Query 027023
Match_columns 229
No_of_seqs 300 out of 1945
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.6 3.1E-15 1.1E-19 105.4 7.3 62 20-84 7-69 (72)
2 2ysl_A Tripartite motif-contai 99.6 8.1E-15 2.8E-19 103.0 7.2 59 22-80 14-72 (73)
3 2d8t_A Dactylidin, ring finger 99.5 3.2E-15 1.1E-19 105.1 4.8 57 22-81 9-65 (71)
4 2ecw_A Tripartite motif-contai 99.5 2E-14 6.9E-19 103.2 8.9 66 23-88 14-82 (85)
5 2ecv_A Tripartite motif-contai 99.5 2.5E-14 8.5E-19 102.7 8.2 66 23-88 14-82 (85)
6 2yur_A Retinoblastoma-binding 99.5 2.3E-14 8E-19 101.6 7.0 56 20-76 7-63 (74)
7 3ng2_A RNF4, snurf, ring finge 99.5 5.6E-15 1.9E-19 103.2 3.3 58 24-84 6-70 (71)
8 2csy_A Zinc finger protein 183 99.5 2.1E-14 7.3E-19 103.2 6.5 53 21-76 8-60 (81)
9 2egp_A Tripartite motif-contai 99.5 7.4E-15 2.5E-19 104.6 4.0 66 23-88 7-76 (79)
10 1t1h_A Gspef-atpub14, armadill 99.5 2.1E-14 7.1E-19 102.4 5.4 61 25-87 5-65 (78)
11 2ecy_A TNF receptor-associated 99.5 2.2E-14 7.5E-19 99.3 5.2 57 22-80 9-65 (66)
12 2ct2_A Tripartite motif protei 99.5 7.1E-14 2.4E-18 101.3 8.0 59 22-80 9-71 (88)
13 2ect_A Ring finger protein 126 99.5 4.8E-14 1.6E-18 100.4 6.6 60 21-83 8-70 (78)
14 3ztg_A E3 ubiquitin-protein li 99.5 3.5E-14 1.2E-18 104.2 6.0 64 21-85 6-71 (92)
15 2ysj_A Tripartite motif-contai 99.5 8.3E-14 2.8E-18 95.4 7.4 50 22-71 14-63 (63)
16 1wgm_A Ubiquitin conjugation f 99.5 9.3E-14 3.2E-18 104.3 6.9 62 24-88 18-80 (98)
17 2ea6_A Ring finger protein 4; 99.5 3.8E-14 1.3E-18 98.1 4.3 52 23-77 10-68 (69)
18 2kr4_A Ubiquitin conjugation f 99.4 1.3E-13 4.4E-18 100.8 6.4 61 24-87 10-70 (85)
19 2xeu_A Ring finger protein 4; 99.4 3.6E-14 1.2E-18 96.8 2.8 55 27-84 2-63 (64)
20 2kre_A Ubiquitin conjugation f 99.4 2.6E-13 8.8E-18 102.2 6.5 63 23-88 24-86 (100)
21 2ecj_A Tripartite motif-contai 99.4 2.7E-13 9.3E-18 90.8 5.7 50 22-71 9-58 (58)
22 3lrq_A E3 ubiquitin-protein li 99.4 1.1E-13 3.6E-18 103.8 3.7 59 25-85 19-78 (100)
23 2ecn_A Ring finger protein 141 99.4 1.5E-13 5.1E-18 95.9 4.0 53 23-79 10-62 (70)
24 1jm7_A BRCA1, breast cancer ty 99.4 2.7E-13 9.2E-18 102.6 4.7 60 27-86 20-79 (112)
25 2ep4_A Ring finger protein 24; 99.4 5.5E-13 1.9E-17 94.0 5.8 53 21-76 8-63 (74)
26 1x4j_A Ring finger protein 38; 99.4 3.1E-13 1.1E-17 95.7 4.5 51 24-77 19-72 (75)
27 1g25_A CDK-activating kinase a 99.4 3.2E-13 1.1E-17 93.1 3.8 56 27-84 2-62 (65)
28 1chc_A Equine herpes virus-1 r 99.4 1E-12 3.5E-17 91.0 6.4 48 26-76 3-51 (68)
29 2kiz_A E3 ubiquitin-protein li 99.4 8.4E-13 2.9E-17 91.8 5.9 53 22-77 8-63 (69)
30 2y43_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 99.8 3.5 58 26-86 20-78 (99)
31 3fl2_A E3 ubiquitin-protein li 99.3 4.4E-13 1.5E-17 103.8 3.6 50 26-77 50-99 (124)
32 2yu4_A E3 SUMO-protein ligase 99.3 9E-13 3.1E-17 97.9 4.9 64 25-88 4-74 (94)
33 4ayc_A E3 ubiquitin-protein li 99.3 5.5E-13 1.9E-17 105.4 3.6 48 27-77 52-99 (138)
34 2ecm_A Ring finger and CHY zin 99.3 1.3E-12 4.6E-17 86.6 4.6 48 26-76 3-54 (55)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 7.6E-13 2.6E-17 102.2 3.8 59 25-86 4-69 (133)
36 3hct_A TNF receptor-associated 99.3 1.5E-12 5.2E-17 100.1 4.9 61 22-84 12-72 (118)
37 1iym_A EL5; ring-H2 finger, ub 99.3 2.2E-12 7.4E-17 85.7 4.7 48 26-76 3-54 (55)
38 2c2l_A CHIP, carboxy terminus 99.3 2.2E-12 7.4E-17 111.3 5.9 63 24-88 204-266 (281)
39 2ckl_A Polycomb group ring fin 99.3 1.3E-12 4.5E-17 98.8 3.9 51 25-78 12-63 (108)
40 2l0b_A E3 ubiquitin-protein li 99.3 2.2E-12 7.5E-17 95.0 4.3 49 25-76 37-88 (91)
41 1z6u_A NP95-like ring finger p 99.3 2E-12 6.7E-17 104.0 4.2 55 27-83 77-132 (150)
42 3l11_A E3 ubiquitin-protein li 99.3 9.2E-13 3.1E-17 100.6 1.5 52 24-77 11-62 (115)
43 3knv_A TNF receptor-associated 99.3 9.1E-13 3.1E-17 105.0 1.5 51 24-76 27-77 (141)
44 1rmd_A RAG1; V(D)J recombinati 99.2 5.6E-12 1.9E-16 96.4 4.3 54 26-81 21-74 (116)
45 2ckl_B Ubiquitin ligase protei 99.2 4.2E-12 1.4E-16 102.9 3.6 48 27-76 53-101 (165)
46 1v87_A Deltex protein 2; ring- 99.2 1.7E-11 5.7E-16 93.2 6.3 51 27-77 24-94 (114)
47 1e4u_A Transcriptional repress 99.2 2.4E-11 8.1E-16 87.5 6.6 54 25-80 8-65 (78)
48 4ap4_A E3 ubiquitin ligase RNF 99.2 4.3E-12 1.5E-16 97.9 2.7 57 25-84 69-132 (133)
49 1jm7_B BARD1, BRCA1-associated 99.2 2.6E-12 9E-17 98.6 1.4 55 26-85 20-75 (117)
50 2ecl_A Ring-box protein 2; RNF 99.2 1.1E-11 3.7E-16 89.5 4.4 50 27-79 14-78 (81)
51 2f42_A STIP1 homology and U-bo 99.2 1.1E-11 3.7E-16 102.6 4.9 62 24-87 102-163 (179)
52 1bor_A Transcription factor PM 99.2 2.9E-12 9.9E-17 86.2 0.7 46 25-76 3-48 (56)
53 2vje_A E3 ubiquitin-protein li 99.1 1.6E-11 5.6E-16 84.8 3.1 54 26-84 6-62 (64)
54 3hcs_A TNF receptor-associated 99.1 2.4E-11 8.3E-16 98.7 4.1 59 23-83 13-71 (170)
55 2vje_B MDM4 protein; proto-onc 99.1 1.9E-11 6.4E-16 84.3 2.8 55 25-84 4-61 (63)
56 2ea5_A Cell growth regulator w 99.1 9.7E-11 3.3E-15 82.0 5.7 54 22-84 9-63 (68)
57 2bay_A PRE-mRNA splicing facto 99.1 6.1E-11 2.1E-15 81.5 3.9 56 28-86 3-59 (61)
58 4ic3_A E3 ubiquitin-protein li 99.1 2.8E-11 9.6E-16 85.8 1.8 45 26-77 22-67 (74)
59 2ecg_A Baculoviral IAP repeat- 99.1 9.7E-12 3.3E-16 88.3 -0.9 44 27-77 24-68 (75)
60 2y1n_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 106.7 5.2 53 27-81 331-383 (389)
61 3dpl_R Ring-box protein 1; ubi 99.0 1.9E-10 6.5E-15 87.4 4.9 47 27-76 36-100 (106)
62 3htk_C E3 SUMO-protein ligase 99.0 2.6E-10 9.1E-15 99.2 5.4 61 25-86 178-241 (267)
63 2d8s_A Cellular modulator of i 98.9 1.6E-09 5.5E-14 78.3 6.8 52 25-77 12-70 (80)
64 2yho_A E3 ubiquitin-protein li 98.8 8.9E-10 3.1E-14 79.2 2.0 49 27-84 17-66 (79)
65 4a0k_B E3 ubiquitin-protein li 98.8 4.7E-10 1.6E-14 86.8 0.6 48 27-77 47-112 (117)
66 2ct0_A Non-SMC element 1 homol 98.8 1.2E-08 4E-13 72.8 6.6 57 19-76 6-63 (74)
67 1wim_A KIAA0161 protein; ring 98.8 2.1E-09 7.2E-14 79.2 2.0 55 26-80 3-69 (94)
68 3t6p_A Baculoviral IAP repeat- 98.7 4.8E-09 1.6E-13 94.9 2.1 45 26-77 293-338 (345)
69 3k1l_B Fancl; UBC, ring, RWD, 98.4 1.5E-07 5.1E-12 84.8 3.0 56 22-77 302-373 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.4E-07 1.5E-11 61.8 3.7 51 25-76 3-58 (60)
71 3vk6_A E3 ubiquitin-protein li 97.9 9.9E-06 3.4E-10 60.5 3.7 46 30-77 3-49 (101)
72 3nw0_A Non-structural maintena 97.1 0.00065 2.2E-08 58.1 5.4 49 27-76 179-228 (238)
73 3m62_A Ubiquitin conjugation f 96.5 0.0021 7.1E-08 64.7 4.7 63 24-89 887-950 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0017 5.9E-08 47.5 2.4 34 27-60 2-38 (101)
75 2cs3_A Protein C14ORF4, MY039 96.2 0.0068 2.3E-07 43.4 4.7 46 25-70 12-63 (93)
76 2ko5_A Ring finger protein Z; 94.7 0.27 9.3E-06 36.1 9.0 48 27-78 27-74 (99)
77 1weo_A Cellulose synthase, cat 89.3 3 0.0001 30.1 8.6 54 27-82 15-75 (93)
78 2lri_C Autoimmune regulator; Z 88.3 0.52 1.8E-05 32.1 3.9 50 25-74 9-59 (66)
79 3i2d_A E3 SUMO-protein ligase 87.6 0.58 2E-05 42.3 4.8 54 27-81 248-304 (371)
80 2lv9_A Histone-lysine N-methyl 86.8 0.27 9.1E-06 36.0 1.8 49 24-73 24-75 (98)
81 1weu_A Inhibitor of growth fam 86.7 0.89 3E-05 33.0 4.5 46 26-75 34-86 (91)
82 4fo9_A E3 SUMO-protein ligase 85.5 0.87 3E-05 41.0 4.8 53 28-81 215-270 (360)
83 1wen_A Inhibitor of growth fam 85.2 0.92 3.2E-05 31.2 3.8 49 25-76 13-67 (71)
84 1wem_A Death associated transc 83.7 0.36 1.2E-05 33.4 1.2 51 23-74 11-70 (76)
85 1x64_A Alpha-actinin-2 associa 83.6 2.4 8.2E-05 29.6 5.6 42 25-77 22-63 (89)
86 1x62_A C-terminal LIM domain p 82.4 1.5 5.3E-05 29.9 4.1 40 27-77 14-53 (79)
87 2k16_A Transcription initiatio 82.1 0.31 1.1E-05 33.6 0.3 53 25-77 15-71 (75)
88 1wep_A PHF8; structural genomi 78.4 2.9 9.9E-05 29.0 4.4 52 23-75 7-64 (79)
89 1wd2_A Ariadne-1 protein homol 76.7 0.48 1.6E-05 31.6 -0.1 35 28-62 6-48 (60)
90 1wil_A KIAA1045 protein; ring 76.6 5.4 0.00019 28.6 5.4 49 23-72 10-74 (89)
91 3ttc_A HYPF, transcriptional r 76.2 1 3.4E-05 43.7 1.9 53 23-75 12-99 (657)
92 3o70_A PHD finger protein 13; 75.5 0.47 1.6E-05 32.4 -0.5 53 20-73 11-66 (68)
93 4g9i_A Hydrogenase maturation 74.7 1.5 5.2E-05 43.2 2.8 54 23-76 101-189 (772)
94 2l5u_A Chromodomain-helicase-D 74.6 1.6 5.6E-05 28.9 2.1 48 24-73 7-57 (61)
95 3vth_A Hydrogenase maturation 74.4 1.6 5.3E-05 43.1 2.8 53 23-75 106-193 (761)
96 1wev_A Riken cDNA 1110020M19; 73.6 0.26 8.9E-06 35.4 -2.2 51 25-75 13-73 (88)
97 1wew_A DNA-binding family prot 71.2 1.8 6.2E-05 30.0 1.8 49 25-74 13-72 (78)
98 2dar_A PDZ and LIM domain prot 70.6 5.1 0.00018 27.9 4.1 41 26-77 23-63 (90)
99 2l43_A N-teminal domain from h 70.4 1.6 5.3E-05 31.3 1.3 55 21-76 18-77 (88)
100 2lbm_A Transcriptional regulat 69.5 4.7 0.00016 31.5 4.0 49 25-73 60-116 (142)
101 1mm2_A MI2-beta; PHD, zinc fin 68.7 1.9 6.6E-05 28.5 1.4 51 25-75 6-57 (61)
102 1fp0_A KAP-1 corepressor; PHD 66.5 5.5 0.00019 28.5 3.6 55 19-73 16-71 (88)
103 1x4u_A Zinc finger, FYVE domai 66.1 4.9 0.00017 28.1 3.2 32 25-56 11-46 (84)
104 2d8v_A Zinc finger FYVE domain 64.8 4.9 0.00017 27.4 2.8 33 25-58 5-38 (67)
105 2yql_A PHD finger protein 21A; 64.7 1 3.4E-05 29.3 -0.7 49 25-73 6-55 (56)
106 1m3v_A FLIN4, fusion of the LI 62.4 5 0.00017 29.7 2.8 49 29-80 33-84 (122)
107 1wfk_A Zinc finger, FYVE domai 62.2 3.9 0.00013 29.1 2.1 32 26-57 7-42 (88)
108 1z2q_A LM5-1; membrane protein 61.7 4 0.00014 28.6 2.0 33 25-57 18-54 (84)
109 1we9_A PHD finger family prote 61.5 1.1 3.7E-05 29.7 -1.0 49 25-73 3-57 (64)
110 2yw8_A RUN and FYVE domain-con 60.9 4.4 0.00015 28.3 2.1 32 25-56 16-51 (82)
111 3ql9_A Transcriptional regulat 60.7 8.2 0.00028 29.6 3.8 49 25-73 54-110 (129)
112 3u5n_A E3 ubiquitin-protein li 60.6 1.7 5.8E-05 35.6 -0.1 50 26-75 5-55 (207)
113 2yt5_A Metal-response element- 60.5 1.5 5.2E-05 29.2 -0.4 51 25-75 3-62 (66)
114 3o36_A Transcription intermedi 57.4 3.3 0.00011 33.2 1.0 48 27-74 3-51 (184)
115 1vfy_A Phosphatidylinositol-3- 56.9 6.6 0.00023 26.7 2.4 29 28-56 11-43 (73)
116 2e6r_A Jumonji/ARID domain-con 55.2 1.4 4.8E-05 31.7 -1.4 52 23-74 11-66 (92)
117 1wee_A PHD finger family prote 55.1 1.6 5.4E-05 29.8 -1.1 50 23-73 11-65 (72)
118 1f62_A Transcription factor WS 55.1 5 0.00017 25.1 1.4 44 30-73 2-49 (51)
119 2d8y_A Eplin protein; LIM doma 54.2 19 0.00064 24.9 4.6 40 27-77 14-54 (91)
120 2cor_A Pinch protein; LIM doma 54.1 12 0.00042 25.3 3.5 41 26-77 13-53 (79)
121 2o35_A Hypothetical protein DU 53.7 5.1 0.00017 29.5 1.4 13 49-61 42-54 (105)
122 3fyb_A Protein of unknown func 53.5 5.2 0.00018 29.4 1.4 13 49-61 41-53 (104)
123 3t7l_A Zinc finger FYVE domain 53.2 4.8 0.00016 28.7 1.2 32 27-58 19-54 (90)
124 1joc_A EEA1, early endosomal a 53.1 4.7 0.00016 30.6 1.2 30 27-56 68-101 (125)
125 2dj7_A Actin-binding LIM prote 52.4 13 0.00045 25.3 3.4 39 27-76 14-53 (80)
126 2rgt_A Fusion of LIM/homeobox 51.9 15 0.0005 28.6 4.1 46 27-77 32-77 (169)
127 2puy_A PHD finger protein 21A; 51.4 1.8 6.3E-05 28.3 -1.2 50 26-75 3-53 (60)
128 1dvp_A HRS, hepatocyte growth 50.8 15 0.0005 30.1 4.1 32 25-56 158-193 (220)
129 2l4z_A DNA endonuclease RBBP8, 50.7 14 0.00046 27.6 3.5 39 27-76 60-99 (123)
130 3zyq_A Hepatocyte growth facto 48.9 10 0.00036 31.4 2.9 33 25-57 161-197 (226)
131 2jmi_A Protein YNG1, ING1 homo 48.1 3.8 0.00013 29.5 -0.0 47 24-73 22-75 (90)
132 3mpx_A FYVE, rhogef and PH dom 48.1 3.8 0.00013 36.7 0.0 50 26-75 373-430 (434)
133 1wfl_A Zinc finger protein 216 45.9 42 0.0014 23.2 5.1 27 27-53 24-51 (74)
134 2d8x_A Protein pinch; LIM doma 45.8 13 0.00046 24.1 2.5 39 28-77 5-43 (70)
