Query 027024
Match_columns 229
No_of_seqs 194 out of 1637
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 2E-50 4.3E-55 338.8 24.2 222 2-226 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 6.6E-44 1.4E-48 294.8 20.9 224 2-226 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 1.7E-41 3.6E-46 322.1 22.9 189 1-208 1-196 (578)
4 PRK09431 asnB asparagine synth 100.0 2.4E-41 5.2E-46 320.1 22.6 188 1-207 1-196 (554)
5 PTZ00077 asparagine synthetase 100.0 8.7E-41 1.9E-45 317.8 22.1 189 1-208 1-206 (586)
6 COG0367 AsnB Asparagine syntha 100.0 2.2E-39 4.8E-44 305.9 19.0 189 1-210 1-204 (542)
7 cd00712 AsnB Glutamine amidotr 100.0 7E-38 1.5E-42 265.1 22.5 185 2-204 1-220 (220)
8 TIGR03104 trio_amidotrans aspa 100.0 2.7E-38 5.9E-43 301.7 21.6 189 1-207 1-227 (589)
9 PRK07631 amidophosphoribosyltr 100.0 6.9E-37 1.5E-41 283.8 22.9 205 1-223 11-264 (475)
10 PRK08525 amidophosphoribosyltr 100.0 1.1E-36 2.3E-41 281.7 23.8 206 1-223 1-256 (445)
11 TIGR03108 eps_aminotran_1 exos 100.0 5E-37 1.1E-41 295.1 20.8 188 1-206 1-227 (628)
12 PRK07272 amidophosphoribosyltr 100.0 3E-36 6.5E-41 280.1 22.5 208 1-225 11-268 (484)
13 PRK06388 amidophosphoribosyltr 100.0 1E-35 2.2E-40 276.2 22.8 205 1-223 19-272 (474)
14 PRK06781 amidophosphoribosyltr 100.0 1.9E-35 4.1E-40 274.3 24.1 205 1-223 11-264 (471)
15 TIGR01536 asn_synth_AEB aspara 100.0 2.7E-35 5.9E-40 274.3 23.2 169 28-204 16-222 (467)
16 PRK07847 amidophosphoribosyltr 100.0 2.8E-35 6E-40 274.9 23.1 206 1-223 23-283 (510)
17 PRK07349 amidophosphoribosyltr 100.0 4.1E-35 8.9E-40 273.2 24.0 207 1-223 33-293 (500)
18 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 7E-36 1.5E-40 246.2 15.0 172 1-191 1-180 (181)
19 PRK08341 amidophosphoribosyltr 100.0 1E-34 2.2E-39 267.5 22.9 200 1-222 4-251 (442)
20 PRK09123 amidophosphoribosyltr 100.0 1.1E-34 2.4E-39 269.8 23.3 205 1-223 21-276 (479)
21 PRK05793 amidophosphoribosyltr 100.0 2.6E-34 5.7E-39 267.2 23.5 207 1-223 14-269 (469)
22 PLN02440 amidophosphoribosyltr 100.0 6.3E-34 1.4E-38 265.3 24.0 205 1-222 1-255 (479)
23 KOG0571 Asparagine synthase (g 100.0 2E-35 4.3E-40 263.8 10.8 192 1-211 1-199 (543)
24 cd00715 GPATase_N Glutamine am 100.0 4.4E-33 9.5E-38 240.5 23.9 201 2-219 1-251 (252)
25 PRK09246 amidophosphoribosyltr 100.0 2.5E-33 5.5E-38 262.6 21.4 209 1-225 1-272 (501)
26 TIGR01134 purF amidophosphorib 100.0 1.1E-32 2.3E-37 254.9 24.1 205 2-223 1-254 (442)
27 cd00714 GFAT Glutamine amidotr 100.0 1.6E-32 3.4E-37 232.0 19.2 172 2-193 1-214 (215)
28 PRK00331 glucosamine--fructose 100.0 6.2E-32 1.3E-36 258.9 22.8 183 1-203 1-225 (604)
29 TIGR01135 glmS glucosamine--fr 100.0 9.1E-31 2E-35 250.9 20.9 183 2-204 1-225 (607)
30 cd01907 GlxB Glutamine amidotr 100.0 1E-30 2.2E-35 225.5 18.8 175 2-193 1-248 (249)
31 PTZ00295 glucosamine-fructose- 100.0 2.8E-30 6.1E-35 248.9 20.7 183 1-203 24-255 (640)
32 cd00352 Gn_AT_II Glutamine ami 100.0 9.8E-30 2.1E-34 213.2 18.7 180 2-192 1-220 (220)
33 cd01909 betaLS_CarA_N Glutamin 100.0 7.1E-30 1.5E-34 212.8 16.4 122 74-205 50-199 (199)
34 COG0034 PurF Glutamine phospho 100.0 2.2E-29 4.7E-34 227.7 19.4 208 1-223 4-264 (470)
35 KOG0572 Glutamine phosphoribos 100.0 7.8E-28 1.7E-32 212.5 17.6 212 1-225 1-274 (474)
36 PLN02981 glucosamine:fructose- 100.0 2.6E-27 5.7E-32 229.3 19.9 189 1-203 1-277 (680)
37 PF13537 GATase_7: Glutamine a 100.0 7.1E-28 1.5E-32 187.2 11.1 110 61-177 8-125 (125)
38 PTZ00394 glucosamine-fructose- 100.0 5.5E-27 1.2E-31 226.6 19.4 190 1-203 1-280 (670)
39 COG0449 GlmS Glucosamine 6-pho 99.9 4.6E-25 9.9E-30 207.1 16.2 181 1-203 1-221 (597)
40 PF13522 GATase_6: Glutamine a 99.9 1.7E-24 3.6E-29 170.1 13.7 120 42-171 1-133 (133)
41 TIGR03442 conserved hypothetic 99.8 5.3E-18 1.2E-22 146.5 13.6 134 53-201 84-248 (251)
42 KOG0573 Asparagine synthase [A 99.8 5.6E-18 1.2E-22 153.0 12.8 164 1-189 1-171 (520)
43 cd00713 GltS Glutamine amidotr 99.7 1.1E-16 2.5E-21 146.0 14.7 137 51-198 201-396 (413)
44 KOG1268 Glucosamine 6-phosphat 99.7 3.2E-16 6.9E-21 143.8 13.7 182 1-198 1-278 (670)
45 cd01908 YafJ Glutamine amidotr 99.7 1.4E-15 3.1E-20 131.7 13.2 133 53-196 82-256 (257)
46 PF00310 GATase_2: Glutamine a 99.4 1.1E-12 2.4E-17 118.7 11.6 114 49-172 193-361 (361)
47 PRK11750 gltB glutamate syntha 99.1 4E-10 8.6E-15 115.2 12.4 71 124-196 332-404 (1485)
48 PF13230 GATase_4: Glutamine a 98.9 1.3E-08 2.9E-13 88.9 11.2 141 53-200 73-254 (271)
49 PF09147 DUF1933: Domain of un 98.1 0.00011 2.3E-09 59.9 12.7 111 75-195 48-187 (201)
50 COG0121 Predicted glutamine am 97.8 0.00035 7.5E-09 60.6 11.7 38 53-90 72-116 (252)
51 COG0067 GltB Glutamate synthas 97.7 0.0004 8.8E-09 63.0 11.3 134 51-198 202-362 (371)
52 KOG0399 Glutamate synthase [Am 94.2 0.16 3.4E-06 52.5 7.5 70 124-195 406-477 (2142)
53 PF10736 DUF2527: Protein of u 66.5 1.6 3.5E-05 26.0 -0.3 11 1-11 1-11 (38)
54 COG0067 GltB Glutamate synthas 51.4 14 0.0003 34.0 2.9 47 124-172 323-369 (371)
55 PF00310 GATase_2: Glutamine a 51.0 13 0.00029 33.9 2.7 22 28-49 19-46 (361)
56 PF04566 RNA_pol_Rpb2_4: RNA p 46.4 28 0.00061 23.5 3.1 27 132-159 33-61 (63)
57 COG4911 Uncharacterized conser 34.6 94 0.002 23.5 4.5 25 120-144 73-97 (123)
58 TIGR03823 FliZ flagellar regul 33.9 24 0.00051 28.5 1.3 19 74-92 33-51 (168)
59 PRK11582 flagella biosynthesis 33.2 25 0.00054 28.4 1.4 19 74-92 33-51 (169)
60 PF08973 TM1506: Domain of unk 31.4 21 0.00045 28.0 0.6 27 129-158 10-36 (134)
61 KOG0278 Serine/threonine kinas 23.6 2.1E+02 0.0045 25.3 5.4 25 183-207 190-214 (334)
62 PF12594 DUF3764: Protein of u 23.0 35 0.00076 24.7 0.5 20 145-164 27-46 (86)
63 PF08144 CPL: CPL (NUC119) dom 21.1 45 0.00097 26.5 0.8 26 148-173 2-27 (148)
64 COG4315 Uncharacterized protei 20.3 87 0.0019 24.2 2.2 32 125-161 86-117 (138)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=2e-50 Score=338.83 Aligned_cols=222 Identities=64% Similarity=1.098 Sum_probs=196.9
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEeCCCCCCCCCeEeeCCcEEEEEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r~~~~~~~QP~~~~~~~~~lv~n 81 (229)
++||-+.++.||++|.+|.++++ +....++++.+....|++..+.+++...++++..+...-.|-+++.++++++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 58999999999999998876554 3344679999999999998888988899998776555556667777788999999
Q ss_pred EEEccchhHHHHhCCCCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 027024 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (229)
Q Consensus 82 G~I~N~~eL~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~ 161 (229)
|+|||+.+|+++|+...+.+|+++++++|++|++.|+.+..+++++|+|+|||+|||..++++++|||++|++||||+..
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~ 158 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA 158 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence 99999999999998755667777779999999777777777899999999999999999999999999999999999987
Q ss_pred CCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEeCCCCCCccccCCccc--ccCceEEE
Q 027024 162 ADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 226 (229)
Q Consensus 162 ~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~~~~~~~~d~~--~~g~~~~~ 226 (229)
.+|.++||||+++|...|.+.+.+|||||+|.. .+++++|++|.|+++++||+||| |||++|||
T Consensus 159 ~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 159 ADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred CCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 678999999999999999888999999999987 67899999999999999999999 99999997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=6.6e-44 Score=294.76 Aligned_cols=224 Identities=55% Similarity=0.988 Sum_probs=208.4
Q ss_pred eeEeeccccCCchhhhcCCCCCCC--CcchHHHHHHHhHhcCCCCccEEECCcEEEEEEeCCCCCCCCCeEeeCCcEEEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r~~~~~~~QP~~~~~~~~~lv 79 (229)
++||.+.++.||+||.+|++..+. +++...++++.+....|++..+.+++...|++++.+.....|..+..-+++.++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 689999999999999999966443 799999999999999999999999999999999866555555555555789999
Q ss_pred EEEEEccchhHHHHhCCCCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEE
Q 027024 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWG 159 (229)
Q Consensus 80 ~nG~I~N~~eL~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~ 159 (229)
|-|.|.|...|+++||++++.+|+++++++|+...|+||+|..++++.|+|.||||+||..++++++|||+-|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEeCCCCCCccccCCccc--ccCceEEE
Q 027024 160 ITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 226 (229)
Q Consensus 160 ~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~~~~~~~~d~~--~~g~~~~~ 226 (229)
.+.||.++||++...|...|++....||+|++|..+ +++++|.+|.++++++||+||| |||++|||
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccccccCcccCcceeeeC
Confidence 998899999999999999999999999999999996 6799999999999999999999 99999997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.7e-41 Score=322.06 Aligned_cols=189 Identities=24% Similarity=0.403 Sum_probs=162.5
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~ 77 (229)
||||+|......... .....+.+|++.|+|||||+.+++..++++|||.| .+...+.||+++.+++++
T Consensus 1 MCGI~g~~~~~~~~~---------~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~ 71 (578)
T PLN02549 1 MCGILAVLGCSDDSQ---------AKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIV 71 (578)
T ss_pred CCcEEEEEeCCCCcc---------hhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEE
Confidence 999999884221100 12245778999999999999999998889999999 344578999998888899
Q ss_pred EEEEEEEccchhHHHHhC-C---CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCC
Q 027024 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (229)
Q Consensus 78 lv~nG~I~N~~eL~~~lg-~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~ 153 (229)
+++||||||+.+|+++|. + +.+|+|+ ++++|++|| .+++++|+|+|||++||..++++++||||+|+
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~f~t~sD~Ev--il~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~Gi 142 (578)
T PLN02549 72 VTANGEIYNHKELREKLKLHKFRTGSDCEV--IAHLYEEHG-------EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGI 142 (578)
T ss_pred EEEEEEEEcHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEECCCCC
Confidence 999999999999999985 3 4556665 589999999 78999999999999999999999999999999
Q ss_pred ccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEeCCCCC
Q 027024 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNK 208 (229)
Q Consensus 154 rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~ 208 (229)
|||||+...++.++||||+++|...+. .|.+|||||++.++.+++++||.+.+.
T Consensus 143 kPLyyg~~~~g~~~fASE~KaL~~~~~-~I~~lpPGh~l~~~~~~~~~y~~~~~~ 196 (578)
T PLN02549 143 TPLYIGWGLDGSVWFASEMKALCDDCE-RFEEFPPGHYYSSKAGGFRRWYNPPWF 196 (578)
T ss_pred CCeEEEEecCCeEEEEecHHHHHHHhC-CEEEeCCCeEEEEcCCCEEEEEecccC
Confidence 999999875678999999999999874 699999999999976779999998764
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=2.4e-41 Score=320.09 Aligned_cols=188 Identities=21% Similarity=0.393 Sum_probs=161.5
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~ 77 (229)
||||+|......... .....+.+|+++|.|||||+.+++..++++|||+| .+...+.||+.+.++.++
T Consensus 1 MCGI~g~~~~~~~~~---------~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~ 71 (554)
T PRK09431 1 MCGIFGILDIKTDAD---------ELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHV 71 (554)
T ss_pred CceEEEEEcCCCcch---------hHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEE
Confidence 999999874222110 01246789999999999999999998899999999 344578999988888999
Q ss_pred EEEEEEEccchhHHHHhC--C---CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCC
Q 027024 78 CLFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (229)
Q Consensus 78 lv~nG~I~N~~eL~~~lg--~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G 152 (229)
+++||||||+.+|+++|. + +.+|+|+ ++++|++|| .+++++|+|+|||++||..++++++||||+|
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Ev--il~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~laRD~~G 142 (554)
T PRK09431 72 LAVNGEIYNHQELRAELGDKYAFQTGSDCEV--ILALYQEKG-------PDFLDDLDGMFAFALYDSEKDAYLIARDPIG 142 (554)
T ss_pred EEEEEEEecHHHHHHHHhccCCcCCCCHHHH--HHHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEeCCCC
Confidence 999999999999999983 2 4555555 589999999 7899999999999999999999999999999
Q ss_pred CccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEeCCCC
Q 027024 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKN 207 (229)
Q Consensus 153 ~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~ 207 (229)
+|||||+...++.++||||+++|...+. .|.+|||||++.++++++++||.+.+
T Consensus 143 ikPLyy~~~~~~~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 143 IIPLYYGYDEHGNLYFASEMKALVPVCK-TIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred CcceEEEEeCCCeEEEecchHHHHHhcC-CEEEECCCeEEEECCCcEEEecCCCc
Confidence 9999999984478999999999998874 69999999999887667999999876
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=317.77 Aligned_cols=189 Identities=23% Similarity=0.383 Sum_probs=159.0
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC-----CcEEEEEEe---CCCCCCCCCeEee
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG-----DNVTLAYTH---QNESPLRQRSFAV 72 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~-----~~~~lgh~r---~~~~~~~QP~~~~ 72 (229)
||||+|........ .....++..|+++|+|||||+.+++.. +.++|||.| .+...+.||+.+.
