLL 138
Query: 82 PLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGGFAPM 141
P++G S D S + R +GQ +H F M +GG M
Sbjct: 139 PVFGENDQSQDVVSLHQDISDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWM 198
Query: 142 AAARFGNFTLSAAFGGLIPPL 162
R L AF LI PL
Sbjct: 199 FRIRI-ILCLMGAFFYLISPL 218
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 11 RSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPV 70
R + ++ + + N C +C + + P T CGHLFCW C+ W S+ ECP+
Sbjct: 253 RGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPL 309
Query: 71 CKATIEEEKLVPL 83
C+ +KL+ L
Sbjct: 310 CREKFPPQKLIYL 322
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 3 SSFGESTSRSAQNPYSNNNSNSE----AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKW 58
S F + T S + + N GN +C++C + P T CGH+FCW C+ W
Sbjct: 224 SYFDQHTISSITDERDLEDKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSCINGW 283
Query: 59 LHGHSNYRECPVCKATIEEEKLVPL 83
S ECP+C+A K++ L
Sbjct: 284 ---TSKKSECPLCRAFSSPSKIILL 305
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83
C +C + + P T CGHLFCW C+ W S+ ECP+C+ +KL+ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCREKFPPQKLIYL 322
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus
musculus GN=Brca1 PE=1 SV=3
Length = 1812
Score = 50.4 bits (119), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
EC IC +L ++P+ T C H+FC C+ K L+ +CP+CK I + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77
+ +FEC++C L +P+ T CGH FC CL + L H+ Y CP+CK +++E
Sbjct: 473 DVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLD-HAPY--CPLCKESLKE 522
>sp|P40072|SLX8_YEAST E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SLX8 PE=1 SV=1
Length = 274
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRE---CPVCKATI 75
A ++ C ICF+ + ++TLCGH+FC PCL++ ++ R+ C +C++ +
Sbjct: 201 AKDYRCPICFEPPETALMTLCGHVFCCPCLFQMVNSSRTCRQFGHCALCRSKV 253
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79
A C +C +L +DP++ CGH FC C+ K G S++ CP CK +I + K
Sbjct: 141 AEELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFA-CPECKESITDRK 193
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 20 NNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
N+ ++ +F C ICFD+ ++ +T CGH FC+ C+++ L ++ CP C ++
Sbjct: 127 NSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNN---RCPKCNYVVD 180
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83
C +C + + T CGHLFCW C+ +W + + ECP+C+ +KLV L
Sbjct: 271 CTLCLEERRHSTATPCGHLFCWECITEWCNTKT---ECPLCREKFPPQKLVYL 320
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80
F C++C D P++T C H FC C+ + L S +CP+C+AT +E KL
Sbjct: 32 FRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDS---KCPLCRATDQESKL 80
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 11 RSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPV 70
+ A+ SN + +A + EC++C L +P+ T CGH FC CL + L ++ +CP+
Sbjct: 441 QGAKPDLSNPLGSFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNA---KCPL 497
Query: 71 CK 72
CK
Sbjct: 498 CK 499
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88
F+C C DP+ CGH FC CL + G + R C +C KL L
Sbjct: 157 FKCKKCHGFLSDPVSLWCGHTFCKLCLER---GRAADRRCALCGV-----KLSALMAASG 208
Query: 89 SSTDPRSKSIPG 100
+ PR P
Sbjct: 209 RARGPRRAGQPA 220
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 20 NNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76
N+ ++ +F C ICFD+ ++ +T CGH FC+ C+++ L ++ CP C ++
Sbjct: 125 NSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNN---RCPKCNYVVD 178
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88
C+IC + + CGH FC C+ WL HS +CP+CK ++ + K
Sbjct: 1237 LSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHS---KCPICKGFCSISEVYNF--KFK 1291
Query: 89 SSTDPRSKSI 98
+ST+ R K I
Sbjct: 1292 NSTEKREKEI 1301
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 14 QNPYSNNNSNSEAGNF----ECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECP 69
++ N +S AG+F C +C +L +DP++ CGH FC C+ K G S++ CP
Sbjct: 124 KDASKNASSLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSF-ACP 182
Query: 70 VCKATIEEEK 79
C+ +I + K
Sbjct: 183 ECRESITDRK 192
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 ESTSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYR 66
ES R N Y + +E+ C IC D+ + +T CGHL+C CL WL HS+
Sbjct: 1069 ESRRRYLTNLYEHIVLKAESHQI-CIICRDIIKQGFITTCGHLYCSFCLEAWLK-HSS-- 1124
Query: 67 ECPVCKATIEE 77
CP+CK + +
Sbjct: 1125 SCPMCKTKLNK 1135
>sp|Q96K19|RN170_HUMAN E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1
SV=2
Length = 258
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLY------KWLHGHSNYRECPVCKATIEEEKLV 81
+ C IC A P+ T CGHLFC C+ WL S CP+C+ T+ L+
Sbjct: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAIS----CPICRQTV--TLLL 137
Query: 82 PLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGGFAPM 141
++G S D + R +GQ +H F M +GG M
Sbjct: 138 TVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWM 197
Query: 142 AAARFGNFTLSAAFGGLIPPL 162
R L AF LI PL
Sbjct: 198 FRIRI-ILCLMGAFFYLISPL 217
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75
EC IC + Q P T CGH +C+ CL WL + CP C+ +
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLK---ESKSCPTCRQKL 126
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77
+FEC +C L +P+ T CGH FC CL + L H+ + CP+CK + E
Sbjct: 446 DFECALCMRLLFEPVTTPCGHTFCLKCLERCLD-HAPH--CPLCKDKLSE 492
>sp|Q8CBG9|RN170_MOUSE E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1
SV=1
Length = 286
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 31 CNICFDLAQDPIVTLCGHLFCWPCLY------KWLHGHSNYRECPVCKATIEEEKLVPLY 84
C IC A P+ T CGHLFC C+ WL S CP+C+ T+ L+ ++
Sbjct: 115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAIS----CPICRQTV--TLLLTVF 168
Query: 85 GRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPP---PEPSHFQHQHGFGFMGGLGGFAPM 141
G S D + VN NR +P + P+ +H F + +GG M
Sbjct: 169 GEDDQSQDV-IRLRQDVNDYNRRFSGQPRSIMERIMDLPTLL--RHAFREVFSVGGLFWM 225
Query: 142 AAARFGNFTLSAAFGGLIPPL 162
R L AF LI PL
Sbjct: 226 FRIRI-MLCLMGAFFYLISPL 245
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 15 NPYSNNNSNSEAGNFECNICFDL---AQDPIVTL--CGHLFCWPCLYKWLHGHSNYRECP 69
NP + S + C ICF+ A D ++ CGHLF + C+ KWL G + R+CP
Sbjct: 271 NPLLPSVSKDDEEGDTCTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQA--RKCP 328
Query: 70 VCKATIEEEKLVPLYGRGKSSTD 92
C + +V LY R + D
Sbjct: 329 QCNKKAKHSDIVVLYARTLRALD 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,454,670
Number of Sequences: 539616
Number of extensions: 4786333
Number of successful extensions: 18145
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 17472
Number of HSP's gapped (non-prelim): 1000
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)