135 1wg2_A Zinc finger (AN1-like) 45.7 31 0.001 23.2 4.2 28 26-53 13-41 (64)
136 2co8_A NEDD9 interacting prote 44.9 24 0.00083 23.9 3.9 41 27-78 14-55 (82)
137 1xwh_A Autoimmune regulator; P 44.0 4.5 0.00015 27.0 -0.2 49 25-73 5-54 (66)
138 3mjh_B Early endosome antigen 43.6 4.1 0.00014 24.1 -0.3 12 29-40 6-17 (34)
139 2ysm_A Myeloid/lymphoid or mix 43.2 10 0.00035 27.6 1.7 46 27-72 6-55 (111)
140 2vnf_A ING 4, P29ING4, inhibit 43.1 3.2 0.00011 27.3 -1.0 44 26-73 8-58 (60)
141 1y02_A CARP2, FYVE-ring finger 42.8 12 0.00042 28.2 2.1 46 25-73 16-65 (120)
142 2xqn_T Testin, TESS; metal-bin 42.8 16 0.00054 26.8 2.8 46 27-77 29-75 (126)
143 2pv0_B DNA (cytosine-5)-methyl 42.7 31 0.001 31.2 5.1 49 26-74 91-148 (386)
144 2jtn_A LIM domain-binding prot 42.5 16 0.00053 28.8 2.9 14 28-41 60-73 (182)
145 1wfh_A Zinc finger (AN1-like) 40.3 38 0.0013 22.7 4.0 29 25-53 12-41 (64)
146 2xjy_A Rhombotin-2; oncoprotei 40.2 20 0.00067 26.4 3.0 48 27-77 28-78 (131)
147 2d8z_A Four and A half LIM dom 39.7 29 0.00098 22.4 3.4 37 29-76 6-42 (70)
148 2ro1_A Transcription intermedi 39.3 9.1 0.00031 30.9 1.0 47 28-74 2-49 (189)
149 2cu8_A Cysteine-rich protein 2 39.1 21 0.00072 23.6 2.7 39 28-77 9-48 (76)
150 2ffw_A Midline-1; B-BOX, ring 39.0 78 0.0027 21.4 5.7 32 26-57 28-62 (78)
151 2gmg_A Hypothetical protein PF 38.7 14 0.00048 27.4 1.8 26 41-74 68-93 (105)
152 1wyh_A SLIM 2, skeletal muscle 38.6 25 0.00086 22.8 3.0 37 29-76 6-44 (72)
153 2fiy_A Protein FDHE homolog; F 38.0 3.7 0.00013 36.1 -1.7 46 26-74 180-231 (309)
154 1x4l_A Skeletal muscle LIM-pro 37.1 32 0.0011 22.4 3.3 38 28-76 5-46 (72)
155 1nyp_A Pinch protein; LIM doma 37.0 15 0.00051 23.6 1.6 38 28-76 5-42 (66)
156 1x4w_A Hypothetical protein FL 36.9 17 0.00058 24.7 1.9 29 25-53 12-44 (67)
157 2cur_A Skeletal muscle LIM-pro 36.6 20 0.00069 23.2 2.2 37 29-76 6-42 (69)
158 1rut_X Flinc4, fusion protein 36.2 11 0.00036 30.1 0.9 48 27-77 31-81 (188)
159 3c6w_A P28ING5, inhibitor of g 36.1 5 0.00017 26.4 -0.9 45 26-73 7-57 (59)
160 1wig_A KIAA1808 protein; LIM d 35.6 18 0.00063 24.0 1.9 37 29-76 6-42 (73)
161 2vpb_A Hpygo1, pygopus homolog 35.2 15 0.00052 24.5 1.4 48 25-72 5-64 (65)
162 2cuq_A Four and A half LIM dom 34.7 46 0.0016 22.0 4.0 37 29-76 16-52 (80)
163 1x68_A FHL5 protein; four-and- 34.4 20 0.00069 23.8 2.0 38 29-77 6-47 (76)
164 1v6g_A Actin binding LIM prote 34.3 17 0.00058 24.4 1.6 38 29-77 16-53 (81)
165 1g47_A Pinch protein; LIM doma 33.9 27 0.00092 23.0 2.6 40 27-77 10-51 (77)
166 2jne_A Hypothetical protein YF 33.5 1.8 6.1E-05 31.8 -3.7 41 28-76 32-72 (101)
167 2cot_A Zinc finger protein 435 33.0 93 0.0032 19.7 5.4 42 25-77 15-58 (77)
168 1x63_A Skeletal muscle LIM-pro 33.0 57 0.002 21.6 4.2 39 28-77 15-55 (82)
169 1x6a_A LIMK-2, LIM domain kina 32.5 44 0.0015 22.2 3.5 37 29-76 16-52 (81)
170 2jmo_A Parkin; IBR, E3 ligase, 32.4 3.3 0.00011 28.8 -2.4 16 45-60 55-70 (80)
171 2ee8_A Protein ODD-skipped-rel 32.1 1.1E+02 0.0039 20.4 6.0 16 25-40 14-29 (106)
172 1x4k_A Skeletal muscle LIM-pro 31.4 23 0.0008 22.9 1.9 37 29-76 6-44 (72)
173 2dlo_A Thyroid receptor-intera 31.4 18 0.00061 24.3 1.3 39 27-76 14-52 (81)
174 2g6q_A Inhibitor of growth pro 31.3 6.7 0.00023 26.0 -0.9 44 26-73 9-59 (62)
175 1x61_A Thyroid receptor intera 30.3 58 0.002 21.0 3.8 32 29-60 34-66 (72)
176 1x6e_A Zinc finger protein 24; 30.3 61 0.0021 20.4 3.9 41 26-77 12-54 (72)
177 1wjp_A Zinc finger protein 295 30.3 51 0.0017 22.5 3.7 17 25-41 13-29 (107)
178 1zbd_B Rabphilin-3A; G protein 30.1 16 0.00053 28.1 0.9 49 26-74 53-107 (134)
179 1wff_A Riken cDNA 2810002D23 p 29.9 1.4E+02 0.0046 21.1 5.8 29 25-53 22-52 (85)
180 2cup_A Skeletal muscle LIM-pro 29.6 18 0.00062 25.2 1.2 45 27-76 32-77 (101)
181 1x3h_A Leupaxin; paxillin fami 29.4 50 0.0017 21.8 3.4 38 29-77 16-53 (80)
182 1jdm_A Sarcolipin; helix, memb 29.3 48 0.0016 18.8 2.6 20 208-228 7-26 (31)
183 1z60_A TFIIH basal transcripti 28.8 31 0.0011 22.7 2.1 40 29-71 16-58 (59)
184 3a1b_A DNA (cytosine-5)-methyl 28.7 52 0.0018 26.0 3.8 46 25-73 76-133 (159)
185 2rdd_B UPF0092 membrane protei 27.9 37 0.0013 19.9 2.2 16 213-228 5-20 (37)
186 2eps_A POZ-, at HOOK-, and zin 27.5 99 0.0034 18.2 4.3 39 27-76 11-52 (54)
187 2ri7_A Nucleosome-remodeling f 26.9 8.3 0.00029 30.3 -1.2 49 25-74 5-59 (174)
188 1tac_A TAT protein; transcript 26.7 1E+02 0.0035 21.8 4.5 34 43-89 19-52 (86)
189 3shb_A E3 ubiquitin-protein li 26.5 11 0.00036 26.2 -0.6 44 30-73 28-76 (77)
190 2zet_C Melanophilin; complex, 26.5 26 0.00088 27.5 1.6 46 27-74 67-117 (153)
191 2e6s_A E3 ubiquitin-protein li 25.4 49 0.0017 22.6 2.7 44 30-73 28-76 (77)
192 1fjk_A Cardiac phospholamban; 25.3 1.1E+02 0.0036 19.2 3.9 16 213-228 34-49 (52)
193 4gne_A Histone-lysine N-methyl 25.0 30 0.001 25.5 1.6 47 25-76 12-64 (107)
194 1b8t_A Protein (CRP1); LIM dom 24.8 57 0.0019 25.7 3.4 34 27-60 33-67 (192)
195 1iml_A CRIP, cysteine rich int 23.8 27 0.00093 23.0 1.1 42 27-73 26-69 (76)
196 2epr_A POZ-, at HOOK-, and zin 23.2 1.1E+02 0.0036 17.4 3.8 36 26-72 10-47 (48)
197 3v43_A Histone acetyltransfera 22.2 23 0.00078 25.9 0.5 29 45-73 82-111 (112)
198 2l3k_A Rhombotin-2, linker, LI 21.4 38 0.0013 24.8 1.6 34 27-60 35-70 (123)
199 2jrp_A Putative cytoplasmic pr 20.9 4.2 0.00014 28.8 -3.6 40 29-76 3-42 (81)
200 1j2o_A FLIN2, fusion of rhombo 20.7 64 0.0022 23.1 2.7 34 27-60 29-65 (114)
201 2ehe_A Four and A half LIM dom 20.3 82 0.0028 20.8 3.1 38 29-77 16-55 (82)
202 2lce_A B-cell lymphoma 6 prote 20.3 1.1E+02 0.0038 19.1 3.7 42 25-77 14-57 (74)
203 2egq_A FHL1 protein; LIM domai 20.2 74 0.0025 20.7 2.8 38 28-76 15-57 (77)
204 2ku3_A Bromodomain-containing 20.1 1E+02 0.0035 20.6 3.5 49 25-74 13-66 (71)
205 3ask_A E3 ubiquitin-protein li 20.1 32 0.0011 28.7 1.0 44 30-73 176-224 (226)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=105.42 Aligned_cols=62 Identities=21% Similarity=0.460 Sum_probs=52.0
Q ss_pred CCCCCCCCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 20 NNSNSEAGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 20 ~~~~~~~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
.+.+..++++.|+||++.+.+|+++ +|||.||..||.+|++.+ ..||+||+.+..+++.++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---NRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC---SSCTTTCCCCCSSCSCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC---CcCCCcCcccCcccccccC
Confidence 3445566789999999999999987 999999999999999854 5999999999876665543
No 2
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=102.99 Aligned_cols=59 Identities=29% Similarity=0.765 Sum_probs=50.0
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
.+...++.+|+||++.+.+|++++|||.||..||.+|++.......||+||+.+..+++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34456789999999999999999999999999999999854456799999998875543
No 3
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.2e-15 Score=105.10 Aligned_cols=57 Identities=26% Similarity=0.617 Sum_probs=49.0
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
.....++.+|+||++.+.+++.++|||.||..||.+|++.+ ..||+||+.+..+.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---KRCALCRQEIPEDFLD 65 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS---SBCSSSCCBCCHHHHS
T ss_pred cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC---CcCcCcCchhCHhhcc
Confidence 34456778999999999999999999999999999999843 5999999999866553
No 4
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=2e-14 Score=103.16 Aligned_cols=66 Identities=24% Similarity=0.594 Sum_probs=55.3
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC---CCCCCCCCccccccccccccccCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH---SNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~---s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
+...++++|+||++.+.+|++++|||.||..||.+|++.. .....||+||+.+..+.+.+++...+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 4456788999999999999999999999999999999963 23679999999998877777765543
No 5
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=102.67 Aligned_cols=66 Identities=27% Similarity=0.619 Sum_probs=54.8
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhh---CCCCCCCCCccccccccccccccCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG---HSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~---~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
....++.+|+||++.+.+|+.++|||.||..|+..|++. ......||+||+.+..+.+.+++...+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 445677999999999999999999999999999999985 123579999999998777766665443
No 6
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=101.59 Aligned_cols=56 Identities=25% Similarity=0.609 Sum_probs=47.6
Q ss_pred CCCCCCCCCccccccccCCCCcEEcc-CCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 20 NNSNSEAGNFECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 20 ~~~~~~~~~~~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.+.+...+++.|+||++.+.+|++++ |||.||..||.+|++.+ +...||+||+.+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDV 63 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCC
Confidence 34455667899999999999999999 99999999999999864 2468999999654
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.51 E-value=5.6e-15 Score=103.16 Aligned_cols=58 Identities=34% Similarity=0.863 Sum_probs=50.6
Q ss_pred CCCCCccccccccCCCCc-------EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 24 SEAGNFECNICFDLAQDP-------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~p-------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
..+++.+|+||++.+.++ +.++|||.||..||.+|++.+ ..||+||+.+..+++.++|
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---CCCCCCCCccChhheeecc
Confidence 345678999999999887 889999999999999999964 4999999999988887765
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=103.21 Aligned_cols=53 Identities=32% Similarity=0.700 Sum_probs=46.6
Q ss_pred CCCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 21 NSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+.+.....++|+||++.+.+|++++|||.||..||.+|++. ...||+||+.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 60 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA---TPRCYICDQPTG 60 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence 34455678999999999999999999999999999999985 449999999886
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.51 E-value=7.4e-15 Score=104.60 Aligned_cols=66 Identities=24% Similarity=0.532 Sum_probs=55.1
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC----CCCCCCCCccccccccccccccCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH----SNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~----s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
+...++++|+||++.+.+|++++|||.||..||.+|++.. .....||+||+.+....+.+++...+
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3456789999999999999999999999999999999852 23579999999998877777766543
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.49 E-value=2.1e-14 Score=102.36 Aligned_cols=61 Identities=26% Similarity=0.569 Sum_probs=53.0
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCC
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG 87 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~ 87 (229)
..+++.|+||++.+.+|++++|||+||..||.+|++. +...||+||+.+..+.+.++....