T Consensus 1 MCGI~gi~~~~~~~---------~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~ 71 (586)
T PTZ00077 1 MCGILAIFNSKGER---------HELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDD 71 (586)
T ss_pred CceEEEEEecCCch---------hhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCC
Confidence 99999988422110 011245678999999999999999974 578999999 3445689999988
Q ss_pred CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCCCchh-hhhcccccceeEEEEECCCCEEE
Q 027024 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN-HVVGHLSGYFAFIVYDKSTSTLF 145 (229)
Q Consensus 73 ~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~~~~~-~~l~~L~G~fa~~i~d~~~~~l~ 145 (229)
+++++++|||||||+.+|+++| |+ +.+|+|+ ++++|++|| . +++++|+|+|||++||..+++++
T Consensus 72 d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Ev--il~ly~~~G-------~~~~l~~L~G~FAf~i~D~~~~~l~ 142 (586)
T PTZ00077 72 DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEI--IGHLYKEYG-------PKDFWNHLDGMFATVIYDMKTNTFF 142 (586)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHH--HHHHHHHhC-------HHHHHHhcCCCEEEEEEECCCCEEE
Confidence 8899999999999999999998 34 4555555 589999998 6 89999999999999999999999
Q ss_pred EEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCC--cEEEEeCCCCC
Q 027024 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVG--GLRSFENPKNK 208 (229)
Q Consensus 146 ~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~--~~~~y~~~~~~ 208 (229)
+||||+|+|||||+...++.++||||+++|...+. .|.+|||||++.++.+ ++++||.+.+.
T Consensus 143 ~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~~~~~~~~y~~~~~~ 206 (586)
T PTZ00077 143 AARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCV-EVKQFPPGHYYDQTKEKGEFVRYYNPNWH 206 (586)
T ss_pred EEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcC-CEEEeCCCcEEEecCCcceeEEecCCccc
Confidence 99999999999999854678999999999998874 6999999999998753 58999998764
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=305.87 Aligned_cols=189 Identities=24% Similarity=0.396 Sum_probs=164.3
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~ 77 (229)
||||+|....+ . ... ....+.+|.+.|.|||||..++|...++++||.| .+...+.||+...+++++
T Consensus 1 MCGI~g~~~~~-~-~~~--------~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~ 70 (542)
T COG0367 1 MCGIAGILNFK-N-LID--------AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYA 70 (542)
T ss_pred CCceeeeeccc-c-ccc--------chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEE
Confidence 99999998654 1 110 1347889999999999999999999999999999 344568999988667799
Q ss_pred EEEEEEEccchhHHHHhC---C---CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCC
Q 027024 78 CLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (229)
Q Consensus 78 lv~nG~I~N~~eL~~~lg---~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~ 151 (229)
++|||||||+.||+++|. + +.+|+|+ ++++|++|| .++++.|+|+|||++||..+++|+++|||+
T Consensus 71 l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEv--il~~y~~~g-------~~~~~~l~G~fAfai~d~~~~~l~laRD~~ 141 (542)
T COG0367 71 IVYNGEIYNVEELRKELREAGYEFRTYSDTEV--ILTLYEEWG-------EDCVEHLNGMFAFAIYDETRQKLFLARDPF 141 (542)
T ss_pred EEECCEeeeHHHHHHHHHhcCceeccccchHH--HHHHHHHHH-------HHHHHHhccceEEEEEECCCCEEEEEecCC
Confidence 999999999999999994 4 5666666 489999999 789999999999999999999999999999
Q ss_pred CCccEEEEEeCCCEEEEEechhhhhhh-----ccCccEEeCCCeEEEEcCCc-EEEEeCCCCCCc
Q 027024 152 GKVPLYWGITADGHVAFADDADLLKGA-----CGKSLASFPQGCFFSTAVGG-LRSFENPKNKIT 210 (229)
Q Consensus 152 G~rPL~y~~~~~~~~~faSe~~aL~~~-----~~~~i~~lpPG~~~~~~~~~-~~~y~~~~~~~~ 210 (229)
|+|||||+.. ++.++||||.++|..+ + +.|++|||||++.++.++ +.+||.+.+...
T Consensus 142 GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~-~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~ 204 (542)
T COG0367 142 GVKPLYYTSK-NENLAFASEIKALLAHPVVRFL-RDIKELPPGHLLEFTDGGLIRRYWRLSEKTS 204 (542)
T ss_pred CccccEEEec-CCceEEEechhhhhhCCccccc-CCeEEcCCCcEEEEcCCCceeeeeccccccc
Confidence 9999999998 5679999999999998 5 469999999999998777 999999887633
No 7
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=7e-38 Score=265.12 Aligned_cols=185 Identities=23% Similarity=0.439 Sum_probs=155.5
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEeC---CCCCCCCCeEeeCCcEEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIFC 78 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r~---~~~~~~QP~~~~~~~~~l 78 (229)
|||+|....+.. +.....+..|+..|+|||||+.+++..++++|||+|. +...+.||+...++++++
T Consensus 1 cGI~g~~~~~~~----------~~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~ 70 (220)
T cd00712 1 CGIAGIIGLDGA----------SVDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVL 70 (220)
T ss_pred CeEEEEEeCCCC----------cchHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEE
Confidence 899998853321 1124578899999999999999999999999999992 223689999987788999
Q ss_pred EEEEEEccchhHHHHhC---C-CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCc
Q 027024 79 LFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (229)
Q Consensus 79 v~nG~I~N~~eL~~~lg---~-~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~r 154 (229)
++||+|||+.+|+++|+ . ..+.+|+++++++|++|| .++++.|+|+|||++||..+++++++||++|.|
T Consensus 71 ~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g-------~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~ 143 (220)
T cd00712 71 VFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWG-------EDCLERLNGMFAFALWDKRKRRLFLARDRFGIK 143 (220)
T ss_pred EEEEEEeCHHHHHHHHHhcCCcCCCCChHHHHHHHHHHHh-------HHHHHHhhheEEEEEEECCCCEEEEEECCCCCE
Confidence 99999999999999883 2 234444555689999998 799999999999999999999999999999999
Q ss_pred cEEEEEeCCCEEEEEechhhhhhhcc--------------------------CccEEeCCCeEEEEcCCc--EEEEeC
Q 027024 155 PLYWGITADGHVAFADDADLLKGACG--------------------------KSLASFPQGCFFSTAVGG--LRSFEN 204 (229)
Q Consensus 155 PL~y~~~~~~~~~faSe~~aL~~~~~--------------------------~~i~~lpPG~~~~~~~~~--~~~y~~ 204 (229)
||||+.. ++.++||||.++|...+. ++|++|||||++.++.++ .++||+
T Consensus 144 pLy~~~~-~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 144 PLYYGRD-GGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred eeEEEEE-CCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 9999998 578999999999977533 479999999999998764 568884
No 8
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=2.7e-38 Score=301.72 Aligned_cols=189 Identities=21% Similarity=0.345 Sum_probs=156.5
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEe---CCC-CCCCCCeEeeCCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNE-SPLRQRSFAVKDEI 76 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~-~~~~QP~~~~~~~~ 76 (229)
||||.|....+... . ....+..|++.|+|||||+.++|.+++++|||+| .+. ..+.||+.++++++
T Consensus 1 McGI~G~~~~~~~~-~---------~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~ 70 (589)
T TIGR03104 1 MCGICGEIRFDGQA-P---------DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGL 70 (589)
T ss_pred CcEEEEEEecCCCc-c---------hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCE
Confidence 99999987322110 0 1246789999999999999999999999999999 232 36889999888889
Q ss_pred EEEEEEEEccchhHHHHh---CC-CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCC
Q 027024 77 FCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (229)
Q Consensus 77 ~lv~nG~I~N~~eL~~~l---g~-~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G 152 (229)
+++|||+|||+.||+++| |+ ..+.+|+++++++|++|| .+++++|+|+|||++||..+++++++|||+|
T Consensus 71 ~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G-------~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G 143 (589)
T TIGR03104 71 ALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAWG-------RDCVSRFNGMFAFAIWERDSGRLLLARDRLG 143 (589)
T ss_pred EEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH-------HHHHHHhhcceEEEEEeCCCCEEEEEecCCC
Confidence 999999999999999998 44 333444444589999999 7999999999999999999999999999999
Q ss_pred CccEEEEEeCCCEEEEEechhhhhhhc---------------------------cCccEEeCCCeEEEEcC-Cc--EEEE
Q 027024 153 KVPLYWGITADGHVAFADDADLLKGAC---------------------------GKSLASFPQGCFFSTAV-GG--LRSF 202 (229)
Q Consensus 153 ~rPL~y~~~~~~~~~faSe~~aL~~~~---------------------------~~~i~~lpPG~~~~~~~-~~--~~~y 202 (229)
+|||||+.. ++.++||||+++|++.+ .+.|..|||||++.++. ++ .++|
T Consensus 144 ~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~y 222 (589)
T TIGR03104 144 IKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSY 222 (589)
T ss_pred CCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEee
Confidence 999999998 67899999999987532 14689999999998863 43 5689
Q ss_pred eCCCC
Q 027024 203 ENPKN 207 (229)
Q Consensus 203 ~~~~~ 207 (229)
|.+..
T Consensus 223 w~~~~ 227 (589)
T TIGR03104 223 WSLDA 227 (589)
T ss_pred ccCCC
Confidence 98753
No 9
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.9e-37 Score=283.78 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=163.3
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||....... ....-.++.+|+|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~~-------------~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~ 77 (475)
T PRK07631 11 ECGVFGIWGHEEA-------------AQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKA 77 (475)
T ss_pred CCcEEEEECCchh-------------HHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCE
Confidence 9999999863211 23456789999999999999763 2457
Q ss_pred EEEEEeC-----CCCCCCCCeE--eeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 027024 54 TLAYTHQ-----NESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~--~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (229)
+|||+|. ....+.||+. +.+++++++|||+|+|+++|+++| |+ +.+|+|+ ++++|.+++.... +
T Consensus 78 gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEV--i~~Li~~~~~~~~~e 155 (475)
T PRK07631 78 AIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEV--LAHLIKRSGAPTLKE 155 (475)
T ss_pred EEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHH--HHHHHHHHcCCCHHH
Confidence 9999992 2236799996 345789999999999999999998 54 4555555 5789988762111 3
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.+||...+.+.+++|+||+++.++++++
T Consensus 156 ai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~ 232 (475)
T PRK07631 156 QIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGM 232 (475)
T ss_pred HHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcE
Confidence 55789999999999999995 67999999999999999998 5689999999999888877899999999999988777
Q ss_pred EEEeC-CCCCCc-------cccCCcccccCce
Q 027024 200 RSFEN-PKNKIT-------AVPAAEEEIWGAT 223 (229)
Q Consensus 200 ~~y~~-~~~~~~-------~~~~~d~~~~g~~ 223 (229)
+.+.. +..+.+ ++.|+||.|.|..
T Consensus 233 ~~~~~~~~~~~~~C~fE~iYfarpdS~~~g~~ 264 (475)
T PRK07631 233 RSERFAPNQNRSICSMEYIYFARPDSNVDGIN 264 (475)
T ss_pred EEEecCCCCCcccceEEEEEeecCCcccCCeE
Confidence 76543 222222 7899999998864
No 10
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-36 Score=281.69 Aligned_cols=206 Identities=15% Similarity=0.189 Sum_probs=161.2
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE-C--------------------------CcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-G--------------------------DNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~--------------------------~~~ 53 (229)
||||||....... ...+..|+.+|+|||+|+.++.. + +++
T Consensus 1 MCGI~G~~~~~~~-------------~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~ 67 (445)
T PRK08525 1 MCAVVGVINSKNA-------------AKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEI 67 (445)
T ss_pred CceEEEEEcCccH-------------HHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcE
Confidence 9999999864321 23456899999999999999865 1 357
Q ss_pred EEEEEe---C--CCCCCCCCeEe--eCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 027024 54 TLAYTH---Q--NESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (229)
Q Consensus 54 ~lgh~r---~--~~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (229)
+|||+| . ....+.||+.+ .+++++++|||+|||+.+|+++| |+ +.+|+|+ ++++|..++.... +
T Consensus 68 ~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEv--i~~l~~~~~~~~~~e 145 (445)
T PRK08525 68 AIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTEN--LIHLIARSKKESLKD 145 (445)
T ss_pred EEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHH--HHHHHHHHcCCCHHH
Confidence 999999 1 12367999987 46789999999999999999998 44 4556665 5788887652111 3
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEc--CC
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTA--VG 197 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~--~~ 197 (229)
++.+++++|+|+|||++++. ++|+++||++|+|||||+...++.++||||.+||.....+.+++++||+++.++ ++
T Consensus 146 a~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~ 223 (445)
T PRK08525 146 RIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGND 223 (445)
T ss_pred HHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCC
Confidence 45789999999999999985 789999999999999999864468999999999987777778999999999987 34
Q ss_pred cEEE--EeCCCCC-----CccccCCcccccCce
Q 027024 198 GLRS--FENPKNK-----ITAVPAAEEEIWGAT 223 (229)
Q Consensus 198 ~~~~--y~~~~~~-----~~~~~~~d~~~~g~~ 223 (229)
+++. ++....+ +-++.|+||.|.|..
