Query 027023
Match_columns 229
No_of_seqs 300 out of 1945
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0823 Predicted E3 ubiquitin 100.0 3.1E-32 6.8E-37 231.6 10.3 178 24-229 43-230 (230)
2 PLN03208 E3 ubiquitin-protein 99.9 9.3E-27 2E-31 194.8 12.0 163 25-229 15-193 (193)
3 KOG2164 Predicted E3 ubiquitin 99.4 1E-14 2.2E-19 136.4 -2.8 138 28-166 186-330 (513)
4 KOG0317 Predicted E3 ubiquitin 99.4 4.1E-13 9E-18 118.0 4.0 60 20-82 231-290 (293)
5 PF15227 zf-C3HC4_4: zinc fing 99.3 9.2E-13 2E-17 85.1 3.2 41 31-71 1-42 (42)
6 smart00504 Ubox Modified RING 99.2 1.5E-11 3.2E-16 85.1 4.6 56 28-86 1-56 (63)
7 KOG0320 Predicted E3 ubiquitin 99.2 2.4E-11 5.3E-16 100.3 4.6 61 21-84 124-186 (187)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 5.2E-11 1.1E-15 79.4 3.2 47 27-76 1-48 (50)
9 PF13923 zf-C3HC4_2: Zinc fing 99.1 5E-11 1.1E-15 75.5 2.9 38 31-71 1-39 (39)
10 PF13639 zf-RING_2: Ring finge 99.1 4.3E-11 9.3E-16 77.6 2.1 40 30-72 2-44 (44)
11 PHA02929 N1R/p28-like protein; 99.0 1.6E-10 3.4E-15 100.7 4.1 49 25-76 171-227 (238)
12 TIGR00599 rad18 DNA repair pro 99.0 3.1E-10 6.8E-15 105.2 4.2 57 22-81 20-76 (397)
13 PF00097 zf-C3HC4: Zinc finger 99.0 5E-10 1.1E-14 71.2 3.2 40 31-71 1-41 (41)
14 PF04564 U-box: U-box domain; 99.0 3.8E-10 8.3E-15 81.1 2.9 59 27-87 3-61 (73)
15 COG5574 PEX10 RING-finger-cont 98.9 7.2E-10 1.6E-14 96.7 3.4 54 25-80 212-266 (271)
16 cd00162 RING RING-finger (Real 98.9 2.2E-09 4.8E-14 68.0 3.7 44 30-75 1-45 (45)
17 PHA02926 zinc finger-like prot 98.8 2.9E-09 6.2E-14 91.1 3.7 53 24-76 166-230 (242)
18 KOG4628 Predicted E3 ubiquitin 98.8 9E-09 2E-13 93.7 7.1 48 29-78 230-280 (348)
19 PF13445 zf-RING_UBOX: RING-ty 98.8 4.2E-09 9.1E-14 68.3 2.5 38 31-69 1-43 (43)
20 smart00184 RING Ring finger. E 98.7 9.6E-09 2.1E-13 62.8 3.3 39 31-71 1-39 (39)
21 PF12678 zf-rbx1: RING-H2 zinc 98.7 1.1E-08 2.4E-13 73.6 3.8 41 29-72 20-73 (73)
22 PF14634 zf-RING_5: zinc-RING 98.7 1E-08 2.2E-13 66.6 3.2 41 30-73 1-44 (44)
23 KOG0287 Postreplication repair 98.7 5.9E-09 1.3E-13 93.8 1.2 56 23-81 18-73 (442)
24 COG5243 HRD1 HRD ubiquitin lig 98.6 5.3E-08 1.1E-12 88.7 6.2 50 24-76 283-345 (491)
25 COG5432 RAD18 RING-finger-cont 98.5 3.9E-08 8.5E-13 87.0 2.7 55 23-80 20-74 (391)
26 KOG2177 Predicted E3 ubiquitin 98.5 3E-08 6.6E-13 85.0 1.2 47 23-72 8-54 (386)
27 COG5540 RING-finger-containing 98.5 7.9E-08 1.7E-12 85.6 2.8 48 27-76 322-372 (374)
28 KOG0802 E3 ubiquitin ligase [P 98.4 1E-07 2.2E-12 92.3 2.4 53 24-79 287-344 (543)
29 PF12861 zf-Apc11: Anaphase-pr 98.4 2.4E-07 5.2E-12 68.4 3.6 49 28-76 21-82 (85)
30 PF14835 zf-RING_6: zf-RING of 98.3 1.2E-07 2.7E-12 66.1 0.8 52 27-83 6-58 (65)
31 KOG0978 E3 ubiquitin ligase in 98.3 2.3E-07 5.1E-12 90.9 0.9 56 27-84 642-697 (698)
32 KOG4265 Predicted E3 ubiquitin 98.2 1E-06 2.3E-11 80.0 4.4 57 24-85 286-343 (349)
33 KOG4172 Predicted E3 ubiquitin 98.2 2.8E-07 6.1E-12 62.2 -0.0 52 28-83 7-59 (62)
34 TIGR00570 cdk7 CDK-activating 98.2 1.4E-06 3.1E-11 78.3 4.3 52 27-80 2-58 (309)
35 KOG0824 Predicted E3 ubiquitin 98.0 3.1E-06 6.7E-11 75.4 2.5 53 26-80 5-57 (324)
36 KOG4159 Predicted E3 ubiquitin 98.0 2.8E-06 6.1E-11 79.1 2.2 52 23-77 79-130 (398)
37 KOG0311 Predicted E3 ubiquitin 97.9 1.1E-06 2.3E-11 79.8 -2.3 50 25-76 40-90 (381)
38 KOG1785 Tyrosine kinase negati 97.8 1E-05 2.2E-10 74.6 2.7 53 29-82 370-422 (563)
39 PF11789 zf-Nse: Zinc-finger o 97.8 1.3E-05 2.8E-10 55.1 2.3 45 25-70 8-53 (57)
40 PF11793 FANCL_C: FANCL C-term 97.8 8.6E-06 1.9E-10 58.1 1.0 50 28-77 2-67 (70)
41 KOG0297 TNF receptor-associate 97.8 1.6E-05 3.5E-10 74.1 3.1 57 23-82 16-73 (391)
42 KOG1002 Nucleotide excision re 97.8 1.1E-05 2.5E-10 76.6 1.9 56 24-79 532-589 (791)
43 KOG2660 Locus-specific chromos 97.8 2.4E-06 5.2E-11 76.9 -2.5 51 25-78 12-63 (331)
44 KOG1734 Predicted RING-contain 97.7 1.1E-05 2.4E-10 71.0 1.5 57 23-80 219-285 (328)
45 KOG0804 Cytoplasmic Zn-finger 97.7 1.6E-05 3.5E-10 74.2 2.6 50 22-76 169-222 (493)
46 COG5152 Uncharacterized conser 97.7 1.3E-05 2.8E-10 67.8 1.6 48 26-76 194-241 (259)
47 KOG2879 Predicted E3 ubiquitin 97.7 3.2E-05 7E-10 68.2 4.1 50 26-76 237-287 (298)
48 KOG0828 Predicted E3 ubiquitin 97.7 1.9E-05 4.2E-10 74.5 2.0 50 25-76 568-634 (636)
49 KOG1645 RING-finger-containing 97.6 1.2E-05 2.5E-10 74.4 -0.3 61 27-88 3-68 (463)
50 smart00744 RINGv The RING-vari 97.5 8.2E-05 1.8E-09 49.5 3.1 42 30-72 1-49 (49)
51 KOG0826 Predicted E3 ubiquitin 97.5 7.1E-05 1.5E-09 67.5 3.6 60 22-84 294-354 (357)
52 KOG4692 Predicted E3 ubiquitin 97.5 0.0001 2.2E-09 67.3 3.7 53 21-76 415-467 (489)
53 KOG1039 Predicted E3 ubiquitin 97.4 8.5E-05 1.9E-09 68.1 2.6 56 26-83 159-226 (344)
54 KOG0827 Predicted E3 ubiquitin 97.4 8.8E-05 1.9E-09 68.3 2.3 54 28-81 4-61 (465)
55 COG5219 Uncharacterized conser 97.4 5.1E-05 1.1E-09 76.4 0.5 51 25-76 1466-1523(1525)
56 COG5222 Uncharacterized conser 97.3 0.00013 2.8E-09 65.3 2.5 58 28-87 274-333 (427)
57 KOG1813 Predicted E3 ubiquitin 97.3 7.1E-05 1.5E-09 66.7 0.7 46 28-76 241-286 (313)
58 KOG3039 Uncharacterized conser 97.3 0.00023 4.9E-09 62.2 3.4 59 27-88 220-282 (303)
59 COG5194 APC11 Component of SCF 97.2 0.00028 6.2E-09 51.3 2.5 29 45-76 53-81 (88)
60 KOG1571 Predicted E3 ubiquitin 97.0 0.00036 7.9E-09 63.7 2.2 49 22-76 299-347 (355)
61 KOG4275 Predicted E3 ubiquitin 97.0 0.00013 2.9E-09 64.9 -1.1 42 28-76 300-342 (350)
62 KOG1493 Anaphase-promoting com 96.8 0.00045 9.7E-09 49.9 0.9 47 30-76 22-81 (84)
63 KOG0825 PHD Zn-finger protein 96.8 0.00024 5.2E-09 70.4 -0.9 54 28-84 123-179 (1134)
64 PF05290 Baculo_IE-1: Baculovi 96.6 0.0016 3.5E-08 51.8 3.0 52 27-78 79-134 (140)
65 PF07800 DUF1644: Protein of u 96.6 0.0022 4.8E-08 52.5 3.7 57 27-83 1-98 (162)
66 KOG1001 Helicase-like transcri 96.6 0.00071 1.5E-08 67.2 0.7 53 29-83 455-507 (674)
67 PF04641 Rtf2: Rtf2 RING-finge 96.5 0.0036 7.7E-08 55.3 4.6 61 24-88 109-173 (260)
68 PF14447 Prok-RING_4: Prokaryo 96.0 0.0033 7.2E-08 42.7 1.4 48 27-79 6-53 (55)
69 KOG2930 SCF ubiquitin ligase, 95.9 0.0043 9.4E-08 47.4 1.7 28 45-75 80-107 (114)
70 KOG4739 Uncharacterized protei 95.8 0.0029 6.3E-08 55.1 0.3 50 29-83 4-55 (233)
71 COG5236 Uncharacterized conser 95.7 0.01 2.2E-07 54.3 3.8 58 18-76 51-108 (493)
72 KOG1941 Acetylcholine receptor 95.5 0.0047 1E-07 57.3 0.6 49 27-76 364-416 (518)
73 KOG1814 Predicted E3 ubiquitin 95.4 0.0075 1.6E-07 56.2 1.7 48 26-73 182-237 (445)
74 PHA03096 p28-like protein; Pro 95.3 0.0086 1.9E-07 53.8 1.6 46 29-74 179-232 (284)
75 KOG3970 Predicted E3 ubiquitin 95.1 0.019 4.2E-07 49.7 3.2 50 27-76 49-105 (299)
76 PHA02825 LAP/PHD finger-like p 95.1 0.025 5.4E-07 46.5 3.7 51 25-77 5-60 (162)
77 PF08746 zf-RING-like: RING-li 94.9 0.032 6.9E-07 36.0 3.1 40 31-71 1-43 (43)
78 KOG4367 Predicted Zn-finger pr 94.9 0.015 3.2E-07 54.8 1.9 36 26-61 2-37 (699)
79 PF14570 zf-RING_4: RING/Ubox 94.8 0.021 4.6E-07 37.8 2.0 43 31-75 1-47 (48)
80 KOG4185 Predicted E3 ubiquitin 94.8 0.02 4.2E-07 51.1 2.5 46 28-75 3-54 (296)
81 KOG3002 Zn finger protein [Gen 94.5 0.039 8.4E-07 49.9 3.8 47 24-76 44-91 (299)
82 PHA02862 5L protein; Provision 94.4 0.033 7.2E-07 45.1 2.7 48 29-78 3-55 (156)
83 KOG2817 Predicted E3 ubiquitin 93.9 0.047 1E-06 50.7 2.9 51 27-77 333-386 (394)
84 KOG4445 Uncharacterized conser 93.8 0.019 4E-07 51.7 0.3 52 26-77 113-187 (368)
85 KOG4362 Transcriptional regula 93.8 0.014 2.9E-07 57.8 -0.7 53 27-79 20-72 (684)
86 KOG3800 Predicted E3 ubiquitin 93.6 0.054 1.2E-06 48.5 2.8 46 30-77 2-52 (300)
87 PF02891 zf-MIZ: MIZ/SP-RING z 93.3 0.054 1.2E-06 36.0 1.7 46 28-74 2-50 (50)
88 KOG0298 DEAD box-containing he 93.0 0.024 5.3E-07 59.3 -0.5 45 26-73 1151-1196(1394)
89 KOG1100 Predicted E3 ubiquitin 92.8 0.055 1.2E-06 46.5 1.6 39 31-76 161-200 (207)
90 PF10367 Vps39_2: Vacuolar sor 92.8 0.05 1.1E-06 40.7 1.1 32 25-56 75-108 (109)
91 COG5175 MOT2 Transcriptional r 92.7 0.075 1.6E-06 48.7 2.3 50 29-80 15-68 (480)
92 KOG1428 Inhibitor of type V ad 92.6 0.06 1.3E-06 57.3 1.7 53 25-77 3483-3545(3738)
93 KOG2114 Vacuolar assembly/sort 92.4 0.068 1.5E-06 54.0 1.8 43 27-75 839-882 (933)
94 PF12906 RINGv: RING-variant d 92.0 0.095 2.1E-06 34.3 1.6 40 31-71 1-47 (47)
95 PF05883 Baculo_RING: Baculovi 91.9 0.066 1.4E-06 42.9 0.8 33 28-60 26-67 (134)
96 PF10272 Tmpp129: Putative tra 91.8 0.19 4E-06 46.6 3.8 35 46-80 311-355 (358)
97 KOG3161 Predicted E3 ubiquitin 91.8 0.056 1.2E-06 53.1 0.4 44 25-74 8-55 (861)
98 COG5183 SSM4 Protein involved 91.3 0.18 3.9E-06 51.0 3.3 56 24-80 8-70 (1175)
99 KOG3579 Predicted E3 ubiquitin 91.2 0.22 4.8E-06 44.7 3.4 37 26-62 266-306 (352)
100 KOG3268 Predicted E3 ubiquitin 90.7 0.18 4E-06 42.3 2.4 34 44-77 188-229 (234)
101 KOG3039 Uncharacterized conser 90.3 0.2 4.4E-06 44.1 2.4 36 27-62 42-77 (303)
102 KOG1952 Transcription factor N 90.2 0.18 4E-06 51.0 2.3 51 26-76 189-247 (950)
103 KOG1940 Zn-finger protein [Gen 90.1 0.19 4.1E-06 45.0 2.0 44 27-73 157-204 (276)
104 KOG2932 E3 ubiquitin ligase in 89.8 0.14 3.1E-06 46.4 1.0 42 30-76 92-134 (389)
105 COG5220 TFB3 Cdk activating ki 89.0 0.094 2E-06 46.0 -0.6 50 25-76 7-64 (314)
106 KOG3899 Uncharacterized conser 88.2 0.26 5.7E-06 44.3 1.6 35 46-80 325-369 (381)
107 KOG1815 Predicted E3 ubiquitin 87.6 0.47 1E-05 45.0 3.1 57 24-80 66-130 (444)
108 KOG3053 Uncharacterized conser 87.6 0.37 7.9E-06 42.7 2.1 55 22-76 14-82 (293)
109 KOG2034 Vacuolar sorting prote 87.2 0.32 7E-06 49.5 1.8 36 25-60 814-851 (911)
110 COG5109 Uncharacterized conser 84.2 0.66 1.4E-05 42.3 2.1 51 26-76 334-387 (396)
111 KOG1812 Predicted E3 ubiquitin 83.5 0.8 1.7E-05 42.9 2.4 51 26-76 144-203 (384)
112 KOG0825 PHD Zn-finger protein 83.0 1.2 2.6E-05 45.1 3.5 50 27-76 95-154 (1134)
113 PF03854 zf-P11: P-11 zinc fin 82.6 0.51 1.1E-05 31.2 0.5 42 31-77 5-47 (50)
114 KOG3113 Uncharacterized conser 82.1 1.7 3.6E-05 38.5 3.7 56 26-86 109-168 (293)
115 KOG1609 Protein involved in mR 79.8 2.3 5.1E-05 37.6 4.0 51 26-77 76-135 (323)
116 COG0068 HypF Hydrogenase matur 78.0 1.5 3.3E-05 44.0 2.3 54 22-75 95-183 (750)
117 PF14569 zf-UDP: Zinc-binding 75.9 4.2 9.2E-05 29.6 3.5 52 27-80 8-66 (80)
118 PLN02638 cellulose synthase A 75.1 5.6 0.00012 41.8 5.5 51 27-79 16-73 (1079)