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~~~l~~n~~l~ 65 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTPNYVLK 65 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSSCCCEECTTTH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH--CcCCCCCCcCCCChhhCccCHHHH
Confidence 4568999999999999999999999999999999984 256999999999877777776543
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=99.28 Aligned_cols=57 Identities=26% Similarity=0.672 Sum_probs=48.3
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
.+...+++.|+||++.+.+|+.++|||.||..||.+|++. ....||+||+.+..+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--SSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--SSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--CcCCCCCCCcCCChhhc
Confidence 3445678999999999999999999999999999999962 34689999999876543
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.1e-14 Score=101.30 Aligned_cols=59 Identities=31% Similarity=0.637 Sum_probs=49.8
Q ss_pred CCCCCCCccccccccCCCC----cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQD----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
.+...+..+|+||++.+.+ ++.++|||.||..||.+|++.+.....||+||+.+....+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 3445677899999999998 9999999999999999999975445799999998875443
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=4.8e-14 Score=100.44 Aligned_cols=60 Identities=25% Similarity=0.603 Sum_probs=48.2
Q ss_pred CCCCCCCCccccccccCCCCc---EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 21 NSNSEAGNFECNICFDLAQDP---IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~~~p---v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
+.+...++.+|+||++.+.++ ++++|+|.||..||.+|++.+ ..||+||+.+...++.++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---CSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---CcCcCcCCccCCcccCCC
Confidence 334456778999999999765 557999999999999999854 599999999886665443
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=104.23 Aligned_cols=64 Identities=23% Similarity=0.537 Sum_probs=51.9
Q ss_pred CCCCCCCCccccccccCCCCcEEcc-CCCccChhHHHHHHhhCCCCCCCCCccccc-cccccccccC
Q 027023 21 NSNSEAGNFECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATI-EEEKLVPLYG 85 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v-~~~~l~p~~~ 85 (229)
+.+...+++.|+||++.+.+|++++ |||.||..||.+|+... +...||+||+.+ ..+.+.++..
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~ 71 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDVSPDALIANKF 71 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC-TTCCCTTTCCSSCCTTSCEECHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc-CCCcCcCCCCcCCCccccCcCHH
Confidence 3445667899999999999999999 99999999999999853 246999999987 4445555544
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.3e-14 Score=95.37 Aligned_cols=50 Identities=32% Similarity=0.814 Sum_probs=43.7
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
.+...++++|+||++.+.+|++++|||.||..||.+|++.......||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34456789999999999999999999999999999999864456799998
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.46 E-value=9.3e-14 Score=104.31 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=54.7
Q ss_pred CCCCCccccccccCCCCcEEccCC-CccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCG-HLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~Cg-H~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
...+++.|+||++++++||+++|| |+||..||.+||.. ..+||+||+.+..+.++|+..+.+
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~ 80 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTMDQIRPNTELKE 80 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCTTTSEECHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---CCCCCCCCCCCChhhceEcHHHHH
Confidence 345789999999999999999999 99999999999995 349999999999888888876544
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=98.12 Aligned_cols=52 Identities=35% Similarity=0.815 Sum_probs=44.7
Q ss_pred CCCCCCccccccccCCCCc-------EEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 23 NSEAGNFECNICFDLAQDP-------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~p-------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
....++.+|+||++.+.++ +.++|||.||..||.+|++.+ ..||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---SSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---CCCCCCCCccCc
Confidence 3456778999999999877 889999999999999999964 499999998763
No 18
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=100.77 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG 87 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~ 87 (229)
...+++.|+||++.+++||+++|||+||..||.+|+..+ .+||+|++.+..+.++|+....
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~---~~cP~~~~~l~~~~l~pn~~L~ 70 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS---PTDPFNRQMLTESMLEPVPELK 70 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC---SBCTTTCCBCCGGGCEECHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC---CCCCCCcCCCChHhcchHHHHH
Confidence 345789999999999999999999999999999999953 4999999999988888876543
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.43 E-value=3.6e-14 Score=96.82 Aligned_cols=55 Identities=35% Similarity=0.855 Sum_probs=48.8
Q ss_pred CCccccccccCCCCc-------EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 27 GNFECNICFDLAQDP-------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
++.+|+||++.+.++ +.++|||.||..|+.+|++.+ ..||+||+.+..+++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---SBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---CCCCCCCccCCccceeeee
Confidence 467899999999876 789999999999999999964 4999999999988887775
No 20
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.41 E-value=2.6e-13 Score=102.24 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
....+++.|+||++.+++||+++|||+||..||.+||.. ..+||+|+..+..+.++|+....+
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~ 86 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---SPTDPFNRQTLTESMLEPVPELKE 86 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---CSBCSSSCCBCCTTSSEECHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---CCCCCCCCCCCChhhceECHHHHH
Confidence 344678999999999999999999999999999999984 459999999999888888866543
No 21
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=90.85 Aligned_cols=50 Identities=28% Similarity=0.859 Sum_probs=42.6
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
.+...++..|+||++.+.+|++++|||.||..||.+|++.......||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34456778999999999999999999999999999997743346799998
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=103.80 Aligned_cols=59 Identities=31% Similarity=0.754 Sum_probs=51.4
Q ss_pred CCCCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccC
Q 027023 25 EAGNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYG 85 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~ 85 (229)
..+++.|+||++.+.+|+. ++|||.||..||.+|++.. ...||+||+.+..++++++..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcCCHHHhHhhHH
Confidence 4567899999999999999 9999999999999999964 258999999998877776654
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=95.88 Aligned_cols=53 Identities=32% Similarity=0.832 Sum_probs=45.5
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
+...++.+|+||++.+.+ +.++|||.||..||.+|++ ....||+||+.+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD---RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC---CCSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH---CcCcCCCcCCcccCCC
Confidence 345567899999999999 9999999999999999999 3559999999887443
No 24
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=2.7e-13 Score=102.61 Aligned_cols=60 Identities=33% Similarity=0.760 Sum_probs=51.1
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
+.+.|+||++.+.+|+.++|||.||..||.+|+..+.....||+||+.+..+.+.++...
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l 79 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSS
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHH
Confidence 457899999999999999999999999999999965445689999999987766655443
No 25
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.5e-13 Score=93.96 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=43.7
Q ss_pred CCCCCCCCccccccccCCCCcE---EccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 21 NSNSEAGNFECNICFDLAQDPI---VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~~~pv---~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+......+.+|+||++.+.++. +++|+|.||..||.+|++.+. .||+||+.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~---~CP~Cr~~~~ 63 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK---VCPLCNMPVL 63 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS---BCTTTCCBCS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC---cCCCcCcccc
Confidence 3344566789999999997653 459999999999999999654 9999999876
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.1e-13 Score=95.71 Aligned_cols=51 Identities=29% Similarity=0.675 Sum_probs=43.6
Q ss_pred CCCCCccccccccCCCCc---EEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 24 SEAGNFECNICFDLAQDP---IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~p---v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
...++.+|+||++.+.++ +.++|+|.||..||.+|++.+ ..||+||+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---RTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---SSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---CcCcCcCCcCCC
Confidence 345678999999999876 678999999999999999964 499999998763
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=3.2e-13 Score=93.08 Aligned_cols=56 Identities=21% Similarity=0.584 Sum_probs=47.2
Q ss_pred CCcccccccc-CCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 27 GNFECNICFD-LAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 27 ~~~~C~ICld-~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
++..|+||++ .+.++ +.++|||.||..||.+|+.. ....||+||+.+..+++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccccceeec
Confidence 4678999999 78777 56899999999999999874 346899999999887776654
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=1e-12 Score=90.95 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=42.6
Q ss_pred CCCccccccccCCCCc-EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQDP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+.+.+|+||++.+.++ +.++|||.||..|+.+|++.+ ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS---CSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc---CcCcCCChhhH
Confidence 4567899999999986 779999999999999999854 49999999886
No 29
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=8.4e-13 Score=91.78 Aligned_cols=53 Identities=32% Similarity=0.770 Sum_probs=43.7
Q ss_pred CCCCCCCccccccccCCC---CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 22 SNSEAGNFECNICFDLAQ---DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~---~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
......+.+|+||++.+. .++.++|||.||..||.+|++.+. .||+||+.+..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK---KCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS---BCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC---CCcCcCccccC
Confidence 344556788999999884 457799999999999999999654 89999998873
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.34 E-value=4.3e-13 Score=99.84 Aligned_cols=58 Identities=28% Similarity=0.609 Sum_probs=49.7
Q ss_pred CCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 26 AGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
.+++.|+||++.+.+|+++ +|||.||..||.+|++. ...||+||+.+....+.+++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~n~~l 78 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY---KTQCPTCCVTVTEPDLKNNRIL 78 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEECHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC---CCCCCCCCCcCChhhCCcCHHH
Confidence 4568999999999999988 89999999999999994 3599999999987666665443
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=4.4e-13 Score=103.82 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=44.5
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.+++.|+||++.+.+|++++|||.||..||..|+.. ....||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA--QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH--CcCCCCCCCccCCC
Confidence 356789999999999999999999999999999983 34599999999875
No 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=9e-13 Score=97.86 Aligned_cols=64 Identities=20% Similarity=0.461 Sum_probs=53.6
Q ss_pred CCCCccccccccCCCCcEEcc-CCCccChhHHHHHHhhC---CCCCCCCC--cccc-ccccccccccCCCC
Q 027023 25 EAGNFECNICFDLAQDPIVTL-CGHLFCWPCLYKWLHGH---SNYRECPV--CKAT-IEEEKLVPLYGRGK 88 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~-CgH~FC~~CL~~wl~~~---s~~~~CPv--CR~~-v~~~~l~p~~~~~~ 88 (229)
...++.|+||++.+.+||+++ |||+||..||.+||..+ .....||+ |++. +...+++|+..+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~ 74 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRR 74 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHH
Confidence 356799999999999999996 99999999999999853 23569999 9877 87788888766544
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=5.5e-13 Score=105.39 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=43.3
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
+++.|+||++.+.+|++++|||.||..||..|+.. ...||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc---CCcCCCCCCcCCC
Confidence 45789999999999999999999999999999994 4589999998864
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=1.3e-12 Score=86.58 Aligned_cols=48 Identities=29% Similarity=0.687 Sum_probs=41.5
Q ss_pred CCCccccccccCCCC----cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQD----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
.++.+|+||++.+.+ ++.++|||.||..||.+|++.+ ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---CcCCCCCCcCC
Confidence 356789999999865 6789999999999999999965 59999998764
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=7.6e-13 Score=102.20 Aligned_cols=59 Identities=34% Similarity=0.817 Sum_probs=50.9
Q ss_pred CCCCccccccccCCCCc-------EEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 25 EAGNFECNICFDLAQDP-------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p-------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
..++++|+||++.+.++ +.++|||.||..||.+|++.+ ..||+||+.+..+.+.+++..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---SBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---CCCCCCCCcCccccccccccC
Confidence 34678999999999988 899999999999999999954 499999999998888776653
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.30 E-value=1.5e-12 Score=100.10 Aligned_cols=61 Identities=30% Similarity=0.675 Sum_probs=51.5
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
.....+++.|+||++.+.+|++++|||.||..||.+|++... ..||+||+.+..+.+.++.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~~~ 72 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFPDN 72 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEECH
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--CCCCCCCCCcCHHhcccCH
Confidence 345667899999999999999999999999999999998532 3899999999877665543
No 37
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.29 E-value=2.2e-12 Score=85.68 Aligned_cols=48 Identities=31% Similarity=0.770 Sum_probs=41.1
Q ss_pred CCCccccccccCCCC---cEEcc-CCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 26 AGNFECNICFDLAQD---PIVTL-CGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 26 ~~~~~C~ICld~~~~---pv~l~-CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+++.+|+||++.+.+ ++.++ |||.||..||.+|++. ...||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---CCcCcCCCCEeE
Confidence 456789999999987 67776 9999999999999985 459999998764
No 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=2.2e-12 Score=111.31 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=54.2
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGK 88 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~ 88 (229)
.....+.|+||++.+.+||+++|||+||..||.+|+.... ..||+||.++....++|+.....