T Consensus 224 ~~~~~~~~~~~~~~c~fe~iY~~rpds~~~g~~ 256 (445)
T PRK08525 224 EFESIQLFEPTPRICAFEYIYFARPDSIVFGKN 256 (445)
T ss_pred ceEEEEecCCCCccceeEeeeecCCCceECCEE
Confidence 5554 3332211 228899999998863
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=5e-37 Score=295.13 Aligned_cols=188 Identities=23% Similarity=0.376 Sum_probs=156.3
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~ 77 (229)
||||+|....+... +.....+..|++.|.|||||+.++|.+++++|||+| .+...+.||+.+.+++++
T Consensus 1 McGI~G~~~~~~~~---------~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~ 71 (628)
T TIGR03108 1 MCGITGIFDLTGQR---------PIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVV 71 (628)
T ss_pred CCEEEEEEECCCCc---------cccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEE
Confidence 99999987432210 012246788999999999999999999999999999 333468999998888999
Q ss_pred EEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCC
Q 027024 78 CLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (229)
Q Consensus 78 lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~ 151 (229)
++|||+|||+.||+++| |+ +.+|+|+ ++++|++|| .+++++|+|+|||++||..+++++++||++
T Consensus 72 lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Ev--i~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~ 142 (628)
T TIGR03108 72 VVFNGEIYNFQELVAELQALGHVFRTRSDTEV--IVHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARDRL 142 (628)
T ss_pred EEECCeECCHHHHHHHHHhcCCccCCCChHHH--HHHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEECCC
Confidence 99999999999999987 44 4455555 589999999 799999999999999999999999999999
Q ss_pred CCccEEEEEeCCCEEEEEechhhhhhhc--------------------------cCccEEeCCCeEEEEcCCc----EEE
Q 027024 152 GKVPLYWGITADGHVAFADDADLLKGAC--------------------------GKSLASFPQGCFFSTAVGG----LRS 201 (229)
Q Consensus 152 G~rPL~y~~~~~~~~~faSe~~aL~~~~--------------------------~~~i~~lpPG~~~~~~~~~----~~~ 201 (229)
|+|||||+...++.++||||+++|...+ .+.|+.|||||++.++.++ .++
T Consensus 143 G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~ 222 (628)
T TIGR03108 143 GIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRC 222 (628)
T ss_pred CCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccc
Confidence 9999999986457899999999986542 1579999999999887442 467
Q ss_pred EeCCC
Q 027024 202 FENPK 206 (229)
Q Consensus 202 y~~~~ 206 (229)
||.+.
T Consensus 223 yw~~~ 227 (628)
T TIGR03108 223 YWDVS 227 (628)
T ss_pred cccCC
Confidence 88864
No 12
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3e-36 Score=280.07 Aligned_cols=208 Identities=14% Similarity=0.135 Sum_probs=164.2
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC----------------------------Cc
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DN 52 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~ 52 (229)
||||||....... ...+-.++.+|+|||+|+.++... ++
T Consensus 11 mCGI~Gi~~~~~~-------------~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~ 77 (484)
T PRK07272 11 ECGVFGIWGHPDA-------------AQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQ 77 (484)
T ss_pred cCeEEEEECCccH-------------HHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCc
Confidence 9999999864221 225668999999999999997651 34
Q ss_pred EEEEEEeC-----CCCCCCCCeEe--eCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-
Q 027024 53 VTLAYTHQ-----NESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (229)
Q Consensus 53 ~~lgh~r~-----~~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~- 118 (229)
++|||+|. ....+.||+.. .+++++++|||+|+|+.+|+++| |+ +.+|+|+ +++++.+++....
T Consensus 78 ~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEV--I~~Li~~~~~~~~~ 155 (484)
T PRK07272 78 AAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEI--LMHLIRRSHNPTFM 155 (484)
T ss_pred EEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHHcCCCHH
Confidence 79999991 22368999976 35789999999999999999998 44 4566665 4788877542111
Q ss_pred CchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCc
Q 027024 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (229)
Q Consensus 119 ~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (229)
+++.+++++|+|+|||++++. ++|+++|||+|+|||||+...++.++||||.+||.....+.+++|+||+++.++.++
T Consensus 156 eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g 233 (484)
T PRK07272 156 GKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEG 233 (484)
T ss_pred HHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCc
Confidence 356789999999999999985 789999999999999999864567999999999988877789999999999998777
Q ss_pred EEEEe--CCCCC------CccccCCcccccCceEE
Q 027024 199 LRSFE--NPKNK------ITAVPAAEEEIWGATFK 225 (229)
Q Consensus 199 ~~~y~--~~~~~------~~~~~~~d~~~~g~~~~ 225 (229)
++.++ .+... .-++.|+||.|.|..|+
T Consensus 234 ~~~~~~~~~~~~~~C~FE~vYfarpds~i~g~~v~ 268 (484)
T PRK07272 234 IQYDSYTTDTQLAICSMEYIYFARPDSTIHGVNVH 268 (484)
T ss_pred eEEEEecCCccccccchhhhhhcCCccccCCEEHH
Confidence 66543 32221 12889999999998764
No 13
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1e-35 Score=276.18 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=161.4
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE-C-------------------------CcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-G-------------------------DNVT 54 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~-------------------------~~~~ 54 (229)
||||||....... ...+-.++.+|+|||+|+.++.. + ++++
T Consensus 19 mCGI~G~~~~~~~-------------~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~g 85 (474)
T PRK06388 19 DCAVVGFKGGINA-------------YSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVG 85 (474)
T ss_pred CCeEEEEECCcch-------------HHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEE
Confidence 9999999853211 23577899999999999999775 1 3479
Q ss_pred EEEEe---C--CCCCCCCCeEe--eCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhh-ccCC-C
Q 027024 55 LAYTH---Q--NESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALR-DRAP-Y 119 (229)
Q Consensus 55 lgh~r---~--~~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g-~~g~-~ 119 (229)
|||+| . ....+.||+.. ..++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+.- ..+. +
T Consensus 86 IGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi--~~li~~~~~~~~~~e 163 (474)
T PRK06388 86 VGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVM--LAELSRNISKYGLKE 163 (474)
T ss_pred EeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHHHhcCCHHH
Confidence 99999 1 22477999973 35789999999999999999998 44 55666664 67774321 1121 3
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.+++|+||+++.++++++
T Consensus 164 ai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~ 240 (474)
T PRK06388 164 GFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGY 240 (474)
T ss_pred HHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCce
Confidence 45789999999999999874 78999999999999999998 5679999999999998887899999999999988887
Q ss_pred EEEeC-CCCCCc-------cccCCcccccCce
Q 027024 200 RSFEN-PKNKIT-------AVPAAEEEIWGAT 223 (229)
Q Consensus 200 ~~y~~-~~~~~~-------~~~~~d~~~~g~~ 223 (229)
+++.. +..+.+ ++.|+||.|.|..
T Consensus 241 ~~~~~~~~~~~~~C~fE~iYfarpds~~~g~~ 272 (474)
T PRK06388 241 KTIFKLDGDKVAHCMFEYVYFSRPDSIIDGIN 272 (474)
T ss_pred EEEEecCCCccccceEEEEeecCCccccCCcH
Confidence 66544 222222 8899999988853
No 14
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-35 Score=274.31 Aligned_cols=205 Identities=16% Similarity=0.158 Sum_probs=162.2
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||....... ....-.++.+|+|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~~-------------~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~ 77 (471)
T PRK06781 11 ECGVFGIWGHENA-------------AQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKS 77 (471)
T ss_pred cCeEEEEEcCccH-------------HHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCE
Confidence 9999998864321 12455799999999999999763 2346
Q ss_pred EEEEEeC-----CCCCCCCCeEe--eCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 027024 54 TLAYTHQ-----NESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (229)
+|||+|. ....+.||+.. .+++++++|||+|+|+++|+++| |+ +.+|+|+ +++++.+++.... +
T Consensus 78 ~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEv--I~~Li~~~~~~~~~e 155 (471)
T PRK06781 78 AIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEV--LLHLIKRSTKDSLIE 155 (471)
T ss_pred EEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHH--HHHHHHHHcCCCHHH
Confidence 8999991 22367899964 35789999999999999999998 43 4556665 4788887652111 4
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|+|||++++. ++++++||++|+|||||+.. ++.++||||.+||.....+.+++|+||+++.++.+++
T Consensus 156 ai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~ 232 (471)
T PRK06781 156 SVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGI 232 (471)
T ss_pred HHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCce
Confidence 56789999999999999985 78999999999999999998 5689999999999988777899999999999987777
Q ss_pred EEEeCCCC-CCc-------cccCCcccccCce
Q 027024 200 RSFENPKN-KIT-------AVPAAEEEIWGAT 223 (229)
Q Consensus 200 ~~y~~~~~-~~~-------~~~~~d~~~~g~~ 223 (229)
+.+..+.. +.+ ++.|+||.|.|..
T Consensus 233 ~~~~~~~~~~~~~C~fE~vYfarpds~~~g~~ 264 (471)
T PRK06781 233 HVDRFTNEVDHAICSMEYIYFARPDSNIAGIN 264 (471)
T ss_pred EEEecCcCcccccceEEEEEecCCCceeCCEE
Confidence 66543221 212 7899999998864
No 15
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.7e-35 Score=274.29 Aligned_cols=169 Identities=21% Similarity=0.347 Sum_probs=144.1
Q ss_pred chHHHHHHHhHhcCCCCccEE-ECCcEEEEEEe---CCCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC-CCC
Q 027024 28 TTSTALVDRFLQTNSSAVSVQ-VGDNVTLAYTH---QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKS 99 (229)
Q Consensus 28 ~~~~~m~~~l~~RGpd~~~~~-~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~ 99 (229)
..+..|++.|+|||||+.++| .+++++|||+| .+.....||+.+.+++++++|||+|||+.+|+++| |+ ..+
T Consensus 16 ~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~ 95 (467)
T TIGR01536 16 EAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQT 95 (467)
T ss_pred HHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCC
Confidence 357789999999999999999 88899999999 34445689999888899999999999999999998 33 233
Q ss_pred CchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhc
Q 027024 100 ANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGAC 179 (229)
Q Consensus 100 d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~ 179 (229)
.+|+++++++|++|| .+++++|+|+|||++||..+++++++||++|+|||||+.. ++.++||||+++|...+
T Consensus 96 ~~D~e~il~~y~~~g-------~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~ 167 (467)
T TIGR01536 96 DSDTEVILHLYEEWG-------EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHP 167 (467)
T ss_pred CCHHHHHHHHHHHHH-------HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhcc
Confidence 444444589999999 7999999999999999999999999999999999999998 68899999999987654
Q ss_pred ---------------------------cCccEEeCCCeEEEEcCCc---EEEEeC
Q 027024 180 ---------------------------GKSLASFPQGCFFSTAVGG---LRSFEN 204 (229)
Q Consensus 180 ---------------------------~~~i~~lpPG~~~~~~~~~---~~~y~~ 204 (229)
.+.|+.||||+++.++.++ .++||.
T Consensus 168 ~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~ 222 (467)
T TIGR01536 168 RNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWE 222 (467)
T ss_pred ccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecC
Confidence 1578999999999887543 345565
No 16
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.8e-35 Score=274.93 Aligned_cols=206 Identities=19% Similarity=0.231 Sum_probs=161.1
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE-C--------------------------CcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-G--------------------------DNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~--------------------------~~~ 53 (229)
||||||....... ...++-.++..|+|||+|+.++.+ + +++
T Consensus 23 mCGI~Gi~~~~~~------------~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i 90 (510)
T PRK07847 23 ECGVFGVWAPGEE------------VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHV 90 (510)
T ss_pred cCeEEEEECCCcC------------HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcE
Confidence 9999999864321 122456799999999999999754 1 246
Q ss_pred EEEEEeC-----CCCCCCCCeEee---CCcEEEEEEEEEccchhHHHHh---CC--------CCCCchHHHHHHHHHHhh
Q 027024 54 TLAYTHQ-----NESPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---GL--------AKSANEVILVIEAYKALR 114 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~~~---~~~~~lv~nG~I~N~~eL~~~l---g~--------~~~d~e~~~~l~~~~~~g 114 (229)
+|||+|. ....+.||+... .++++++|||+|+|+++|+++| |+ +.+|+|+ +++++..++
T Consensus 91 ~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEV--I~~Li~~~~ 168 (510)
T PRK07847 91 AIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDL--VTALLAHGA 168 (510)
T ss_pred EEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHH--HHHHHHHhc
Confidence 9999992 123679999753 5789999999999999999988 42 4455555 578888765
Q ss_pred ccCC--CchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEE
Q 027024 115 DRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFF 192 (229)
Q Consensus 115 ~~g~--~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~ 192 (229)
..+. +++.+++++|+|+|||+++|. ++|+++||++|+|||||++. ++.++||||.+||.....+.|++|+||+++
T Consensus 169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv 245 (510)
T PRK07847 169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELI 245 (510)
T ss_pred cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEE
Confidence 3222 345689999999999999995 78999999999999999998 567999999999988766789999999999
Q ss_pred EEcCCcEEE--EeCCCCC-----CccccCCcccccCce
Q 027024 193 STAVGGLRS--FENPKNK-----ITAVPAAEEEIWGAT 223 (229)
Q Consensus 193 ~~~~~~~~~--y~~~~~~-----~~~~~~~d~~~~g~~ 223 (229)
.++.++++. |+.+..+ +-++.|+||.|.|..
T Consensus 246 ~I~~~gv~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~ 283 (510)
T PRK07847 246 AIDADGLRSTRFAEPTPKGCVFEYVYLARPDTTIAGRS 283 (510)
T ss_pred EEECCceEEEeccCCCCCCCeEEEEEecCCcceeCCeE
Confidence 998777554 5543222 128899999999864
No 17
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.1e-35 Score=273.22 Aligned_cols=207 Identities=16% Similarity=0.180 Sum_probs=160.1
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||....... ...++-.++..|+|||+|+.++.. .+++
T Consensus 33 mCGI~Gi~~~~~~------------~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i 100 (500)
T PRK07349 33 ACGVFGVYAPGEE------------VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDL 100 (500)
T ss_pred CCeEEEEECCCcC------------HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCE
Confidence 9999999863221 123556899999999999999754 1347
Q ss_pred EEEEEeC-----CCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccC-C-
Q 027024 54 TLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRA-P- 118 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g-~- 118 (229)
+|||+|. ....+.||+... .++++++|||+|+|+.+|+++| |+ +.+|+|+ ++++|...-..+ .
T Consensus 101 ~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEV--i~~li~~~~~~~~~~ 178 (500)
T PRK07349 101 AVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEM--IAFAIAQAVDAGKDW 178 (500)
T ss_pred EEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHH--HHHHHHHHHhcCCCH
Confidence 9999992 223679999864 4789999999999999999998 44 5566665 467776532112 1
Q ss_pred -CchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeC---CCEEEEEechhhhhhhccCccEEeCCCeEEEE
Q 027024 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFPQGCFFST 194 (229)
Q Consensus 119 -~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~---~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~ 194 (229)
+++.+++++|+|+|||++++. ++|+++||++|+|||||+... ++.++||||.+||.....+.+++++||+++.+
T Consensus 179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i 256 (500)
T PRK07349 179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWI 256 (500)
T ss_pred HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEE
Confidence 345789999999999999874 789999999999999999862 24799999999998887778999999999999
Q ss_pred cCCcEEEEeC-CCCC-------CccccCCcccccCce
Q 027024 195 AVGGLRSFEN-PKNK-------ITAVPAAEEEIWGAT 223 (229)
Q Consensus 195 ~~~~~~~y~~-~~~~-------~~~~~~~d~~~~g~~ 223 (229)
++++++.+.. +..+ +-++.|+||.|.|..
