BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027025
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 123/232 (53%), Gaps = 49/232 (21%)
Query: 1 MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 88 LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------E 133
Query: 60 VAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFR 117
+A + YE NVLG +GPR+M + +P + E + P
Sbjct: 134 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP-------------------- 170
Query: 118 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
N E L+ + + L+NK P W++ Q + LNFHGRVT ASVKNFQ++
Sbjct: 171 --RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-- 226
Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 227 -----GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 123/232 (53%), Gaps = 49/232 (21%)
Query: 1 MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 80 LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------E 125
Query: 60 VAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFR 117
+A + YE NVLG +GPR+M + +P + E + P
Sbjct: 126 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP-------------------- 162
Query: 118 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
N E L+ + + L+NK P W++ Q + LNFHGRVT ASVKNFQ++
Sbjct: 163 --RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-- 218
Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 219 -----GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 49/232 (21%)
Query: 1 MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 80 LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------E 125
Query: 60 VAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFR 117
+A + YE NVLG +GPR+M + +P + E + P
Sbjct: 126 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP-------------------- 162
Query: 118 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
N E L+ + + L+NK P W++ + + LNFHGRVT ASVKNFQ++
Sbjct: 163 --RNEHETLLARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQIIH-- 218
Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 219 -----GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 47/230 (20%)
Query: 1 MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
+S+G ++GKLRSN LG +F V+D GQ P G ST +A+L+Q
Sbjct: 93 LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------E 136
Query: 60 VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSK 119
+A + YE NVLG RGPRRM + IP + E+ + P P
Sbjct: 137 LAAVIYETNVLGFRGPRRMTVI---IPGMSAEN---------------ERVPIRP----- 173
Query: 120 SNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 179
N S+ L + + L NK P W++ + LNF GRVT ASVKNFQ+V + +
Sbjct: 174 RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD- 232
Query: 180 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
+ I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 233 ------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 118/224 (52%), Gaps = 47/224 (20%)
Query: 1 MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
+S+G ++GKLRSN LG +F V+D GQ P G ST +A+L+Q
Sbjct: 69 LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------E 112
Query: 60 VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSK 119
+A + YE NVLG RGPRRM + IP + E+ V P P
Sbjct: 113 LAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV---------------PIRP----- 149
Query: 120 SNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 179
N S+ L + + L NK P W++ + LNF GRVT ASVKNFQ+V + +
Sbjct: 150 RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD- 208
Query: 180 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 223
+ I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 209 ------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis.
pdb|3PP7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis
Length = 498
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 88 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 147
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 99 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 156
Query: 148 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG-KVGKDLF 201
+ L+C N H T++ + L + PA +++ LQFG + G D+
Sbjct: 157 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMI 208
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|3KTX|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3KTX|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3HQN|D Chain D, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQN|A Chain A, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQO|K Chain K, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|A Chain A, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|B Chain B, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|C Chain C, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQP|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQQ|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|Q Chain Q, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|R Chain R, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|S Chain S, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|T Chain T, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|U Chain U, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|V Chain V, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|W Chain W, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|X Chain X, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3IS4|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3IS4|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3QV6|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV6|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV7|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV8|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3QV8|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3SRK|A Chain A, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
pdb|3SRK|B Chain B, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
Length = 499
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 88 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 147
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 100 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 157
Query: 148 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG-KVGKDLF 201
+ L+C N H T++ + L + PA +++ LQFG + G D+
Sbjct: 158 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMI 209
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|B Chain B, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|C Chain C, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|D Chain D, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|E Chain E, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|F Chain F, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0W|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana
Length = 539
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 88 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 147
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 140 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 197
Query: 148 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG-KVGKDLF 201
+ L+C N H T++ + L + PA +++ LQFG + G D+
Sbjct: 198 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMI 249
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 LNFHGRVTVASVKNFQLVASPENGPAGLEH 186
++F R TV S+K+ Q + ENG GL H
Sbjct: 151 VSFEDRTTV-SLKDLQCILDDENGKCGLAH 179
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 LNFHGRVTVASVKNFQLVASPENGPAGLEH 186
++F R TV S+K+ Q + ENG GL H
Sbjct: 151 VSFEDRTTV-SLKDLQCILDDENGKCGLAH 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,730,357
Number of Sequences: 62578
Number of extensions: 262993
Number of successful extensions: 506
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 15
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)