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--~~cP~~~~~~~~~~l~~n~~l~~ 266 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFNPVTRSPLTQEQLIPNLAMKE 266 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--SSCTTTCCCCCGGGCEECHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--CCCcCCCCCCchhcCcccHHHHH
Confidence 3457899999999999999999999999999999998632 35999999999888888766543
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=1.3e-12 Score=98.77 Aligned_cols=51 Identities=24% Similarity=0.653 Sum_probs=45.3
Q ss_pred CCCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
..+++.|+||++.+.+|+.+ +|||.||..||.+|++.+ ..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---KYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC---SBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC---CcCcCCCcccccc
Confidence 34678999999999999997 999999999999999953 5999999988754
No 40
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=94.99 Aligned_cols=49 Identities=29% Similarity=0.683 Sum_probs=42.5
Q ss_pred CCCCccccccccCCCC---cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..++..|+||++.+.+ ++.++|||.||..||.+|++.+ ..||+||+.+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS---GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT---CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC---CcCcCcCccCC
Confidence 4567889999999876 6779999999999999999854 49999999775
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=103.99 Aligned_cols=55 Identities=27% Similarity=0.689 Sum_probs=46.8
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccc-ccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE-KLVPL 83 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~-~l~p~ 83 (229)
+++.|+||++.+.+|++++|||.||..||.+|+.. ....||+||..+... .+.++
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~l~~n 132 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQNYIMIPN 132 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCBC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh--CCCcCCCCCccCCCCCCCCCC
Confidence 45789999999999999999999999999999984 345899999998865 44444
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=9.2e-13 Score=100.62 Aligned_cols=52 Identities=23% Similarity=0.741 Sum_probs=45.6
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
...+++.|+||++.+.+|++++|||.||..||.+|++. ....||+||+.+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--TTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--CcCCCCCCCcccCc
Confidence 34567999999999999999999999999999999974 24699999998863
No 43
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.26 E-value=9.1e-13 Score=104.96 Aligned_cols=51 Identities=24% Similarity=0.598 Sum_probs=44.8
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..++++.|+||++.+.+|++++|||.||..||.+|++. ....||+||..+.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS--GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG--SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc--CCCCCCCCCCccc
Confidence 45678999999999999999999999999999999984 2358999999764
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.22 E-value=5.6e-12 Score=96.37 Aligned_cols=54 Identities=31% Similarity=0.689 Sum_probs=47.3
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
.+++.|+||++.+.+|+.++|||.||..||.+|++.. ...||+||+.+....+.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVM--GSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC--cCcCCCCCCCCCHhhcc
Confidence 4568999999999999999999999999999999962 35899999998866654
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.22 E-value=4.2e-12 Score=102.87 Aligned_cols=48 Identities=31% Similarity=0.841 Sum_probs=42.8
Q ss_pred CCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+++.|+||++.+.+|+.+ +|||.||..||..|++. ....||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS--GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCC
Confidence 456899999999999987 99999999999999994 2468999999885
No 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.21 E-value=1.7e-11 Score=93.20 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=41.4
Q ss_pred CCccccccccCCCCcE------------------EccCCCccChhHHHHHHhhC--CCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDPI------------------VTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv------------------~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v~~ 77 (229)
.+.+|+||++.+.++. .++|+|.||..||.+|+... .....||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999987654 68999999999999999632 135699999998764
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=2.4e-11 Score=87.51 Aligned_cols=54 Identities=22% Similarity=0.538 Sum_probs=43.4
Q ss_pred CCCCccccccccCCC--CcEEcc--CCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 25 EAGNFECNICFDLAQ--DPIVTL--CGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 25 ~~~~~~C~ICld~~~--~pv~l~--CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
..++.+|+||++.+. ++++++ |||.||..|+..+++. ....||.||+.+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccCCCch
Confidence 456789999999884 455555 9999999999999864 35699999999886544
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=4.3e-12 Score=97.92 Aligned_cols=57 Identities=35% Similarity=0.878 Sum_probs=50.8
Q ss_pred CCCCccccccccCCCCc-------EEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 25 EAGNFECNICFDLAQDP-------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p-------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
.++..+|+||++.+.++ +.++|||.||..||.+|++.+ ..||+||+.+..+++.++|
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---CCCCCCCCcCChhcceeee
Confidence 45678899999999876 889999999999999999964 4999999999999988876
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=2.6e-12 Score=98.61 Aligned_cols=55 Identities=24% Similarity=0.586 Sum_probs=47.6
Q ss_pred CCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccC
Q 027023 26 AGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYG 85 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~ 85 (229)
.+++.|+||++.+.+|+++ +|||.||..||..|+. ..||+||..+....+.+++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~~~~~n~~ 75 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKINRQ 75 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCSSCCCCHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccccccccHH
Confidence 4678999999999999999 9999999999999987 38999999987666655543
No 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=89.48 Aligned_cols=50 Identities=26% Similarity=0.594 Sum_probs=40.9
Q ss_pred CCccccccccCCCC--------------cEEc-cCCCccChhHHHHHHhhCCCCCCCCCccccccccc
Q 027023 27 GNFECNICFDLAQD--------------PIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEK 79 (229)
Q Consensus 27 ~~~~C~ICld~~~~--------------pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~ 79 (229)
++..|+||++.+.+ .+++ +|+|.||..||.+|++.+ .+||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---CCCCCcCCCcchhh
Confidence 56679999998866 4454 599999999999999954 49999999887554
No 51
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.19 E-value=1.1e-11 Score=102.65 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG 87 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~ 87 (229)
...+.+.||||++.+.+||+++|||+||..||..|+.... ..||+|+.++....++|+....
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~~L~pN~~Lk 163 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQDQLIPNLAMK 163 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChhhCcchHHHH
Confidence 3467899999999999999999999999999999998642 2799999999988898886644
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=2.9e-12 Score=86.19 Aligned_cols=46 Identities=30% Similarity=0.587 Sum_probs=40.3
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+.+++.|+||++.+.+|++++|||.||..|+.+| ...||+||+.+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEee
Confidence 4567899999999999999999999999998762 348999999876
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=1.6e-11 Score=84.84 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=45.5
Q ss_pred CCCccccccccCCCCcEEc--cCCCc-cChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 26 AGNFECNICFDLAQDPIVT--LCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l--~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
+++.+|.||++...+++.+ +|||. +|..|+.+|++.+ ..||+||+.+. .++++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---KPCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---CCCTTTCCCCC--EEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---CcCCCcCcchh--ceEeee
Confidence 4567899999999999987 99999 8999999999843 48999999986 455544
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=2.4e-11 Score=98.74 Aligned_cols=59 Identities=31% Similarity=0.678 Sum_probs=50.8
Q ss_pred CCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccc
Q 027023 23 NSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPL 83 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~ 83 (229)
+...+++.|+||++.+.+|++++|||+||..||.+|++.. ...||+||..+..+++.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC--CCCCCCCccCcchhhhhhh
Confidence 4566789999999999999999999999999999999853 2489999999987766554
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.13 E-value=1.9e-11 Score=84.28 Aligned_cols=55 Identities=24% Similarity=0.609 Sum_probs=45.8
Q ss_pred CCCCccccccccCCCCcEEc--cCCCc-cChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVT--LCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l--~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
.+.+.+|.||++...+++++ +|||. +|+.|+.+|++.+ ..||+||+++. .++.+|
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---ASCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---CBCTTTCCBCC--EEEEEE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---CcCCCcCchhh--ceEEEe
Confidence 44567899999999999887 99998 9999999998743 58999999986 455444
No 56
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=9.7e-11 Score=81.98 Aligned_cols=54 Identities=22% Similarity=0.622 Sum_probs=44.0
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 22 SNSEAGNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
+...+++.+|.||++...+++.++|||. ||..|+.. ...||+||+.+. ..+.++
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~--~~~~i~ 63 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQ--ESFALS 63 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCC--CEECCC
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchh--ceEEee
Confidence 3445567899999999999999999999 99999973 248999999887 344444
No 57
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.08 E-value=6.1e-11 Score=81.45 Aligned_cols=56 Identities=14% Similarity=0.334 Sum_probs=50.2
Q ss_pred CccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCC
Q 027023 28 NFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGR 86 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~ 86 (229)
.+.|+||++.+++||++ +|||+|+..||.+|++.+. +||++++++..++++|+...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~---~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG---NDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS---BCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC---CCcCCcCCCChhhcEECccC
Confidence 47899999999999999 9999999999999999654 79999999999999988653
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=2.8e-11 Score=85.80 Aligned_cols=45 Identities=31% Similarity=0.677 Sum_probs=40.3
Q ss_pred CCCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.++..|+||++.+.+++.++|||. ||..|+.+| ..||+||+.+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence 356789999999999999999999 999999877 379999999873
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.7e-12 Score=88.30 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=38.5
Q ss_pred CCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
++.+|+||++.+.+++.++|||. ||..|+.. ...||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------CCCCccCCceecC
Confidence 45789999999999999999999 99999953 2489999998873
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.04 E-value=1.2e-10 Score=106.68 Aligned_cols=53 Identities=30% Similarity=0.762 Sum_probs=45.8
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~ 81 (229)
...+|+||++.+.+++.++|||.||..|+.+|++. ....||+||+.+....++
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH--TCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc--CCCCCCCCCCccCCceeE
Confidence 34799999999999999999999999999999984 245899999999865544
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.03 E-value=1.9e-10 Score=87.42 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=40.0
Q ss_pred CCccccccccCCCCc------------------EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDP------------------IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~p------------------v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
++..|+||++.+.++ +.++|+|.||..||.+|++.+ .+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---CcCcCCCCcce
Confidence 567899999998765 347999999999999999954 49999999865
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.6e-10 Score=99.21 Aligned_cols=61 Identities=21% Similarity=0.459 Sum_probs=52.4
Q ss_pred CCCCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCC--ccccccccccccccCC
Q 027023 25 EAGNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPV--CKATIEEEKLVPLYGR 86 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPv--CR~~v~~~~l~p~~~~ 86 (229)
...++.||||++.+++||++ .|||.||..||.+||+.+ +...||+ |++.+..++++++..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~-~~~~CPvtGCr~~l~~~dL~pN~~L 241 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY-TTRDCPQAACSQVVSMRDFVRDPIM 241 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC-SCEECSGGGCSCEECGGGEEECHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC-CCCCCCcccccCcCchhhCCcCHHH
Confidence 34678899999999999985 999999999999999853 3568999 9999998888887554
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=78.26 Aligned_cols=52 Identities=27% Similarity=0.657 Sum_probs=42.4
Q ss_pred CCCCccccccccCCC--CcEEccCC-----CccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQ--DPIVTLCG-----HLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~--~pv~l~Cg-----H~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
..++..|.||++.+. ++++++|. |.||..||.+|++.+ +...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS-DTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH-CCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC-CCCCCCCCCCeeec
Confidence 345678999998774 57889996 999999999999964 24699999998763
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.83 E-value=8.9e-10 Score=79.19 Aligned_cols=49 Identities=27% Similarity=0.761 Sum_probs=41.3
Q ss_pred CCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCcccccccccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLY 84 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~ 84 (229)
++..|+||++...+++.++|||. ||..|+..| ..||+||+.+.. .+.+|
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~--~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH--VQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE--EEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC--eEEEE
Confidence 45789999999999999999999 999999755 279999999883 44444
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.83 E-value=4.7e-10 Score=86.75 Aligned_cols=48 Identities=27% Similarity=0.597 Sum_probs=0.9
Q ss_pred CCccccccccCCCCcE------------------EccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDPI------------------VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv------------------~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
++..|+||++.+.++. .++|+|.||..||.+|++.+ ..||+||+.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEF 112 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---CcCCCCCCeeee
Confidence 4568999999987642 25899999999999999954 499999998653
No 66
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.2e-08 Score=72.77 Aligned_cols=57 Identities=23% Similarity=0.503 Sum_probs=44.8
Q ss_pred CCCCCCCCCCccccccccCCCCcEE-ccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 19 NNNSNSEAGNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 19 ~~~~~~~~~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
++...-.+...+|.||.+.+..... ..|+|.||..||.+|++.+. ..+||+||+...
T Consensus 6 ~~~~~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 6 SGRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWP 63 (74)
T ss_dssp CCCCCCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-SCCCTTTCSCCC
T ss_pred cchhhccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-CCCCCCCcCcCC
Confidence 3344455677889999999976544 48999999999999998652 369999998765
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=2.1e-09 Score=79.16 Aligned_cols=55 Identities=24% Similarity=0.616 Sum_probs=43.2
Q ss_pred CCCccccccccCCCCcEEc---cCCCccChhHHHHHHhhC---C--CCCCCCC--cccc--cccccc
Q 027023 26 AGNFECNICFDLAQDPIVT---LCGHLFCWPCLYKWLHGH---S--NYRECPV--CKAT--IEEEKL 80 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l---~CgH~FC~~CL~~wl~~~---s--~~~~CPv--CR~~--v~~~~l 80 (229)
.+.++|+||++.+.+++.+ +|||.||..|+.+|++.+ . ....||. |+.. +..+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 3578899999999877543 799999999999998842 1 2469999 9998 665443
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.67 E-value=4.8e-09 Score=94.85 Aligned_cols=45 Identities=31% Similarity=0.851 Sum_probs=40.3
Q ss_pred CCCccccccccCCCCcEEccCCCc-cChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHL-FCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~-FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.++..|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence 356889999999999999999999 999999876 379999999873
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.35 E-value=1.5e-07 Score=84.81 Aligned_cols=56 Identities=29% Similarity=0.736 Sum_probs=42.6
Q ss_pred CCCCCCCccccccccCCCC----cE----EccCCCccChhHHHHHHhhCCC--------CCCCCCccccccc
Q 027023 22 SNSEAGNFECNICFDLAQD----PI----VTLCGHLFCWPCLYKWLHGHSN--------YRECPVCKATIEE 77 (229)
Q Consensus 22 ~~~~~~~~~C~ICld~~~~----pv----~l~CgH~FC~~CL~~wl~~~s~--------~~~CPvCR~~v~~ 77 (229)
++.++...+|+||++.+.+ |. ...|+|.||..||.+|++.... ...||.||++++.
T Consensus 302 ~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 302 DEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3455678999999988876 21 1479999999999999985211 1479999998863
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.30 E-value=4.4e-07 Score=61.81 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=40.9
Q ss_pred CCCCccccccccCCCCcEEccCC--C---ccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCG--H---LFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~Cg--H---~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+++...|.||++...++.++||. + .+|..||.+|+..+ +...||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS-RNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC-CCCccCCCCCeee
Confidence 34567899999887777778865 4 89999999999853 3569999998765
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=9.9e-06 Score=60.47 Aligned_cols=46 Identities=22% Similarity=0.540 Sum_probs=37.2
Q ss_pred cccccccCCCC-cEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 30 ECNICFDLAQD-PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 30 ~C~ICld~~~~-pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
-|++|--.+.. ...+||+|.||.+|+..|.+. ....||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~--~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT--TCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc--cCCCCcCcCCeeee
Confidence 47888776654 467899999999999999874 34599999999873
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.06 E-value=0.00065 Score=58.15 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=40.3
Q ss_pred CCccccccccCCCCcEEc-cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDPIVT-LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l-~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...+|.||.+.....+.- .|+|.||..|+..|++.+ ....||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~-~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC-SSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC-CCCCCCCCCCCCC
Confidence 467899999998876553 499999999999999854 3569999998765
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.46 E-value=0.0021 Score=64.69 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=54.9
Q ss_pred CCCCCccccccccCCCCcEEccCC-CccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCCC
Q 027023 24 SEAGNFECNICFDLAQDPIVTLCG-HLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS 89 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l~Cg-H~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~~ 89 (229)
...+++.|||-.+.++|||+++.| ++|-..+|.+|+..+ .+||.-|+++..+.++|+......