T Consensus 257 ~~~g~~~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~ 293 (500)
T PRK07349 257 TEGGLSSFHWAQEPQRKLCIFEMIYFARPDSRMHGES 293 (500)
T ss_pred ECCceEEEecccCCCcceeEEEeeeccCCCCccCCeE
Confidence 8777766543 2122 127899999998864
No 18
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=7e-36 Score=246.25 Aligned_cols=172 Identities=18% Similarity=0.259 Sum_probs=135.3
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC----CcEEEEEEe---CCCCCCCCCeEeeC
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----DNVTLAYTH---QNESPLRQRSFAVK 73 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----~~~~lgh~r---~~~~~~~QP~~~~~ 73 (229)
||||++....+... ......+.+|++.|+|||||+++++.. ..+.++|+| .+...+.||+...+
T Consensus 1 MCGI~~~~~~~~~~---------~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~ 71 (181)
T cd03766 1 MCGILCSVSPSGPH---------INSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS 71 (181)
T ss_pred CCcEEEEEeCCCCc---------ccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC
Confidence 99999988532210 001246789999999999999998874 458999999 33346799998877
Q ss_pred CcEEEEEEEEEccchhHHHHhCCCCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCC
Q 027024 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (229)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~ 153 (229)
++++++|||+|||+.+|++ +.+|+|+ ++++|++++.. .+++.+++++|+|+|||++||..+++++++|||+|+
T Consensus 72 ~~~~lv~NGeIyN~~~l~~----s~sDtEv--i~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~ 144 (181)
T cd03766 72 TGNVLQWNGELYNIDGVED----EENDTEV--IFELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGR 144 (181)
T ss_pred CCEEEEECCEEECcccccC----CCCHHHH--HHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCC
Confidence 7899999999999999975 4566665 58999988721 123458999999999999999989999999999999
Q ss_pred ccEEEEEeC-CCEEEEEechhhhhhhccCccEEeCCCeE
Q 027024 154 VPLYWGITA-DGHVAFADDADLLKGACGKSLASFPQGCF 191 (229)
Q Consensus 154 rPL~y~~~~-~~~~~faSe~~aL~~~~~~~i~~lpPG~~ 191 (229)
|||||+... ++.|+|||+..... ...+.++||+-+
T Consensus 145 rPL~y~~~~~~~~l~~aS~~~~~~---~~~~~e~~~~g~ 180 (181)
T cd03766 145 RSLLYKLDPNGFELSISSVSGSSS---GSGFQEVLAGGI 180 (181)
T ss_pred cCcEEEeeCCCCcEEEEEccCCCC---CCceEECCCCcc
Confidence 999999974 57899999975331 225889999543
No 19
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1e-34 Score=267.55 Aligned_cols=200 Identities=18% Similarity=0.218 Sum_probs=157.7
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE--------------------------CCcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--------------------------~~~~~ 54 (229)
||||||....+. ...+-.++..|+|||+|+.++.+ .++++
T Consensus 4 ~CGI~G~~~~~~--------------~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~ 69 (442)
T PRK08341 4 KCGIFAAYSENA--------------PKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLA 69 (442)
T ss_pred ccEEEEEECCCc--------------HHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEE
Confidence 899999985211 23577899999999999999854 25689
Q ss_pred EEEEe---CCCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHH----HHhhccCCC
Q 027024 55 LAYTH---QNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY----KALRDRAPY 119 (229)
Q Consensus 55 lgh~r---~~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~----~~~g~~g~~ 119 (229)
|||+| .....+.||+... ++.++++|||+|+|+.+|+++| |+ +.+|+|++ ++++ .++++ -.+
T Consensus 70 IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI--~~li~~~~~~~~~-~~~ 146 (442)
T PRK08341 70 IGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELI--GISFLWHYSETGD-EFE 146 (442)
T ss_pred EEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHH--HHHHHHHHHhcCC-HHH
Confidence 99999 2334789999754 4689999999999999999998 44 56777765 4443 33331 013
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. + .++||||.+||...+. .+++|+||+++.++++++
T Consensus 147 ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~ 221 (442)
T PRK08341 147 AMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEV 221 (442)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCce
Confidence 55778999999999999985 78999999999999999984 4 4899999999998874 799999999999988877
Q ss_pred EEEeCCCCCC-------ccccCCcccccCc
Q 027024 200 RSFENPKNKI-------TAVPAAEEEIWGA 222 (229)
Q Consensus 200 ~~y~~~~~~~-------~~~~~~d~~~~g~ 222 (229)
+++.....+. -++.|+||.|.|.
T Consensus 222 ~~~~~~~~~~~~C~fe~iYfarpds~~~g~ 251 (442)
T PRK08341 222 ESKVLAREKHHHCVFEYIYFARPDSVIDGV 251 (442)
T ss_pred EEEeeccCCCccceEEEEEecCCccccCCc
Confidence 6643322222 3789999999886
No 20
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-34 Score=269.81 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=160.6
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE-C---------------------------Cc
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-G---------------------------DN 52 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~---------------------------~~ 52 (229)
||||||...... ....+..++.+|+|||+|+.++.+ + ++
T Consensus 21 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~ 87 (479)
T PRK09123 21 ECGVFGILGHPD-------------AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGN 87 (479)
T ss_pred cCeEEEEEcCcc-------------hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCC
Confidence 999999985321 123566799999999999999764 1 34
Q ss_pred EEEEEEe---C--CCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-
Q 027024 53 VTLAYTH---Q--NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (229)
Q Consensus 53 ~~lgh~r---~--~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~- 118 (229)
++|||+| . ....+.||+... +++++++|||+|+|+.+|+++| |+ +.+|+|+ +++++.+++....
T Consensus 88 ~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEv--i~~Li~~~~~~~~~ 165 (479)
T PRK09123 88 RAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEV--ILHLIARSRKASFL 165 (479)
T ss_pred EEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHH--HHHHHHHHccCCHH
Confidence 7999999 1 223789999863 5789999999999999999998 43 4566665 4778876542111
Q ss_pred CchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCc
Q 027024 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (229)
Q Consensus 119 ~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (229)
+++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.+++|+||+++.++.++
T Consensus 166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g 242 (479)
T PRK09123 166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDG 242 (479)
T ss_pred HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCC
Confidence 345789999999999999985 69999999999999999998 578999999999987766779999999999998766
Q ss_pred -EEEEeCCC-CC-------CccccCCcccccCce
Q 027024 199 -LRSFENPK-NK-------ITAVPAAEEEIWGAT 223 (229)
Q Consensus 199 -~~~y~~~~-~~-------~~~~~~~d~~~~g~~ 223 (229)
++++.... .+ .-++.|+||.|.|..
T Consensus 243 ~~~~~~~~~~~~~~~C~FE~VYfarPdS~~~g~~ 276 (479)
T PRK09123 243 SIESIKPFPPQPARFCIFEYVYFARPDSVVGGRS 276 (479)
T ss_pred cEEEEEecCCCCCCCChhheEEecCCCceECCeE
Confidence 76643221 11 127899999999864
No 21
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.6e-34 Score=267.20 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=163.6
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||.....+ ... ...+-.++..|+|||+|+.++.. .+++
T Consensus 14 mCGI~Gi~~~~~-~~~----------~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~ 82 (469)
T PRK05793 14 ECGVFGVFSKNN-IDV----------ASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNS 82 (469)
T ss_pred CCeEEEEEcCCC-ccH----------HHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcE
Confidence 999999986432 111 12455799999999999999763 2357
Q ss_pred EEEEEeC-----CCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 027024 54 TLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (229)
+|||+|. ....+.||+... +++++++|||+|+|+++|+++| |+ +.+|+|++ ++++.+++..+. +
T Consensus 83 ~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi--~~li~~~~~~~~~~ 160 (469)
T PRK05793 83 AIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVI--LNLIARSAKKGLEK 160 (469)
T ss_pred EEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHccCCHHH
Confidence 9999991 223679999864 5789999999999999999998 43 55666664 788877652221 3
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|+||+++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.+++|+||+++.++.+++
T Consensus 161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCce
Confidence 56789999999999999985 78999999999999999998 5789999999999988777899999999999988777
Q ss_pred EEEeCCC-CC-------CccccCCcccccCce
Q 027024 200 RSFENPK-NK-------ITAVPAAEEEIWGAT 223 (229)
Q Consensus 200 ~~y~~~~-~~-------~~~~~~~d~~~~g~~ 223 (229)
+.+..+. .+ +-++.|+||.|.|..
T Consensus 238 ~~~~~~~~~~~~~C~fe~vYfarpds~~~g~~ 269 (469)
T PRK05793 238 KSIKFAEKTKCQTCAFEYIYFARPDSVIDGIS 269 (469)
T ss_pred EEEecCcCccccccEEEEEEeccCCcccCCeE
Confidence 6654322 22 128899999998864
No 22
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=6.3e-34 Score=265.26 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=158.8
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||..... . . ...+-.|+.+|+|||+|+.++.. .+++
T Consensus 1 MCGI~Gi~~~~-~--~----------~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (479)
T PLN02440 1 ECGVVGIFGDP-E--A----------SRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDI 67 (479)
T ss_pred CceEEEEECCc-c--H----------HHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcE
Confidence 99999998531 1 1 23577899999999999999765 3458
Q ss_pred EEEEEeC-----CCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 027024 54 TLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (229)
+|||+|. ....+.||+... +++++++|||+|+|+++|+++| |. +.+|+|+ ++++|.++..... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEv--i~~li~~~~~~~~~~ 145 (479)
T PLN02440 68 AIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEV--LLHLIAISKARPFFS 145 (479)
T ss_pred EEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHH--HHHHHHHhhhhhHHH
Confidence 9999991 224789999853 4679999999999999999998 33 4566665 4678766531111 2
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|+||+++||. ++|+++||++|+|||||+..+++.++||||.+||.....+.|++++||+++.++++++
T Consensus 146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~ 223 (479)
T PLN02440 146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKG 223 (479)
T ss_pred HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCc
Confidence 34789999999999999995 5799999999999999998645689999999999988778899999999999987774
Q ss_pred EEE--eCCCCC-------CccccCCcccccCc
Q 027024 200 RSF--ENPKNK-------ITAVPAAEEEIWGA 222 (229)
Q Consensus 200 ~~y--~~~~~~-------~~~~~~~d~~~~g~ 222 (229)
.+. ..+..+ +-++.|+||.|.|+
T Consensus 224 ~~~~~~~~~~~~~~C~fe~vYf~~p~s~~~g~ 255 (479)
T PLN02440 224 VSSQCLMPHPEPKPCIFEHIYFARPNSIVFGR 255 (479)
T ss_pred EEEeeccCCCCcccceEEEEeecCCCccccCe
Confidence 432 222222 22689999998775
No 23
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-35 Score=263.80 Aligned_cols=192 Identities=24% Similarity=0.397 Sum_probs=169.1
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~ 77 (229)
|||||+....+.|+.. .....++..++.|||||.++..+....-++|.| .+...+.||++..++.++
T Consensus 1 MCGI~Av~~~~~~~~~----------~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~ 70 (543)
T KOG0571|consen 1 MCGILAVLGHEDSEAK----------KPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYV 70 (543)
T ss_pred CCceeeeecccchhhc----------ChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEE
Confidence 9999999985555333 224567888999999999999887777999999 455689999999888888
Q ss_pred EEEEEEEccchhHHHHhC-C---CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCC
Q 027024 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (229)
Q Consensus 78 lv~nG~I~N~~eL~~~lg-~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~ 153 (229)
+..||||||+.+|++.+. + +.+|+|++ +++|.+.|. .++...|+|.|||+++|...+++++|||++|+
T Consensus 71 ~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvI--i~lY~khg~------~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv 142 (543)
T KOG0571|consen 71 VTVNGEIYNHKKLREHCKDFEFQTGSDCEVI--IHLYEKHGG------EQAICMLDGVFAFVLLDTKDDKVVAARDPIGV 142 (543)
T ss_pred EEECceeccHHHHHHHhhhcccccCCCceee--eehHhhcCc------hhHHHHhhhheEEEEecCCCCeEEeccCCcCc
Confidence 899999999999999884 3 78999986 799999852 78999999999999999999999999999999
Q ss_pred ccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEeCCCCCCcc
Q 027024 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITA 211 (229)
Q Consensus 154 rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~~~~ 211 (229)
+|||||++.+++++||||.+.|...|.+ |..|||||++.++.+++.+|+.|.|-...
T Consensus 143 ~~lY~g~~~~gs~~~aSe~k~l~d~C~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~~~ 199 (543)
T KOG0571|consen 143 TPLYYGWDSDGSVYFASEMKCLEDDCEK-IESFPPGHYYTSKTGKLTRYFNPEWFDEN 199 (543)
T ss_pred eeeEEEecCCCcEEEeeehhhhhhhhhc-eeecCCcceeecccccccCCCCchhhhcc
Confidence 9999999988999999999999999975 99999999999999999999999986443
No 24
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=4.4e-33 Score=240.51 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=156.7
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC---------------------------CcEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (229)
|||||....... ...+..|++.|+|||||++++... +.++
T Consensus 1 Cgi~g~~~~~~~-------------~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (252)
T cd00715 1 CGVFGIYGAEDA-------------ARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIA 67 (252)
T ss_pred CEEEEEECCcch-------------HHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEE
Confidence 999999964222 235668999999999999997642 2468
Q ss_pred EEEEeC-----CCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC--C
Q 027024 55 LAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP--Y 119 (229)
Q Consensus 55 lgh~r~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~--~ 119 (229)
|||+|. ....+.||+... +++++++|||+|+|+++|+++| +. +.+|+|+ +++++.++++++. +
T Consensus 68 lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEv--i~~l~~~~~~~~~~~~ 145 (252)
T cd00715 68 IGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEV--ILHLIARSLAKDDLFE 145 (252)
T ss_pred EEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHH--HHHHHHHhhccCCHHH
Confidence 999991 123689999753 4789999999999999999987 33 4556665 4788888874311 3
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|.||++++|. ++|+++||++|.|||||+...++.++||||..+|.....+.|++||||+++.++.+++
T Consensus 146 al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~ 223 (252)
T cd00715 146 AIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGL 223 (252)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCce
Confidence 45689999999999999997 8999999999999999999843789999999999887556799999999999987766
Q ss_pred EEEeCC-CCCCc-------cccCCcccc
Q 027024 200 RSFENP-KNKIT-------AVPAAEEEI 219 (229)
Q Consensus 200 ~~y~~~-~~~~~-------~~~~~d~~~ 219 (229)
..+..+ ..+.+ ++.|+||+|
T Consensus 224 ~~~~~~~~~~~~~c~~e~~y~~~~~~~~ 251 (252)
T cd00715 224 ESSQRAPKPKPAPCIFEYVYFARPDSVI 251 (252)
T ss_pred EEEEecCCCCCCcceEEEEeecCCcccc
Confidence 554222 22222 778999875
No 25
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-33 Score=262.58 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=159.9
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||..... +. ...+..|+..|+|||||+.+++. .+++
T Consensus 1 MCGI~Gi~~~~-~~------------~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (501)
T PRK09246 1 MCGIVGIVGHS-PV------------NQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNM 67 (501)
T ss_pred CceEEEEEcCc-CH------------HHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCE
Confidence 99999998542 11 23566899999999999999876 3578
Q ss_pred EEEEEeC-----CCCCCCCCeEe-eCCcEEEEEEEEEccchhHHHHh----CC---CCCCchHHHHHHHHHHhhcc--C-
Q 027024 54 TLAYTHQ-----NESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY----GL---AKSANEVILVIEAYKALRDR--A- 117 (229)
Q Consensus 54 ~lgh~r~-----~~~~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l----g~---~~~d~e~~~~l~~~~~~g~~--g- 117 (229)
+|||+|. ....+.||+.. ...+++++|||+|+|+++|+++| +. +.+|+|++ ++++.++... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi--~~li~~~l~~~~g~ 145 (501)
T PRK09246 68 GIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVL--LNVFAHELQKFRGL 145 (501)
T ss_pred EEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHH--HHHHHHHHHhcccc
Confidence 9999991 22478999973 34569999999999999999988 22 56667764 6777765311 1
Q ss_pred -------CCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeC---CCEEEEEechhhhhhhccCccEEeC
Q 027024 118 -------PYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFP 187 (229)
Q Consensus 118 -------~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~---~~~~~faSe~~aL~~~~~~~i~~lp 187 (229)
.+++.+++++|+|+||++++.. .++|+++||++|+|||||+... ++.++||||.+||.....+.|++|+
T Consensus 146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~ 224 (501)
T PRK09246 146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVA 224 (501)
T ss_pred ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeC
Confidence 1245688999999999997743 4579999999999999999873 3479999999999998878899999
Q ss_pred CCeEEEEcCCc-EEEE--eC-CCCC-----CccccCCcccccCce-EE
Q 027024 188 QGCFFSTAVGG-LRSF--EN-PKNK-----ITAVPAAEEEIWGAT-FK 225 (229)
Q Consensus 188 PG~~~~~~~~~-~~~y--~~-~~~~-----~~~~~~~d~~~~g~~-~~ 225 (229)
||+++.+++++ .... .. +.+. .-++.|+||.|.|.. |.