119 PLN02189 cellulose synthase 75.1 4.6 9.9E-05 42.3 4.9 54 27-82 33-93 (1040)
120 PLN02436 cellulose synthase A 72.8 3.9 8.4E-05 43.0 3.7 53 28-82 36-95 (1094)
121 PLN02400 cellulose synthase 71.4 5.9 0.00013 41.7 4.7 53 28-82 36-95 (1085)
122 KOG0802 E3 ubiquitin ligase [P 69.9 5.3 0.00011 39.0 3.8 50 23-79 474-523 (543)
123 PF07191 zinc-ribbons_6: zinc- 68.6 0.3 6.6E-06 34.8 -3.7 41 28-76 1-41 (70)
124 KOG4718 Non-SMC (structural ma 68.3 2.6 5.7E-05 36.4 1.2 44 27-73 180-224 (235)
125 PLN02915 cellulose synthase A 68.1 5.8 0.00013 41.6 3.8 51 27-79 14-71 (1044)
126 KOG2068 MOT2 transcription fac 66.1 4.7 0.0001 36.9 2.4 46 28-76 249-298 (327)
127 KOG0827 Predicted E3 ubiquitin 63.9 0.6 1.3E-05 43.6 -3.7 47 28-77 196-246 (465)
128 COG3813 Uncharacterized protei 62.8 5.1 0.00011 28.8 1.6 32 47-83 28-59 (84)
129 KOG0289 mRNA splicing factor [ 61.3 7.1 0.00015 37.2 2.7 54 30-86 2-56 (506)
130 KOG0309 Conserved WD40 repeat- 61.3 4.6 0.0001 41.0 1.6 39 29-70 1029-1069(1081)
131 PF06844 DUF1244: Protein of u 60.9 5 0.00011 28.3 1.3 13 49-61 11-23 (68)
132 PF14446 Prok-RING_1: Prokaryo 60.3 12 0.00025 25.4 2.9 30 27-56 4-37 (54)
133 PF04216 FdhE: Protein involve 58.7 2.2 4.8E-05 38.1 -1.0 47 25-74 169-220 (290)
134 PF04710 Pellino: Pellino; In 54.7 4.1 8.9E-05 38.3 0.0 47 27-76 276-339 (416)
135 PLN02195 cellulose synthase A 52.2 16 0.00035 38.2 3.8 48 27-76 5-59 (977)
136 PF05605 zf-Di19: Drought indu 51.3 8.1 0.00017 25.6 1.0 42 27-76 1-42 (54)
137 KOG1812 Predicted E3 ubiquitin 51.2 7.7 0.00017 36.3 1.2 41 28-71 306-351 (384)
138 TIGR01562 FdhE formate dehydro 50.9 6.6 0.00014 35.7 0.7 46 26-74 182-233 (305)
139 PRK03564 formate dehydrogenase 50.1 7.6 0.00016 35.4 1.0 46 25-73 184-234 (309)
140 KOG1815 Predicted E3 ubiquitin 49.0 9.3 0.0002 36.3 1.5 41 39-79 177-240 (444)
141 PF14353 CpXC: CpXC protein 48.3 14 0.00031 28.6 2.2 48 29-76 2-49 (128)
142 PF10235 Cript: Microtubule-as 47.9 13 0.00027 27.9 1.7 37 28-76 44-80 (90)
143 KOG2979 Protein involved in DN 47.8 9.9 0.00021 33.7 1.3 44 28-72 176-220 (262)
144 KOG2789 Putative Zn-finger pro 47.3 19 0.00042 34.0 3.1 56 27-82 73-151 (482)
145 PF10571 UPF0547: Uncharacteri 47.2 10 0.00023 21.7 0.9 8 31-38 3-10 (26)
146 KOG2231 Predicted E3 ubiquitin 46.1 15 0.00033 36.9 2.4 49 30-78 2-54 (669)
147 KOG2113 Predicted RNA binding 46.0 18 0.00039 33.2 2.6 50 27-83 342-392 (394)
148 PF06906 DUF1272: Protein of u 44.8 20 0.00043 24.5 2.1 43 29-76 6-52 (57)
149 KOG4185 Predicted E3 ubiquitin 44.4 4.6 0.0001 35.8 -1.3 46 27-74 206-265 (296)
150 PF01363 FYVE: FYVE zinc finge 44.0 5.6 0.00012 27.4 -0.7 33 26-58 7-43 (69)
151 smart00132 LIM Zinc-binding do 43.8 17 0.00038 21.2 1.6 35 30-75 1-37 (39)
152 PF10497 zf-4CXXC_R1: Zinc-fin 42.8 30 0.00066 26.4 3.2 29 47-75 37-71 (105)
153 KOG0269 WD40 repeat-containing 42.7 22 0.00049 36.1 3.0 44 30-76 781-828 (839)
154 TIGR00143 hypF [NiFe] hydrogen 42.0 13 0.00028 37.7 1.3 53 24-76 64-151 (711)
155 smart00064 FYVE Protein presen 41.8 23 0.00049 24.2 2.2 34 27-60 9-46 (68)
156 PHA03240 envelope glycoprotein 41.7 24 0.00051 30.7 2.6 21 209-229 211-231 (258)
157 PF10146 zf-C4H2: Zinc finger- 40.2 20 0.00043 31.3 2.0 25 49-76 195-219 (230)
158 KOG2169 Zn-finger transcriptio 40.2 18 0.0004 36.1 2.0 53 27-80 305-360 (636)
159 KOG3842 Adaptor protein Pellin 38.8 40 0.00087 31.1 3.8 51 25-76 338-414 (429)
160 smart00249 PHD PHD zinc finger 38.5 15 0.00031 22.3 0.7 26 31-56 2-30 (47)
161 PF04710 Pellino: Pellino; In 38.5 10 0.00022 35.7 0.0 50 27-76 327-401 (416)
162 PRK09174 F0F1 ATP synthase sub 38.5 41 0.00088 28.7 3.6 21 208-228 50-70 (204)
163 smart00647 IBR In Between Ring 38.5 6.1 0.00013 26.3 -1.2 14 45-58 45-58 (64)
164 KOG3842 Adaptor protein Pellin 34.6 17 0.00036 33.5 0.7 53 27-85 289-358 (429)
165 PF05399 EVI2A: Ectropic viral 34.3 26 0.00057 30.3 1.8 20 210-229 129-148 (227)
166 KOG4451 Uncharacterized conser 34.2 24 0.00053 30.9 1.6 25 49-76 250-274 (286)
167 cd00065 FYVE FYVE domain; Zinc 33.8 28 0.00061 22.7 1.6 31 29-59 3-37 (57)
168 PF15616 TerY-C: TerY-C metal 33.8 26 0.00056 28.0 1.6 42 26-76 75-116 (131)
169 KOG0824 Predicted E3 ubiquitin 33.3 46 0.00099 30.4 3.2 49 25-76 102-151 (324)
170 COG3492 Uncharacterized protei 33.0 20 0.00042 27.0 0.7 15 49-63 42-56 (104)
171 PF04423 Rad50_zn_hook: Rad50 32.8 13 0.00028 24.6 -0.2 13 67-79 22-34 (54)
172 KOG1829 Uncharacterized conser 31.9 18 0.00038 35.8 0.4 24 44-73 535-558 (580)
173 PF07975 C1_4: TFIIH C1-like d 31.2 36 0.00077 22.7 1.7 25 45-72 26-50 (51)
174 PF13719 zinc_ribbon_5: zinc-r 29.7 29 0.00062 21.3 1.0 10 30-39 4-13 (37)
175 CHL00038 psbL photosystem II p 29.2 63 0.0014 20.2 2.4 17 211-227 13-29 (38)
176 KOG1074 Transcriptional repres 29.1 58 0.0013 33.7 3.4 20 22-41 599-618 (958)
177 COG5627 MMS21 DNA repair prote 28.9 32 0.0007 30.3 1.5 48 28-76 189-239 (275)
178 COG4306 Uncharacterized protei 28.8 53 0.0011 26.3 2.5 27 49-81 29-55 (160)
179 PF00412 LIM: LIM domain; Int 28.3 20 0.00043 23.3 0.0 37 31-78 1-39 (58)
180 smart00734 ZnF_Rad18 Rad18-lik 27.6 25 0.00054 19.9 0.4 12 66-77 2-13 (26)
181 PF06716 DUF1201: Protein of u 27.1 83 0.0018 20.7 2.8 20 209-228 7-26 (54)
182 PF10854 DUF2649: Protein of u 27.0 68 0.0015 22.3 2.5 24 206-229 34-57 (67)
183 PRK04023 DNA polymerase II lar 25.5 61 0.0013 34.3 2.9 50 23-77 621-675 (1121)
184 PRK06870 secG preprotein trans 25.3 1.7E+02 0.0036 20.7 4.5 22 206-227 47-68 (76)
185 PF03908 Sec20: Sec20; InterP 24.7 86 0.0019 22.9 3.0 21 208-228 69-89 (92)
186 PF10083 DUF2321: Uncharacteri 24.6 43 0.00093 27.6 1.4 27 47-79 27-53 (158)
187 COG4647 AcxC Acetone carboxyla 24.5 37 0.00081 27.3 1.0 21 33-53 62-82 (165)
188 KOG0956 PHD finger protein AF1 24.3 50 0.0011 33.5 2.0 29 42-73 42-70 (900)
189 PF13901 DUF4206: Domain of un 23.9 57 0.0012 27.6 2.1 38 28-73 152-197 (202)
190 PF07123 PsbW: Photosystem II 23.7 61 0.0013 26.1 2.1 36 172-229 87-122 (138)
191 KOG1356 Putative transcription 23.7 24 0.00051 36.3 -0.3 32 28-59 229-262 (889)
192 PF12773 DZR: Double zinc ribb 23.5 68 0.0015 20.4 2.0 28 49-76 13-40 (50)
193 KOG3726 Uncharacterized conser 23.1 43 0.00094 33.7 1.3 39 29-73 655-697 (717)
194 PF02009 Rifin_STEVOR: Rifin/s 22.9 65 0.0014 29.3 2.4 16 213-228 264-279 (299)
195 PF04272 Phospholamban: Phosph 22.8 1.9E+02 0.004 19.0 3.8 15 213-227 34-48 (52)
196 KOG4218 Nuclear hormone recept 22.8 78 0.0017 29.6 2.8 16 25-40 12-27 (475)
197 KOG0006 E3 ubiquitin-protein l 22.7 61 0.0013 30.0 2.1 36 25-60 218-255 (446)
198 TIGR02098 MJ0042_CXXC MJ0042 f 22.5 37 0.00079 20.5 0.5 11 65-75 25-35 (38)
199 PF03908 Sec20: Sec20; InterP 22.5 1.1E+02 0.0023 22.4 3.1 24 206-229 63-86 (92)
200 KOG2042 Ubiquitin fusion degra 22.3 92 0.002 32.7 3.5 57 27-86 869-926 (943)
201 COG4098 comFA Superfamily II D 22.3 37 0.00079 31.9 0.6 32 25-56 36-68 (441)
202 PLN00077 photosystem II reacti 22.2 83 0.0018 24.8 2.5 37 171-229 75-111 (128)
203 TIGR01294 P_lamban phospholamb 22.2 1.8E+02 0.004 19.0 3.7 16 213-228 34-49 (52)
204 KOG0812 SNARE protein SED5/Syn 21.8 76 0.0017 28.8 2.5 17 212-228 293-309 (311)
205 PLN00092 photosystem I reactio 21.8 85 0.0018 25.0 2.5 37 171-229 85-121 (137)
206 PF01485 IBR: IBR domain; Int 21.6 11 0.00024 24.9 -2.2 14 45-58 45-58 (64)
207 KOG2066 Vacuolar assembly/sort 21.4 36 0.00079 34.8 0.5 34 27-60 783-823 (846)
208 PF10186 Atg14: UV radiation r 20.9 64 0.0014 28.0 1.9 20 30-57 1-20 (302)
209 cd00350 rubredoxin_like Rubred 20.9 63 0.0014 19.1 1.3 10 65-74 17-26 (33)
210 KOG4443 Putative transcription 20.4 51 0.0011 33.1 1.2 51 25-75 15-72 (694)
No 1
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-32 Score=231.63 Aligned_cols=178 Identities=43% Similarity=0.865 Sum_probs=120.8
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCCC-CCCCCCCCCCCCC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVN 102 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~~-~~d~~~~~~~~~~ 102 (229)
.+...++|+||+|..+|||++.|||+|||.||++|++.+.+++.||+||..|+.++++|+|++++. .+++++++
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~~----- 117 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKKD----- 117 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCCCccccc-----
Confidence 366789999999999999999999999999999999998889999999999999999999999984 55655554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCcccCCCCCCcccccccccceeechhhc-------ccCcccccccccCCCCCCC
Q 027023 103 IPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGGFAPMAAARFGNFTLSAAFG-------GLIPPLFNLQVHGFPDPTM 175 (229)
Q Consensus 103 ~p~Rps~~r~~~~~~~d~~~~~~~~~~~~~~~~~G~~~~~~~R~~~~~~s~~~g-------~~~~~~f~~~~~~~~~~~~ 175 (229)
+|+||.++|.++.+..-.+. ..++++...-..+.... -.+.+|+++| ++||.+|...+.|.-
T Consensus 118 vP~RP~~~R~e~~~p~~~~~--~~~g~r~~g~~~~~~~~-----~~f~~s~~i~~~~~~v~~~~p~~~~~~lf~~~---- 186 (230)
T KOG0823|consen 118 VPPRPAGQRYESKRPTPQNR--GNHGFRFFGFRLGEESS-----NRFMYSFGIGLFGDPVMGLFPFGLYTRLFGTD---- 186 (230)
T ss_pred CCCCCCCccccccCCCCccc--cccccccccccccccCC-----cceeEEeecccCCCceeeeccccceeeecCCC----
Confidence 89999999987655421111 11233322111111000 1234444443 455555544433221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 176 YGPAASFPYGFTNSFHGGHAHGYPQ--HTGQGQQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
..++ + .+.+..+. ..++.|+|++|+++|+|+++++++||+++
T Consensus 187 ----~~~~-~-------~~~~~~~~~~~~r~~q~e~~ls~~f~~~~~~~~~~l~~~ 230 (230)
T KOG0823|consen 187 ----ETFP-A-------DTPRPSPARPLGRQMQRENSLSRVFLFLACFFVSWLLVI 230 (230)
T ss_pred ----CCcc-c-------cCCCCCCCccccccchhhcccccchhhhhhhheeeeeeC
Confidence 1122 1 11122222 34555779999999999999999999864
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.94 E-value=9.3e-27 Score=194.84 Aligned_cols=163 Identities=33% Similarity=0.652 Sum_probs=108.3
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC-------------CCCCCCCCccccccccccccccCCCCCCC
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH-------------SNYRECPVCKATIEEEKLVPLYGRGKSST 91 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~-------------s~~~~CPvCR~~v~~~~l~p~~~~~~~~~ 91 (229)
..++++|+||++.+++|++++|||.||+.||.+|+... .....||+||..++..+++|+|+++...