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~---~tdP~Tr~~L~~~~liPN~~Lk~~ 950 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD---STDPFNRMPLKLEDVTPNEELRQK 950 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---CBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC---CCCCCCCCCCCcccccccHHHHHH
Confidence 345789999999999999999998 589999999999954 499999999999999998776543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.30 E-value=0.0017 Score=47.52 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=28.3
Q ss_pred CCccccccccC-CCCcEE--ccCCCccChhHHHHHHh
Q 027023 27 GNFECNICFDL-AQDPIV--TLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 27 ~~~~C~ICld~-~~~pv~--l~CgH~FC~~CL~~wl~ 60 (229)
++..|+||.+. ..+++. +.|+|.||..|+..+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46889999976 677877 89999999999987443
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.17 E-value=0.0068 Score=43.37 Aligned_cols=46 Identities=28% Similarity=0.760 Sum_probs=35.0
Q ss_pred CCCCccccccccCCCCcEEccC----CCccChhHHHHHHhhC--CCCCCCCC
Q 027023 25 EAGNFECNICFDLAQDPIVTLC----GHLFCWPCLYKWLHGH--SNYRECPV 70 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~C----gH~FC~~CL~~wl~~~--s~~~~CPv 70 (229)
....+.|.+|.+.+.+.....| .|.||.+|-..+++.+ .....||.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4567899999999998865555 7999999999998853 23445554
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.68 E-value=0.27 Score=36.06 Aligned_cols=48 Identities=27% Similarity=0.611 Sum_probs=35.9
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
+-+.|..|.-..+ ..+.-..|-.|..||...+.. +..||+|+.++..+
T Consensus 27 G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~---SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV---SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS---SSEETTTTEECCCC
T ss_pred CcccChhhccccC-CeeeecchhhHHHHHHHHHhh---ccCCcccCCcCCcc
Confidence 4567999986555 333344699999999988884 45999999988743
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.26 E-value=3 Score=30.14 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=36.9
Q ss_pred CCccccccccCCCC---c-EE---ccCCCccChhHHHHHHhhCCCCCCCCCcccccccccccc
Q 027023 27 GNFECNICFDLAQD---P-IV---TLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVP 82 (229)
Q Consensus 27 ~~~~C~ICld~~~~---p-v~---l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p 82 (229)
....|.||-|..-. . +. -.|+-..|.+|+.-=.+. ..+.||.|+......+-.|
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke--G~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE--GTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT--SCSSCTTTCCCCCCCTTCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc--cCccccccCCccccccCCC
Confidence 44689999987631 1 22 258888999998633332 5679999999887544444
No 78
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.27 E-value=0.52 Score=32.06 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=33.6
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC-CCCCCCCCcccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH-SNYRECPVCKAT 74 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~~ 74 (229)
......|.||.+.-.--.--.|...||..|+...+..- .+...|+.|++.
T Consensus 9 ~~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 33456799998643211113688999999997666632 245799999764
No 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.59 E-value=0.58 Score=42.32 Aligned_cols=54 Identities=31% Similarity=0.622 Sum_probs=40.3
Q ss_pred CCccccccccCCCCcEE-ccCCCccChhHHHHHHh--hCCCCCCCCCccccccccccc
Q 027023 27 GNFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLH--GHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~--~~s~~~~CPvCR~~v~~~~l~ 81 (229)
-.+.|||-...+..|+. ..|.|.-|.+-. .|++ .+.....||+|.+.+..++|.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHee
Confidence 34789999999999987 689999777642 3333 223578999999988766654
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.76 E-value=0.27 Score=36.04 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCCCCccccccccCCCCcEEc---cCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 24 SEAGNFECNICFDLAQDPIVT---LCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l---~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
..++...| ||...-.+...+ .|.-+|+..|+..-...-.....||.|+.
T Consensus 24 ~~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 24 YGTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34455778 897665444333 58889999998643332224579999974
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.70 E-value=0.89 Score=32.98 Aligned_cols=46 Identities=20% Similarity=0.506 Sum_probs=29.7
Q ss_pred CCCccccccccCCCCcEEc---c--CC-CccChhHHHHHHhh-CCCCCCCCCccccc
Q 027023 26 AGNFECNICFDLAQDPIVT---L--CG-HLFCWPCLYKWLHG-HSNYRECPVCKATI 75 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l---~--Cg-H~FC~~CL~~wl~~-~s~~~~CPvCR~~v 75 (229)
.+..-| ||.+..... .+ . |. .+||..|+. +.. ......||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 355667 998854432 33 3 55 689999986 332 23568999997643
No 82
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.52 E-value=0.87 Score=41.01 Aligned_cols=53 Identities=25% Similarity=0.473 Sum_probs=39.7
Q ss_pred CccccccccCCCCcEE-ccCCCccChhHHHHHHh--hCCCCCCCCCccccccccccc
Q 027023 28 NFECNICFDLAQDPIV-TLCGHLFCWPCLYKWLH--GHSNYRECPVCKATIEEEKLV 81 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~-l~CgH~FC~~CL~~wl~--~~s~~~~CPvCR~~v~~~~l~ 81 (229)
.+.|||-...++.|+. ..|.|.-|.+-. .|++ .+.....||+|.+.+..+.|.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 4689999999999976 689999776643 3333 223578999999988766654
No 83
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=85.18 E-value=0.92 Score=31.20 Aligned_cols=49 Identities=18% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCCccccccccCCCCcEEc--c--CC-CccChhHHHHHHhh-CCCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDPIVT--L--CG-HLFCWPCLYKWLHG-HSNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l--~--Cg-H~FC~~CL~~wl~~-~s~~~~CPvCR~~v~ 76 (229)
..+..-| ||.+......+. . |. .+||..|+. +.. ......||.|+..-.
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 4456778 898864433332 3 65 689999996 332 225689999976443
No 84
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.74 E-value=0.36 Score=33.41 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=32.0
Q ss_pred CCCCCCccccccccCCCCc-EE--ccCCCccChhHHHHH------HhhCCCCCCCCCcccc
Q 027023 23 NSEAGNFECNICFDLAQDP-IV--TLCGHLFCWPCLYKW------LHGHSNYRECPVCKAT 74 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~p-v~--l~CgH~FC~~CL~~w------l~~~s~~~~CPvCR~~ 74 (229)
..+.....| ||.....+. .+ -.|..+||..|+.-- +........||.|+..
T Consensus 11 ~~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 11 VYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp SCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred ccCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 344456778 898776532 22 368899999998421 1111246799999753
No 85
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=83.62 E-value=2.4 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
......|..|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 63 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPECF-----------VCADCNLNLKQ 63 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTTTC-----------CCSSSCCCTTT
T ss_pred CCcCCCcccCCCEecccEEEECCceECccCC-----------EecCCCCCCCC
Confidence 3456789999998887666677788888775 68899887764
No 86
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.39 E-value=1.5 Score=29.88 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
....|..|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY-----------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT-----------SCSSSCCCHHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC-----------eeCCCCCCCCC
Confidence 45679999998887777777888888875 68889887753
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.06 E-value=0.31 Score=33.59 Aligned_cols=53 Identities=19% Similarity=0.475 Sum_probs=35.2
Q ss_pred CCCCccccccccCCCCc-EE--ccCCCccChhHHHHHHhhC-CCCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQDP-IV--TLCGHLFCWPCLYKWLHGH-SNYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p-v~--l~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~~v~~ 77 (229)
..+...|.||...-... .+ -.|..+||..|+..-.... .....||.|+..+.+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 44567799998765432 22 2688899999986433321 146789999876653
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.39 E-value=2.9 Score=28.97 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=32.6
Q ss_pred CCCCCCccccccccCCC--CcEE--ccCCCccChhHHHHHHh--hCCCCCCCCCccccc
Q 027023 23 NSEAGNFECNICFDLAQ--DPIV--TLCGHLFCWPCLYKWLH--GHSNYRECPVCKATI 75 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~--~pv~--l~CgH~FC~~CL~~wl~--~~s~~~~CPvCR~~v 75 (229)
+.+.+...| ||..... ...+ -.|..+||..|+.--.. .......||.|+..-
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566778 8987663 2222 36889999999852111 112467999997643
No 89
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.66 E-value=0.48 Score=31.65 Aligned_cols=35 Identities=31% Similarity=0.721 Sum_probs=23.9
Q ss_pred CccccccccCCCCc-----EEc-c--CCCccChhHHHHHHhhC
Q 027023 28 NFECNICFDLAQDP-----IVT-L--CGHLFCWPCLYKWLHGH 62 (229)
Q Consensus 28 ~~~C~ICld~~~~p-----v~l-~--CgH~FC~~CL~~wl~~~ 62 (229)
...||-|...+... ++- . |++.||+.|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 35688888766532 222 3 88999999988877643
No 90
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=76.58 E-value=5.4 Score=28.55 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=31.9
Q ss_pred CCCCCCccccccccCCCCcEEc---cCCCccChhHHHHH--HhhC-----------CCCCCCCCcc
Q 027023 23 NSEAGNFECNICFDLAQDPIVT---LCGHLFCWPCLYKW--LHGH-----------SNYRECPVCK 72 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv~l---~CgH~FC~~CL~~w--l~~~-----------s~~~~CPvCR 72 (229)
+....+..|.||-..-. .... -|+-.||..||.+. ++.+ .....|+.|.
T Consensus 10 e~~~~D~~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCCCSCCCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred cCCCCCcccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 34457788999974332 2233 48899999999985 2211 1246899993
No 91
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=76.20 E-value=1 Score=43.71 Aligned_cols=53 Identities=25% Similarity=0.542 Sum_probs=40.5
Q ss_pred CCCCCCccccccccCCCCcE----------EccCCCcc--------------------ChhHHHHHHhh-----CCCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPI----------VTLCGHLF--------------------CWPCLYKWLHG-----HSNYRE 67 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv----------~l~CgH~F--------------------C~~CL~~wl~~-----~s~~~~ 67 (229)
....+...|+-|+..+.||. -|.||-.| |..|..+|-.. |.+...
T Consensus 12 ~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~a 91 (657)
T 3ttc_A 12 QIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVA 91 (657)
T ss_dssp CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCc
Confidence 45567788999998887762 36777766 99999998763 446789
Q ss_pred CCCccccc
Q 027023 68 CPVCKATI 75 (229)
Q Consensus 68 CPvCR~~v 75 (229)
||.|.=.+
T Consensus 92 Cp~CGP~l 99 (657)
T 3ttc_A 92 CPECGPYL 99 (657)
T ss_dssp CTTTSCCE
T ss_pred CcccCccc
Confidence 99996655
No 92
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=75.48 E-value=0.47 Score=32.43 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCCCCCCCccccccccCCCCcEE---ccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 20 NNSNSEAGNFECNICFDLAQDPIV---TLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 20 ~~~~~~~~~~~C~ICld~~~~pv~---l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
.+.+...+...| ||.....+... -.|..+|+..|+.--...-.....||.|+.
T Consensus 11 ~~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 11 RENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp ---CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred cccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344455667888 99876654322 258889999998532211124578888864
No 93
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=74.69 E-value=1.5 Score=43.22 Aligned_cols=54 Identities=28% Similarity=0.540 Sum_probs=40.9
Q ss_pred CCCCCCccccccccCCCCcE----------EccCCCcc--------------------ChhHHHHHHhh-----CCCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPI----------VTLCGHLF--------------------CWPCLYKWLHG-----HSNYRE 67 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv----------~l~CgH~F--------------------C~~CL~~wl~~-----~s~~~~ 67 (229)
....+...|+-|+..+.||. .|.||-.| |..|..+|-.. |.+...
T Consensus 101 ~i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~a 180 (772)
T 4g9i_A 101 IIPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTA 180 (772)
T ss_dssp CCCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCC
Confidence 34567788999998887762 36788776 99999999763 446789
Q ss_pred CCCcccccc
Q 027023 68 CPVCKATIE 76 (229)
Q Consensus 68 CPvCR~~v~ 76 (229)
||.|.=.+.
T Consensus 181 C~~CGP~l~ 189 (772)
T 4g9i_A 181 CPVCGPSYR 189 (772)
T ss_dssp CTTTSCCEE
T ss_pred CccCCceEE
Confidence 999976543
No 94
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=74.57 E-value=1.6 Score=28.86 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=32.7
Q ss_pred CCCCCccccccccCCCCcEE--ccCCCccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 24 SEAGNFECNICFDLAQDPIV--TLCGHLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~--l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
....+..|.||.+. ..++ -.|...||..|+..-+.. -.+...||.|++
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34566789999874 2222 267889999999764432 235679999965
No 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=74.37 E-value=1.6 Score=43.09 Aligned_cols=53 Identities=25% Similarity=0.498 Sum_probs=39.5
Q ss_pred CCCCCCccccccccCCCCcE----------EccCCCcc--------------------ChhHHHHHHhh-----CCCCCC
Q 027023 23 NSEAGNFECNICFDLAQDPI----------VTLCGHLF--------------------CWPCLYKWLHG-----HSNYRE 67 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~pv----------~l~CgH~F--------------------C~~CL~~wl~~-----~s~~~~ 67 (229)
....+...|+-|+..+.||. .|.||-.| |..|..+|-.. |.+...
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 44566788999998887762 36777655 99999998763 346789
Q ss_pred CCCccccc
Q 027023 68 CPVCKATI 75 (229)
Q Consensus 68 CPvCR~~v 75 (229)
||.|.=.+
T Consensus 186 C~~CGP~l 193 (761)
T 3vth_A 186 CFDCGPSL 193 (761)
T ss_dssp CTTTSCCE
T ss_pred CCccCCee
Confidence 99996544
No 96
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.61 E-value=0.26 Score=35.40 Aligned_cols=51 Identities=16% Similarity=0.399 Sum_probs=34.9
Q ss_pred CCCCccccccccCCC---CcEEc--cCCCccChhHHHHHHh-----hCCCCCCCCCccccc
Q 027023 25 EAGNFECNICFDLAQ---DPIVT--LCGHLFCWPCLYKWLH-----GHSNYRECPVCKATI 75 (229)
Q Consensus 25 ~~~~~~C~ICld~~~---~pv~l--~CgH~FC~~CL~~wl~-----~~s~~~~CPvCR~~v 75 (229)
.+.+..|.||.+.-. +.+++ .|...||..|+..-+. ...+...|+.|+...
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 445678999997643 34443 6888999999975443 223567899997644
No 97
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.18 E-value=1.8 Score=30.03 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCCccccccccCCCCcE-E--c--cCCCccChhHHHHHHhh------CCCCCCCCCcccc
Q 027023 25 EAGNFECNICFDLAQDPI-V--T--LCGHLFCWPCLYKWLHG------HSNYRECPVCKAT 74 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv-~--l--~CgH~FC~~CL~~wl~~------~s~~~~CPvCR~~ 74 (229)
..+...| ||.....+.. + - .|..+||..|+.---.. ......||.|+..