T Consensus 225 PGeiv~i~~~g~~~~~~~~~~~~~~~c~fe~vY~~r~ds~i~g~~vy~ 272 (501)
T PRK09246 225 PGEAIYITEDGQLHTRQCAENPKLNPCIFEYVYFARPDSIIDGISVYK 272 (501)
T ss_pred CCeEEEEECCCcEehhhhcCCCCCcceEEEEEEcCCchhhccCeeHHh
Confidence 99999998766 3321 11 1112 127799999999986 53
No 26
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=100.00 E-value=1.1e-32 Score=254.93 Aligned_cols=205 Identities=18% Similarity=0.147 Sum_probs=160.3
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (229)
|||||.....+. ....+..++..|+|||+|++++.. .++++
T Consensus 1 CGI~Gi~~~~~~------------~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~ 68 (442)
T TIGR01134 1 CGVVGIYSQEED------------AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVG 68 (442)
T ss_pred CEEEEEEcCCcc------------HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEE
Confidence 999998754321 123566899999999999999864 24689
Q ss_pred EEEEeC-----CCCCCCCCeEe-eCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhcc-CC--C
Q 027024 55 LAYTHQ-----NESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDR-AP--Y 119 (229)
Q Consensus 55 lgh~r~-----~~~~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~-g~--~ 119 (229)
|||+|. ....+.||+.. ..++++++|||+|+|+++|+++| |. +.+|+|+ ++++|.+++.. .. +
T Consensus 69 IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEv--i~~li~~~~~~~~~~~~ 146 (442)
T TIGR01134 69 IGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEV--LLHLLARERLEEDDLFE 146 (442)
T ss_pred EEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHH--HHHHHHHhhcccCCHHH
Confidence 999991 12368999974 33569999999999999999998 33 4566665 47888876521 11 3
Q ss_pred chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
++.+++++|+|.|||+++| .++|+++||++|.|||||+.. ++.++||||.+||.....+.|++|+||+++.++++++
T Consensus 147 ai~~~~~~l~G~falvi~~--~~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~ 223 (442)
T TIGR01134 147 AIARVLKRVRGAYALVIMI--GDGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGL 223 (442)
T ss_pred HHHHHHHHhCccceEEEEE--CCEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcE
Confidence 5578999999999999997 479999999999999999998 5789999999999876667899999999999988877
Q ss_pred EEEeCCCCCCc-------cccCCcccccCce
Q 027024 200 RSFENPKNKIT-------AVPAAEEEIWGAT 223 (229)
Q Consensus 200 ~~y~~~~~~~~-------~~~~~d~~~~g~~ 223 (229)
+++.....+.+ ++.|+||.|.|..
T Consensus 224 ~~~~~~~~~~~~c~fe~vYfarpds~~~g~~ 254 (442)
T TIGR01134 224 ESRLFANTPRAPCIFEYVYFARPDSVIDGIS 254 (442)
T ss_pred EEEeccCCCCcceEEEEEEecCCcceECCeE
Confidence 66433222222 7899999998863
No 27
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=1.6e-32 Score=231.98 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=140.0
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC---------------------------CcEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (229)
|||+|....... ...+..|+..|+|||||+++++.. +.++
T Consensus 1 CGI~G~~~~~~~-------------~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (215)
T cd00714 1 CGIVGYIGKREA-------------VDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVG 67 (215)
T ss_pred CEEEEEEcCccH-------------HHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEE
Confidence 999998853211 235678999999999999998863 4589
Q ss_pred EEEEeC---C--CCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC---Cc
Q 027024 55 LAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (229)
Q Consensus 55 lgh~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~---~~ 120 (229)
|||+|. . ...+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.+++..+. ++
T Consensus 68 igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi--~~l~~~~~~~~~~~~~a 145 (215)
T cd00714 68 IGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVI--AHLIEYYYDGGLDLLEA 145 (215)
T ss_pred EEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 999991 2 135799998766789999999999999999998 44 56666664 788888764332 34
Q ss_pred hhhhhcccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEE
Q 027024 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFS 193 (229)
Q Consensus 121 ~~~~l~~L~G~fa~~i~d~~~-~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~ 193 (229)
+.++++.|+|+|||++||... ++|+++|| .|||||+.. ++.++||||.+||..++.+ +..|.+|+++.
T Consensus 146 i~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~~~~~~~~~ 214 (215)
T cd00714 146 VKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRR-VIYLEDGDIAV 214 (215)
T ss_pred HHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCCEEe
Confidence 568999999999999999876 49999999 499999997 5789999999999999864 88999998875
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=6.2e-32 Score=258.89 Aligned_cols=183 Identities=17% Similarity=0.221 Sum_probs=149.8
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (229)
||||||...... ....+..|+..|+|||||+.+++. .+++
T Consensus 1 MCGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~ 67 (604)
T PRK00331 1 MCGIVGYVGQRN-------------AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTT 67 (604)
T ss_pred CcEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcE
Confidence 999999985321 123567899999999999999876 3468
Q ss_pred EEEEEeC---C--CCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC---C
Q 027024 54 TLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (229)
Q Consensus 54 ~lgh~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~---~ 119 (229)
+|||+|. . ...+.||+.+.+++++++|||+|||+++|+++| |+ +.+|+|+ ++++|.++.+.|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEv--i~~l~~~~~~~g~~~~~ 145 (604)
T PRK00331 68 GIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEV--IAHLIEEELKEGGDLLE 145 (604)
T ss_pred EEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHH--HHHHHHHHHhhCCCHHH
Confidence 9999992 2 236899998777889999999999999999998 44 4566665 4788887743332 3
Q ss_pred chhhhhcccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCc
Q 027024 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~-~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (229)
++.+++++|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|...+. .+++|+||+++.+++++
T Consensus 146 a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~i~~~~ 220 (604)
T PRK00331 146 AVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIAVLTRDG 220 (604)
T ss_pred HHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEEEEECCe
Confidence 5678999999999999999886 899999995 99999997 578999999999999875 58999999999998777
Q ss_pred EEEEe
Q 027024 199 LRSFE 203 (229)
Q Consensus 199 ~~~y~ 203 (229)
++.+.
T Consensus 221 ~~~~~ 225 (604)
T PRK00331 221 VEIFD 225 (604)
T ss_pred EEEEe
Confidence 76664
No 29
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.97 E-value=9.1e-31 Score=250.94 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=148.6
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE---------------------------CCcEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (229)
|||+|....... ...+..|+..|+|||||+.+++. .+.++
T Consensus 1 CGI~g~~~~~~~-------------~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (607)
T TIGR01135 1 CGIVGYIGQRDA-------------VPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVG 67 (607)
T ss_pred CeEEEEECCccH-------------HHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEE
Confidence 999999853221 13567899999999999999876 34579
Q ss_pred EEEEeC---C--CCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC---Cc
Q 027024 55 LAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (229)
Q Consensus 55 lgh~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~---~~ 120 (229)
|||+|. . ...+.||+...+++++++|||+|||+++|+++| |+ +.+|+|+ ++++|.++++.+. ++
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEv--i~~l~~~~~~~~~~~~~a 145 (607)
T TIGR01135 68 IGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEV--IAHLIEEYLREGGDLLEA 145 (607)
T ss_pred EEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHH--HHHHHHHHHhcCCCHHHH
Confidence 999991 2 236899998777889999999999999999998 44 4566665 4788988874332 35
Q ss_pred hhhhhcccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcE
Q 027024 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (229)
Q Consensus 121 ~~~~l~~L~G~fa~~i~d~~~-~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (229)
+.+++++|+|+|||++||... ++|+++||+ |||||+.. ++.++||||.++|...+. .+.+|+||+++.++++++
T Consensus 146 i~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~~~~~~~ 220 (607)
T TIGR01135 146 VQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIAILTRDGV 220 (607)
T ss_pred HHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEEEEECCee
Confidence 668999999999999999875 569999994 99999997 678999999999998875 588999999999987777
Q ss_pred EEEeC
Q 027024 200 RSFEN 204 (229)
Q Consensus 200 ~~y~~ 204 (229)
+.+..
T Consensus 221 ~~~~~ 225 (607)
T TIGR01135 221 RIYNF 225 (607)
T ss_pred EEEeC
Confidence 76653
No 30
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.97 E-value=1e-30 Score=225.48 Aligned_cols=175 Identities=18% Similarity=0.135 Sum_probs=136.8
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCC-CCccEEEC------------------------------
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNS-SAVSVQVG------------------------------ 50 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGp-d~~~~~~~------------------------------ 50 (229)
|||||......+. .....+..|+.+|+|||+ |+.++++.
T Consensus 1 CGI~G~~~~~~~~----------~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~ 70 (249)
T cd01907 1 CGIFGIMSKDGEP----------FVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRY 70 (249)
T ss_pred CcEEEEEecCCcc----------ccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhc
Confidence 9999998643210 123467899999999999 99998762
Q ss_pred ------CcEEEEEEeC-----CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHh
Q 027024 51 ------DNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKAL 113 (229)
Q Consensus 51 ------~~~~lgh~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~ 113 (229)
++++|||+|. ....+.||+.. ++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++...
T Consensus 71 ~~~~~~~~~~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi--~~ll~~~ 146 (249)
T cd01907 71 DLEEYKGYHWIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVI--AYYLDLL 146 (249)
T ss_pred CchheEEEEEEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHH
Confidence 4589999992 12358999976 489999999999999999988 43 56667764 5666532
Q ss_pred hcc-CC--C-------------------chhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEec
Q 027024 114 RDR-AP--Y-------------------PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (229)
Q Consensus 114 g~~-g~--~-------------------~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe 171 (229)
-.. +. + ++..+++.|+|+|||++++. +.++++|||+|.|||||+.. ++.++||||
T Consensus 147 ~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE 223 (249)
T cd01907 147 LRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASE 223 (249)
T ss_pred HHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEc
Confidence 111 11 0 22368899999999999985 67999999999999999998 678999999
Q ss_pred hhhhhhhc---cCccEEeCCCeEEE
Q 027024 172 ADLLKGAC---GKSLASFPQGCFFS 193 (229)
Q Consensus 172 ~~aL~~~~---~~~i~~lpPG~~~~ 193 (229)
.+||...+ .+.+.+++||+++.
T Consensus 224 ~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 224 ECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred HHHHhccCccchheEecCCCCceEe
Confidence 99999875 56789999999875
No 31
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.8e-30 Score=248.90 Aligned_cols=183 Identities=15% Similarity=0.224 Sum_probs=146.5
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE-C-----------------------------
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-G----------------------------- 50 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~----------------------------- 50 (229)
||||||....... ...+..++.+|+|||+|+.++.. +
T Consensus 24 MCGI~G~~~~~~~-------------~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~ 90 (640)
T PTZ00295 24 CCGIVGYLGNEDA-------------SKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLD 90 (640)
T ss_pred CCeEEEEEcCcch-------------HHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhc
Confidence 9999999864321 23567899999999999999765 1
Q ss_pred ----CcEEEEEEeC-----CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhc
Q 027024 51 ----DNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD 115 (229)
Q Consensus 51 ----~~~~lgh~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~ 115 (229)
++++|||+|. ....+.||+...+++++++|||+|+|+++|+++| |+ +.+|+|++ ++++...-+
T Consensus 91 ~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi--~~li~~~~~ 168 (640)
T PTZ00295 91 SHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVI--ANLIGLELD 168 (640)
T ss_pred CCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHH--HHHHHHHHh
Confidence 1359999991 2246799998766889999999999999999998 44 56666664 677653211
Q ss_pred cCC---CchhhhhcccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeE
Q 027024 116 RAP---YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCF 191 (229)
Q Consensus 116 ~g~---~~~~~~l~~L~G~fa~~i~d~~-~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~ 191 (229)
.|. +++.+++++|+|.|||+++|.. .++|+++||+ |||||+.. ++.++||||.+||...+.+ +..++||++
T Consensus 169 ~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei 243 (640)
T PTZ00295 169 QGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEI 243 (640)
T ss_pred cCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeE
Confidence 121 3557899999999999999976 5899999996 99999997 5679999999999988875 668999999
Q ss_pred EEEcCCcEEEEe
Q 027024 192 FSTAVGGLRSFE 203 (229)
Q Consensus 192 ~~~~~~~~~~y~ 203 (229)
+.+++++++.|.