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~~- 93 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKA- 93 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCCC-
Confidence 34679999999999999999999999999999998632 1346899999999999999999998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccCCCCCCcccccccccceeechhhcccCcccccccccCCC
Q 027023 92 DPRSKSIPGVNIPNRPTGQRPETAPPPEPSHFQHQHGFGFMGGLGGFAPMAAARFGNFTLSAAFGGLIPPLFNLQVHGFP 171 (229)
Q Consensus 92 d~~~~~~~~~~~p~Rps~~r~~~~~~~d~~~~~~~~~~~~~~~~~G~~~~~~~R~~~~~~s~~~g~~~~~~f~~~~~~~~ 171 (229)
...+..+|+||.+.+... ++ . .++.. .- . ... ..+ +++. ++.|++
T Consensus 94 -----~~~~~~iP~rp~~~~~~~-~~-----~-~~~~~-~~---~-----------~~~--~~~-~~~~-----p~~g~~ 138 (193)
T PLN03208 94 -----PQSGSNVPSRPSGPVYDL-RG-----V-GQRLG-EG---E-----------SQR--YMY-RMPD-----PVMGVV 138 (193)
T ss_pred -----CCCCCCCCcCCCCCccCC-CC-----c-ccccc-cc---c-----------cce--eee-ccCC-----ccccch
Confidence 233566899999876552 11 0 11111 00 0 000 012 2222 144555
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 172 DPTMYGPAASFPYGFT--NSFHGGHAHGYPQHTGQG-QQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 172 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
+.++|+. .||-+ |.| .+....|+.++|+ |+|++|+|+++||++||++|||+|
T Consensus 139 ~~~~~~r----~fg~~~~~~~--~~~~~~~r~r~~~~q~~~sl~r~~~f~~c~~~~~~~~f 193 (193)
T PLN03208 139 CEMVYRR----LFGESSSNMA--PYRDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193 (193)
T ss_pred hhhhhhh----hhCCcccccc--ccccCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC
Confidence 6555553 12211 111 0011135556666 559999999999999999999998
No 3
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1e-14 Score=136.41 Aligned_cols=138 Identities=19% Similarity=0.369 Sum_probs=104.8
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhC--CCCCCCCCccccccccccccccCCCCCCCCCCCCCCCC---CC
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATIEEEKLVPLYGRGKSSTDPRSKSIPG---VN 102 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v~~~~l~p~~~~~~~~~d~~~~~~~~---~~ 102 (229)
+..||||++...-|+.+.|||+||++||.+||... .....||+|+..|..++|.|++.......+.......+ .+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~~~ 265 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGIPD 265 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCCCc
Confidence 78899999999999999999999999999999854 35679999999999888998877665433332222222 26
Q ss_pred CCCCCCCC--CCCCCCCCCCCCCccCCCCcccCCCCCCcccccccccceeechhhcccCccccccc
Q 027023 103 IPNRPTGQ--RPETAPPPEPSHFQHQHGFGFMGGLGGFAPMAAARFGNFTLSAAFGGLIPPLFNLQ 166 (229)
Q Consensus 103 ~p~Rps~~--r~~~~~~~d~~~~~~~~~~~~~~~~~G~~~~~~~R~~~~~~s~~~g~~~~~~f~~~ 166 (229)
++.++++. +..+....|++++ .+..++.++++..+..+...+++.+.+....+.+-+.-+..+
T Consensus 266 ~~r~F~~d~~r~~p~fl~dl~~~-a~~~i~~~~~~~~l~i~~~~~i~~v~i~~~~~~~~~~~~~~q 330 (513)
T KOG2164|consen 266 YNRRFSGDPARFVPDFLMDLPTY-ARINIRNMFNNHILTIVDQVCIAAVFICQYLSFLLPRRMVPQ 330 (513)
T ss_pred cccceecCcccccHHHHHhHHHH-HHHHHHHhhcccceeehhhHhHHHHHHHHHhcccchhhhcch
Confidence 78888887 4444445677877 777777788889999999999999887766655555444444
No 4
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.1e-13 Score=118.04 Aligned_cols=60 Identities=30% Similarity=0.939 Sum_probs=51.6
Q ss_pred CCCCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 20 NNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 20 ~~~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
++....+....|.+|++...+|..|+|||+|||.||..|...+. .||+||..+...+++-
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~---eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA---ECPLCREKFQPSKVIC 290 (293)
T ss_pred CCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc---CCCcccccCCCcceee
Confidence 34444566789999999999999999999999999999999554 8999999998777653
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.33 E-value=9.2e-13 Score=85.10 Aligned_cols=41 Identities=44% Similarity=1.018 Sum_probs=32.6
Q ss_pred ccccccCCCCcEEccCCCccChhHHHHHHhhCCCC-CCCCCc
Q 027023 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNY-RECPVC 71 (229)
Q Consensus 31 C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~-~~CPvC 71 (229)
|+||++.+++|+.++|||.||..||.+|++..... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999965433 689987
No 6
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.21 E-value=1.5e-11 Score=85.05 Aligned_cols=56 Identities=25% Similarity=0.529 Sum_probs=49.8
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
++.|+||.+.+.+|++++|||+||..||.+|++. ...||+|+..++.++++++...
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~~~l~~~~~l 56 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---HGTDPVTGQPLTHEDLIPNLAL 56 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---CCCCCCCcCCCChhhceeCHHH
Confidence 3679999999999999999999999999999986 3489999999988888887544
No 7
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.4e-11 Score=100.29 Aligned_cols=61 Identities=30% Similarity=0.841 Sum_probs=50.0
Q ss_pred CCCCCCCCccccccccCCCCc--EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 21 NSNSEAGNFECNICFDLAQDP--IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~~~p--v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
+....+..+.|+||++...+. +.+.|||+||..||...++. ...||+|++.|+.+.+.++|
T Consensus 124 ~~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~---~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 124 DPLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN---TNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccccccccCCCceecchhhccccccccchhHHHHHHHHHHHh---CCCCCCcccccchhhheecc
Confidence 334455668999999999754 55899999999999999994 44999999999888777765
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.11 E-value=5.2e-11 Score=79.35 Aligned_cols=47 Identities=40% Similarity=1.005 Sum_probs=40.6
Q ss_pred CCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
++..|.||++...+.+.++|||. ||..|+.+|++ ....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK---RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH---TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc---cCCCCCcCChhhc
Confidence 35789999999999999999999 99999999999 4559999999886
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.11 E-value=5e-11 Score=75.49 Aligned_cols=38 Identities=53% Similarity=1.234 Sum_probs=32.9
Q ss_pred ccccccCCCCc-EEccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 31 CNICFDLAQDP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 31 C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
|+||++.+.+| +.++|||+||..|+.+|++. ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK---NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence 89999999999 67999999999999999995 3599988
No 10
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.09 E-value=4.3e-11 Score=77.60 Aligned_cols=40 Identities=38% Similarity=1.061 Sum_probs=34.0
Q ss_pred cccccccCCC---CcEEccCCCccChhHHHHHHhhCCCCCCCCCcc
Q 027023 30 ECNICFDLAQ---DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72 (229)
Q Consensus 30 ~C~ICld~~~---~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR 72 (229)
+|+||++.+. ..+.++|||.||..||.+|++.+ .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---CcCCccC
Confidence 6999999884 45678999999999999999964 4999997
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.04 E-value=1.6e-10 Score=100.65 Aligned_cols=49 Identities=33% Similarity=0.899 Sum_probs=41.0
Q ss_pred CCCCccccccccCCCCc--------EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDP--------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p--------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...+.+|+||++.+.++ +.++|+|.||..||.+|++.+ .+||+||..+.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~---~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK---NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC---CCCCCCCCEee
Confidence 34568999999987653 457899999999999999954 49999999877
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=3.1e-10 Score=105.23 Aligned_cols=57 Identities=33% Similarity=0.759 Sum_probs=48.7
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
....+..+.|+||++.+.+|++++|||.||..||..|+... ..||+|+..+...++.
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~---~~CP~Cr~~~~~~~Lr 76 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ---PKCPLCRAEDQESKLR 76 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC---CCCCCCCCccccccCc
Confidence 34466789999999999999999999999999999999853 4899999988765543
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.96 E-value=5e-10 Score=71.22 Aligned_cols=40 Identities=48% Similarity=1.231 Sum_probs=36.4
Q ss_pred ccccccCCCCcE-EccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 31 CNICFDLAQDPI-VTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 31 C~ICld~~~~pv-~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
|+||++.+.+++ .++|||.||..||.+|++. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence 899999999999 8999999999999999996 346789988
No 14
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.96 E-value=3.8e-10 Score=81.10 Aligned_cols=59 Identities=25% Similarity=0.506 Sum_probs=47.5
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCC
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG 87 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~ 87 (229)
+.+.|+|+.+++.+||+++|||+|+..||.+|++. +...||.|++.+..++++|+....
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~~~l~pn~~Lk 61 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ--NGGTDPFTRQPLSESDLIPNRALK 61 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT--TSSB-TTT-SB-SGGGSEE-HHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc--CCCCCCCCCCcCCcccceECHHHH
Confidence 57899999999999999999999999999999996 246999999999999999886553
No 15
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.2e-10 Score=96.67 Aligned_cols=54 Identities=33% Similarity=0.913 Sum_probs=46.1
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHH-HHhhCCCCCCCCCcccccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYK-WLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~-wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
...++.|.||++.+..|..++|||+|||.||.. |-+.+. ..||+||+.+..+++
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~--~~CplCRak~~pk~v 266 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY--EFCPLCRAKVYPKKV 266 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhcc--ccCchhhhhccchhh
Confidence 356899999999999999999999999999999 777432 359999998876665
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=2.2e-09 Score=68.02 Aligned_cols=44 Identities=45% Similarity=1.254 Sum_probs=36.9
Q ss_pred cccccccCCCCcEEcc-CCCccChhHHHHHHhhCCCCCCCCCccccc
Q 027023 30 ECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATI 75 (229)
Q Consensus 30 ~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v 75 (229)
+|+||++.+.+++.+. |||.||..|+..|++. ....||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCcC
Confidence 5999999997776655 9999999999999985 345899998753
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.81 E-value=2.9e-09 Score=91.12 Aligned_cols=53 Identities=25% Similarity=0.836 Sum_probs=41.9
Q ss_pred CCCCCccccccccCCCC---------cEEccCCCccChhHHHHHHhhCC---CCCCCCCcccccc
Q 027023 24 SEAGNFECNICFDLAQD---------PIVTLCGHLFCWPCLYKWLHGHS---NYRECPVCKATIE 76 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~---------pv~l~CgH~FC~~CL~~wl~~~s---~~~~CPvCR~~v~ 76 (229)
..+.+.+|+||+|...+ ++..+|+|.||..||.+|.+.+. ....||+||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34567899999998633 35679999999999999998531 2457999999877
No 18
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9e-09 Score=93.73 Aligned_cols=48 Identities=31% Similarity=0.705 Sum_probs=40.9
Q ss_pred ccccccccCCCCc---EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 29 FECNICFDLAQDP---IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 29 ~~C~ICld~~~~p---v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
..|.||+|.+++. +++||+|.||..||..|+... ...||+||+++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--CccCCCCCCcCCCC
Confidence 7999999999865 568999999999999999964 35699999977643
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.77 E-value=4.2e-09 Score=68.32 Aligned_cols=38 Identities=42% Similarity=0.928 Sum_probs=23.7
Q ss_pred ccccccCCCC----cEEccCCCccChhHHHHHHhhC-CCCCCCC
Q 027023 31 CNICFDLAQD----PIVTLCGHLFCWPCLYKWLHGH-SNYRECP 69 (229)
Q Consensus 31 C~ICld~~~~----pv~l~CgH~FC~~CL~~wl~~~-s~~~~CP 69 (229)
|+||.+ +.+ |++++|||+||.+||.++++.. ....+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 8999999999999999999964 2567787
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=9.6e-09 Score=62.79 Aligned_cols=39 Identities=46% Similarity=1.292 Sum_probs=34.7
Q ss_pred ccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 31 CNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 31 C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
|+||++..++++.++|||.||..|+..|++. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS--GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh--CcCCCCCC
Confidence 8999999999999999999999999999982 34579987
No 21
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.72 E-value=1.1e-08 Score=73.62 Aligned_cols=41 Identities=37% Similarity=1.089 Sum_probs=32.8
Q ss_pred ccccccccCCCCc-------------EEccCCCccChhHHHHHHhhCCCCCCCCCcc
Q 027023 29 FECNICFDLAQDP-------------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72 (229)
Q Consensus 29 ~~C~ICld~~~~p-------------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR 72 (229)
..|.||++.+.++ +...|||.||..||.+|++.+. +||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~---~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN---TCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS---B-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC---cCCCCC
Confidence 3499999998432 3358999999999999999554 999997
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=1e-08 Score=66.55 Aligned_cols=41 Identities=44% Similarity=1.074 Sum_probs=34.8
Q ss_pred cccccccCC---CCcEEccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 30 ECNICFDLA---QDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 30 ~C~ICld~~---~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
+|+||.+.+ ..+++++|||+||..|+.++.. ....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~---~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG---KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC---CCCCCcCCCC
Confidence 599999988 3567899999999999998883 4569999985
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.67 E-value=5.9e-09 Score=93.84 Aligned_cols=56 Identities=34% Similarity=0.802 Sum_probs=48.9
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
...+..+.|-||.|.+..|++++|+|.||.-||..+|..+. .||.|+..+.+..|.
T Consensus 18 k~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p---~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKP---QCPTCCVTVTESDLR 73 (442)
T ss_pred hhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCC---CCCceecccchhhhh
Confidence 34556789999999999999999999999999999999554 999999998876553
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.3e-08 Score=88.74 Aligned_cols=50 Identities=30% Similarity=0.826 Sum_probs=41.4
Q ss_pred CCCCCccccccccCC-CC------------cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 24 SEAGNFECNICFDLA-QD------------PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 24 ~~~~~~~C~ICld~~-~~------------pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
-.+++..|.||+|.+ .. |..++|||.+|..|++.|++.+ ++||+||.++-
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---QTCPICr~p~i 345 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---QTCPICRRPVI 345 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---cCCCcccCccc
Confidence 356778999999984 32 3678999999999999999954 49999999853
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.54 E-value=3.9e-08 Score=87.03 Aligned_cols=55 Identities=33% Similarity=0.657 Sum_probs=47.2
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
...+.-+.|-||.+.++.|+.++|||.||.-||.++|..+. .||+||.+..+..+
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp---~CP~Cr~~~~esrl 74 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP---FCPVCREDPCESRL 74 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCC---CCccccccHHhhhc
Confidence 33456688999999999999999999999999999999655 99999997765443
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3e-08 Score=84.97 Aligned_cols=47 Identities=32% Similarity=0.875 Sum_probs=42.4
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCK 72 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR 72 (229)
....+.+.|+||++.+.+|++++|+|.||..|+..++. ....||.||
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr 54 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE---GPLSCPVCR 54 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC---CCcCCcccC
Confidence 44567899999999999999999999999999999998 457999999
No 27
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.9e-08 Score=85.57 Aligned_cols=48 Identities=38% Similarity=0.787 Sum_probs=39.8
Q ss_pred CCccccccccCCCC---cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.-.+|.||++.+.. -+++||.|.||..|+..|+.. .+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--YSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--hcccCCccCCCCC
Confidence 34899999998853 367999999999999999984 3458999998765
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1e-07 Score=92.26 Aligned_cols=53 Identities=26% Similarity=0.691 Sum_probs=44.9
Q ss_pred CCCCCccccccccCCCC-----cEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 24 SEAGNFECNICFDLAQD-----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~-----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
....+..|+||.|.+.. +..++|+|.||..|+.+|++.++ +||.||..+....
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q---tCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ---TCPTCRTVLYDYV 344 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC---cCCcchhhhhccc
Confidence 34567899999999988 78999999999999999999654 9999999555433
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.41 E-value=2.4e-07 Score=68.35 Aligned_cols=49 Identities=33% Similarity=0.768 Sum_probs=38.2
Q ss_pred CccccccccCCC-----------C-c-EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQ-----------D-P-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~-----------~-p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+..|.||...+. + | +.-.|+|.||..||.+|+..++....||.||+...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 566777776654 1 2 33479999999999999997655789999999765
No 30
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.35 E-value=1.2e-07 Score=66.14 Aligned_cols=52 Identities=31% Similarity=0.811 Sum_probs=26.9
Q ss_pred CCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 27 GNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
+...|++|.+.+++||. ..|.|.||+.|+..-+. ..||+|+.+...+++.-+
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----TB-SSS--B-S-SS----
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----CCCCCcCChHHHHHHHhh
Confidence 45789999999999975 78999999999976444 269999998877666544
No 31
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.3e-07 Score=90.93 Aligned_cols=56 Identities=27% Similarity=0.704 Sum_probs=49.4
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
.-+.|++|-+-.++.+++.|+|.||..|+.+.+..+ ..+||.|.+.+...++.++|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR--qRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR--QRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh--cCCCCCCCCCCCcccccccC
Confidence 457899999999999999999999999999988863 35999999999988887765
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1e-06 Score=79.99 Aligned_cols=57 Identities=32% Similarity=0.738 Sum_probs=45.5
Q ss_pred CCCCCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCccccccccccccccC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYG 85 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~ 85 (229)
..+...+|.||+...+|-+++||.|. .|..|.+...-++ ..||+||+.+. .+..++.