T Consensus 13 ~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 13 PEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3466788 8998743332 2 2 68889999998521111 1246789999753
No 98
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.62 E-value=5.1 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=32.4
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.....|..|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 23 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPFLVALGKSWHPEEF-----------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCCSCEEEETTEEECTTTC-----------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEecceEEEECCccccccCC-----------ccCCCCCCCCC
Confidence 345679999998887777777888888775 69999887764
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.44 E-value=1.6 Score=31.25 Aligned_cols=55 Identities=15% Similarity=0.272 Sum_probs=35.5
Q ss_pred CCCCCCCCccccccccCC--CCcEEc---cCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 21 NSNSEAGNFECNICFDLA--QDPIVT---LCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 21 ~~~~~~~~~~C~ICld~~--~~pv~l---~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+....+++..|.||.+.- .+...+ .|.-.|+..|+..-... .+...||.|.....
T Consensus 18 ~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP-~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 18 SQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP-EGQWLCRHCLQSRA 77 (88)
T ss_dssp TTCCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCC-SSCCCCHHHHHHTT
T ss_pred CCCcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccC-CCceECccccCccc
Confidence 334455678899999764 222222 57788999998643322 25678999976544
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.54 E-value=4.7 Score=31.48 Aligned_cols=49 Identities=20% Similarity=0.520 Sum_probs=34.0
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHh--------hCCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLH--------GHSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~--------~~s~~~~CPvCR~ 73 (229)
+..+..|.+|.+-=.--.--.|-..||..||..-+. .......||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 445677999986443222236888999999996653 2346789999975
No 101
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=68.71 E-value=1.9 Score=28.49 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=31.8
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhh-CCCCCCCCCccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG-HSNYRECPVCKATI 75 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~~v 75 (229)
+..+..|.||.+.-.--.--.|...||..|+..-+.. -.....||.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4456779999863211111258888999998754432 12467899997643
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.48 E-value=5.5 Score=28.55 Aligned_cols=55 Identities=15% Similarity=0.374 Sum_probs=35.3
Q ss_pred CCCCCCCCCCccccccccCCCCcEEccCCCccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 19 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 19 ~~~~~~~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
......+..+..|.||.+.-.--.--.|.-.|+..|+..-+.. -.+...||.|+.
T Consensus 16 ~~~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred ccccccCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3344445667789999975321111357778999999765542 224678999975
No 103
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.06 E-value=4.9 Score=28.11 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChhHHH
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWPCLY 56 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~ 56 (229)
+.+...|.+|...+.-- .-..||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 44557899999887532 125799999999953
No 104
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.85 E-value=4.9 Score=27.38 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=24.2
Q ss_pred CCCCccccccccCCCCcEEccC-CCccChhHHHHH
Q 027023 25 EAGNFECNICFDLAQDPIVTLC-GHLFCWPCLYKW 58 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~C-gH~FC~~CL~~w 58 (229)
.++..-|.||.+.+. -.-..| +-+||..|..+.
T Consensus 5 ~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCe-EEecCCCCceehHHHHHHH
Confidence 345567999999854 334678 789999997653
No 105
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.71 E-value=1 Score=29.29 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC-CCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH-SNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~ 73 (229)
+..+..|.||.+.-.--.--.|...||..|+..-+... .....||.|+.
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 33456799998752111113688889999987544321 23567888753
No 106
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.41 E-value=5 Score=29.73 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=35.8
Q ss_pred ccccccccCCCC---cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccccc
Q 027023 29 FECNICFDLAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKL 80 (229)
Q Consensus 29 ~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l 80 (229)
+.|..|...+.+ .....=|..||..|..+.+..+ ..|-.|...|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~---~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---GAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC---CSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC---CccccCCCCcCchhe
Confidence 678999888863 3345667889999988766532 279999998875443
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.16 E-value=3.9 Score=29.12 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCccccccccCCCCc----EEccCCCccChhHHHH
Q 027023 26 AGNFECNICFDLAQDP----IVTLCGHLFCWPCLYK 57 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~ 57 (229)
.+...|.+|...+.-- .-..||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456799999877532 1257999999999753
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.68 E-value=4 Score=28.63 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChhHHHH
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWPCLYK 57 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~ 57 (229)
+.+...|.+|...+.-- .--.||++||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 44567899999887532 2257999999999753
No 109
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.46 E-value=1.1 Score=29.74 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCccccccccCCCCc--EE--ccCCCccChhHHHHHHhh--CCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDP--IV--TLCGHLFCWPCLYKWLHG--HSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p--v~--l~CgH~FC~~CL~~wl~~--~s~~~~CPvCR~ 73 (229)
+++...|+||.....+. .+ -.|..+||..|+.--... ......||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 34567799999876422 22 368889999998532211 124678999965
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=60.88 E-value=4.4 Score=28.27 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=23.4
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChhHHH
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWPCLY 56 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~ 56 (229)
+.+...|.+|...+.-- .--.||.+||..|..
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 34556799999887532 125799999999975
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.71 E-value=8.2 Score=29.59 Aligned_cols=49 Identities=20% Similarity=0.496 Sum_probs=32.5
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHH------hh--CCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWL------HG--HSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl------~~--~s~~~~CPvCR~ 73 (229)
+..+..|.||.+-=.-..--.|-..||..||.+-+ +. ......|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34556699998643211123688899999998652 21 246789999965
No 112
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=60.59 E-value=1.7 Score=35.63 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhC-CCCCCCCCccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH-SNYRECPVCKATI 75 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~~v 75 (229)
..+..|.+|.+.=.--.--.|...||..|+..-+... .+...||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456699998542100112588899999986655421 2467999997643
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.53 E-value=1.5 Score=29.16 Aligned_cols=51 Identities=18% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCCCccccccccCCC---CcEE--ccCCCccChhHHHHHHhh----CCCCCCCCCccccc
Q 027023 25 EAGNFECNICFDLAQ---DPIV--TLCGHLFCWPCLYKWLHG----HSNYRECPVCKATI 75 (229)
Q Consensus 25 ~~~~~~C~ICld~~~---~pv~--l~CgH~FC~~CL~~wl~~----~s~~~~CPvCR~~v 75 (229)
..++..|.||.+... +..+ -.|...||..|+..-+.. ......|+.|+...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345677999997532 2233 368889999998753321 23567899996643
No 114
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=57.44 E-value=3.3 Score=33.16 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhC-CCCCCCCCcccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH-SNYRECPVCKAT 74 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~~ 74 (229)
.+..|.||.+.=.--.--.|...||..|+..-+... .+...||.|+..
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 345699998652211113588899999986655421 246789999864
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.92 E-value=6.6 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=21.6
Q ss_pred CccccccccCCCCc----EEccCCCccChhHHH
Q 027023 28 NFECNICFDLAQDP----IVTLCGHLFCWPCLY 56 (229)
Q Consensus 28 ~~~C~ICld~~~~p----v~l~CgH~FC~~CL~ 56 (229)
+..|.+|...+.-- .--.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35899999877532 125799999999964
No 116
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.19 E-value=1.4 Score=31.73 Aligned_cols=52 Identities=19% Similarity=0.425 Sum_probs=33.1
Q ss_pred CCCCCCccccccccCCCCc-EE--ccCCCccChhHHHHHHhh-CCCCCCCCCcccc
Q 027023 23 NSEAGNFECNICFDLAQDP-IV--TLCGHLFCWPCLYKWLHG-HSNYRECPVCKAT 74 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~p-v~--l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~~ 74 (229)
....++..|.||.+.-... ++ -.|...||..|+..-+.. -.....||.|+..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3345566799998754322 22 268888999998643332 1245689999654
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.12 E-value=1.6 Score=29.80 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCCCCccccccccCCCCc--EE--ccCCCccChhHHHHHHh-hCCCCCCCCCccc
Q 027023 23 NSEAGNFECNICFDLAQDP--IV--TLCGHLFCWPCLYKWLH-GHSNYRECPVCKA 73 (229)
Q Consensus 23 ~~~~~~~~C~ICld~~~~p--v~--l~CgH~FC~~CL~~wl~-~~s~~~~CPvCR~ 73 (229)
..+.+...| ||.....+. .+ -.|..+||..|+.--.. .......||.|+.
T Consensus 11 ~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 345566889 798765432 22 36888999999853211 1124678999965
No 118
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.09 E-value=5 Score=25.14 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=27.9
Q ss_pred cccccccCCCCcEE---ccCCCccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 30 ECNICFDLAQDPIV---TLCGHLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 30 ~C~ICld~~~~pv~---l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
.|.||.+.-..... -.|...||..|+..-+.. -.+...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888764332222 268889999999653432 124578999965
No 119
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.16 E-value=19 Score=24.89 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCccccccccCCCC-cEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQD-PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~-pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
....|.-|.+.+.+ ..+..-+..||..|+ .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCF-----------RCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTC-----------BCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCC-----------eeCCCCCCCCC
Confidence 45679999988864 455666777777774 68888776653
No 120
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.08 E-value=12 Score=25.26 Aligned_cols=41 Identities=12% Similarity=0.435 Sum_probs=30.5
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
.....|.-|.+.+.+..+..-+..||..|+ +|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHF-----------NCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCCSCCCCCSSSCCCTTTS-----------BCSSSCCBCCT
T ss_pred cCCCCCccCCCEecceEEEECcceeCCCCC-----------EeCCCCCccCC
Confidence 345679999988876666666777777774 68889887764
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.74 E-value=5.1 Score=29.52 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=11.5
Q ss_pred ccChhHHHHHHhh
Q 027023 49 LFCWPCLYKWLHG 61 (229)
Q Consensus 49 ~FC~~CL~~wl~~ 61 (229)
-||..||..|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.49 E-value=5.2 Score=29.44 Aligned_cols=13 Identities=54% Similarity=1.142 Sum_probs=11.5
Q ss_pred ccChhHHHHHHhh
Q 027023 49 LFCWPCLYKWLHG 61 (229)
Q Consensus 49 ~FC~~CL~~wl~~ 61 (229)
-||..||..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=53.18 E-value=4.8 Score=28.67 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCccccccccCCCCc----EEccCCCccChhHHHHH
Q 027023 27 GNFECNICFDLAQDP----IVTLCGHLFCWPCLYKW 58 (229)
Q Consensus 27 ~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~w 58 (229)
+...|.+|...+.-- .-..||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456799999877522 22579999999997643
No 124
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.08 E-value=4.7 Score=30.56 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCccccccccCCCCc----EEccCCCccChhHHH
Q 027023 27 GNFECNICFDLAQDP----IVTLCGHLFCWPCLY 56 (229)
Q Consensus 27 ~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~ 56 (229)
+...|.+|...|.-- .--.||++||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 345799999877532 225799999999964
No 125
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.44 E-value=13 Score=25.29 Aligned_cols=39 Identities=15% Similarity=0.460 Sum_probs=27.1
Q ss_pred CCccccccccCCC-CcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQ-DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~-~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
....|.-|.+.+. ...+..-+..||..|+ +|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF-----------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTC-----------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccC-----------CcCcCCCCcC
Confidence 4567999998876 3344455666777774 6888887765
No 126
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.94 E-value=15 Score=28.62 Aligned_cols=46 Identities=15% Similarity=0.419 Sum_probs=34.3
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
+-+.|..|...+.......=|..||..|..+... ..|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc-----ccccccccccCC
Confidence 4578999988887554455678899999876544 379999887764
No 127
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=51.38 E-value=1.8 Score=28.34 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhh-CCCCCCCCCccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG-HSNYRECPVCKATI 75 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~~v 75 (229)
..+..|.||.+.-.--.--.|...||..|+..-+.. ..+...||.|....
T Consensus 3 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 346679999874211111368888999998754432 12456899986544
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.76 E-value=15 Score=30.11 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChhHHH
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWPCLY 56 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~ 56 (229)
..++..|.+|...+.-- .--.||++||..|..
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 34567999999877522 225799999999964
No 129
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.67 E-value=14 Score=27.57 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=29.9
Q ss_pred CCccccccccCCCCc-EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
....|.-|.+.+.+. ++..-+..||..|+ +|-.|+..+.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCL-----------KCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTS-----------BCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEccccc-----------CcCcCCCccc
Confidence 456899999988776 46667777777774 6999988775
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.90 E-value=10 Score=31.36 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChhHHHH
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWPCLYK 57 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~ 57 (229)
..++..|.+|...+.-- .-..||++||..|...
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 33456899999877532 2357999999999653
No 131
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=48.13 E-value=3.8 Score=29.52 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=28.8
Q ss_pred CCCCCccccccccCCCCcEEc--cCC---CccChhHHHHHHhh-CCCCCCCCC-ccc
Q 027023 24 SEAGNFECNICFDLAQDPIVT--LCG---HLFCWPCLYKWLHG-HSNYRECPV-CKA 73 (229)
Q Consensus 24 ~~~~~~~C~ICld~~~~pv~l--~Cg---H~FC~~CL~~wl~~-~s~~~~CPv-CR~ 73 (229)
..++..-| ||........+. .|. .+||..|+. +.. ......||. |+.
T Consensus 22 ~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34456778 998754443332 333 689999985 221 124679999 974
No 132
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.13 E-value=3.8 Score=36.69 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCccccccccCCCCc----EEccCCCccChhHHHHHHhh----CCCCCCCCCccccc
Q 027023 26 AGNFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHG----HSNYRECPVCKATI 75 (229)
Q Consensus 26 ~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~----~s~~~~CPvCR~~v 75 (229)
.+...|.+|...+.-- .-..||++||..|......- ......|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3456799999877522 22579999999998654321 11235677775543
No 133
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=45.90 E-value=42 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=19.2
Q ss_pred CCccccccccCCC-CcEEccCCCccChh
Q 027023 27 GNFECNICFDLAQ-DPIVTLCGHLFCWP 53 (229)
Q Consensus 27 ~~~~C~ICld~~~-~pv~l~CgH~FC~~ 53 (229)
....|..|...+. .+..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 4568999987533 24555699999985
No 134
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.77 E-value=13 Score=24.15 Aligned_cols=39 Identities=13% Similarity=0.523 Sum_probs=25.0
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
...|..|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF-----------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS-----------BCSSSCCBCSS
T ss_pred CCcCccCCCEecceEEEECcccccccCC-----------EeCCCCCcCCC
Confidence 3567777777766555555666666664 57777776653
No 135
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.73 E-value=31 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=20.2
Q ss_pred CCCccccccccCCCC-cEEccCCCccChh
Q 027023 26 AGNFECNICFDLAQD-PIVTLCGHLFCWP 53 (229)
Q Consensus 26 ~~~~~C~ICld~~~~-pv~l~CgH~FC~~ 53 (229)
.....|..|...+.- +..-.||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345789999976543 4555899999985
No 136
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.90 E-value=24 Score=23.88 Aligned_cols=41 Identities=24% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCccccccccCCCC-cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccccc
Q 027023 27 GNFECNICFDLAQD-PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEE 78 (229)
Q Consensus 27 ~~~~C~ICld~~~~-pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~ 78 (229)
....|..|.+.+.+ ..+..-+..||..|+ +|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF-----------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCF-----------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTC-----------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcC-----------EEcCCCCCcCCC
Confidence 44679999987743 234455666777774 688898877643
No 137
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.98 E-value=4.5 Score=27.01 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=31.1
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
...+..|.||.+.-.--.--.|...||..|+..-+.. ......||.|..