T Consensus 244 ~~i~~~~~~~~~ 255 (640)
T PTZ00295 244 AELSLENVNDLY 255 (640)
T ss_pred EEEECCeEEEEe
Confidence 999888888776
No 32
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=9.8e-30 Score=213.20 Aligned_cols=180 Identities=24% Similarity=0.352 Sum_probs=143.9
Q ss_pred eeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECC---------------------------cEE
Q 027024 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGD---------------------------NVT 54 (229)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~---------------------------~~~ 54 (229)
||||+.....+...... .....|+..+.+||||+++++..+ .++
T Consensus 1 Cgi~g~~~~~~~~~~~~---------~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (220)
T cd00352 1 CGIFGIVGADGAASLLL---------LLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVA 71 (220)
T ss_pred CEEEEEECCCCcchhhH---------HHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEE
Confidence 99999997654321110 011579999999999999987643 689
Q ss_pred EEEEeC-----CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHhC---C---CCCCchHHHHHHHHHHhhccCC--Cch
Q 027024 55 LAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAP--YPP 121 (229)
Q Consensus 55 lgh~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~---~~~d~e~~~~l~~~~~~g~~g~--~~~ 121 (229)
|||+|. ....+.||+....++++++|||+|+|+++|++++. . ..+|+|+ ++++|.++++.+. +++
T Consensus 72 i~H~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~--i~~~~~~~~~~~~~~~~~ 149 (220)
T cd00352 72 LGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEV--ILHLLERLGREGGLFEAV 149 (220)
T ss_pred EEEeEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHH--HHHHHHHHhccCCHHHHH
Confidence 999991 13578999987556899999999999999998873 2 4555565 5788988874322 345
Q ss_pred hhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEE
Q 027024 122 NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFF 192 (229)
Q Consensus 122 ~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~ 192 (229)
.++++.++|.|+|+++|..+++++++||++|.|||||+...++.++||||..++...+.+.+.++|||+++
T Consensus 150 ~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 150 EDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred HHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 78999999999999999888999999999999999999983478999999999998876679999999864
No 33
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.97 E-value=7.1e-30 Score=212.81 Aligned_cols=122 Identities=23% Similarity=0.281 Sum_probs=102.7
Q ss_pred CcEEEEEEEEEccchhHHHHh---CC-CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEc
Q 027024 74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASD 149 (229)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~l---g~-~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD 149 (229)
+++++++||||||+.+|+++| +. ..+.+|+++++++|++|| .+++++|+|+|||++||.+ ++|++|||
T Consensus 50 ~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~laRD 121 (199)
T cd01909 50 ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTLATD 121 (199)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEEEEC
Confidence 579999999999999999998 32 334444444589999999 7899999999999999998 99999999
Q ss_pred CCCCccEEEEEeCCCEEEEEechhhhhhhcc-----------------CccEEeCCCeEEEEcCC-----c--EEEEeCC
Q 027024 150 QFGKVPLYWGITADGHVAFADDADLLKGACG-----------------KSLASFPQGCFFSTAVG-----G--LRSFENP 205 (229)
Q Consensus 150 ~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~-----------------~~i~~lpPG~~~~~~~~-----~--~~~y~~~ 205 (229)
|+|+|||||... +.++||||+++|.+++. +.|++|||||++.++.+ + ..+||.|
T Consensus 122 r~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~p 199 (199)
T cd01909 122 HAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWTP 199 (199)
T ss_pred CCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeecC
Confidence 999999999886 67999999999976522 46999999999876533 1 5678876
No 34
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.2e-29 Score=227.67 Aligned_cols=208 Identities=20% Similarity=0.195 Sum_probs=161.1
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE-CC---------------------------c
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-GD---------------------------N 52 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~~---------------------------~ 52 (229)
||||||-+..+. +.+ .+..-..+-.|+|||.++.++.. ++ +
T Consensus 4 ~CGV~Gi~~~~~-~~a----------~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~ 72 (470)
T COG0034 4 MCGVFGIWGHKD-NNA----------AQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGN 72 (470)
T ss_pred cceEEEEecCCc-cch----------HHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCc
Confidence 999999997543 111 23567899999999999988754 22 3
Q ss_pred EEEEEEe-----CCCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhcc-CC
Q 027024 53 VTLAYTH-----QNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDR-AP 118 (229)
Q Consensus 53 ~~lgh~r-----~~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~-g~ 118 (229)
++|||+| .....+.||++.. .+.++++|||.|.|..+|+++| |. +.+|+|++ ++++.+...+ +.
T Consensus 73 ~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvl--l~l~a~~~~~~~~ 150 (470)
T COG0034 73 VGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVL--LHLLARELDEDDI 150 (470)
T ss_pred ceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHH--HHHHHhhcccccH
Confidence 4899999 2234788999864 3469999999999999999999 44 56777775 6888754321 11
Q ss_pred -CchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEc--
Q 027024 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTA-- 195 (229)
Q Consensus 119 -~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~-- 195 (229)
+++.++++.++|.||+++... +.|+++|||.|+|||.+|...||.++||||.+||.....+.+++++||+.+.++
T Consensus 151 ~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~ 228 (470)
T COG0034 151 FEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITID 228 (470)
T ss_pred HHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEec
Confidence 356788999999999999975 599999999999999999985566999999999999999999999999998843
Q ss_pred CCcEEEE--eCCCC-C-----CccccCCcccccCce
Q 027024 196 VGGLRSF--ENPKN-K-----ITAVPAAEEEIWGAT 223 (229)
Q Consensus 196 ~~~~~~y--~~~~~-~-----~~~~~~~d~~~~g~~ 223 (229)
+.++.+. ..+.. + +-++.|+||-|.|.-
T Consensus 229 ~~g~~s~~~~~~~~~~~C~fEyVYFARPDS~Idg~s 264 (470)
T COG0034 229 GDGLESKQVAEPPRRAPCSFEYVYFARPDSVIDGIS 264 (470)
T ss_pred CceeEEEeccCCCCCccceEEEEEeecCccccCCee
Confidence 3335543 33322 1 238899999998853
No 35
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.96 E-value=7.8e-28 Score=212.49 Aligned_cols=212 Identities=18% Similarity=0.259 Sum_probs=159.8
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECC----------------------------c
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGD----------------------------N 52 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~----------------------------~ 52 (229)
||||||-..+.+-.-+. .+....-.|+|||.++.++...+ +
T Consensus 1 eCGv~Gi~~a~~~~~l~-----------~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~ 69 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASRLP-----------ELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGS 69 (474)
T ss_pred CCcEEEEEecCccccCc-----------HHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccc
Confidence 99999998765442221 23333468999999998865422 2
Q ss_pred EEEEEEe-----CCCCCCCCCeEee--CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHH--H-hhcc
Q 027024 53 VTLAYTH-----QNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYK--A-LRDR 116 (229)
Q Consensus 53 ~~lgh~r-----~~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~--~-~g~~ 116 (229)
.+|||+| .....+.|||+.. .+.++++|||++.|+++||+++ |+ +.+|+|+++.+-++. . ++.+
T Consensus 70 ~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~ 149 (474)
T KOG0572|consen 70 IGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVD 149 (474)
T ss_pred eeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhccc
Confidence 7999999 2334789999854 4669999999999999999998 33 677888764333332 1 1112
Q ss_pred CC---CchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCC--C--EEEEEechhhhhhhccCccEEeCCC
Q 027024 117 AP---YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITAD--G--HVAFADDADLLKGACGKSLASFPQG 189 (229)
Q Consensus 117 g~---~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~--~--~~~faSe~~aL~~~~~~~i~~lpPG 189 (229)
++ ..++.++..++|.||+++... ++|++.|||+|.|||+.|+..+ + .+++|||.++|....++..+++.||
T Consensus 150 ~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PG 227 (474)
T KOG0572|consen 150 APDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPG 227 (474)
T ss_pred CccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCc
Confidence 22 356889999999999999875 6799999999999999998632 2 7999999999999988889999999
Q ss_pred eEEEEcCCcEEEEeC---CCCC--------CccccCCcccccCceEE
Q 027024 190 CFFSTAVGGLRSFEN---PKNK--------ITAVPAAEEEIWGATFK 225 (229)
Q Consensus 190 ~~~~~~~~~~~~y~~---~~~~--------~~~~~~~d~~~~g~~~~ 225 (229)
+++.+++++.++-|- |..+ +-++.|+||++.|++-+
T Consensus 228 EiV~i~r~g~~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY 274 (474)
T KOG0572|consen 228 EIVEISRNGVKSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVY 274 (474)
T ss_pred eEEEEecCCceeeeeecCCccccccceeeeEEEeccCCceecccchH
Confidence 999998776554433 3221 22889999999998644
No 36
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.95 E-value=2.6e-27 Score=229.32 Aligned_cols=189 Identities=17% Similarity=0.259 Sum_probs=145.7
Q ss_pred CeeEeeccccC-CchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEE--C---------------------------
Q 027024 1 MLGVFSSAIVS-PPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G--------------------------- 50 (229)
Q Consensus 1 m~gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--~--------------------------- 50 (229)
||||||..... ++... .....+-.-+.+|+|||.|+.++.+ +
T Consensus 1 mCGI~g~~~~~~~~~~~--------~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~ 72 (680)
T PLN02981 1 MCGIFAYLNYNVPRERR--------FILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEE 72 (680)
T ss_pred CceEEEEEccCCccccc--------cHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhh
Confidence 99999998532 11000 0124677899999999999998765 1
Q ss_pred -------------CcEEEEEEe---C--CCCCCCCCeEee-CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHH
Q 027024 51 -------------DNVTLAYTH---Q--NESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVIL 105 (229)
Q Consensus 51 -------------~~~~lgh~r---~--~~~~~~QP~~~~-~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~ 105 (229)
++++|||+| . ....+.||+... .+.++++|||+|+|+.+|+++| |+ +.+|+|++
T Consensus 73 ~~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi- 151 (680)
T PLN02981 73 VAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVI- 151 (680)
T ss_pred ccccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHH-
Confidence 237999999 1 224678999764 3679999999999999999998 54 56666664
Q ss_pred HHHH----HHHhhcc-C--C--CchhhhhcccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeC--C----------
Q 027024 106 VIEA----YKALRDR-A--P--YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITA--D---------- 163 (229)
Q Consensus 106 ~l~~----~~~~g~~-g--~--~~~~~~l~~L~G~fa~~i~d~~-~~~l~~aRD~~G~rPL~y~~~~--~---------- 163 (229)
+++ |+.+|.. + . +++.+++++|+|+|||++++.. .++++++||+ |||++|..+ +
T Consensus 152 -~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~ 227 (680)
T PLN02981 152 -PKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTS 227 (680)
T ss_pred -HHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccccccccc
Confidence 566 5555421 1 1 3556899999999999999966 4899999995 999999972 1
Q ss_pred -----------CEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEe
Q 027024 164 -----------GHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFE 203 (229)
Q Consensus 164 -----------~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~ 203 (229)
+.++||||.+||... .+.++.|+||+++.+++++++.|.
T Consensus 228 ~~~~~~~~~~~~~~~~aSe~~al~~~-~~~~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 228 EGFLTKNRDKPKEFFLASDASAVVEH-TKRVLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred ccccccccccCCcEEEEeCHHHHHHh-cCEEEEECCCeEEEEECCeEEEEe
Confidence 369999999999998 456999999999999888877765
No 37
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.95 E-value=7.1e-28 Score=187.15 Aligned_cols=110 Identities=29% Similarity=0.507 Sum_probs=70.3
Q ss_pred CCCCCCCCeE-eeCCcEEEEEEEEEccchhHHHHhC---C-CCCCchHHHHHHHHHH---hhccCCCchhhhhcccccce
Q 027024 61 NESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKA---LRDRAPYPPNHVVGHLSGYF 132 (229)
Q Consensus 61 ~~~~~~QP~~-~~~~~~~lv~nG~I~N~~eL~~~lg---~-~~~d~e~~~~l~~~~~---~g~~g~~~~~~~l~~L~G~f 132 (229)
....+.||+. +.+++++++|||+|||+++|+++|. . ..+.+|.++++++|++ || .+++++|+|.|
T Consensus 8 ~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~-------~~~~~~l~G~f 80 (125)
T PF13537_consen 8 DSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG-------EDFLKRLDGPF 80 (125)
T ss_dssp -----------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG-------GGGGGT--EEE
T ss_pred cccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH-------HHHHHhCCceE
Confidence 3457899998 5778899999999999999999983 2 2344455545788887 77 89999999999
Q ss_pred eEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhh
Q 027024 133 AFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (229)
Q Consensus 133 a~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~ 177 (229)
||++||+.+++++++||++|+|||||+..+++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999998999999999999999999994359999999999864
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=5.5e-27 Score=226.56 Aligned_cols=190 Identities=17% Similarity=0.186 Sum_probs=144.9
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC------------------------------
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG------------------------------ 50 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~------------------------------ 50 (229)
||||||+...+.+.... .-...+..-+++|+|||.|+.++...
T Consensus 1 mCGI~g~~~~~~~~~~~-------~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~ 73 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVE-------QILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNIS 73 (670)
T ss_pred CceEEEEECCCCccccc-------cHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHH
Confidence 99999998654211000 01236778999999999998776542
Q ss_pred -----------------------CcEEEEEEe---C--CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---
Q 027024 51 -----------------------DNVTLAYTH---Q--NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (229)
Q Consensus 51 -----------------------~~~~lgh~r---~--~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~--- 96 (229)
++++|||+| . ....+.||+.+.+++++++|||+|||+.+||++| |+
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~ 153 (670)
T PTZ00394 74 QLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFS 153 (670)
T ss_pred HHHHHHhcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEec
Confidence 136999999 2 2246789998877889999999999999999998 54
Q ss_pred CCCCchHHHHHHH----HHHhhccCC-CchhhhhcccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeCC-------
Q 027024 97 AKSANEVILVIEA----YKALRDRAP-YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITAD------- 163 (229)
Q Consensus 97 ~~~d~e~~~~l~~----~~~~g~~g~-~~~~~~l~~L~G~fa~~i~d~~-~~~l~~aRD~~G~rPL~y~~~~~------- 163 (229)
+.+|+|++ +++ |+.+|.... +++.+++++|+|+|||++.+.. .++|+++||+ +||++|...+
T Consensus 154 s~tDtEvi--~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~ 228 (670)
T PTZ00394 154 SDTDTEVI--SVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVM 228 (670)
T ss_pred CCChHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEecccccccccc
Confidence 56677765 544 444441011 3567899999999999998643 5899999997 9999999731
Q ss_pred -------------CEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEEEEe
Q 027024 164 -------------GHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFE 203 (229)
Q Consensus 164 -------------~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~ 203 (229)
+.++|||+..||...+. .+..|++|+++.+++++++-|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~-~~~~l~dg~~~~~~~~~~~~~~ 280 (670)
T PTZ00394 229 KLQTYDLTDLSGPLEVFFSSDVNSFAEYTR-EVVFLEDGDIAHYCDGALRFYN 280 (670)
T ss_pred ccccccccccCCCCcEEEEeChHHHHHhhc-eEEEecCCeEEEEECCEEEEEe
Confidence 47999999999999986 4899999999999877655544
No 39
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=4.6e-25 Score=207.13 Aligned_cols=181 Identities=17% Similarity=0.240 Sum_probs=148.5
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEEC---------------------------CcE
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNV 53 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~ 53 (229)
||||+|+...+++.. ..+.+-+++|.+||.|+.++.+. +.+
T Consensus 1 MCGIvG~i~~~~~~~------------~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~ 68 (597)
T COG0449 1 MCGIVGYIGFLREAI------------DILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGV 68 (597)
T ss_pred CCcEEEEEcCCccHH------------HHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCce
Confidence 999999997666522 25788999999999999987642 137
Q ss_pred EEEEEe-----CCCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHhhccCC-Cch
Q 027024 54 TLAYTH-----QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-YPP 121 (229)
Q Consensus 54 ~lgh~r-----~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~~~ 121 (229)
+||||| .+...+++|+.+ +++++||||.|.|+.+|+++| |+ +++|||+ +.|++.+.-+.+. +++
T Consensus 69 gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEV--i~hLi~~~~~~~~~~a~ 144 (597)
T COG0449 69 GIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEV--IAHLLEEIYDTSLLEAV 144 (597)
T ss_pred eeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHH--HHHHHHHHHHhHHHHHH
Confidence 999999 345688999965 889999999999999999999 56 5555555 4777764422111 456
Q ss_pred hhhhcccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccEEeCCCeEEEEcCCcEE
Q 027024 122 NHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLR 200 (229)
Q Consensus 122 ~~~l~~L~G~fa~~i~d~~~-~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~ 200 (229)
..++++|+|+||+++.|... ++|++||. -.||+.|.. ++..++||+..|++..+.+ +..|.+|++..++++++.