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~---n~CPICRqpi~--~ll~i~~ 343 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQT---NNCPICRQPIE--ELLEIYV 343 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhh---cCCCccccchH--hhheecc
Confidence 33556899999999999999999998 8999988765433 38999999987 4444444
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.8e-07 Score=62.23 Aligned_cols=52 Identities=29% Similarity=0.832 Sum_probs=43.3
Q ss_pred CccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
+.||.||.|...|.|...|||. .|..|-.+.++. ....||+||+++. +++.-
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~--~~g~CPiCRapi~--dvIkT 59 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA--LHGCCPICRAPIK--DVIKT 59 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHc--cCCcCcchhhHHH--HHHHh
Confidence 4789999999999999999997 899999887774 3459999999987 55443
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=1.4e-06 Score=78.33 Aligned_cols=52 Identities=23% Similarity=0.653 Sum_probs=38.9
Q ss_pred CCccccccccC-CCCcE----EccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 27 GNFECNICFDL-AQDPI----VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 27 ~~~~C~ICld~-~~~pv----~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
++..||+|... +..|. +.+|||.||..|+...+.. +...||.|+..+..+.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~--~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC--CCCCCCCCCCccchhhc
Confidence 34689999974 33332 2379999999999997764 34589999998876653
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.1e-06 Score=75.43 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=44.0
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
....+|+||+....-|+.+.|+|.||..||+--.+. .+..|++||.++..+-+
T Consensus 5 ~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n--dk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN--DKKTCAVCRFPIDSTID 57 (324)
T ss_pred ccCCcceeeeccCCcCccccccchhhhhhhcchhhc--CCCCCceecCCCCcchh
Confidence 356789999999999999999999999999875553 34579999999986543
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.8e-06 Score=79.12 Aligned_cols=52 Identities=38% Similarity=0.876 Sum_probs=45.3
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.....+++|.||...+.+|++++|||.||..||.+-+. +...||.||..+.+
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld---~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD---QETECPLCRDELVE 130 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc---cCCCCccccccccc
Confidence 34578899999999999999999999999999999766 45599999998763
No 37
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.1e-06 Score=79.82 Aligned_cols=50 Identities=32% Similarity=0.781 Sum_probs=41.9
Q ss_pred CCCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...++.|+||+++++....+ .|+|.||..||..-++. ....||.||+.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~--gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS--GNNECPTCRKKLV 90 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--cCCCCchHHhhcc
Confidence 34678999999999988776 59999999999887774 4569999999764
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.82 E-value=1e-05 Score=74.60 Aligned_cols=53 Identities=32% Similarity=0.770 Sum_probs=44.9
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
..|.||-|.-+|-.+-+|||+.|..||..|...+ +...||.||..|+.+..+-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd-~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD-EGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccC-CCCCCCceeeEecccccee
Confidence 4599999999998899999999999999998754 3679999999998655443
No 39
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.80 E-value=1.3e-05 Score=55.06 Aligned_cols=45 Identities=24% Similarity=0.629 Sum_probs=31.9
Q ss_pred CCCCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCC
Q 027023 25 EAGNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPV 70 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPv 70 (229)
...++.|||.+..+++||. ..|||+|....|.+|++. .....||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR-NGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT-TS-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh-cCCCCCCC
Confidence 3456899999999999988 589999999999999953 35789998
No 40
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.77 E-value=8.6e-06 Score=58.11 Aligned_cols=50 Identities=36% Similarity=0.890 Sum_probs=25.3
Q ss_pred CccccccccCCC-C---cEE----ccCCCccChhHHHHHHhhCCC--------CCCCCCccccccc
Q 027023 28 NFECNICFDLAQ-D---PIV----TLCGHLFCWPCLYKWLHGHSN--------YRECPVCKATIEE 77 (229)
Q Consensus 28 ~~~C~ICld~~~-~---pv~----l~CgH~FC~~CL~~wl~~~s~--------~~~CPvCR~~v~~ 77 (229)
+.+|.||.+... + |++ ..|++.||..||.+|+..... ..+||.|+++++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 578999998764 2 222 269999999999999984211 1369999998863
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.77 E-value=1.6e-05 Score=74.14 Aligned_cols=57 Identities=35% Similarity=0.860 Sum_probs=48.0
Q ss_pred CCCCCCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
...++++.|++|...+.+|+. +.|||.||..|+..|+.. ...||.|+..+...+.++
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQAEELP 73 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc---CcCCcccccccchhhccC
Confidence 336778999999999999999 499999999999999995 459999988776555443
No 42
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.75 E-value=1.1e-05 Score=76.61 Aligned_cols=56 Identities=32% Similarity=0.780 Sum_probs=47.4
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC--CCCCCCCCccccccccc
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATIEEEK 79 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v~~~~ 79 (229)
...++.+|.+|.|..++++++.|.|.||..|+.+|...- +...+||+|...++.+.
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 345678999999999999999999999999999998842 34589999998887653
No 43
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.75 E-value=2.4e-06 Score=76.92 Aligned_cols=51 Identities=29% Similarity=0.684 Sum_probs=43.9
Q ss_pred CCCCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 25 EAGNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
......|.+|...+.|+.+ +.|-|.||..||.+++.. ...||.|...+...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---SKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---hccCCccceeccCc
Confidence 3456889999999999965 689999999999999995 55999999988754
No 44
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.1e-05 Score=70.99 Aligned_cols=57 Identities=19% Similarity=0.507 Sum_probs=43.7
Q ss_pred CCCCCCccccccccCCCCc----------EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDP----------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~p----------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
....++..|.||-..+... -.+.|+|+||..||.-|.... .+++||.||+.+..+.+
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivG-KkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVG-KKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeec-CCCCCchHHHHhhHhhh
Confidence 3344667899999776543 357899999999999998754 36799999998875544
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.74 E-value=1.6e-05 Score=74.19 Aligned_cols=50 Identities=28% Similarity=0.728 Sum_probs=40.9
Q ss_pred CCCCCCCccccccccCCCCcE----EccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPI----VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv----~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.-...+.-+||||++.+.+.+ .+.|.|.|+..|+..|+.. +||+||.-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-----scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS-----SCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC-----cChhhhhhcC
Confidence 344567789999999997654 4789999999999999983 8999997554
No 46
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.73 E-value=1.3e-05 Score=67.80 Aligned_cols=48 Identities=35% Similarity=0.688 Sum_probs=40.5
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.--+.|-||.+.++.||++.|||.||..|..+-.+.. ..|-+|.+...
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg---~~C~~Cgk~t~ 241 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG---DECGVCGKATY 241 (259)
T ss_pred CCceeehhchhhccchhhhhcchhHHHHHHHHHhccC---Ccceecchhhc
Confidence 3457899999999999999999999999998877743 48999977543
No 47
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.2e-05 Score=68.20 Aligned_cols=50 Identities=28% Similarity=0.709 Sum_probs=41.2
Q ss_pred CCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+.+.+|++|-+....|.+. +|+|.||..|+.+-...+ ...+||.|...+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-ASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-hhcccCccCCCCc
Confidence 4568899999999999776 599999999998866643 3579999987665
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.9e-05 Score=74.48 Aligned_cols=50 Identities=28% Similarity=0.745 Sum_probs=39.2
Q ss_pred CCCCccccccccCCC-----------------CcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQ-----------------DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~-----------------~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.+....|+||+.... +-.++||.|+|+..||.+|... .+..||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~--ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT--YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh--hcccCCccCCCCC
Confidence 445678999997653 1245799999999999999994 2358999998764
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1.2e-05 Score=74.37 Aligned_cols=61 Identities=30% Similarity=0.703 Sum_probs=49.8
Q ss_pred CCccccccccCCCCc-----EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCC
Q 027023 27 GNFECNICFDLAQDP-----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
....||||+|.+..+ +.+.|||.|-..||+.|+. +.....||.|.....++.+.+.|....
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~~~~cp~c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKTKMQCPLCSGKATKRQIRPEYALRV 68 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhhhhhCcccCChhHHHHHHHHHHHHH
Confidence 346899999998766 4578999999999999996 556789999998888777777665443
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.54 E-value=8.2e-05 Score=49.45 Aligned_cols=42 Identities=33% Similarity=0.886 Sum_probs=33.6
Q ss_pred ccccccc--CCCCcEEccCC-----CccChhHHHHHHhhCCCCCCCCCcc
Q 027023 30 ECNICFD--LAQDPIVTLCG-----HLFCWPCLYKWLHGHSNYRECPVCK 72 (229)
Q Consensus 30 ~C~ICld--~~~~pv~l~Cg-----H~FC~~CL~~wl~~~s~~~~CPvCR 72 (229)
.|-||++ ...++.+.||. |.+|..||.+|+..+. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-CCcCCCCC
Confidence 4889997 44567788985 7899999999998653 56999995
No 51
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=7.1e-05 Score=67.52 Aligned_cols=60 Identities=25% Similarity=0.664 Sum_probs=48.5
Q ss_pred CCCCCCCccccccccCCCCcEEcc-CCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
.....+...|+||+....+|.++. -|-+||+.|+..++..+. .||+-..+...++++.++
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~---~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG---HCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC---CCCccCCcchHHHHHHHh
Confidence 344556788999999999987765 599999999999999554 999988887777776655
No 52
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0001 Score=67.31 Aligned_cols=53 Identities=25% Similarity=0.642 Sum_probs=46.2
Q ss_pred CCCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 21 NSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.+-.+.++..|+||..-...++..||+|.-|..||.+.+. +.+.|=.|+..+.
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm---N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM---NCKRCFFCKTTVI 467 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHh---cCCeeeEecceee
Confidence 3445567889999999999999999999999999999999 5669999998776
No 53
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=8.5e-05 Score=68.09 Aligned_cols=56 Identities=27% Similarity=0.767 Sum_probs=43.4
Q ss_pred CCCccccccccCCCCcE-----E---ccCCCccChhHHHHHHhhCC----CCCCCCCccccccccccccc
Q 027023 26 AGNFECNICFDLAQDPI-----V---TLCGHLFCWPCLYKWLHGHS----NYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv-----~---l~CgH~FC~~CL~~wl~~~s----~~~~CPvCR~~v~~~~l~p~ 83 (229)
..+..|-||++...+.. . .+|.|.||..||..|-..+. -...||.||.... .+.+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~--~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS--FVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc--ccccc
Confidence 56789999999887665 2 57999999999999986432 1579999998766 45444
No 54
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.8e-05 Score=68.31 Aligned_cols=54 Identities=33% Similarity=0.895 Sum_probs=40.3
Q ss_pred CccccccccCCCCcE----EccCCCccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 28 NFECNICFDLAQDPI----VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 28 ~~~C~ICld~~~~pv----~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
..+|.||.|...... +-.|||+|+..|+.+|++.......||+|+-.+....+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 468999966554322 235999999999999999776557999999666655544
No 55
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.36 E-value=5.1e-05 Score=76.36 Aligned_cols=51 Identities=35% Similarity=0.909 Sum_probs=40.0
Q ss_pred CCCCccccccccCCC--C---c--EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQ--D---P--IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~--~---p--v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.++..+|+||...+. + | ....|.|.||..|+++|.+.. +..+||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss-~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS-ARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc-CCCCCCccccccc
Confidence 456789999997664 1 1 234699999999999999964 4679999997664
No 56
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.32 E-value=0.00013 Score=65.34 Aligned_cols=58 Identities=29% Similarity=0.679 Sum_probs=45.1
Q ss_pred CccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcc-ccccccccccccCCC
Q 027023 28 NFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCK-ATIEEEKLVPLYGRG 87 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR-~~v~~~~l~p~~~~~ 87 (229)
.+.|+.|..++++|+.+ -|+|.||..||..-|.. ....||.|. +.+-.+.+.|.+...
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d--sDf~CpnC~rkdvlld~l~pD~dk~ 333 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD--SDFKCPNCSRKDVLLDGLTPDIDKK 333 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhh--ccccCCCcccccchhhccCccHHHH
Confidence 38899999999999998 58999999999976663 346999994 455555666655443
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=7.1e-05 Score=66.70 Aligned_cols=46 Identities=37% Similarity=0.756 Sum_probs=39.8
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
-+.|-||...+.+||++.|+|.||..|...-++. ...|.+|.+.+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc---CCcceecccccc
Confidence 3669999999999999999999999999877774 348999988664
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00023 Score=62.17 Aligned_cols=59 Identities=17% Similarity=0.383 Sum_probs=50.8
Q ss_pred CCccccccccCCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCC
Q 027023 27 GNFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 27 ~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
..+.||||.+.+.+. +..+|||++|..|+...++.+. .||+|-.++..++++++...+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~---v~pv~d~plkdrdiI~LqrGGT 282 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM---VDPVTDKPLKDRDIIGLQRGGT 282 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc---cccCCCCcCcccceEeeecccc
Confidence 568899999999875 3468999999999999999555 9999999999999998876554
No 59
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.17 E-value=0.00028 Score=51.34 Aligned_cols=29 Identities=34% Similarity=0.899 Sum_probs=25.8
Q ss_pred cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 45 LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 45 ~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.|.|.|+..||.+||..+. .||++|+...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~---~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKG---VCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCC---CCCCCCceeE
Confidence 5999999999999999655 9999998765
No 60
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00036 Score=63.73 Aligned_cols=49 Identities=29% Similarity=0.703 Sum_probs=38.1
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.........|.||++...+.+.++|||.-| |..-..+ ..+||+||+.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH----LPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh----CCCCchhHHHHH
Confidence 344556678999999999999999999976 6654333 236999999876
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00013 Score=64.94 Aligned_cols=42 Identities=36% Similarity=0.861 Sum_probs=35.8
Q ss_pred CccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+..|.||+|..+|-+.++|||. -|..|=.+ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-------cccCchHHHHHH
Confidence 6789999999999999999996 69988542 347999999776
No 62
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00045 Score=49.93 Aligned_cols=47 Identities=34% Similarity=0.824 Sum_probs=36.2
Q ss_pred cccccccCCCC------------cEE-ccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 30 ECNICFDLAQD------------PIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 30 ~C~ICld~~~~------------pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.|-||.-.+.- |.+ -.|.|.|+..||.+|+........||.||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 67777755532 122 259999999999999997767789999999765
No 63
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.78 E-value=0.00024 Score=70.42 Aligned_cols=54 Identities=24% Similarity=0.555 Sum_probs=39.9
Q ss_pred CccccccccCCCCcEE---ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 28 NFECNICFDLAQDPIV---TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~---l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
...|++|+..+.+..+ ..|+|.||..||..|-+ ...+||+||..+.+.++...+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR---~aqTCPiDR~EF~~v~V~eS~ 179 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR---CAQTCPVDRGEFGEVKVLEST 179 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh---hcccCchhhhhhheeeeeccc
Confidence 4557777766655432 57999999999999999 455999999988755443333
No 64
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.63 E-value=0.0016 Score=51.84 Aligned_cols=52 Identities=29% Similarity=0.651 Sum_probs=44.6
Q ss_pred CCccccccccCCCCcEEcc----CCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 27 GNFECNICFDLAQDPIVTL----CGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~----CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
.-.+|+||.|.-.|...+. ||-..|-.|-...|+.-.-...||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 5689999999999887763 999999999999999766678999999887643
No 65
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.61 E-value=0.0022 Score=52.53 Aligned_cols=57 Identities=19% Similarity=0.566 Sum_probs=42.6
Q ss_pred CCccccccccCCCCcEEccC------------CCcc-ChhHHHHHHhhCC----------------------------CC
Q 027023 27 GNFECNICFDLAQDPIVTLC------------GHLF-CWPCLYKWLHGHS----------------------------NY 65 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~C------------gH~F-C~~CL~~wl~~~s----------------------------~~ 65 (229)
++..||||+|...++|.+.| +-.| +..||.++-+... ..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 46789999999999999865 3222 5789998877321 13
Q ss_pred CCCCCccccccccccccc
Q 027023 66 RECPVCKATIEEEKLVPL 83 (229)
Q Consensus 66 ~~CPvCR~~v~~~~l~p~ 83 (229)
..||+||..|..+.++.-
T Consensus 81 L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVVEP 98 (162)
T ss_pred ccCccccCceeceEEchH
Confidence 589999999998777643
No 66
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.57 E-value=0.00071 Score=67.22 Aligned_cols=53 Identities=36% Similarity=0.815 Sum_probs=45.4
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
..|.||.+ ...++++.|+|.||..|+...+.... ...||.||..+..+++...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-~~~~~~cr~~l~~~~l~s~ 507 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-NAPCPLCRNVLKEKKLLSA 507 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc-CCCCcHHHHHHHHHHHhhc
Confidence 89999999 88889999999999999999888543 4489999999987776543
No 67
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.50 E-value=0.0036 Score=55.33 Aligned_cols=61 Identities=25% Similarity=0.515 Sum_probs=48.2
Q ss_pred CCCCCccccccccCCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCC
Q 027023 24 SEAGNFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
.....+.|||....+..- ...+|||+|+..+|.+.- ....||+|-.++...+++++.....
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k----~~~~Cp~c~~~f~~~DiI~Lnp~~e 173 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK----KSKKCPVCGKPFTEEDIIPLNPPEE 173 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc----ccccccccCCccccCCEEEecCCcc
Confidence 356779999999988542 235999999999999873 1247999999999999988766544
No 68
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.03 E-value=0.0033 Score=42.69 Aligned_cols=48 Identities=29% Similarity=0.608 Sum_probs=36.8
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
....|-.|...-...++++|||..|..|..-+- -..||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r-----YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER-----YNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhh-----ccCCCCCCCcccCCC
Confidence 345677888887888999999999999975332 237999998886443
No 69
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0043 Score=47.36 Aligned_cols=28 Identities=29% Similarity=0.896 Sum_probs=24.4
Q ss_pred cCCCccChhHHHHHHhhCCCCCCCCCccccc
Q 027023 45 LCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75 (229)
Q Consensus 45 ~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v 75 (229)
.|.|.|+..||.+|++.+. .||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~---vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN---VCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcC---cCCCcCcce
Confidence 5999999999999999654 999997754
No 70
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.0029 Score=55.05 Aligned_cols=50 Identities=40% Similarity=0.861 Sum_probs=35.2
Q ss_pred ccccccccCCC-Cc-EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 29 FECNICFDLAQ-DP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 29 ~~C~ICld~~~-~p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
..|+.|..-.. ++ ..|.|+|+||..|...-. ...||.||+.+....+.++
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-----~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS-----PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC-----ccccccccceeeeeecccc
Confidence 46888875443 33 358999999999975322 2389999999876555443
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.74 E-value=0.01 Score=54.35 Aligned_cols=58 Identities=22% Similarity=0.592 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 18 SNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 18 s~~~~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+++.++-++++..|-||.+-+.-..++||+|..|.-|-.+.-.- -..+.|+.||..-.