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3456789999874221111368888999998753332 124668999964
No 138
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=43.59 E-value=4.1 Score=24.06 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=6.4
Q ss_pred ccccccccCCCC
Q 027023 29 FECNICFDLAQD 40 (229)
Q Consensus 29 ~~C~ICld~~~~ 40 (229)
+.||||+..+..
T Consensus 6 FiCP~C~~~l~s 17 (34)
T 3mjh_B 6 FICPQCMKSLGS 17 (34)
T ss_dssp EECTTTCCEESS
T ss_pred cCCcHHHHHcCC
Confidence 555666555443
No 139
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.19 E-value=10 Score=27.63 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=28.9
Q ss_pred CCccccccccCCCC-c-EE-ccCCCccChhHHHHHHhh-CCCCCCCCCcc
Q 027023 27 GNFECNICFDLAQD-P-IV-TLCGHLFCWPCLYKWLHG-HSNYRECPVCK 72 (229)
Q Consensus 27 ~~~~C~ICld~~~~-p-v~-l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR 72 (229)
++..|.||.+.-.. . +. ..|+..||..|+...+.. ......||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 55679999865432 1 22 579999999999755432 12345566553
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.08 E-value=3.2 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.526 Sum_probs=27.7
Q ss_pred CCCccccccccCCCCcEEc---c--CC-CccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 26 AGNFECNICFDLAQDPIVT---L--CG-HLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l---~--Cg-H~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
++..-| ||.+.-.. ..+ . |. .+||..|+. +.. ..+...||.|++
T Consensus 8 ~e~~~C-~C~~~~~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345667 89875433 333 3 55 689999987 332 225678998864
No 141
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.82 E-value=12 Score=28.21 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChhHHHHHHhhCCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~ 73 (229)
+.+...|..|...+..- .--.||.+||..|...... ....|-.|..
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~---~vRVC~~C~~ 65 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN---GPRLCLLCQR 65 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC---CceECHHHHH
Confidence 44456899999887532 2257999999999754333 2346766644
No 142
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=42.80 E-value=16 Score=26.76 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=34.1
Q ss_pred CCccccccccCCCCc-EEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQDP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
+-+.|..|...+... ....=|..||..|..+... ..|..|.+.|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-----~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-----VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-----CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-----ccCcccCCcCCc
Confidence 347889998888753 3456688899999765433 489999998874
No 143
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=42.74 E-value=31 Score=31.20 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCCccccccccCCCCcEEc--cCCCccChhHHHHHHhh-------CCCCCCCCCcccc
Q 027023 26 AGNFECNICFDLAQDPIVT--LCGHLFCWPCLYKWLHG-------HSNYRECPVCKAT 74 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l--~CgH~FC~~CL~~wl~~-------~s~~~~CPvCR~~ 74 (229)
..+..|.+|-+--.--.-- .|...||..||.+.+.. ......|=+|.-.
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3456788887644221222 78899999999988742 1246789999654
No 144
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=42.50 E-value=16 Score=28.82 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=7.9
Q ss_pred CccccccccCCCCc
Q 027023 28 NFECNICFDLAQDP 41 (229)
Q Consensus 28 ~~~C~ICld~~~~p 41 (229)
...|..|.+.+.+.
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 35566666655544
No 145
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.32 E-value=38 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.474 Sum_probs=20.9
Q ss_pred CCCCccccccccCCCC-cEEccCCCccChh
Q 027023 25 EAGNFECNICFDLAQD-PIVTLCGHLFCWP 53 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~-pv~l~CgH~FC~~ 53 (229)
......|..|...+.- +..-.||..||..
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 4455789999975443 4555799999985
No 146
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.23 E-value=20 Score=26.38 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=35.4
Q ss_pred CCccccccccCCCC---cEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
+-+.|..|...+.+ .....=|..||..|..+.... ...|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~---~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ---DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC---CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC---ccChhhcCCccCc
Confidence 45789999888852 445567889999998776552 2279999998863
No 147
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.74 E-value=29 Score=22.41 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=23.7
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|..|.+.+.+..+..-+..||..|+ +|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECF-----------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTS-----------BCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCCC-----------ccCCCCCcCC
Confidence 457777777665555556666666664 5777776654
No 148
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=39.27 E-value=9.1 Score=30.89 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=30.1
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhh-CCCCCCCCCcccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHG-HSNYRECPVCKAT 74 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~-~s~~~~CPvCR~~ 74 (229)
+..|.+|.+.-.--.--.|...||..|+..-+.. ..+...||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3468888854321122357788999998654442 2356789999764
No 149
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.14 E-value=21 Score=23.61 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=27.3
Q ss_pred CccccccccCCC-CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 28 NFECNICFDLAQ-DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 28 ~~~C~ICld~~~-~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
...|..|.+.+. ...+..-+..||..|+ +|..|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL-----------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC-----------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC-----------CCCCCCCccCC
Confidence 356899988876 4455556667777664 68888877763
No 150
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=39.02 E-value=78 Score=21.44 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCccccccccCC-CCc--EEccCCCccChhHHHH
Q 027023 26 AGNFECNICFDLA-QDP--IVTLCGHLFCWPCLYK 57 (229)
Q Consensus 26 ~~~~~C~ICld~~-~~p--v~l~CgH~FC~~CL~~ 57 (229)
..+..|.+|.+.. ..+ .-+.|.-.||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3568899998754 333 3478999999999875
No 151
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.69 E-value=14 Score=27.35 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=16.5
Q ss_pred cEEccCCCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 41 PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 41 pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
+.-..||+.|+ +.-.....||.|+..
T Consensus 68 ~~C~~CG~~F~--------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK--------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC--------CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec--------ccCCCCCCCcCCCCC
Confidence 34457999982 111235699999874
No 152
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.56 E-value=25 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.445 Sum_probs=23.4
Q ss_pred ccccccccCCC--CcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQ--DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~--~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|..|.+.+. +.++..-+..||..|+ +|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCF-----------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTC-----------BCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCcccC-----------eECCCCCcCC
Confidence 46777777766 3455556666666664 5777766655
No 153
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.03 E-value=3.7 Score=36.08 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=34.5
Q ss_pred CCCccccccccCCCCcEEc----cCC--CccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 26 AGNFECNICFDLAQDPIVT----LCG--HLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l----~Cg--H~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
+..-.||||-....-.++. .=| +.+|.-|-.+|-.. ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~---R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV---RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC---TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec---CcCCcCCCCC
Confidence 6678999999887665553 234 56799998888774 4599999775
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.10 E-value=32 Score=22.37 Aligned_cols=38 Identities=13% Similarity=0.419 Sum_probs=26.2
Q ss_pred CccccccccCCCC----cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQD----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...|.-|.+.+.+ .++..-+..||..|+ +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF-----------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC-----------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC-----------EeccCCCcCC
Confidence 3568888887764 455556777777774 6888877665
No 155
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.01 E-value=15 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=25.9
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...|..|.+.+.+.++..-+..||..|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHF-----------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTC-----------BCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCcC-----------EECCCCCCCC
Confidence 3568888877776666666666666664 5778877665
No 156
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.87 E-value=17 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCCccccccccCCCCc----EEccCCCccChh
Q 027023 25 EAGNFECNICFDLAQDP----IVTLCGHLFCWP 53 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p----v~l~CgH~FC~~ 53 (229)
......|..|.....-+ ..-.||..||..
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 33456899998776544 233799999985
No 157
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.65 E-value=20 Score=23.18 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=21.1
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|.-|.+.+.+..+..-+..||..|+ +|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCF-----------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTT-----------BCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCcC-----------EECCCCCCCC
Confidence 456666666654444445555555553 5666666554
No 158
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=36.17 E-value=11 Score=30.06 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=33.9
Q ss_pred CCccccccccCCCC---cEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQD---PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
+-+.|..|...+.+ .....=|..||..|..+....+ ..|..|.+.|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~---~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---GACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC---EECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccC---CccccCCCcccc
Confidence 34778888887764 4455567889999987655421 269999998864
No 159
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=36.07 E-value=5 Score=26.35 Aligned_cols=45 Identities=20% Similarity=0.548 Sum_probs=27.7
Q ss_pred CCCccccccccCCCCcEE--cc--CC-CccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 26 AGNFECNICFDLAQDPIV--TL--CG-HLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~--l~--Cg-H~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
++..-| ||.+......+ -. |. .+||..|+. +.. ..+...||.|++
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345667 89875433222 13 65 699999987 332 224678998864
No 160
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.57 E-value=18 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=24.0
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|.-|.+.+...++..-+..||..|+ +|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCA-----------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTS-----------CCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcC-----------EeCCCCCCCC
Confidence 457777777766555556666666664 5777776665
No 161
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.17 E-value=15 Score=24.49 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=27.8
Q ss_pred CCCCccccccccCCCCc---EE-c-cCCCccChhHHHH------HHh-hCCCCCCCCCcc
Q 027023 25 EAGNFECNICFDLAQDP---IV-T-LCGHLFCWPCLYK------WLH-GHSNYRECPVCK 72 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p---v~-l-~CgH~FC~~CL~~------wl~-~~s~~~~CPvCR 72 (229)
.+....|++|.....+- +. - .|.-+||..|+.- -+. .......||.|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34567899999876533 22 2 6888999999831 111 111245788775
No 162
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.70 E-value=46 Score=21.96 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=25.8
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|..|.+.+.+..+..-+..||..|+ +|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRECL-----------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTTC-----------BCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhhC-----------CcccCCCcCC
Confidence 568888877766555566666777664 6888877765
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.40 E-value=20 Score=23.75 Aligned_cols=38 Identities=13% Similarity=0.410 Sum_probs=28.6
Q ss_pred ccccccccCCCC----cEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 29 FECNICFDLAQD----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 29 ~~C~ICld~~~~----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
..|..|.+.+.+ .++..-+..||..|+ +|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF-----------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC-----------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC-----------ChhhCCCcCCC
Confidence 568999988875 566667777888775 68889887763
No 164
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=17 Score=24.42 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=28.6
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
..|..|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDCF-----------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTS-----------SCSSSCCCCCS
T ss_pred CcCccccCEeccceEEECCceeCccCC-----------ccccCCCCCCC
Confidence 479999988876666667777777775 68888887753
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.94 E-value=27 Score=22.97 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=26.8
Q ss_pred CCccccccccCCC--CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 27 GNFECNICFDLAQ--DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 27 ~~~~C~ICld~~~--~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
....|.-|.+.+. +.++..-+..||..|+ .|-.|+..+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF-----------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTC-----------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccC-----------eECCCCCCCCC
Confidence 3467888888774 4455556666777664 57788777653
No 166
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.53 E-value=1.8 Score=31.83 Aligned_cols=41 Identities=22% Similarity=0.479 Sum_probs=28.1
Q ss_pred CccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+..||+|...+.- .=++.+|..|-..+.+ ...||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEM----KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEE----EEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchhhc----cccCcchhhHHH
Confidence 3899999987642 1234458888654443 248999999887
No 167
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.05 E-value=93 Score=19.66 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=25.9
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC--CCCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v~~ 77 (229)
.+..+.|.+|-..+... .-|...++.+ .....|++|.+.+..
T Consensus 15 ~~~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 15 ERRRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSCSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 34568999998776643 2233333322 234689999887753
No 168
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.98 E-value=57 Score=21.59 Aligned_cols=39 Identities=28% Similarity=0.605 Sum_probs=28.2
Q ss_pred CccccccccCCC--CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 28 NFECNICFDLAQ--DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 28 ~~~C~ICld~~~--~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
...|..|.+.+. +.++..-+..||..|+ +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF-----------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTC-----------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEECccccccccC-----------chhhCCCccCC
Confidence 457899988887 5556666777777774 68888877754
No 169
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.49 E-value=44 Score=22.19 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=25.8
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|..|.+.+.+.++..-+..||..|+ .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPECF-----------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTSC-----------BCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceeccccC-----------CccCCCCccC
Confidence 468888887776666566666666664 6788877664
No 170
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.44 E-value=3.3 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=12.8
Q ss_pred cCCCccChhHHHHHHh
Q 027023 45 LCGHLFCWPCLYKWLH 60 (229)
Q Consensus 45 ~CgH~FC~~CL~~wl~ 60 (229)
.|++.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999876533
No 171
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=32.09 E-value=1.1e+02 Score=20.39 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.0
Q ss_pred CCCCccccccccCCCC
Q 027023 25 EAGNFECNICFDLAQD 40 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~ 40 (229)
....+.|.+|-..+..
T Consensus 14 ~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCBCSSSCCBCSS
T ss_pred CCcCeECCCCCCccCC
Confidence 3456899999887764
No 172
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.43 E-value=23 Score=22.95 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.8
Q ss_pred ccccccccCCCC--cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQD--PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~--pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..|..|.+.+.+ .++..-+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCF-----------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTT-----------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCC-----------cccccCCccC
Confidence 467788877763 355556666666664 5777776665
No 173
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.37 E-value=18 Score=24.31 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=26.8
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
....|..|.+.+.+.++..-+..||..|+ +|..|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCF-----------TCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTC-----------BCSSSCCBCT
T ss_pred CCCccccCCCeecceeEEECCccccHHhc-----------CcccCCCccC
Confidence 34568888877776666566666776664 6888877665
No 174
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.34 E-value=6.7 Score=26.00 Aligned_cols=44 Identities=20% Similarity=0.509 Sum_probs=27.6
Q ss_pred CCCccccccccCCCCcEEc---c--CC-CccChhHHHHHHhh-CCCCCCCCCccc
Q 027023 26 AGNFECNICFDLAQDPIVT---L--CG-HLFCWPCLYKWLHG-HSNYRECPVCKA 73 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l---~--Cg-H~FC~~CL~~wl~~-~s~~~~CPvCR~ 73 (229)
++..-| ||.+... ...+ . |. .+||..|+. +.. ......||.|+.
T Consensus 9 ~e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 345667 8988543 3333 3 54 799999986 221 224678999864
No 175
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.35 E-value=58 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=16.8
Q ss_pred ccccccccCCCCc-EEccCCCccChhHHHHHHh
Q 027023 29 FECNICFDLAQDP-IVTLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 29 ~~C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~ 60 (229)
+.|..|...+... ....=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 5566666555432 2334455666666655544
No 176
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.32 E-value=61 Score=20.38 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=24.6
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhC--CCCCCCCCccccccc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATIEE 77 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v~~ 77 (229)
+..+.|.+|-..+... .-|...++.+ .....|++|.+.+..
T Consensus 12 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 4568899887766543 2233333322 245789999887753
No 177
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.29 E-value=51 Score=22.53 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=12.6
Q ss_pred CCCCccccccccCCCCc
Q 027023 25 EAGNFECNICFDLAQDP 41 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p 41 (229)
.+..+.|.+|-..+...