T Consensus 145 ~~~l~~l~Gsyal~~~~~~~p~~i~~ar~---~sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 145 KKVLKRLEGSYALLCTHSDFPDELVAARK---GSPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred HHHHHHhcceeEEEEEecCCCCeEEEEcC---CCCeEEEec-CCcceEecChhhhhhhhce-EEEeCCCCEEEEECCcEE
Confidence 78999999999999999885 89999998 499999998 6889999999999999875 889999999999888877
Q ss_pred EEe
Q 027024 201 SFE 203 (229)
Q Consensus 201 ~y~ 203 (229)
+.
T Consensus 220 -~~ 221 (597)
T COG0449 220 -IN 221 (597)
T ss_pred -Ee
Confidence 44
No 40
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.92 E-value=1.7e-24 Score=170.12 Aligned_cols=120 Identities=26% Similarity=0.413 Sum_probs=101.4
Q ss_pred CCCccE--EECCcEEEEEEe----C-CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHhC---C---CCCCchHHHHHH
Q 027024 42 SSAVSV--QVGDNVTLAYTH----Q-NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIE 108 (229)
Q Consensus 42 pd~~~~--~~~~~~~lgh~r----~-~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~---~~~d~e~~~~l~ 108 (229)
||..++ +..+.++|||+| . ....+.||+...+++++++|||+|+|+.+|+++++ + +.+|+|++ ++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii--~~ 78 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEII--AA 78 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHH--HH
Confidence 566666 678889999999 1 21344599966678899999999999999999883 3 45666664 67
Q ss_pred HHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEec
Q 027024 109 AYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (229)
Q Consensus 109 ~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe 171 (229)
+++++| .++++.++|.|++++++...++++++||+.|.|||||+.. ++.++||||
T Consensus 79 li~~~g-------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 79 LIHRWG-------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHH-------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 888888 7889999999999999988899999999999999999998 688999998
No 41
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.77 E-value=5.3e-18 Score=146.51 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=99.4
Q ss_pred EEEEEEe----CC-C-CCCCCCeEeeCCcEEEEEEEEEccch-----hHHHHh---C--C--CCCCchHHHHHHHHHHhh
Q 027024 53 VTLAYTH----QN-E-SPLRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---G--L--AKSANEVILVIEAYKALR 114 (229)
Q Consensus 53 ~~lgh~r----~~-~-~~~~QP~~~~~~~~~lv~nG~I~N~~-----eL~~~l---g--~--~~~d~e~~~~l~~~~~~g 114 (229)
++|||+| .. . ..+.||+.. ++++++|||.|.|++ +|+++| + . ..+|+|++ ++++.+..
T Consensus 84 ~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i--~~li~~~~ 159 (251)
T TIGR03442 84 CVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHL--FALLLNRL 159 (251)
T ss_pred eEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHH--HHHHHHHH
Confidence 6999999 21 2 368999974 789999999999997 565555 2 1 56777765 34444332
Q ss_pred -ccCC----Cchhhhhcccccc-------eeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccC-
Q 027024 115 -DRAP----YPPNHVVGHLSGY-------FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK- 181 (229)
Q Consensus 115 -~~g~----~~~~~~l~~L~G~-------fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~- 181 (229)
+..+ +.+.++++.|.|. |+|++.|. ++|++.||+. ||||+.. ++.++||||. | ...
T Consensus 160 ~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l---~~~~ 228 (251)
T TIGR03442 160 LENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--Y---DDDP 228 (251)
T ss_pred hhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--c---CCCC
Confidence 2111 2355677778887 99999984 7999999975 9999997 4679999998 2 233
Q ss_pred ccEEeCCCeEEEEcCCcEEE
Q 027024 182 SLASFPQGCFFSTAVGGLRS 201 (229)
Q Consensus 182 ~i~~lpPG~~~~~~~~~~~~ 201 (229)
.|+++|||+++++++++++.
T Consensus 229 ~W~~v~pge~v~i~~~~v~~ 248 (251)
T TIGR03442 229 GWQDVPDRHLLSVSEDDVTI 248 (251)
T ss_pred CceEeCCCeEEEEECCcEEE
Confidence 79999999999998776543
No 42
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.76 E-value=5.6e-18 Score=152.98 Aligned_cols=164 Identities=20% Similarity=0.242 Sum_probs=115.1
Q ss_pred CeeEeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCc----EEE-EEEe-CCCCCCCCCeEeeCC
Q 027024 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDN----VTL-AYTH-QNESPLRQRSFAVKD 74 (229)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~----~~l-gh~r-~~~~~~~QP~~~~~~ 74 (229)
|||||.+...+.+ +.+ .....+|...+.+||||.++....+. +.+ +++- .......||++. ++
T Consensus 1 MCGI~~s~~~~~~--l~~--------~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpvv~-d~ 69 (520)
T KOG0573|consen 1 MCGIFLSVDKDLA--LNS--------ELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPVVE-DD 69 (520)
T ss_pred CceEEEeecCCcc--ccc--------cchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCceec-cc
Confidence 9999999987666 321 23577899999999999987554322 111 1111 111367899865 45
Q ss_pred cEEEEEEEEEccchhHHHHhCCCCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcCCCCc
Q 027024 75 EIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (229)
Q Consensus 75 ~~~lv~nG~I~N~~eL~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~r 154 (229)
++++.|||+|||... ++.+.+...++..+...++. ..+.+.++.++|+|||++||...++||++||++|+|
T Consensus 70 ~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRr 140 (520)
T KOG0573|consen 70 RYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRR 140 (520)
T ss_pred ceEEEecceeccCCC-------ccccchHHHHHHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEecccccce
Confidence 589999999999753 22333443346666655422 356889999999999999999999999999999999
Q ss_pred cEEEEEeCCCEEEE-EechhhhhhhccCccEEeCCC
Q 027024 155 PLYWGITADGHVAF-ADDADLLKGACGKSLASFPQG 189 (229)
Q Consensus 155 PL~y~~~~~~~~~f-aSe~~aL~~~~~~~i~~lpPG 189 (229)
+|.|...+.+..++ +|+-. ..+-|.+|||+
T Consensus 141 SLly~~~~~~f~~~~st~g~-----~~~~i~e~~~~ 171 (520)
T KOG0573|consen 141 SLLYSLDPFNFSLVLSTVGT-----SGKLIYEVPPV 171 (520)
T ss_pred eeeEEeccCceeEEeecccc-----CCccccccCch
Confidence 99999986443333 33322 22347799999
No 43
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.72 E-value=1.1e-16 Score=145.97 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=100.9
Q ss_pred CcEEEEEEeCCCC-----CCCCCeEeeCCcEEEEEEEEEccchhHHHHhC--------------------C---CCCCch
Q 027024 51 DNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--------------------L---AKSANE 102 (229)
Q Consensus 51 ~~~~lgh~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg--------------------~---~~~d~e 102 (229)
+..+|+|+|..++ ..+||+. .++|||||+|+..+++.+. + ..|||+
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~ 274 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSA 274 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHH
Confidence 3589999993222 4789984 4899999999988766541 0 256666
Q ss_pred HHHHHHHHHHhhccCC---Cchh-------------------------hhhcccccceeEEEEECCCCEEEEEEcCCCCc
Q 027024 103 VILVIEAYKALRDRAP---YPPN-------------------------HVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (229)
Q Consensus 103 ~~~~l~~~~~~g~~g~---~~~~-------------------------~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~r 154 (229)
.+ .++++-+-..|. +++. .++..++|+||+++.|. +.++++|||.|.|
T Consensus 275 ~l--d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlR 350 (413)
T cd00713 275 SL--DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLR 350 (413)
T ss_pred HH--HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCc
Confidence 64 455543211121 1111 56688999999999884 7899999999999
Q ss_pred cEEEEEeCCCEEEEEechhhhhhhccCccE---EeCCCeEEEEcCCc
Q 027024 155 PLYWGITADGHVAFADDADLLKGACGKSLA---SFPQGCFFSTAVGG 198 (229)
Q Consensus 155 PL~y~~~~~~~~~faSe~~aL~~~~~~~i~---~lpPG~~~~~~~~~ 198 (229)
||+|+.++++.++||||..++.. ..+.|. ++.||+++.++..+
T Consensus 351 Pl~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v~id~~~ 396 (413)
T cd00713 351 PARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLVDLEE 396 (413)
T ss_pred ceEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEEEEECCC
Confidence 99999986668999999999965 445565 89999999886543
No 44
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.69 E-value=3.2e-16 Score=143.80 Aligned_cols=182 Identities=18% Similarity=0.281 Sum_probs=127.1
Q ss_pred CeeEeeccc--c-CCchhhhcCCCCCCCCcchHHHHHHHhHhcCCCCccEEECCc-------------------------
Q 027024 1 MLGVFSSAI--V-SPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDN------------------------- 52 (229)
Q Consensus 1 m~gi~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~------------------------- 52 (229)
|||||++.- . ++-.+.. ..+-+-+++|.+||.|+.++..++.
T Consensus 1 MCGIF~Y~N~l~~R~R~eIi----------d~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~ 70 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEII----------DTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQN 70 (670)
T ss_pred CcceeeeeccccCCcHHHHH----------HHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcC
Confidence 999999982 2 2222221 2456678999999999988876432
Q ss_pred ----------EEEEEEe-----CCCCCCCCCeEee-CCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHH
Q 027024 53 ----------VTLAYTH-----QNESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY 110 (229)
Q Consensus 53 ----------~~lgh~r-----~~~~~~~QP~~~~-~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~ 110 (229)
++|+|+| .+...+.+|+.+. .+.++++|||.|.||++|++.| |+ +.+|+|.+ +.++
T Consensus 71 ~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEci--aKL~ 148 (670)
T KOG1268|consen 71 LNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECI--AKLY 148 (670)
T ss_pred cccceeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHH--HHHH
Confidence 7999999 3556788998743 4679999999999999999888 55 45555554 5555
Q ss_pred HHhhccCC--C----chhhhhcccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeC---------------------
Q 027024 111 KALRDRAP--Y----PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITA--------------------- 162 (229)
Q Consensus 111 ~~~g~~g~--~----~~~~~l~~L~G~fa~~i~d~~-~~~l~~aRD~~G~rPL~y~~~~--------------------- 162 (229)
...-++-+ . -.+.++++++|+|++++.... .+++.+.|+ | .||..|...
T Consensus 149 ~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGvKs~~kls~d~~~V~y~~~~~~~~ 225 (670)
T KOG1268|consen 149 KHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGVKSKTKLSVDFFPVEYGDTQEVSY 225 (670)
T ss_pred HHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeeecccccccccceeeeccccceecc
Confidence 43222211 1 135688999999999987655 589999998 3 677776421
Q ss_pred ----------------CC--EEEEEechhhhhhhccCccEEeCCCeEEEEcCCc
Q 027024 163 ----------------DG--HVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (229)
Q Consensus 163 ----------------~~--~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (229)
+. .|+|||+..++..+..+ +-.+..+.+..+.+|+
T Consensus 226 ~~~~~~d~~~~~~~~~~~~vEff~aSDasa~IEhT~r-V~flEDddia~v~dG~ 278 (670)
T KOG1268|consen 226 LKLNKTDTKASLHFLAGSPVEFFTASDASALIEHTKR-VLFLEDDDIAHVSDGE 278 (670)
T ss_pred cccCCcccccccccccCCceEEEEecCcchhheecce-eEEeccCcEEEEecCc
Confidence 11 57777777777777765 5566777776666554
No 45
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.66 E-value=1.4e-15 Score=131.68 Aligned_cols=133 Identities=16% Similarity=0.156 Sum_probs=102.5
Q ss_pred EEEEEEe----C-CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---C-C---CCCCchHHHHHHHHHHhh-ccCC-
Q 027024 53 VTLAYTH----Q-NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G-L---AKSANEVILVIEAYKALR-DRAP- 118 (229)
Q Consensus 53 ~~lgh~r----~-~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g-~---~~~d~e~~~~l~~~~~~g-~~g~- 118 (229)
++|||+| . ....+.||+.. ++++++|||.|.|+++|+..+ + . ..+|+|++ ++++.... +.++
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~--~~li~~~l~~~~~~ 157 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELA--FALLLSRLLERDPL 157 (257)
T ss_pred EEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHH--HHHHHHHHHhcCCc
Confidence 7999999 2 22478999976 489999999999999999887 3 2 56677765 45554332 1111
Q ss_pred ------Cchhhhhcccc-----cceeEEEEECCCCEEEEEEcCCCCccEEEEEeC-----------------CCEEEEEe
Q 027024 119 ------YPPNHVVGHLS-----GYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA-----------------DGHVAFAD 170 (229)
Q Consensus 119 ------~~~~~~l~~L~-----G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~-----------------~~~~~faS 170 (229)
+++.++++.|+ |.|+|++.|. ++|+++||+. .+||||...+ ++.++|||
T Consensus 158 ~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaS 234 (257)
T cd01908 158 DPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVAS 234 (257)
T ss_pred chHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEe
Confidence 35677888998 7888888875 7899999987 7999999863 36899999
Q ss_pred chhhhhhhccCccEEeCCCeEEEEcC
Q 027024 171 DADLLKGACGKSLASFPQGCFFSTAV 196 (229)
Q Consensus 171 e~~aL~~~~~~~i~~lpPG~~~~~~~ 196 (229)
|..+... .|+++|||+++.+++
T Consensus 235 E~l~~~~----~w~~v~~ge~~~i~~ 256 (257)
T cd01908 235 EPLTDDE----GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCCCC----CceEeCCCEEEEEeC
Confidence 9887643 599999999998865
No 46
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.43 E-value=1.1e-12 Score=118.75 Aligned_cols=114 Identities=22% Similarity=0.211 Sum_probs=77.8
Q ss_pred ECCcEEEEEEeC-----CCCCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---C----------------CCCc
Q 027024 49 VGDNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---A----------------KSAN 101 (229)
Q Consensus 49 ~~~~~~lgh~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~----------------~~d~ 101 (229)
+.+.++|+|+|- +.-..+||+. +++|||+|.|...+++.+ +. + .|||
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 445689999992 2236789985 799999999999998886 22 3 5666
Q ss_pred hHHHHHHHHHHhhccCC----------------------------CchhhhhcccccceeEEEEECCCCEEEEEEcCCCC
Q 027024 102 EVILVIEAYKALRDRAP----------------------------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (229)
Q Consensus 102 e~~~~l~~~~~~g~~g~----------------------------~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~ 153 (229)
+++ .++++..-..+. +....++..++|+|++++.|. +.++++|||.|.