T Consensus 51 tsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRAL-Y~~K~C~~CrTE~e 108 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRAL-YMQKGCPLCRTETE 108 (493)
T ss_pred cccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHH-HhccCCCccccccc
Confidence 33444556778899999999999999999999999998653210 02358999998543
No 72
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.46 E-value=0.0047 Score=57.28 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=38.2
Q ss_pred CCccccccccCCC--Cc--EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQ--DP--IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~--~p--v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
-++-|..|-+.+- +. -.++|.|+||..|+.+++..+ ...+||.||+-.+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-GTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-CCCCCccHHHHHh
Confidence 4567999998773 22 348999999999999999854 4789999995443
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0075 Score=56.20 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=36.4
Q ss_pred CCCccccccccCCCC---cEEccCCCccChhHHHHHHhhC-----CCCCCCCCccc
Q 027023 26 AGNFECNICFDLAQD---PIVTLCGHLFCWPCLYKWLHGH-----SNYRECPVCKA 73 (229)
Q Consensus 26 ~~~~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~~~-----s~~~~CPvCR~ 73 (229)
...+.|.||.+...- -+.++|+|.||..|+..|.... ....+||-++.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 346789999987754 2568999999999999988743 23568887654
No 74
>PHA03096 p28-like protein; Provisional
Probab=95.27 E-value=0.0086 Score=53.76 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=34.5
Q ss_pred ccccccccCCCC--------cEEccCCCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 29 FECNICFDLAQD--------PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 29 ~~C~ICld~~~~--------pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
.+|.||++...+ .+...|.|.||..|+..|.........||.||.-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 679999987643 2345799999999999998865455566666553
No 75
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.019 Score=49.72 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=38.7
Q ss_pred CCccccccccCCC--CcEEccCCCccChhHHHHHHhhC-----CCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQ--DPIVTLCGHLFCWPCLYKWLHGH-----SNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~--~pv~l~CgH~FC~~CL~~wl~~~-----s~~~~CPvCR~~v~ 76 (229)
-+-.|.+|...+. |.+.+.|-|+|+|.|+.+|...- .....||.|...|-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3456999988775 45678999999999999997732 23469999988763
No 76
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.10 E-value=0.025 Score=46.47 Aligned_cols=51 Identities=20% Similarity=0.522 Sum_probs=39.1
Q ss_pred CCCCccccccccCCCCcEEccCCC-----ccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGH-----LFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH-----~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
...+.+|-||.+... +...||.. .-|.+|+.+|+..+ +...|+.|+++...
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s-~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTS-KNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcC-CCCcccccCCeEEE
Confidence 456678999998864 33457654 45899999999965 57899999988763
No 77
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.93 E-value=0.032 Score=35.97 Aligned_cols=40 Identities=25% Similarity=0.599 Sum_probs=24.7
Q ss_pred ccccccCCCCcEEc---cCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 31 CNICFDLAQDPIVT---LCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 31 C~ICld~~~~pv~l---~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
|.+|.+.....+.= .|+-.+|..|+..|++..+.. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNP-KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS--B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCC-CCcCC
Confidence 78899988877763 499999999999999965433 79987
No 78
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.87 E-value=0.015 Score=54.82 Aligned_cols=36 Identities=25% Similarity=0.680 Sum_probs=32.3
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhh
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG 61 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~ 61 (229)
++++.|+||...+++|++++|+|..|..|....+..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 567899999999999999999999999999866653
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.79 E-value=0.021 Score=37.80 Aligned_cols=43 Identities=23% Similarity=0.587 Sum_probs=21.1
Q ss_pred ccccccCCCC--cEEc--cCCCccChhHHHHHHhhCCCCCCCCCccccc
Q 027023 31 CNICFDLAQD--PIVT--LCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75 (229)
Q Consensus 31 C~ICld~~~~--pv~l--~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v 75 (229)
|++|.+.+.. .... +||+..|..|....++. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~--~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN--EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS--S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc--cCCCCCCCCCCC
Confidence 7899988732 2233 58999999999888763 345999999864
No 80
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.02 Score=51.10 Aligned_cols=46 Identities=37% Similarity=0.684 Sum_probs=37.5
Q ss_pred CccccccccCCC------CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccc
Q 027023 28 NFECNICFDLAQ------DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75 (229)
Q Consensus 28 ~~~C~ICld~~~------~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v 75 (229)
..+|.||-+.+. .|.++.|||.+|..|+...+.. ....||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~--~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN--SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC--ceeeccCCCCcc
Confidence 467999998875 3677889999999999877774 356889999974
No 81
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.55 E-value=0.039 Score=49.93 Aligned_cols=47 Identities=32% Similarity=0.728 Sum_probs=37.2
Q ss_pred CCCCCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 24 SEAGNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...+-++||||.+.+..|+. -.=||+-|..|-.+.. .+||.||.++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS------NKCPTCRLPIG 91 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhc------ccCCccccccc
Confidence 34567899999999998854 3558999999975433 38999999886
No 82
>PHA02862 5L protein; Provisional
Probab=94.40 E-value=0.033 Score=45.10 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=37.3
Q ss_pred ccccccccCCCCcEEccCCC-----ccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 29 FECNICFDLAQDPIVTLCGH-----LFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH-----~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
..|-||.+.-.+. ..||.. .-|..||.+|+.. +++..|+.|+.+...+
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~-S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINY-SKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhc-CCCcCccCCCCeEEEE
Confidence 5799999886554 467654 5689999999975 4688999999987643
No 83
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.047 Score=50.74 Aligned_cols=51 Identities=22% Similarity=0.487 Sum_probs=40.5
Q ss_pred CCccccccccCCC---CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQ---DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~---~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
..+.|||=.+.-. .|+.+.|||+.|.+-|.+..+....+.+||.|-.....
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA 386 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence 4578999776654 47889999999999999988865556899999765543
No 84
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.85 E-value=0.019 Score=51.71 Aligned_cols=52 Identities=31% Similarity=0.611 Sum_probs=38.0
Q ss_pred CCCccccccccCCCCc---EEccCCCccChhHHHHHHhhC--------------------CCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDP---IVTLCGHLFCWPCLYKWLHGH--------------------SNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p---v~l~CgH~FC~~CL~~wl~~~--------------------s~~~~CPvCR~~v~~ 77 (229)
-..-.|.||+--+.+. ++|+|-|-++..|+.+|+..- .....||+||..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3456799999666532 578999999999998776520 013479999998763
No 85
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.82 E-value=0.014 Score=57.84 Aligned_cols=53 Identities=30% Similarity=0.743 Sum_probs=43.5
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
...+|+||.....+|+.+.|-|.||..|+..-+........||+|+..+.+..
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 46899999999999999999999999998765554445679999997766443
No 86
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.054 Score=48.50 Aligned_cols=46 Identities=24% Similarity=0.679 Sum_probs=34.7
Q ss_pred ccccccc-CCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 30 ECNICFD-LAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 30 ~C~ICld-~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.||+|.. .+.+| .+-+|+|..|..|+...... +...||.|-..+.+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~--g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL--GPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc--CCCCCCcccchhhh
Confidence 5999984 44454 22389999999999988775 45699999876654
No 87
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.31 E-value=0.054 Score=36.01 Aligned_cols=46 Identities=24% Similarity=0.686 Sum_probs=23.6
Q ss_pred CccccccccCCCCcEE-ccCCCccChhHHHHHHhh--CCCCCCCCCcccc
Q 027023 28 NFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHG--HSNYRECPVCKAT 74 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~--~s~~~~CPvCR~~ 74 (229)
.+.|+|....+..|+. ..|.|.-|.+= ..|++. +.....||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 3679999999999987 58999977653 345542 1245789999763
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.98 E-value=0.024 Score=59.30 Aligned_cols=45 Identities=40% Similarity=0.981 Sum_probs=39.3
Q ss_pred CCCccccccccCCC-CcEEccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 26 AGNFECNICFDLAQ-DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 26 ~~~~~C~ICld~~~-~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
.....|.||++.++ ...+..|||.+|..|...|+.+++ .||.|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s---~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS---RCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc---cCcchhh
Confidence 34568999999998 567889999999999999999766 9999985
No 89
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.055 Score=46.47 Aligned_cols=39 Identities=28% Similarity=0.728 Sum_probs=31.6
Q ss_pred ccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 31 CNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 31 C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
|-+|.+.-..-+.+||.|+ +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------CccCCCCcChhh
Confidence 9999988887777899997 89999543 347999988665
No 90
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.80 E-value=0.05 Score=40.71 Aligned_cols=32 Identities=22% Similarity=0.634 Sum_probs=26.0
Q ss_pred CCCCccccccccCCCCcE--EccCCCccChhHHH
Q 027023 25 EAGNFECNICFDLAQDPI--VTLCGHLFCWPCLY 56 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv--~l~CgH~FC~~CL~ 56 (229)
.+++..|++|...+.+.+ +.||||.+|..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345677999999987664 47999999999974
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.69 E-value=0.075 Score=48.72 Aligned_cols=50 Identities=20% Similarity=0.501 Sum_probs=33.9
Q ss_pred ccccccccCCCC--cE--EccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 29 FECNICFDLAQD--PI--VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 29 ~~C~ICld~~~~--pv--~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
.-||+|++.+.. .- --+||...|.-|....-+. -..+||.||+....+.+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~--lngrcpacrr~y~denv 68 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN--LNGRCPACRRKYDDENV 68 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhh--ccCCChHhhhhccccce
Confidence 339999998853 22 2478988788886544332 23489999998776543
No 92
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=92.58 E-value=0.06 Score=57.28 Aligned_cols=53 Identities=30% Similarity=0.663 Sum_probs=40.2
Q ss_pred CCCCccccccccCCC---CcEEccCCCccChhHHHHHHhhCC-------CCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQ---DPIVTLCGHLFCWPCLYKWLHGHS-------NYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~---~pv~l~CgH~FC~~CL~~wl~~~s-------~~~~CPvCR~~v~~ 77 (229)
.+.+..|-||....- ..+.+.|+|.|+..|..+.++.+= +-..||+|+.++..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 456677999986542 346799999999999988777431 23589999998874
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=0.068 Score=53.97 Aligned_cols=43 Identities=30% Similarity=0.672 Sum_probs=35.5
Q ss_pred CCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCccccc
Q 027023 27 GNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v 75 (229)
....|..|--.+.-|++ ..|||.||..|+. . ....||.|+...
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~---~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D---KEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---c---CcccCCccchhh
Confidence 44689999999998866 7999999999997 2 356999998743
No 94
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.01 E-value=0.095 Score=34.33 Aligned_cols=40 Identities=28% Similarity=0.950 Sum_probs=25.7
Q ss_pred ccccccCCCC--cEEccCCC-----ccChhHHHHHHhhCCCCCCCCCc
Q 027023 31 CNICFDLAQD--PIVTLCGH-----LFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 31 C~ICld~~~~--pv~l~CgH-----~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
|-||++.-.+ +.+.||.- ..|..||.+|+..+ +..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~-~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES-GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH-T-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc-CCCcCCCC
Confidence 6788866542 56788753 46899999999964 35679887
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.86 E-value=0.066 Score=42.86 Aligned_cols=33 Identities=36% Similarity=0.898 Sum_probs=26.5
Q ss_pred CccccccccCCCC--cEE-ccCC------CccChhHHHHHHh
Q 027023 28 NFECNICFDLAQD--PIV-TLCG------HLFCWPCLYKWLH 60 (229)
Q Consensus 28 ~~~C~ICld~~~~--pv~-l~Cg------H~FC~~CL~~wl~ 60 (229)
..+|.||++.+.+ .|+ +.|| |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6899999998877 554 4554 6899999999954
No 96
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.84 E-value=0.19 Score=46.64 Aligned_cols=35 Identities=26% Similarity=0.785 Sum_probs=26.2
Q ss_pred CCCccChhHHHHHHhhCC----------CCCCCCCcccccccccc
Q 027023 46 CGHLFCWPCLYKWLHGHS----------NYRECPVCKATIEEEKL 80 (229)
Q Consensus 46 CgH~FC~~CL~~wl~~~s----------~~~~CPvCR~~v~~~~l 80 (229)
|.-..|..|+-+|+..+. ++..||.||+.+...++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 445568999999987432 46899999999875443
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.056 Score=53.12 Aligned_cols=44 Identities=30% Similarity=0.694 Sum_probs=33.3
Q ss_pred CCCCccccccccCC----CCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 25 EAGNFECNICFDLA----QDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 25 ~~~~~~C~ICld~~----~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
..+-+.|+||+..+ ..|+.+.|||+.|..|+..... ..|| |+.+
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn-----~scp-~~~D 55 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN-----ASCP-TKRD 55 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh-----ccCC-CCcc
Confidence 34457899998766 3688899999999999976554 2688 6553
No 98
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.31 E-value=0.18 Score=50.95 Aligned_cols=56 Identities=21% Similarity=0.583 Sum_probs=41.7
Q ss_pred CCCCCccccccccCC--CCcEEccCCCc-----cChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 24 SEAGNFECNICFDLA--QDPIVTLCGHL-----FCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 24 ~~~~~~~C~ICld~~--~~pv~l~CgH~-----FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
..+++..|.||...- .+|..-||... .|.+|+.+|+.. +...+|-+|+.+++-+++
T Consensus 8 mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~-s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMEC-SGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred CCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhc-CCCcceeeecceeeeeee
Confidence 344568899999543 45666677653 589999999995 457899999998875554
No 99
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=0.22 Score=44.67 Aligned_cols=37 Identities=24% Similarity=0.744 Sum_probs=32.1
Q ss_pred CCCccccccccCCCCcEEccC----CCccChhHHHHHHhhC
Q 027023 26 AGNFECNICFDLAQDPIVTLC----GHLFCWPCLYKWLHGH 62 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~C----gH~FC~~CL~~wl~~~ 62 (229)
..-+.|.+|.|.+.|-....| .|.||.+|-.+.++.+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 445889999999999988777 7999999999999865
No 100
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.18 Score=42.31 Aligned_cols=34 Identities=41% Similarity=0.912 Sum_probs=26.3
Q ss_pred ccCCCccChhHHHHHHhhC--C-C-----CCCCCCccccccc
Q 027023 44 TLCGHLFCWPCLYKWLHGH--S-N-----YRECPVCKATIEE 77 (229)
Q Consensus 44 l~CgH~FC~~CL~~wl~~~--s-~-----~~~CPvCR~~v~~ 77 (229)
..||..||.-||..|++.- + + -..||.|..++..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4699999999999999831 1 1 1489999888763
No 101
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=0.2 Score=44.08 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhC
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH 62 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~ 62 (229)
.-..|.+|+...++||+++=||+||..||.+++..+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 345689999999999999999999999999887643
No 102
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=90.25 E-value=0.18 Score=50.97 Aligned_cols=51 Identities=27% Similarity=0.760 Sum_probs=38.4
Q ss_pred CCCccccccccCCCC--cEE--ccCCCccChhHHHHHHhhC----CCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQD--PIV--TLCGHLFCWPCLYKWLHGH----SNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~--pv~--l~CgH~FC~~CL~~wl~~~----s~~~~CPvCR~~v~ 76 (229)
...++|-||.+.+.. ++- ..|-|+|+..||.+|.+.. ....+||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 456789999998863 332 3599999999999998852 13579999985433
No 103
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.06 E-value=0.19 Score=45.00 Aligned_cols=44 Identities=30% Similarity=0.721 Sum_probs=35.9
Q ss_pred CCccccccccCCC----CcEEccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 27 GNFECNICFDLAQ----DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 27 ~~~~C~ICld~~~----~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
....||||.+.+. ++.+++|||..+..|+...... + ..||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--G-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--C-CCCCcccc
Confidence 3444999998764 4567899999999999988884 3 79999988
No 104
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=0.14 Score=46.40 Aligned_cols=42 Identities=24% Similarity=0.604 Sum_probs=27.8
Q ss_pred cccccccCCC-CcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 30 ECNICFDLAQ-DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 30 ~C~ICld~~~-~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
-|.-|--.+. -...++|.|+||.+|.. +. ..+.||.|-..|.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr--~~---~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECAR--SD---SDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhh--cC---ccccCcCcccHHH
Confidence 3555644332 23567999999999974 22 2458999977654
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.01 E-value=0.094 Score=45.97 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=36.1
Q ss_pred CCCCccccccccC-CCCc-EE---cc-CCCccChhHHHHHHhhCCCCCCCC--Ccccccc
Q 027023 25 EAGNFECNICFDL-AQDP-IV---TL-CGHLFCWPCLYKWLHGHSNYRECP--VCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~-~~~p-v~---l~-CgH~FC~~CL~~wl~~~s~~~~CP--vCR~~v~ 76 (229)
...+..||||..+ +-+| +. -| |-|..|..|+.+.+.. +...|| -|.+-+.
T Consensus 7 ~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~--GpAqCP~~gC~kILR 64 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR--GPAQCPYKGCGKILR 64 (314)
T ss_pred hhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC--CCCCCCCccHHHHHH
Confidence 4456789999954 3444 22 23 9999999999998885 457899 6866444
No 106
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=0.26 Score=44.35 Aligned_cols=35 Identities=26% Similarity=0.748 Sum_probs=27.1
Q ss_pred CCCccChhHHHHHHhhCC----------CCCCCCCcccccccccc
Q 027023 46 CGHLFCWPCLYKWLHGHS----------NYRECPVCKATIEEEKL 80 (229)
Q Consensus 46 CgH~FC~~CL~~wl~~~s----------~~~~CPvCR~~v~~~~l 80 (229)
|....|.+||.+|+..+. ++..||.||+.+...++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 566788999999987432 57899999998876554
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.47 Score=45.04 Aligned_cols=57 Identities=32% Similarity=0.729 Sum_probs=41.8
Q ss_pred CCCCCccccccccCCCC-cEEccCCCccChhHHHHHHhhCC---CC--CCCCC--cccccccccc
Q 027023 24 SEAGNFECNICFDLAQD-PIVTLCGHLFCWPCLYKWLHGHS---NY--RECPV--CKATIEEEKL 80 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~-pv~l~CgH~FC~~CL~~wl~~~s---~~--~~CPv--CR~~v~~~~l 80 (229)
......+|.||.+.... .+.+.|||.||..|...++..+- .. .+||. |++.+..+.+
T Consensus 66 ~~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred CCCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 34567899999998885 66679999999999999988431 11 45654 7776665444
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.57 E-value=0.37 Score=42.67 Aligned_cols=55 Identities=25% Similarity=0.576 Sum_probs=40.4
Q ss_pred CCCCCCCccccccccCCCCcE----EccC-----CCccChhHHHHHHhhCC-----CCCCCCCcccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPI----VTLC-----GHLFCWPCLYKWLHGHS-----NYRECPVCKATIE 76 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv----~l~C-----gH~FC~~CL~~wl~~~s-----~~~~CPvCR~~v~ 76 (229)
.++.+.+..|-||+..=+|.. +-|| .|+.|..||.+|...+. +...||.|+....