T Consensus 13 ~~~~~~C~~C~~~f~~~ 29 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSL 29 (107)
T ss_dssp CCCCCBCTTTCCBCSSH
T ss_pred CCcCeECCCCCCccCCH
Confidence 34568999999887654
No 178
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.12 E-value=16 Score=28.06 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCccccccccCCC--Cc---EEccCCCccChhHHHHHHh-hCCCCCCCCCcccc
Q 027023 26 AGNFECNICFDLAQ--DP---IVTLCGHLFCWPCLYKWLH-GHSNYRECPVCKAT 74 (229)
Q Consensus 26 ~~~~~C~ICld~~~--~p---v~l~CgH~FC~~CL~~wl~-~~s~~~~CPvCR~~ 74 (229)
.++..|.+|...+. .. +-..|.|.+|..|-..... .......|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35688999998873 11 2357999999999542211 11234678888764
No 179
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.94 E-value=1.4e+02 Score=21.11 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCCCccccccccCCCC--cEEccCCCccChh
Q 027023 25 EAGNFECNICFDLAQD--PIVTLCGHLFCWP 53 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~--pv~l~CgH~FC~~ 53 (229)
......|..|....-- +..-.||..||..
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cccCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3345789999975543 6666799999985
No 180
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.60 E-value=18 Score=25.23 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=31.3
Q ss_pred CCccccccccCCCCc-EEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDP-IVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
+-+.|..|...+... ....=|..||..|..+. -..+|..|.+.|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~-----~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE-----DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC-----CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh-----cCCccccCCCccc
Confidence 347788888877643 33456788999886432 2358999988886
No 181
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.43 E-value=50 Score=21.78 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=25.9
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
..|..|.+.+.+..+..-+..||..|+ +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPECF-----------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTTC-----------BCSSSCCBSCS
T ss_pred CccccCCCeecceeEEECCCeEecCcC-----------ChhhCCCCCCC
Confidence 468888877776555555666666664 68888777653
No 182
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.27 E-value=48 Score=18.75 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027023 208 DYYLKRLLLFIGFCVLLVLIW 228 (229)
Q Consensus 208 ~~~l~~~~~~~~~~~~~~l~~ 228 (229)
|-|++ +-+.+.+++++|||.
T Consensus 7 ELf~N-Ft~vLI~vlLi~llV 26 (31)
T 1jdm_A 7 ELFLN-FTIVLITVILMWLLV 26 (31)
T ss_dssp SSHHH-HHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHHHHHHH
Confidence 44554 445556667778874
No 183
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.83 E-value=31 Score=22.73 Aligned_cols=40 Identities=28% Similarity=0.706 Sum_probs=27.9
Q ss_pred ccccccccCCCCcE---EccCCCccChhHHHHHHhhCCCCCCCCCc
Q 027023 29 FECNICFDLAQDPI---VTLCGHLFCWPCLYKWLHGHSNYRECPVC 71 (229)
Q Consensus 29 ~~C~ICld~~~~pv---~l~CgH~FC~~CL~~wl~~~s~~~~CPvC 71 (229)
..|--|...+.+.. -..|++.||.+|= .++.. .-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe--~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHD--SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTT--TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHh--hccCCcCC
Confidence 34888888886554 2579999999994 33332 34589987
No 184
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.72 E-value=52 Score=25.99 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCCCccccccccCCCCcEEc-----cCCCccChhHHHHHHhh-------CCCCCCCCCccc
Q 027023 25 EAGNFECNICFDLAQDPIVT-----LCGHLFCWPCLYKWLHG-------HSNYRECPVCKA 73 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l-----~CgH~FC~~CL~~wl~~-------~s~~~~CPvCR~ 73 (229)
+..+..|.||-+-- .++ .|-..||..||...+.. ......|=+|.-
T Consensus 76 DG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 33466789988643 222 57789999999877653 134678988854
No 185
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.86 E-value=37 Score=19.92 Aligned_cols=16 Identities=13% Similarity=0.467 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 027023 213 RLLLFIGFCVLLVLIW 228 (229)
Q Consensus 213 ~~~~~~~~~~~~~l~~ 228 (229)
.++.++.+++|+|.+.
T Consensus 5 ~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666777776653
No 186
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.52 E-value=99 Score=18.21 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCccccccccCCCCcEEccCCCccChhHHHHHHh-hC--CCCCCCCCcccccc
Q 027023 27 GNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLH-GH--SNYRECPVCKATIE 76 (229)
Q Consensus 27 ~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~-~~--s~~~~CPvCR~~v~ 76 (229)
..+.|.+|-..+... .-|...++ .+ .....|++|.+.+.
T Consensus 11 k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 11 KPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 457898887655532 33444443 22 23578999987664
No 187
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.86 E-value=8.3 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=30.6
Q ss_pred CCCCccccccccCCCCc--EE--ccCCCccChhHHHHHHh--hCCCCCCCCCcccc
Q 027023 25 EAGNFECNICFDLAQDP--IV--TLCGHLFCWPCLYKWLH--GHSNYRECPVCKAT 74 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~p--v~--l~CgH~FC~~CL~~wl~--~~s~~~~CPvCR~~ 74 (229)
.++...| +|.....+. .+ -.|..+||..|+.--.. .......||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3456779 998765322 22 36888999999842111 12356799999764
No 188
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=26.74 E-value=1e+02 Score=21.80 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=22.4
Q ss_pred EccCCCccChhHHHHHHhhCCCCCCCCCccccccccccccccCCCCC
Q 027023 43 VTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS 89 (229)
Q Consensus 43 ~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~~~l~p~~~~~~~ 89 (229)
.++|..-||..|-. .|.+| +..+-|--.|++.+.
T Consensus 19 ~T~C~~CyCKkCc~----------HCq~C---F~~KGLGIsYgRkkR 52 (86)
T 1tac_A 19 KTASNRAHAKKSAY----------HSQVA---FITKGLGISYGRKKR 52 (86)
T ss_dssp TTCSSCSSTTTTTT----------TCCCS---CSSTTSSSSSCCCSG
T ss_pred CCCCCCceecchhh----------hhhHH---HccCCCceEeccccc
Confidence 46788889998842 57777 445555556666543
No 189
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.54 E-value=11 Score=26.22 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=26.6
Q ss_pred cccccccCCCCcEEc---cCCCccChhHHHHHHhhCC-CC-CCCCCccc
Q 027023 30 ECNICFDLAQDPIVT---LCGHLFCWPCLYKWLHGHS-NY-RECPVCKA 73 (229)
Q Consensus 30 ~C~ICld~~~~pv~l---~CgH~FC~~CL~~wl~~~s-~~-~~CPvCR~ 73 (229)
.|.||...-.....+ .|...||..|+..-+..-. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455666544333333 5788899999876555322 23 68999975
No 190
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.50 E-value=26 Score=27.47 Aligned_cols=46 Identities=15% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCccccccccCCC---C--cEEccCCCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 27 GNFECNICFDLAQ---D--PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 27 ~~~~C~ICld~~~---~--pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
++..|.+|...+. + .+-..|.|.+|..|=. |... .....|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~-~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE-EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS-SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC-CCcEeeHHHHHH
Confidence 5788999998763 2 2336899999999962 3332 245778888664
No 191
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.36 E-value=49 Score=22.63 Aligned_cols=44 Identities=25% Similarity=0.539 Sum_probs=28.0
Q ss_pred cccccccCCCCcEEc---cCCCccChhHHHHHHhhC-CC-CCCCCCccc
Q 027023 30 ECNICFDLAQDPIVT---LCGHLFCWPCLYKWLHGH-SN-YRECPVCKA 73 (229)
Q Consensus 30 ~C~ICld~~~~pv~l---~CgH~FC~~CL~~wl~~~-s~-~~~CPvCR~ 73 (229)
.|.||...-.....+ .|...||..|+..-+..- .+ .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 677887643322222 688889999987544422 23 568999864
No 192
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=25.26 E-value=1.1e+02 Score=19.19 Aligned_cols=16 Identities=25% Similarity=0.467 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 027023 213 RLLLFIGFCVLLVLIW 228 (229)
Q Consensus 213 ~~~~~~~~~~~~~l~~ 228 (229)
++-|++.|+.++|+|.
T Consensus 34 nfclilicllli~iiv 49 (52)
T 1fjk_A 34 NFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555666554
No 193
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=25.02 E-value=30 Score=25.48 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=29.1
Q ss_pred CCCCccccccccCCCCcEEc-----cCCCccChhHHHHHHhhC-CCCCCCCCcccccc
Q 027023 25 EAGNFECNICFDLAQDPIVT-----LCGHLFCWPCLYKWLHGH-SNYRECPVCKATIE 76 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l-----~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~~v~ 76 (229)
...+..|.+|.+. ...+ .|-..||..|+. +... .+...||.|+..+.
T Consensus 12 ~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4456779999853 2233 366789999986 4321 24567887765443
No 194
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.79 E-value=57 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=25.0
Q ss_pred CCccccccccCCCCc-EEccCCCccChhHHHHHHh
Q 027023 27 GNFECNICFDLAQDP-IVTLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 27 ~~~~C~ICld~~~~p-v~l~CgH~FC~~CL~~wl~ 60 (229)
+-+.|..|...+.+. ....=+..||..|..+...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 557889998887654 3344578899999887665
No 195
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.76 E-value=27 Score=23.02 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCccccccccCCCC-cEEccCCCccCh-hHHHHHHhhCCCCCCCCCccc
Q 027023 27 GNFECNICFDLAQD-PIVTLCGHLFCW-PCLYKWLHGHSNYRECPVCKA 73 (229)
Q Consensus 27 ~~~~C~ICld~~~~-pv~l~CgH~FC~-~CL~~wl~~~s~~~~CPvCR~ 73 (229)
+-+.|..|...+.. .....=|..||. .|..+.+. .+|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-----~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-----PKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-----CCCSSCCC
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-----ccCCCcCC
Confidence 34667777766654 333445667777 57654333 25666653
No 196
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.20 E-value=1.1e+02 Score=17.44 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=20.9
Q ss_pred CCCccccccccCCCCcEEccCCCccChhHHHHHHhhCC--CCCCCCCcc
Q 027023 26 AGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHS--NYRECPVCK 72 (229)
Q Consensus 26 ~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s--~~~~CPvCR 72 (229)
+..+.|.+|-..+... .-|...++.+. ....|++|.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 10 RKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCC
T ss_pred CcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCC
Confidence 3458898887665542 23444444332 356898885
No 197
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.24 E-value=23 Score=25.91 Aligned_cols=29 Identities=21% Similarity=0.435 Sum_probs=18.3
Q ss_pred cCCCccChhHHHHHHhhC-CCCCCCCCccc
Q 027023 45 LCGHLFCWPCLYKWLHGH-SNYRECPVCKA 73 (229)
Q Consensus 45 ~CgH~FC~~CL~~wl~~~-s~~~~CPvCR~ 73 (229)
.|...||..|+..-+..- .+...||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577788888875444421 23567888864
No 198
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.36 E-value=38 Score=24.75 Aligned_cols=34 Identities=21% Similarity=0.577 Sum_probs=22.7
Q ss_pred CCccccccccCCC--CcEEccCCCccChhHHHHHHh
Q 027023 27 GNFECNICFDLAQ--DPIVTLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 27 ~~~~C~ICld~~~--~pv~l~CgH~FC~~CL~~wl~ 60 (229)
+-+.|..|...+. +.....=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 4577788877773 234455577888888776665
No 199
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.88 E-value=4.2 Score=28.82 Aligned_cols=40 Identities=18% Similarity=0.553 Sum_probs=23.8
Q ss_pred ccccccccCCCCcEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 29 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 29 ~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
..||.|...+... =++..|..|-..+.. ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~----~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSL----QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEE----EEECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCC----cccCcchhhHHH
Confidence 6799998766421 113446666443333 127888888775
No 200
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.75 E-value=64 Score=23.11 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=20.4
Q ss_pred CCccccccccCCCC---cEEccCCCccChhHHHHHHh
Q 027023 27 GNFECNICFDLAQD---PIVTLCGHLFCWPCLYKWLH 60 (229)
Q Consensus 27 ~~~~C~ICld~~~~---pv~l~CgH~FC~~CL~~wl~ 60 (229)
+-+.|..|...+.+ .....=|..||..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 44667777776653 23334466777777665554
No 201
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.34 E-value=82 Score=20.80 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=25.3
Q ss_pred ccccccccCCC--CcEEccCCCccChhHHHHHHhhCCCCCCCCCccccccc
Q 027023 29 FECNICFDLAQ--DPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEE 77 (229)
Q Consensus 29 ~~C~ICld~~~--~pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~~ 77 (229)
..|..|.+.+. +.++..-+..||..|+ .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGCF-----------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTTS-----------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEeCCccccccCC-----------eecCCCCccCC
Confidence 46888888776 4444445666666664 68888877653
No 202
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.32 E-value=1.1e+02 Score=19.07 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCCCccccccccCCCCcEEccCCCccChhHHHHHHhhC--CCCCCCCCccccccc
Q 027023 25 EAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGH--SNYRECPVCKATIEE 77 (229)
Q Consensus 25 ~~~~~~C~ICld~~~~pv~l~CgH~FC~~CL~~wl~~~--s~~~~CPvCR~~v~~ 77 (229)
....+.|.+|-..+... .-|....+.+ .....|+.|.+.+..
T Consensus 14 ~~~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 34568899998777653 2233333322 234689999887753
No 203
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.16 E-value=74 Score=20.73 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=26.1
Q ss_pred CccccccccCCCC-----cEEccCCCccChhHHHHHHhhCCCCCCCCCcccccc
Q 027023 28 NFECNICFDLAQD-----PIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIE 76 (229)
Q Consensus 28 ~~~C~ICld~~~~-----pv~l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~v~ 76 (229)
...|.-|.+.+.. .++..-+..||..|+ +|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF-----------HCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTC-----------BCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccC-----------EehhcCCCCC
Confidence 3568888887774 455555666776664 6888887765
No 204
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.13 E-value=1e+02 Score=20.61 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=31.5
Q ss_pred CCCCccccccccCC---CCcEE--ccCCCccChhHHHHHHhhCCCCCCCCCcccc
Q 027023 25 EAGNFECNICFDLA---QDPIV--TLCGHLFCWPCLYKWLHGHSNYRECPVCKAT 74 (229)
Q Consensus 25 ~~~~~~C~ICld~~---~~pv~--l~CgH~FC~~CL~~wl~~~s~~~~CPvCR~~ 74 (229)
..++..|.||.+.- .+..+ -.|.-.|+..|+..-... .+...|+.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP-~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP-EGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCC-SSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCC-CCCcCCccCcCc
Confidence 44567799998653 22333 268889999998643222 246788888653
No 205
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=20.09 E-value=32 Score=28.73 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=25.3
Q ss_pred cccccccCCCCcEE---ccCCCccChhHHHHHHhhC-CC-CCCCCCccc
Q 027023 30 ECNICFDLAQDPIV---TLCGHLFCWPCLYKWLHGH-SN-YRECPVCKA 73 (229)
Q Consensus 30 ~C~ICld~~~~pv~---l~CgH~FC~~CL~~wl~~~-s~-~~~CPvCR~ 73 (229)
.|.+|.+.-..... -.|...||..|+..-+..- .+ ...||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57788753322222 2688899999998655532 23 568999965
Done!