T Consensus 267 ~~l--~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GL 342 (361)
T PF00310_consen 267 EVL--DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGL 342 (361)
T ss_dssp HHH--HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--
T ss_pred HHH--HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCC
Confidence 664 444443222220 012456788999999999875 579999999999
Q ss_pred ccEEEEEeCCCEEEEEech
Q 027024 154 VPLYWGITADGHVAFADDA 172 (229)
Q Consensus 154 rPL~y~~~~~~~~~faSe~ 172 (229)
||+.|+.++|+.+++|||.
T Consensus 343 RP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 343 RPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp S--EEEEETTCEEEEESST
T ss_pred cceEEEEECCCEEEEEeCC
Confidence 9999999977889999984
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.13 E-value=4e-10 Score=115.24 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=62.1
Q ss_pred hhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCccE--EeCCCeEEEEcC
Q 027024 124 VVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLA--SFPQGCFFSTAV 196 (229)
Q Consensus 124 ~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i~--~lpPG~~~~~~~ 196 (229)
++.-++|+||+++.|. +.+++.|||.|.|||.|+..+|+.+++|||..++.....+.++ +|.||+++.++.
T Consensus 332 lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id~ 404 (1485)
T PRK11750 332 HMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDT 404 (1485)
T ss_pred hcccCCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEeC
Confidence 4456799999999984 7999999999999999999867789999999999877777677 899999988864
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.90 E-value=1.3e-08 Score=88.95 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=67.0
Q ss_pred EEEEEEe-----CCCCCCCCCeEee--CCcEEEEEEEEEccchhHHHH-hCC-CCCCchHHHHHHHHHHhhccC---C--
Q 027024 53 VTLAYTH-----QNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQ-YGL-AKSANEVILVIEAYKALRDRA---P-- 118 (229)
Q Consensus 53 ~~lgh~r-----~~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~-lg~-~~~d~e~~~~l~~~~~~g~~g---~-- 118 (229)
..|+|+| .....+.|||... .++.+++|||.|.+++.++.. +.. ..+|+|.+++ .++....+.+ +
T Consensus 73 ~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~~~G~TDSE~~F~-lll~~l~~~~~~~~~~ 151 (271)
T PF13230_consen 73 LFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQPVGTTDSEHAFC-LLLDQLRDRGPDAPPA 151 (271)
T ss_dssp EEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT--S--HHHHHHH-HHHHTTTTT-HH--HH
T ss_pred EEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccccCCCcHHHHHHH-HHHHHHHHhCCccccc
Confidence 5889999 1224788999753 257899999999998765522 222 5678888753 2333322111 1
Q ss_pred -----Cchhhhhcccc--cceeEEEEECCCCEEEEEEcC----CCCccEE-------------EE---EeCCCEEEEEec
Q 027024 119 -----YPPNHVVGHLS--GYFAFIVYDKSTSTLFVASDQ----FGKVPLY-------------WG---ITADGHVAFADD 171 (229)
Q Consensus 119 -----~~~~~~l~~L~--G~fa~~i~d~~~~~l~~aRD~----~G~rPL~-------------y~---~~~~~~~~faSe 171 (229)
..+.++.+.+. |.+.|++.|. ..|++.|+. .-+++.+ .. ...+..++||||
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSe 229 (271)
T PF13230_consen 152 LEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASE 229 (271)
T ss_dssp HHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS
T ss_pred HHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEec
Confidence 11234455555 6788889885 689999982 1122211 00 112357788888
Q ss_pred hhhhhhhccCccEEeCCCeEEEEcCCcEE
Q 027024 172 ADLLKGACGKSLASFPQGCFFSTAVGGLR 200 (229)
Q Consensus 172 ~~aL~~~~~~~i~~lpPG~~~~~~~~~~~ 200 (229)
.=. ..+.|.++|+|+++.+..|.+.
T Consensus 230 PLt----~~e~W~~vp~g~~l~~~~G~v~ 254 (271)
T PF13230_consen 230 PLT----DDEDWEPVPPGSLLVFRDGEVV 254 (271)
T ss_dssp --------SS--EE--SSEEEE-------
T ss_pred cCC----CCCCeEEcCCCcEEEEeccccc
Confidence 533 1345999999999999877643
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.09 E-value=0.00011 Score=59.89 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=72.7
Q ss_pred cEEEEEEEEEccchhHHHHhCC----CCCCchHHHHHHHHHHhhccCCCchhhhhcccccceeEEEEECCCCEEEEEEcC
Q 027024 75 EIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (229)
Q Consensus 75 ~~~lv~nG~I~N~~eL~~~lg~----~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~~i~d~~~~~l~~aRD~ 150 (229)
+-..-.-|.|||+.-|+.-.|+ ...-+++++++.++.+.| ..++.-.+|.|+|.+=|+ +++|.+..|+
T Consensus 48 ~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~k-ng~L~l~Tds 119 (201)
T PF09147_consen 48 RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIEDK-NGELTLITDS 119 (201)
T ss_dssp TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEET-TSEEEEEE-S
T ss_pred CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEecC-CCcEEEEecC
Confidence 3445567999999888766665 233345555567888888 789999999999999775 7999999999
Q ss_pred CCCccEEEEEeCCCEEEEEechhhhhhh-------------------------ccCccEEeCCCeEEEEc
Q 027024 151 FGKVPLYWGITADGHVAFADDADLLKGA-------------------------CGKSLASFPQGCFFSTA 195 (229)
Q Consensus 151 ~G~rPL~y~~~~~~~~~faSe~~aL~~~-------------------------~~~~i~~lpPG~~~~~~ 195 (229)
-|..|.|.-.+ +..++...+|-.-.. +-+.+.++.||.+-.++
T Consensus 120 ~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l~ 187 (201)
T PF09147_consen 120 RGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVLT 187 (201)
T ss_dssp SSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEEE
T ss_pred CCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEEE
Confidence 99999998886 357776666543221 22578999999986654
No 50
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.80 E-value=0.00035 Score=60.57 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=29.2
Q ss_pred EEEEEEe----C-CCCCCCCCeEeeC--CcEEEEEEEEEccchhH
Q 027024 53 VTLAYTH----Q-NESPLRQRSFAVK--DEIFCLFEGALDNLGSL 90 (229)
Q Consensus 53 ~~lgh~r----~-~~~~~~QP~~~~~--~~~~lv~nG~I~N~~eL 90 (229)
..|+|+| . ....+.||++.+. ...+++|||.|.+++.+
T Consensus 72 ~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 72 LVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred EEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 6899999 1 2347889998652 35689999999999873
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0004 Score=63.03 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=88.6
Q ss_pred CcEEEEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEccchhHHHHh---CC---CCCCchHHHHHHHHHHh---hcc
Q 027024 51 DNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKAL---RDR 116 (229)
Q Consensus 51 ~~~~lgh~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~l~~~~~~---g~~ 116 (229)
+.++|+|+|.++ -..+||+. .++|||||.++.--++.+ +. +..|+|.+ ..++... +.+
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~--a~l~p~~~~~~sD 273 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVL--AKLLPILMRGGSD 273 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHH--HHHHHHhcccCCc
Confidence 458999999322 25677873 369999999887665555 32 55666543 2333211 100
Q ss_pred CC--Cch----------hhhhcccccceeEEEEE-CCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccCcc
Q 027024 117 AP--YPP----------NHVVGHLSGYFAFIVYD-KSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSL 183 (229)
Q Consensus 117 g~--~~~----------~~~l~~L~G~fa~~i~d-~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~~i 183 (229)
.. +.. ..-...|.|+||++.-. .......+.+|+.+.+|.+-|-. +..|.++|+..|++..++
T Consensus 274 s~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng--- 349 (371)
T COG0067 274 SASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG--- 349 (371)
T ss_pred chhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC---
Confidence 00 011 23345688999988653 22467889999999999999997 678999999999876654
Q ss_pred EEeCCCeEEEEcCCc
Q 027024 184 ASFPQGCFFSTAVGG 198 (229)
Q Consensus 184 ~~lpPG~~~~~~~~~ 198 (229)
+.|+.|+..+++.
T Consensus 350 --Lrp~Ry~~t~d~~ 362 (371)
T COG0067 350 --LRPARYWITKDGE 362 (371)
T ss_pred --CCcceEEEecCCE
Confidence 7777777765553
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.23 E-value=0.16 Score=52.49 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=49.7
Q ss_pred hhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEechhhhhhhccC--ccEEeCCCeEEEEc
Q 027024 124 VVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK--SLASFPQGCFFSTA 195 (229)
Q Consensus 124 ~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~~aL~~~~~~--~i~~lpPG~~~~~~ 195 (229)
.+.-.+|+=-+.+-|. +.+-+.=||.|.||-=|+.+.|+.++.|||.-.+.-...+ .=..|.||-++.++
T Consensus 406 ~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred cCCCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 3456778766666553 5677888999999998888878899999997554322211 11478999987774
No 53
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=66.49 E-value=1.6 Score=25.98 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=8.6
Q ss_pred CeeEeeccccC
Q 027024 1 MLGVFSSAIVS 11 (229)
Q Consensus 1 m~gi~~~~~~~ 11 (229)
|||||++..-.
T Consensus 1 M~GIFSKE~Ls 11 (38)
T PF10736_consen 1 MNGIFSKEVLS 11 (38)
T ss_pred CcccccHhhcc
Confidence 99999987433
No 54
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=51.44 E-value=14 Score=33.98 Aligned_cols=47 Identities=28% Similarity=0.279 Sum_probs=30.5
Q ss_pred hhcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCEEEEEech
Q 027024 124 VVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDA 172 (229)
Q Consensus 124 ~l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~~faSe~ 172 (229)
+..-.+|+=+.+++|. .++-+.||+.|.||-=|..++++.++++||.
T Consensus 323 l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~ 369 (371)
T COG0067 323 LMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEA 369 (371)
T ss_pred CCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEec
Confidence 4455566666666664 4566667777777776666666667777764
No 55
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=51.03 E-value=13 Score=33.94 Aligned_cols=22 Identities=5% Similarity=0.142 Sum_probs=16.9
Q ss_pred chHHHHHHHhHhcCC------CCccEEE
Q 027024 28 TTSTALVDRFLQTNS------SAVSVQV 49 (229)
Q Consensus 28 ~~~~~m~~~l~~RGp------d~~~~~~ 49 (229)
+...+++.+|.|||. |+.++.+
T Consensus 19 ~~~l~~L~~m~HRG~~d~~tGDGAGi~~ 46 (361)
T PF00310_consen 19 DDALEALKRMEHRGGVDGNTGDGAGILT 46 (361)
T ss_dssp HHHHHHHHHHGGGSTBTSSCESEEEEEE
T ss_pred HHHHHHHhcccccCCCCCCCCcceEEEE
Confidence 357789999999999 6666543
No 56
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=46.44 E-value=28 Score=23.49 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=20.1
Q ss_pred eeEEEEECCCCEEEEEEcCCCC--ccEEEE
Q 027024 132 FAFIVYDKSTSTLFVASDQFGK--VPLYWG 159 (229)
Q Consensus 132 fa~~i~d~~~~~l~~aRD~~G~--rPL~y~ 159 (229)
+.-+.+|...+++++..|. |+ |||+.-
T Consensus 33 ~vsi~~~~~~~ei~I~tD~-GR~~RPL~vV 61 (63)
T PF04566_consen 33 EVSIVYDIREKEIRINTDA-GRLCRPLFVV 61 (63)
T ss_dssp TSEEEEETTTTEEEEE-SS-CEEEEEEEEE
T ss_pred eeEEEEeccCCEEEEEccC-CcccceeEEe
Confidence 3346789889999999995 74 898763
No 57
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=34.56 E-value=94 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.7
Q ss_pred chhhhhcccccceeEEEEECCCCEE
Q 027024 120 PPNHVVGHLSGYFAFIVYDKSTSTL 144 (229)
Q Consensus 120 ~~~~~l~~L~G~fa~~i~d~~~~~l 144 (229)
.+.+++...+|.|++.+|-..+..+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 4578999999999999998766654
No 58
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=33.89 E-value=24 Score=28.48 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.5
Q ss_pred CcEEEEEEEEEccchhHHH
Q 027024 74 DEIFCLFEGALDNLGSLRQ 92 (229)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~ 92 (229)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999988754
No 59
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=33.22 E-value=25 Score=28.38 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred CcEEEEEEEEEccchhHHH
Q 027024 74 DEIFCLFEGALDNLGSLRQ 92 (229)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~ 92 (229)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999988754
No 60
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=31.38 E-value=21 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=18.2
Q ss_pred ccceeEEEEECCCCEEEEEEcCCCCccEEE
Q 027024 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLYW 158 (229)
Q Consensus 129 ~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y 158 (229)
+|.|++++++. ++++-..+ -|++|||=
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~-rGv~pL~~ 36 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDG-RGVKPLYD 36 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHHH
T ss_pred hCCceEEEEeC--CEEEEeCC-CChHHHHH
Confidence 36799999975 56665555 59999983
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=23.60 E-value=2.1e+02 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=18.6
Q ss_pred cEEeCCCeEEEEcCCcEEEEeCCCC
Q 027024 183 LASFPQGCFFSTAVGGLRSFENPKN 207 (229)
Q Consensus 183 i~~lpPG~~~~~~~~~~~~y~~~~~ 207 (229)
..--+.|+|+++..+.-..||.+..
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred eeeccCCCEEEEecCceeEEecccc
Confidence 4445679999998777778888764
No 62
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=23.00 E-value=35 Score=24.70 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=16.0
Q ss_pred EEEEcCCCCccEEEEEeCCC
Q 027024 145 FVASDQFGKVPLYWGITADG 164 (229)
Q Consensus 145 ~~aRD~~G~rPL~y~~~~~~ 164 (229)
-..++.+|++|||-|..+|+
T Consensus 27 ~~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHHhcCCeEEEEecccCC
Confidence 34567899999999998654
No 63
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=21.10 E-value=45 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=19.0
Q ss_pred EcCCCCccEEEEEeCCCEEEEEechh
Q 027024 148 SDQFGKVPLYWGITADGHVAFADDAD 173 (229)
Q Consensus 148 RD~~G~rPL~y~~~~~~~~~faSe~~ 173 (229)
.|++|+|||.|-..+.+.-+|+-+..
T Consensus 2 ~dk~gRr~llYLl~~~d~~~f~p~~i 27 (148)
T PF08144_consen 2 NDKYGRRVLLYLLSPRDPRYFSPEII 27 (148)
T ss_pred CCccCceeeeeeccCCCcccCCHHHH
Confidence 58999999999987545566654443
No 64
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=87 Score=24.22 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=22.9
Q ss_pred hcccccceeEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 027024 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (229)
Q Consensus 125 l~~L~G~fa~~i~d~~~~~l~~aRD~~G~rPL~y~~~ 161 (229)
-.+-+|.|+++.-+ .++.--+.| | +|||+...
T Consensus 86 ~dka~Gdysii~Rk--DGt~QWa~d--G-kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARK--DGTKQWAYD--G-KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEec--CchhhhhcC--C-ceeEEEee
Confidence 46778999988854 355555566 4 99998875
Done!