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 345567788999997666543 2355 47889999999998542 3579999988655
No 109
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.23 E-value=0.32 Score=49.47 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCCCccccccccCCC-Cc-EEccCCCccChhHHHHHHh
Q 027023 25 EAGNFECNICFDLAQ-DP-IVTLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 25 ~~~~~~C~ICld~~~-~p-v~l~CgH~FC~~CL~~wl~ 60 (229)
.+.+..|.+|...+. .| .+.+|||.||+.||.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 345678999997664 33 6789999999999987554
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.25 E-value=0.66 Score=42.27 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=40.4
Q ss_pred CCCccccccccCCC---CcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQ---DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~---~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
-.-+.||+=.+... .|+.+.|||+.-..-+.+.-+......+||.|-..-.
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSK 387 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchh
Confidence 34578999777664 4788999999999999988887666889999965443
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=0.8 Score=42.85 Aligned_cols=51 Identities=29% Similarity=0.699 Sum_probs=35.2
Q ss_pred CCCccccccccCCCCc----EEccCCCccChhHHHHHHhhC---CCCCCCCC--cccccc
Q 027023 26 AGNFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGH---SNYRECPV--CKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~~---s~~~~CPv--CR~~v~ 76 (229)
....+|.||......+ .+..|+|.||..|+.++.+.+ ....+||. |...+.
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 3567899999333322 357899999999999998854 23567765 554444
No 112
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.01 E-value=1.2 Score=45.12 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=34.9
Q ss_pred CCccccccccCCCCc-------EEccCCCccChhHHHHHHhhC---CCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDP-------IVTLCGHLFCWPCLYKWLHGH---SNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-------v~l~CgH~FC~~CL~~wl~~~---s~~~~CPvCR~~v~ 76 (229)
....|.||...+.++ .+-.|+|.+|..||..|...- .....|+.|..-+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 445677776666553 233599999999999998742 23567888887654
No 113
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.63 E-value=0.51 Score=31.17 Aligned_cols=42 Identities=26% Similarity=0.755 Sum_probs=23.2
Q ss_pred ccccccCCCCcEEccCC-CccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 31 CNICFDLAQDPIVTLCG-HLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 31 C~ICld~~~~pv~l~Cg-H~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
|.-|. +.+.-.+.|. |-.|..||...+.. +..||+|+.++..
T Consensus 5 CKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~---s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCW--FANKGLIKCSDHYLCLNCLTLMLSR---SDRCPICGKPLPT 47 (50)
T ss_dssp --SS---S--SSEEE-SS-EEEHHHHHHT-SS---SSEETTTTEE---
T ss_pred Chhhh--hcCCCeeeecchhHHHHHHHHHhcc---ccCCCcccCcCcc
Confidence 44443 2333345675 88899999988884 4599999988763
No 114
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=1.7 Score=38.53 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=42.8
Q ss_pred CCCccccccccCCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 26 AGNFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
...+.|||---.+..- ....|||+|-..-+.+.-. ..|++|.+.+..++++.+.+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika-----s~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA-----SVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh-----ccccccCCcccccCeEeeCCC
Confidence 3468899977666543 4568999999998876543 389999999999888876553
No 115
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.80 E-value=2.3 Score=37.59 Aligned_cols=51 Identities=22% Similarity=0.583 Sum_probs=37.6
Q ss_pred CCCccccccccCCCC----cEEccCCC-----ccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQD----PIVTLCGH-----LFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~----pv~l~CgH-----~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.+...|-||.+.... +...+|.. ..|..|+..|...+ +...|.+|......
T Consensus 76 ~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~-~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIK-GNITCEICKSFFIN 135 (323)
T ss_pred CCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccc-cCeeeeccccccee
Confidence 335789999986643 45677743 35899999999954 47899999886653
No 116
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.01 E-value=1.5 Score=43.97 Aligned_cols=54 Identities=26% Similarity=0.556 Sum_probs=40.9
Q ss_pred CCCCCCCccccccccCCCCc----------EEccCCCcc--------------------ChhHHHHHHhh-----CCCCC
Q 027023 22 SNSEAGNFECNICFDLAQDP----------IVTLCGHLF--------------------CWPCLYKWLHG-----HSNYR 66 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~p----------v~l~CgH~F--------------------C~~CL~~wl~~-----~s~~~ 66 (229)
.....+.-.|.-|++.+.|| ..|.||-.| |..|..+|-.. |.+..
T Consensus 95 ~~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~ 174 (750)
T COG0068 95 TQIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPI 174 (750)
T ss_pred cccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccc
Confidence 34456778899999988876 236788877 99999988663 34678
Q ss_pred CCCCccccc
Q 027023 67 ECPVCKATI 75 (229)
Q Consensus 67 ~CPvCR~~v 75 (229)
.||.|.-.+
T Consensus 175 aCp~CGP~~ 183 (750)
T COG0068 175 ACPKCGPHL 183 (750)
T ss_pred cCcccCCCe
Confidence 999997644
No 117
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=75.90 E-value=4.2 Score=29.61 Aligned_cols=52 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred CCccccccccCCC-----CcEE--ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 27 GNFECNICFDLAQ-----DPIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 27 ~~~~C~ICld~~~-----~pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
....|.||-|..- ++-+ -.|+-..|..|..-=.+ .+.+.||.|+......+-
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk--eg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK--EGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH--TS-SB-TTT--B----TT
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh--cCcccccccCCCcccccC
Confidence 4567999998763 1222 36888889999853333 256799999987764443
No 118
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=75.13 E-value=5.6 Score=41.84 Aligned_cols=51 Identities=31% Similarity=0.792 Sum_probs=35.9
Q ss_pred CCccccccccCCCC-----cEE--ccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 27 GNFECNICFDLAQD-----PIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 27 ~~~~C~ICld~~~~-----pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
....|.||-|..-. +-+ -.|+--.|.+|. +|=+ +.+++.||.||.....-|
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr-~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYER-KDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhh-hcCCccCCccCCchhhhc
Confidence 34579999988632 222 368888999998 4433 336789999999887544
No 119
>PLN02189 cellulose synthase
Probab=75.07 E-value=4.6 Score=42.33 Aligned_cols=54 Identities=30% Similarity=0.620 Sum_probs=36.7
Q ss_pred CCccccccccCCCC-----cEE--ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 27 GNFECNICFDLAQD-----PIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 27 ~~~~C~ICld~~~~-----pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
....|.||-|..-. +-+ -.|+--.|..|. ++-+ +.+.+.||.||.....-+-.|
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer-~eg~q~CpqCkt~Y~r~kgs~ 93 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYER-REGTQNCPQCKTRYKRLKGSP 93 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhh-hcCCccCcccCCchhhccCCC
Confidence 34589999998642 211 248888999998 4433 235789999999887544333
No 120
>PLN02436 cellulose synthase A
Probab=72.77 E-value=3.9 Score=42.96 Aligned_cols=53 Identities=32% Similarity=0.725 Sum_probs=36.1
Q ss_pred CccccccccCCC---C--cEE--ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 28 NFECNICFDLAQ---D--PIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 28 ~~~C~ICld~~~---~--pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
...|.||-|..- + +-+ -.|+--.|..|. ++-+. .+.+.||.||.....-+-.|
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~-eg~~~Cpqckt~Y~r~kgs~ 95 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERR-EGNQACPQCKTRYKRIKGSP 95 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhh-cCCccCcccCCchhhccCCC
Confidence 348999999863 2 211 247888999998 44332 35789999999887544333
No 121
>PLN02400 cellulose synthase
Probab=71.37 E-value=5.9 Score=41.72 Aligned_cols=53 Identities=28% Similarity=0.587 Sum_probs=36.7
Q ss_pred CccccccccCCCC-----cEE--ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 28 NFECNICFDLAQD-----PIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 28 ~~~C~ICld~~~~-----pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
...|.||-|..-. +-+ -.|+--.|.+|. +|=+ +.+.+.||.||...+..|-.|
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYER-keGnq~CPQCkTrYkR~Kgsp 95 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYER-KDGTQCCPQCKTRYRRHKGSP 95 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchh-heec-ccCCccCcccCCccccccCCC
Confidence 3489999988632 222 368888999998 3333 346789999999887555333
No 122
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.92 E-value=5.3 Score=38.98 Aligned_cols=50 Identities=30% Similarity=0.678 Sum_probs=38.3
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
........|.||.+.. ...+++|. +..|+..|+..+. .||.|+..+..++
T Consensus 474 ~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~---~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQE---VCPLCHTYMKEDD 523 (543)
T ss_pred hhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhhcc---ccCCCchhhhccc
Confidence 3445667899999988 66778888 5788899998655 8999988766433
No 123
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=68.61 E-value=0.3 Score=34.83 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=23.1
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+..||.|...+.-. =+|.+|..|-..+.+. ..||.|.+++.
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~~----a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKKE----AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEEE----EE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe----CCEEECccccccceec----ccCCCcccHHH
Confidence 35799999875421 1788899998765553 37999999876
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.34 E-value=2.6 Score=36.36 Aligned_cols=44 Identities=25% Similarity=0.592 Sum_probs=34.5
Q ss_pred CCccccccccCCCCcE-EccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 27 GNFECNICFDLAQDPI-VTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv-~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
.-..|.+|..+....+ .-.|+-.++..|+.++++.. ..||.|.-
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~---~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR---DICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhccc---CcCCchhc
Confidence 3467999999876554 35788889999999999954 48999943
No 125
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=68.13 E-value=5.8 Score=41.60 Aligned_cols=51 Identities=27% Similarity=0.703 Sum_probs=35.6
Q ss_pred CCccccccccCCCC-----cEE--ccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 27 GNFECNICFDLAQD-----PIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 27 ~~~~C~ICld~~~~-----pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
....|.||-|..-. +-+ -.|+--.|.+|. ++-+ +.+.+.||.|+.....-+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~-~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYER-SEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhh-hcCCccCCccCCchhhhc
Confidence 34569999988642 222 368888999998 4433 235789999999887444
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=66.11 E-value=4.7 Score=36.94 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=34.9
Q ss_pred CccccccccCCC--Cc--EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQ--DP--IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~--~p--v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...|+||.+.+. +. +-.+|++..|+.|+......+. +||.||.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~---~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDG---RCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCC---CCCccCCccc
Confidence 367999999773 22 2357899999999998888554 9999995544
No 127
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.92 E-value=0.6 Score=43.62 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=37.7
Q ss_pred CccccccccCCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 28 NFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 28 ~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.-.|.||.+.++.- ..+-|||.++..||.+|+.... .||.|+..+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~---kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR---KLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH---HhHHHHhhhhh
Confidence 45689998777533 3578999999999999999654 89999987764
No 128
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.80 E-value=5.1 Score=28.84 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=24.3
Q ss_pred CCccChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 47 GHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 47 gH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
-|.||..|....+.. .||.|...+..+.+.|.
T Consensus 28 EcTFCadCae~~l~g-----~CPnCGGelv~RP~RPa 59 (84)
T COG3813 28 ECTFCADCAENRLHG-----LCPNCGGELVARPIRPA 59 (84)
T ss_pred eeehhHhHHHHhhcC-----cCCCCCchhhcCcCChH
Confidence 468999999877762 89999887765555444
No 129
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=61.28 E-value=7.1 Score=37.20 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=47.4
Q ss_pred cccccccCCCCcEEcc-CCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 30 ECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 30 ~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
.|.|--+..++||+.+ -||+|=.+-|.+++...+ +||+-.++++.+.++++...
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G---~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETG---KDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcC---CCCCCCCcCCHHHeeecccc
Confidence 5999999999999865 899999999999999655 99999999999999887553
No 130
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=61.25 E-value=4.6 Score=40.99 Aligned_cols=39 Identities=28% Similarity=0.798 Sum_probs=26.7
Q ss_pred ccccccccCCCCc--EEccCCCccChhHHHHHHhhCCCCCCCCC
Q 027023 29 FECNICFDLAQDP--IVTLCGHLFCWPCLYKWLHGHSNYRECPV 70 (229)
Q Consensus 29 ~~C~ICld~~~~p--v~l~CgH~FC~~CL~~wl~~~s~~~~CPv 70 (229)
+.|.||.-..+-. +...|+|..|..|..+|++... .||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd---~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD---VCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC---cCCC
Confidence 3455554333222 2357999999999999999654 7886
No 131
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=60.88 E-value=5 Score=28.31 Aligned_cols=13 Identities=46% Similarity=1.086 Sum_probs=9.5
Q ss_pred ccChhHHHHHHhh
Q 027023 49 LFCWPCLYKWLHG 61 (229)
Q Consensus 49 ~FC~~CL~~wl~~ 61 (229)
-||..||..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 132
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.32 E-value=12 Score=25.43 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=23.7
Q ss_pred CCccccccccCC--CCcEE--ccCCCccChhHHH
Q 027023 27 GNFECNICFDLA--QDPIV--TLCGHLFCWPCLY 56 (229)
Q Consensus 27 ~~~~C~ICld~~--~~pv~--l~CgH~FC~~CL~ 56 (229)
....|++|-+.+ .+.++ -.||-.+|..|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 456799999999 45555 4799999999953
No 133
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=58.74 E-value=2.2 Score=38.10 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=23.6
Q ss_pred CCCCccccccccCCCCcEEccC-----CCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLC-----GHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~C-----gH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
.+..-.||||-....-.++..= .|.+|.-|-.+|-.. ...||.|...
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---R~~Cp~Cg~~ 220 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---RIKCPYCGNT 220 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE-----TTS-TTT---
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---CCCCcCCCCC
Confidence 3455789999987765555432 467899999999774 4499999764
No 134
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=54.65 E-value=4.1 Score=38.28 Aligned_cols=47 Identities=23% Similarity=0.626 Sum_probs=0.0
Q ss_pred CCccccccccCCCCc--------------EEccCCCccChhHHHHHHhhC---CCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDP--------------IVTLCGHLFCWPCLYKWLHGH---SNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~p--------------v~l~CgH~FC~~CL~~wl~~~---s~~~~CPvCR~~v~ 76 (229)
....|||=+..+.-| |-+.|||++-+ ..|-... ....+||+||..-.
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccCC
Confidence 445688776555322 44789998765 3454322 13679999998544
No 135
>PLN02195 cellulose synthase A
Probab=52.15 E-value=16 Score=38.15 Aligned_cols=48 Identities=21% Similarity=0.514 Sum_probs=34.5
Q ss_pred CCccccccccCCC-----CcEE--ccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQ-----DPIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~-----~pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
....|.||-|..- ++-+ -.|+--.|.+|. +|=+ +.+.+.||.|+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer-~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEI-KEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhh-hcCCccCCccCCccc
Confidence 4457999998663 2222 368888999998 4444 336789999999877
No 136
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=51.29 E-value=8.1 Score=25.56 Aligned_cols=42 Identities=21% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+.+.||.|.+.+... .-+ .-|...... ......||+|...+.
T Consensus 1 ~~f~CP~C~~~~~~~--~L~-----~H~~~~H~~-~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES--SLV-----EHCEDEHRS-ESKNVVCPICSSRVT 42 (54)
T ss_pred CCcCCCCCCCccCHH--HHH-----HHHHhHCcC-CCCCccCCCchhhhh
Confidence 357899998844321 111 122222111 123578999986543
No 137
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=7.7 Score=36.32 Aligned_cols=41 Identities=29% Similarity=0.694 Sum_probs=27.9
Q ss_pred CccccccccCCCC-----cEEccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 28 NFECNICFDLAQD-----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 28 ~~~C~ICld~~~~-----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
-..|++|.-.+.. -++-.|||-||+.|...|...+. .|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~---~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNG---ECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCc---cccCc
Confidence 4568888865532 23334999999999999887433 55544
No 138
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=50.87 E-value=6.6 Score=35.73 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=33.1
Q ss_pred CCCccccccccCCCCcEEcc----CC--CccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 26 AGNFECNICFDLAQDPIVTL----CG--HLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~----Cg--H~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
+..-.||||-....-.++.. =| +.+|.-|-.+|-.. ...||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~---R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV---RVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc---CccCCCCCCC
Confidence 34568999998776544322 33 56799999999884 4599999763
No 139
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=50.12 E-value=7.6 Score=35.42 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=33.4
Q ss_pred CCCCccccccccCCCCcEEc---cCC--CccChhHHHHHHhhCCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDPIVT---LCG--HLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l---~Cg--H~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
.+..-.||||-....-.++. .=| |..|.-|-.+|-.. ...||.|..
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~---R~~C~~Cg~ 234 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV---RVKCSNCEQ 234 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc---CccCCCCCC
Confidence 34568899999887655432 233 56799999999884 459999975
No 140
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.01 E-value=9.3 Score=36.29 Aligned_cols=41 Identities=34% Similarity=0.686 Sum_probs=26.6
Q ss_pred CCcEEccCCCccChhHHHHHHhhC-----------------------CCCCCCCCccccccccc
Q 027023 39 QDPIVTLCGHLFCWPCLYKWLHGH-----------------------SNYRECPVCKATIEEEK 79 (229)
Q Consensus 39 ~~pv~l~CgH~FC~~CL~~wl~~~-----------------------s~~~~CPvCR~~v~~~~ 79 (229)
..+|.-.|||.||+.|...|-... .+...||.|..++.++.
T Consensus 177 ~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 177 SVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred ccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 345667899999999986443211 13456888888776543
No 141
>PF14353 CpXC: CpXC protein
Probab=48.33 E-value=14 Score=28.63 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=27.6
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.+||-|...+...+-+.-.-.--..=....+...-...+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 578888877765543322222222333444443334679999988765
No 142
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=47.94 E-value=13 Score=27.88 Aligned_cols=37 Identities=30% Similarity=0.784 Sum_probs=27.6
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...|.||......+ ||.||..|.+ ..-.|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY-------kkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY-------KKGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhc-------ccCcccccCCeec
Confidence 45799998765543 7899999964 2348999988764
No 143
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=47.75 E-value=9.9 Score=33.74 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=35.5
Q ss_pred CccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCcc
Q 027023 28 NFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCK 72 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR 72 (229)
+..|||-...+.+|++ ..|||+|=.+-+..++... ....||+-.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~-~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE-ITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC-ceeeccccc
Confidence 4679998888888876 6899999999999888842 356888843
No 144
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=47.30 E-value=19 Score=34.00 Aligned_cols=56 Identities=21% Similarity=0.479 Sum_probs=36.6
Q ss_pred CCccccccccCCCCc--EEccCCCccChhHHHHHHhhCC-------------------CC--CCCCCcccccccccccc
Q 027023 27 GNFECNICFDLAQDP--IVTLCGHLFCWPCLYKWLHGHS-------------------NY--RECPVCKATIEEEKLVP 82 (229)
Q Consensus 27 ~~~~C~ICld~~~~p--v~l~CgH~FC~~CL~~wl~~~s-------------------~~--~~CPvCR~~v~~~~l~p 82 (229)
...+|+||+-..-.. .+.-|....|..|+.+.-.... .. ..||.|...-.....++
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~ 151 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIK 151 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeec
Confidence 457999999766543 3456888999999976543221 12 58999987655433333
No 145
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.25 E-value=10 Score=21.66 Aligned_cols=8 Identities=25% Similarity=0.467 Sum_probs=3.8
Q ss_pred ccccccCC
Q 027023 31 CNICFDLA 38 (229)
Q Consensus 31 C~ICld~~ 38 (229)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55554433
No 146
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.07 E-value=15 Score=36.87 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=37.5
Q ss_pred cccccccCCCCcEEccCCC-ccChhHHHHHHhhC---CCCCCCCCcccccccc
Q 027023 30 ECNICFDLAQDPIVTLCGH-LFCWPCLYKWLHGH---SNYRECPVCKATIEEE 78 (229)
Q Consensus 30 ~C~ICld~~~~pv~l~CgH-~FC~~CL~~wl~~~---s~~~~CPvCR~~v~~~ 78 (229)
.|+||-....-...-.||| ..|..|..+..... .....||+||..+...
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5999998888777789999 79999998765422 1245789999877643
No 147
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=45.96 E-value=18 Score=33.24 Aligned_cols=50 Identities=10% Similarity=-0.091 Sum_probs=36.5
Q ss_pred CCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
...+|-+|-+-...-+..+|+|. ||..|.. +. ....||+|...+. .++|+
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s---~~~~~~~c~~~~~--~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--AS---ASPTSSTCDHNDH--TLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cc---cCCccccccccce--eeeec
Confidence 45678888887777777899995 9999976 33 3459999977654 44443
No 148
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=44.80 E-value=20 Score=24.53 Aligned_cols=43 Identities=26% Similarity=0.590 Sum_probs=28.1
Q ss_pred ccccccccCCCCc--EEccCC--CccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDP--IVTLCG--HLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~p--v~l~Cg--H~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|-.|-..+... ...-|. ..||..|....+.. .||.|...+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~-----~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG-----VCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC-----cCcCCCCccc
Confidence 3466676555322 223344 36999999988762 8999987665
No 149
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.39 E-value=4.6 Score=35.82 Aligned_cols=46 Identities=28% Similarity=0.585 Sum_probs=35.3
Q ss_pred CCccccccccCCC------CcEEcc--------CCCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 27 GNFECNICFDLAQ------DPIVTL--------CGHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 27 ~~~~C~ICld~~~------~pv~l~--------CgH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
....|.||...+. .|.++. |||..|..|+...+.... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--hcCCcccce
Confidence 3466999986665 244555 999999999999888643 799999864
No 150
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=44.01 E-value=5.6 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=16.8
Q ss_pred CCCccccccccCCCCc----EEccCCCccChhHHHHH
Q 027023 26 AGNFECNICFDLAQDP----IVTLCGHLFCWPCLYKW 58 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~w 58 (229)
.+...|.+|...+.-- .--.||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4567899999888432 12479999999997543
No 151
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.81 E-value=17 Score=21.17 Aligned_cols=35 Identities=17% Similarity=0.545 Sum_probs=20.5
Q ss_pred cccccccCCCCc--EEccCCCccChhHHHHHHhhCCCCCCCCCccccc
Q 027023 30 ECNICFDLAQDP--IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATI 75 (229)
Q Consensus 30 ~C~ICld~~~~p--v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v 75 (229)
.|..|.+.+.+. .+..=+..||..|+ .|..|+..+
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf-----------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECF-----------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCC-----------CCcccCCcC
Confidence 377787777653 33333555666554 577776554
No 152
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=42.84 E-value=30 Score=26.37 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=20.7
Q ss_pred CCccChhHHHHHHhhC------CCCCCCCCccccc
Q 027023 47 GHLFCWPCLYKWLHGH------SNYRECPVCKATI 75 (229)
Q Consensus 47 gH~FC~~CL~~wl~~~------s~~~~CPvCR~~v 75 (229)
.-.||..||....... .....||.||...
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 5569999998766532 2457899998743
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.65 E-value=22 Score=36.13 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=30.3
Q ss_pred cccccccCCCCcEE--ccCCCccChhHHHHHHhhCCCCCCCCC--cccccc
Q 027023 30 ECNICFDLAQDPIV--TLCGHLFCWPCLYKWLHGHSNYRECPV--CKATIE 76 (229)
Q Consensus 30 ~C~ICld~~~~pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPv--CR~~v~ 76 (229)
.|.+|...++.-.+ --|||.-|..|+++|+...+ .||. |.....
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s---~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKAS---PCAKSICPHLCH 828 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCC---CCccccCCcccc
Confidence 56677665553322 25999999999999999665 6665 654443
No 154
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=41.99 E-value=13 Score=37.68 Aligned_cols=53 Identities=26% Similarity=0.559 Sum_probs=39.1
Q ss_pred CCCCCccccccccCCCCcE----------EccCCCcc--------------------ChhHHHHHHhh-----CCCCCCC
Q 027023 24 SEAGNFECNICFDLAQDPI----------VTLCGHLF--------------------CWPCLYKWLHG-----HSNYREC 68 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv----------~l~CgH~F--------------------C~~CL~~wl~~-----~s~~~~C 68 (229)
...+-..|.-|++.+.||. .|.||-.| |..|+.+|-.. +.+...|
T Consensus 64 ippD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C 143 (711)
T TIGR00143 64 IPADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIAC 143 (711)
T ss_pred cCCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccC
Confidence 3456678999999988762 25787766 99999998653 2246799
Q ss_pred CCcccccc
Q 027023 69 PVCKATIE 76 (229)
Q Consensus 69 PvCR~~v~ 76 (229)
|.|.-.+.
T Consensus 144 ~~Cgp~l~ 151 (711)
T TIGR00143 144 PRCGPQLN 151 (711)
T ss_pred CCCCcEEE
Confidence 99976653
No 155
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA03240 envelope glycoprotein M; Provisional
Probab=41.72 E-value=24 Score=30.75 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 027023 209 YYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 209 ~~l~~~~~~~~~~~~~~l~~~ 229 (229)
..-.-++++|.+++|+-|++|
T Consensus 211 aH~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred chHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 157
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.23 E-value=20 Score=31.31 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=18.9
Q ss_pred ccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 49 LFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 49 ~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.-|..|-.+.-+ +...||+|++.-.
T Consensus 195 K~C~sC~qqIHR---NAPiCPlCK~KsR 219 (230)
T PF10146_consen 195 KTCQSCHQQIHR---NAPICPLCKAKSR 219 (230)
T ss_pred chhHhHHHHHhc---CCCCCcccccccc
Confidence 358899877666 5679999988544
No 158
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=40.20 E-value=18 Score=36.09 Aligned_cols=53 Identities=26% Similarity=0.511 Sum_probs=34.4
Q ss_pred CCccccccccCCCCcEE-ccCCCccChhHHHHHHhh--CCCCCCCCCcccccccccc
Q 027023 27 GNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHG--HSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~--~s~~~~CPvCR~~v~~~~l 80 (229)
..+.|+|+.-.+.-|+. ..|+|+=|.+-+ .++.. +.....||+|.+....+.+
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~-~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDAL-SYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchh-hhHHhccCCCeeeCccCCccccccch
Confidence 34779998877776644 578887666643 23332 2246799999887765443
No 159
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=38.76 E-value=40 Score=31.05 Aligned_cols=51 Identities=22% Similarity=0.520 Sum_probs=30.3
Q ss_pred CCCCccccccccCCC--------Cc-----------EEccCCCccChhHHHHHHhh----C---CCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQ--------DP-----------IVTLCGHLFCWPCLYKWLHG----H---SNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~--------~p-----------v~l~CgH~FC~~CL~~wl~~----~---s~~~~CPvCR~~v~ 76 (229)
...+.+||+|+.+-. ++ ...||||.--.+= ..||.+ + .-...||.|-..+.
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt-~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKT-VKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhh-hhHhhcCcCCCccccccccCcchhhhhc
Confidence 345788999995421 11 2358999644444 444442 1 12458999987665
No 160
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.53 E-value=10 Score=35.66 Aligned_cols=50 Identities=24% Similarity=0.609 Sum_probs=0.0
Q ss_pred CCccccccccCCC--------------C---c--EEccCCCccChhHHHHHHhh---CC---CCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQ--------------D---P--IVTLCGHLFCWPCLYKWLHG---HS---NYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~--------------~---p--v~l~CgH~FC~~CL~~wl~~---~s---~~~~CPvCR~~v~ 76 (229)
...+||+|+..-. | | +.-||||.--.+...-|-+. +. -...||.|-..+.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 4789999995421 1 1 23589997666666555541 11 1358999988776
No 162
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.49 E-value=41 Score=28.68 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027023 208 DYYLKRLLLFIGFCVLLVLIW 228 (229)
Q Consensus 208 ~~~l~~~~~~~~~~~~~~l~~ 228 (229)
+.|-+.+|..+..|+||++|+
T Consensus 50 ~~~~~~l~w~~I~FliL~~lL 70 (204)
T PRK09174 50 THYASQLLWLAITFGLFYLFM 70 (204)
T ss_pred hhccHHHHHHHHHHHHHHHHH
Confidence 557777776666666666554
No 163
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=38.49 E-value=6.1 Score=26.30 Aligned_cols=14 Identities=43% Similarity=1.353 Sum_probs=12.6
Q ss_pred cCCCccChhHHHHH
Q 027023 45 LCGHLFCWPCLYKW 58 (229)
Q Consensus 45 ~CgH~FC~~CL~~w 58 (229)
.|+|.||+.|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999998877
No 164
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=34.65 E-value=17 Score=33.46 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=30.5
Q ss_pred CCccccccccCCCCc--------------EEccCCCccChhHHHHHHhh---CCCCCCCCCccccccccccccccC
Q 027023 27 GNFECNICFDLAQDP--------------IVTLCGHLFCWPCLYKWLHG---HSNYRECPVCKATIEEEKLVPLYG 85 (229)
Q Consensus 27 ~~~~C~ICld~~~~p--------------v~l~CgH~FC~~CL~~wl~~---~s~~~~CPvCR~~v~~~~l~p~~~ 85 (229)
..-.||+=+..+..| |-+.|||+--. ..|=.. ..+..+||+||..- .++|++-
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~g---p~V~L~l 358 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVVG---PYVPLWL 358 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeeec---ceeeeec
Confidence 345688877655322 45789997432 123221 12467999998633 3556543
No 165
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=34.34 E-value=26 Score=30.31 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 027023 210 YLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 210 ~l~~~~~~~~~~~~~~l~~~ 229 (229)
-....|++|+++|++|-|+|
T Consensus 129 amLIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLF 148 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999998876
No 166
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=34.25 E-value=24 Score=30.94 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=18.1
Q ss_pred ccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 49 LFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 49 ~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.-|..|-.+.-+ +...||+|++...
T Consensus 250 K~ClsChqqIHR---NAPiCPlCKaKsR 274 (286)
T KOG4451|consen 250 KVCLSCHQQIHR---NAPICPLCKAKSR 274 (286)
T ss_pred hHHHHHHHHHhc---CCCCCcchhhccc
Confidence 347788776666 5679999987543
No 167
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.84 E-value=28 Score=22.68 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=21.2
Q ss_pred ccccccccCCCCc----EEccCCCccChhHHHHHH
Q 027023 29 FECNICFDLAQDP----IVTLCGHLFCWPCLYKWL 59 (229)
Q Consensus 29 ~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl 59 (229)
..|.+|...+.-- .-..||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 4688887655432 225799999999986443
No 168
>PF15616 TerY-C: TerY-C metal binding domain
Probab=33.81 E-value=26 Score=28.02 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.+.-.||-|-...--.+- .||+++|.. .++..+||-|.+...
T Consensus 75 ~g~PgCP~CGn~~~fa~C-~CGkl~Ci~--------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 75 IGAPGCPHCGNQYAFAVC-GCGKLFCID--------GEGEVTCPWCGNEGS 116 (131)
T ss_pred cCCCCCCCCcChhcEEEe-cCCCEEEeC--------CCCCEECCCCCCeee
Confidence 345789999887655544 899999974 235679999988665
No 169
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=46 Score=30.38 Aligned_cols=49 Identities=27% Similarity=0.619 Sum_probs=38.0
Q ss_pred CCCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...+..|-||...+.-|... .|+|-||..|...|.... ..||.|+..++
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~---~~~~d~~~~~~ 151 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMG---NDCPDCRGKIS 151 (324)
T ss_pred cCCccceeeeeeeEEecccccCceeeeeecCCchhhhhh---hccchhhcCcC
Confidence 34456788898888777554 499999999999998844 48999987665
No 170
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.98 E-value=20 Score=27.01 Aligned_cols=15 Identities=33% Similarity=0.895 Sum_probs=12.5
Q ss_pred ccChhHHHHHHhhCC
Q 027023 49 LFCWPCLYKWLHGHS 63 (229)
Q Consensus 49 ~FC~~CL~~wl~~~s 63 (229)
-||..||..|.+...
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999999543
No 171
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.76 E-value=13 Score=24.56 Aligned_cols=13 Identities=38% Similarity=1.053 Sum_probs=7.0
Q ss_pred CCCCccccccccc
Q 027023 67 ECPVCKATIEEEK 79 (229)
Q Consensus 67 ~CPvCR~~v~~~~ 79 (229)
.||+|.+++..++
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 8999999887543
No 172
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=31.93 E-value=18 Score=35.85 Aligned_cols=24 Identities=29% Similarity=0.701 Sum_probs=17.4
Q ss_pred ccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 44 TLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 44 l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
..|+++||..|+.+ ....||.|-+
T Consensus 535 ~~C~avfH~~C~~r------~s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR------KSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHhc------cCCCCCchHH
Confidence 46999999999753 2235999944
No 173
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.19 E-value=36 Score=22.74 Aligned_cols=25 Identities=32% Similarity=0.953 Sum_probs=13.5
Q ss_pred cCCCccChhHHHHHHhhCCCCCCCCCcc
Q 027023 45 LCGHLFCWPCLYKWLHGHSNYRECPVCK 72 (229)
Q Consensus 45 ~CgH~FC~~CL~~wl~~~s~~~~CPvCR 72 (229)
.|++.||.+|= -++.. .-..||-|.
T Consensus 26 ~C~~~FC~dCD-~fiHE--~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD-VFIHE--TLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH-HTTTT--TS-SSSTT-
T ss_pred CCCCccccCcC-hhhhc--cccCCcCCC
Confidence 68899999994 33332 345899883
No 174
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.74 E-value=29 Score=21.27 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=5.2
Q ss_pred cccccccCCC
Q 027023 30 ECNICFDLAQ 39 (229)
Q Consensus 30 ~C~ICld~~~ 39 (229)
+||-|...++
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 4555555444
No 175
>CHL00038 psbL photosystem II protein L
Probab=29.23 E-value=63 Score=20.15 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027023 211 LKRLLLFIGFCVLLVLI 227 (229)
Q Consensus 211 l~~~~~~~~~~~~~~l~ 227 (229)
|+|-.||.|.++|+.|.
T Consensus 13 LNRTSLy~GLLlifvl~ 29 (38)
T CHL00038 13 LNRTSLYWGLLLIFVLA 29 (38)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 77777777777666553
No 176
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=29.13 E-value=58 Score=33.73 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=14.3
Q ss_pred CCCCCCCccccccccCCCCc
Q 027023 22 SNSEAGNFECNICFDLAQDP 41 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~p 41 (229)
++...+-.+|.||+.++.-+
T Consensus 599 ~~~~TdPNqCiiC~rVlSC~ 618 (958)
T KOG1074|consen 599 ENKRTDPNQCIICLRVLSCP 618 (958)
T ss_pred ccccCCccceeeeeecccch
Confidence 34455668899999887643
No 177
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=28.85 E-value=32 Score=30.31 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=34.5
Q ss_pred CccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCC--cccccc
Q 027023 28 NFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPV--CKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPv--CR~~v~ 76 (229)
+.+|||-+....-|+. +.|.|.|=.+-|..+++.. -...||. |.+.+.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~-~trvcp~~~Csq~~~ 239 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVE-CTRVCPRLICSQKEV 239 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCC-ceeecchhhcchhee
Confidence 5689998887777765 6899999999998888832 1346665 544433
No 178
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.81 E-value=53 Score=26.27 Aligned_cols=27 Identities=33% Similarity=0.782 Sum_probs=18.8
Q ss_pred ccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 49 LFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 49 ~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
.||..|=..-+. .||.|.+++.-+..+
T Consensus 29 afcskcgeati~------qcp~csasirgd~~v 55 (160)
T COG4306 29 AFCSKCGEATIT------QCPICSASIRGDYYV 55 (160)
T ss_pred HHHhhhchHHHh------cCCccCCccccccee
Confidence 478888665444 699999988754433
No 179
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.31 E-value=20 Score=23.32 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=20.9
Q ss_pred ccccccCCCCc-EE-ccCCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 31 CNICFDLAQDP-IV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 31 C~ICld~~~~p-v~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
|..|.+.+... ++ ..-+..||..|+ +|-.|++.+...
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf-----------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF-----------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS-----------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc-----------ccCCCCCccCCC
Confidence 55566555432 22 356666666664 577777666543
No 180
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=27.62 E-value=25 Score=19.94 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=8.4
Q ss_pred CCCCCccccccc
Q 027023 66 RECPVCKATIEE 77 (229)
Q Consensus 66 ~~CPvCR~~v~~ 77 (229)
..||+|.+.+..
T Consensus 2 v~CPiC~~~v~~ 13 (26)
T smart00734 2 VQCPVCFREVPE 13 (26)
T ss_pred CcCCCCcCcccH
Confidence 368998777643
No 181
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=27.06 E-value=83 Score=20.73 Aligned_cols=20 Identities=25% Similarity=0.261 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027023 209 YYLKRLLLFIGFCVLLVLIW 228 (229)
Q Consensus 209 ~~l~~~~~~~~~~~~~~l~~ 228 (229)
.||---|-++.|++|+|+..
T Consensus 7 s~L~~~F~~lIC~Fl~~~~~ 26 (54)
T PF06716_consen 7 SYLLLAFGFLICLFLFCLVV 26 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34544555666666666543
No 182
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=26.98 E-value=68 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 206 QQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
|.+..--.+=+|+.++++.|+++|
T Consensus 34 qneYlt~MiGiWiVilFLtWf~lw 57 (67)
T PF10854_consen 34 QNEYLTIMIGIWIVILFLTWFLLW 57 (67)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 445544556677888888888764
No 183
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.45 E-value=61 Score=34.29 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=33.3
Q ss_pred CCCCCCccccccccCCCCcEEccCCC-----ccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGH-----LFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH-----~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
+.......|+-|-........-.||. .||..|-. ......||.|......
T Consensus 621 eVEVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~-----~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 621 EVEIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI-----EVEEDECEKCGREPTP 675 (1121)
T ss_pred eecccCccCCCCCCcCCcccCCCCCCCCCcceeCccccC-----cCCCCcCCCCCCCCCc
Confidence 34456678999988754444446884 59999922 2234679999886653
No 184
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=25.33 E-value=1.7e+02 Score=20.73 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027023 206 QQDYYLKRLLLFIGFCVLLVLI 227 (229)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~~~l~ 227 (229)
..|++|+|+-.++++++++.-+
T Consensus 47 ~~~~~L~k~T~il~~~F~i~~l 68 (76)
T PRK06870 47 GAENFLSRLTAVLAVLFFVLSL 68 (76)
T ss_pred cHhHHHHHHHHHHHHHHHHHHH
Confidence 3599999999888877765433
No 185
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=24.73 E-value=86 Score=22.91 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027023 208 DYYLKRLLLFIGFCVLLVLIW 228 (229)
Q Consensus 208 ~~~l~~~~~~~~~~~~~~l~~ 228 (229)
|.++=.+.+++.+++++|+++
T Consensus 69 D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 69 DRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 444444445555555556553
No 186
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.56 E-value=43 Score=27.60 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=21.5
Q ss_pred CCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 47 GHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 47 gH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
.+.||..|=.+-.. .||.|..+|.-+.
T Consensus 27 ~~~fC~kCG~~tI~------~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 27 REKFCSKCGAKTIT------SCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHHhhHHHHH------HCcCCCCCCCCce
Confidence 35699999887777 7999999887543
No 187
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.50 E-value=37 Score=27.25 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=13.6
Q ss_pred ccccCCCCcEEccCCCccChh
Q 027023 33 ICFDLAQDPIVTLCGHLFCWP 53 (229)
Q Consensus 33 ICld~~~~pv~l~CgH~FC~~ 53 (229)
||.+.-..-+.-.|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 455544443445799999975
No 188
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.31 E-value=50 Score=33.51 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 42 IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 42 v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
|..|-|-|||.+|-.+-.. .+.+|-+|-.
T Consensus 42 vqVPtGpWfCrKCesqera---arvrCeLCP~ 70 (900)
T KOG0956|consen 42 VQVPTGPWFCRKCESQERA---ARVRCELCPH 70 (900)
T ss_pred EecCCCchhhhhhhhhhhh---ccceeecccC
Confidence 4568899999999765333 3467777754
No 189
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.89 E-value=57 Score=27.61 Aligned_cols=38 Identities=34% Similarity=0.767 Sum_probs=25.0
Q ss_pred CccccccccC-CCCc-----EE--ccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 28 NFECNICFDL-AQDP-----IV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 28 ~~~C~ICld~-~~~p-----v~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
.+.|.+|.+. ..-| ++ -.|+-.||..|..+ ..||.|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------CCCCCcHh
Confidence 4678888742 2222 11 36899999999752 36999954
No 190
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=23.71 E-value=61 Score=26.10 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 172 DPTMYGPAASFPYGFTNSFHGGHAHGYPQHTGQGQQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
|...+|-..|.|+|..|+. | -++++|+|-++|-|.|
T Consensus 87 DeRlsteGTGL~lGlsn~~--------------------L--gwIL~gVf~lIWslY~ 122 (138)
T PF07123_consen 87 DERLSTEGTGLPLGLSNNL--------------------L--GWILLGVFGLIWSLYF 122 (138)
T ss_pred HHHhcCCCccccccccCch--------------------h--HHHHHHHHHHHHHHHH
Confidence 4566777778888875432 2 2567788888888765
No 191
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.71 E-value=24 Score=36.33 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=24.9
Q ss_pred CccccccccCCCCc--EEccCCCccChhHHHHHH
Q 027023 28 NFECNICFDLAQDP--IVTLCGHLFCWPCLYKWL 59 (229)
Q Consensus 28 ~~~C~ICld~~~~p--v~l~CgH~FC~~CL~~wl 59 (229)
...|-.|.....+- +-..|++.+|..|+..|.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 45688888776653 446899999999999984
No 192
>PF12773 DZR: Double zinc ribbon
Probab=23.55 E-value=68 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=14.1
Q ss_pred ccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 49 LFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 49 ~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.||..|=............||.|.+.+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 3455554333322223567888877544
No 193
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=43 Score=33.74 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=25.4
Q ss_pred ccccccccCCC----CcEEccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 29 FECNICFDLAQ----DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 29 ~~C~ICld~~~----~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
..|-+|...-. -+.++.|+-.||+.|- +.-.+ .|++|.-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~---~~~~~---~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACS---LDYAS---ISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhh---hhhhc---cCcccCc
Confidence 45788874322 2345689999999984 44222 7999954
No 194
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.86 E-value=65 Score=29.25 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027023 213 RLLLFIGFCVLLVLIW 228 (229)
Q Consensus 213 ~~~~~~~~~~~~~l~~ 228 (229)
-++++|.++||++|||
T Consensus 264 aIliIVLIMvIIYLIL 279 (299)
T PF02009_consen 264 AILIIVLIMVIIYLIL 279 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777888888887
No 195
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=22.79 E-value=1.9e+02 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 027023 213 RLLLFIGFCVLLVLI 227 (229)
Q Consensus 213 ~~~~~~~~~~~~~l~ 227 (229)
++-|++.|++++|+|
T Consensus 34 nfclilicllli~ii 48 (52)
T PF04272_consen 34 NFCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555555
No 196
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.77 E-value=78 Score=29.59 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=11.3
Q ss_pred CCCCccccccccCCCC
Q 027023 25 EAGNFECNICFDLAQD 40 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~ 40 (229)
++.+..||+|-|...-
T Consensus 12 edl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccccCcccc
Confidence 3455679999987653
No 197
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.72 E-value=61 Score=29.97 Aligned_cols=36 Identities=25% Similarity=0.620 Sum_probs=29.0
Q ss_pred CCCCccccccccCCCCcEEccCC--CccChhHHHHHHh
Q 027023 25 EAGNFECNICFDLAQDPIVTLCG--HLFCWPCLYKWLH 60 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~Cg--H~FC~~CL~~wl~ 60 (229)
...+..|..|.+.-..-.+.+|. |+-|..|..-|..
T Consensus 218 N~~ni~C~~Ctdv~~~vlvf~Cns~HvtC~dCFr~yc~ 255 (446)
T KOG0006|consen 218 NSRNITCITCTDVRSPVLVFQCNSRHVTCLDCFRLYCV 255 (446)
T ss_pred ccccceeEEecCCccceEEEecCCceeehHHhhhhHhh
Confidence 45678899998877766678998 9999999876544
No 198
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=22.53 E-value=37 Score=20.48 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=6.7
Q ss_pred CCCCCCccccc
Q 027023 65 YRECPVCKATI 75 (229)
Q Consensus 65 ~~~CPvCR~~v 75 (229)
...||.|+..+
T Consensus 25 ~v~C~~C~~~~ 35 (38)
T TIGR02098 25 KVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEE
Confidence 35677776554
No 199
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=22.52 E-value=1.1e+02 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 206 QQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
++.....+++++++++|+++.++|
T Consensus 63 ~r~~~~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 63 ERRDKTDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 457788899999998888876653
No 200
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=92 Score=32.72 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCccccccccCCCCcEEcc-CCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 27 GNFECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
+++.=||-...+.+||++| -++..+..=+.+++.. ..+=|.||.+++.+.+.|+-..
T Consensus 869 def~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs---~~tdPFNR~pLt~d~v~pn~eL 926 (943)
T KOG2042|consen 869 DEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS---DCTDPFNREPLTEDMVSPNEEL 926 (943)
T ss_pred hhhhCccccccCCCCccCCcccccccHHHHHHHHhc---CCCCccccccCchhhcCCCHHH
Confidence 4455577778889999998 8899999999998884 3477999999998888776544
No 201
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.26 E-value=37 Score=31.91 Aligned_cols=32 Identities=34% Similarity=0.736 Sum_probs=25.4
Q ss_pred CCCCccccccc-cCCCCcEEccCCCccChhHHH
Q 027023 25 EAGNFECNICF-DLAQDPIVTLCGHLFCWPCLY 56 (229)
Q Consensus 25 ~~~~~~C~ICl-d~~~~pv~l~CgH~FC~~CL~ 56 (229)
......|.=|- .....-..++||..||..||.
T Consensus 36 ~~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 36 ENGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred ccCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 34567899888 555566789999999999985
No 202
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=22.21 E-value=83 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 171 PDPTMYGPAASFPYGFTNSFHGGHAHGYPQHTGQGQQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
-|...+|-..|.|+|..|+. | -++++|++-++|-+.|
T Consensus 75 VDeRlsteGtGl~lGlsn~~--------------------L--gwIL~gVf~liw~ly~ 111 (128)
T PLN00077 75 VDERMSTEGTGLSLGLSNNL--------------------L--GWILLGVFGLIWSLYT 111 (128)
T ss_pred HhHhhcCCCccccccccCch--------------------h--hHHHHhHHHHHHHHHh
Confidence 35566777778888875422 2 2567788888887764
No 203
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=22.20 E-value=1.8e+02 Score=18.99 Aligned_cols=16 Identities=19% Similarity=0.305 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 027023 213 RLLLFIGFCVLLVLIW 228 (229)
Q Consensus 213 ~~~~~~~~~~~~~l~~ 228 (229)
++-|++.|+.++|+|.
T Consensus 34 nf~lilicllli~iiv 49 (52)
T TIGR01294 34 NFCLILICLLLICIIV 49 (52)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555566553
No 204
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.84 E-value=76 Score=28.79 Aligned_cols=17 Identities=6% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027023 212 KRLLLFIGFCVLLVLIW 228 (229)
Q Consensus 212 ~~~~~~~~~~~~~~l~~ 228 (229)
=++|.++.+|+|+|+|+
T Consensus 293 vkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 293 VKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35666666666666554
No 205
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=21.81 E-value=85 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhC
Q 027023 171 PDPTMYGPAASFPYGFTNSFHGGHAHGYPQHTGQGQQDYYLKRLLLFIGFCVLLVLIWQ 229 (229)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 229 (229)
-|...+|-..|.|+|..|+. | -++++|++-++|-+.|
T Consensus 85 VDeRlsteGTGlplGlsn~~--------------------L--gwIL~gVf~lIWslYf 121 (137)
T PLN00092 85 VDERMSTEGTGLPFGLSNNL--------------------L--GWILLGVFGLIWSLYF 121 (137)
T ss_pred HHHhhcCCCccccccccCcc--------------------h--hhHHHhHHHHHHHHHh
Confidence 35666777788888875432 2 2567788888887765
No 206
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=21.59 E-value=11 Score=24.91 Aligned_cols=14 Identities=43% Similarity=1.246 Sum_probs=11.9
Q ss_pred cCCCccChhHHHHH
Q 027023 45 LCGHLFCWPCLYKW 58 (229)
Q Consensus 45 ~CgH~FC~~CL~~w 58 (229)
.|++.||+.|-..|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 45 SCGTEFCFKCGEPW 58 (64)
T ss_dssp SCCSEECSSSTSES
T ss_pred CCCCcCccccCccc
Confidence 49999999998766
No 207
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.38 E-value=36 Score=34.82 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=25.9
Q ss_pred CCccccccccCCC-------CcEEccCCCccChhHHHHHHh
Q 027023 27 GNFECNICFDLAQ-------DPIVTLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 27 ~~~~C~ICld~~~-------~pv~l~CgH~FC~~CL~~wl~ 60 (229)
.+..|..|.+... .-++..|||.|+..|+.....
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 3448999987654 235689999999999976655
No 208
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.91 E-value=64 Score=28.04 Aligned_cols=20 Identities=25% Similarity=0.838 Sum_probs=13.6
Q ss_pred cccccccCCCCcEEccCCCccChhHHHH
Q 027023 30 ECNICFDLAQDPIVTLCGHLFCWPCLYK 57 (229)
Q Consensus 30 ~C~ICld~~~~pv~l~CgH~FC~~CL~~ 57 (229)
.|+||. ....+.+|..|+..
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHH
Confidence 488887 34556678888754
No 209
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.90 E-value=63 Score=19.13 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=7.4
Q ss_pred CCCCCCcccc
Q 027023 65 YRECPVCKAT 74 (229)
Q Consensus 65 ~~~CPvCR~~ 74 (229)
...||+|.+.
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4589999764
No 210
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.39 E-value=51 Score=33.07 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=34.9
Q ss_pred CCCCccccccccCCCC-----cEEccCCCccChhHHHHHHhhC--CCCCCCCCccccc
Q 027023 25 EAGNFECNICFDLAQD-----PIVTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATI 75 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~-----pv~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v 75 (229)
......|+||-..=.. .....|+-.|+..|+..|+.+. ++...||-||.-.
T Consensus 15 ~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 15 IIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 3345678888643332 2335789999999999998854 4557899987643
Done!