BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027026
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 100

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
           I+E  N + +  D+PG+  + ++V++++ +L I+ E+       ++ ST  E        
Sbjct: 9   IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGER------KSESSTETERFSRIERR 62

Query: 183 YGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216
           YGS+  R ALPD+ + + I A  ++GVL I IPK
Sbjct: 63  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 103

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
           I+E  N + +  D+PG+  + ++V++++ +L I+ E+       ++ ST  E        
Sbjct: 12  IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGER------KSESSTETERFSRIERR 65

Query: 183 YGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216
           YGS+  R ALPD+ + + I A  ++GVL I IPK
Sbjct: 66  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 99


>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
 pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
          Length = 161

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 116 RGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTD---GSTV 172
           +G  P +I E +   K+   +PG+++ D+ +      L I+A+++      ++    S +
Sbjct: 54  KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEI 113

Query: 173 EEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAK 222
            EEEE        Y T I LP  V+ E   A+ ++GVL + +PKA S+ K
Sbjct: 114 PEEEEI-------YRT-IKLPATVKEENASAKFENGVLSVILPKAESSIK 155


>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
          Length = 147

 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 15/140 (10%)

Query: 89  MERIMEDPFAYGVTWPSQQERVRSGYR---RGRTPWAIRETENDYKIRLDVPGMSRNDVK 145
            ER+ ++ FA  +T  +  +   +G +   +G  P +I E +   K+   +PG+++ D+ 
Sbjct: 11  FERMFKEFFATPMTGTTMIQS-STGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDII 69

Query: 146 VRVEESMLVIKAEKAQRNEANTD---GSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 202
           +      L I+A+++      ++    S + EEEE        Y T I LP  V+ E   
Sbjct: 70  LNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI-------YRT-IKLPATVKEENAS 121

Query: 203 AEVKDGVLYITIPKASSTAK 222
           A+ ++GVL + +PKA S+ K
Sbjct: 122 AKFENGVLSVILPKAESSIK 141


>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 36.2 bits (82), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 112 SGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEE-SMLVIKAEKAQRNEANTDGS 170
           + +   R  W  +ET   +  + D+PG+ + +VKV VE+ ++LV+  E+ +  E   D  
Sbjct: 39  AAFANARMDW--KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND-- 94

Query: 171 TVEEEEEWP--SNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA 217
                 +W       G +  R  L ++ + E+++A +++GVL +T+PKA
Sbjct: 95  ------KWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA 137


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 35.4 bits (80), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 13/104 (12%)

Query: 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEE-SMLVIKAEKAQRNEANTDGSTVEEEE 176
           R  W  +ET   +  + D+PG+ + +VKV VE+ ++LV+  E+ +  E   D        
Sbjct: 3   RMDW--KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND-------- 52

Query: 177 EWP--SNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218
           +W       G +  R  L ++ + E+++A +++GVL +T+PKA+
Sbjct: 53  KWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 33.1 bits (74), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEE-SMLVIKAEKAQRNEANTDGSTVEEEE 176
           R  W  +ET   +  + D+PG+ + +VKV VE+ ++LV+  E+ +  E   D        
Sbjct: 2   RMDW--KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND-------- 51

Query: 177 EWP--SNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216
           +W       G +  R  L ++ + E+++A +++GVL +T+PK
Sbjct: 52  KWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93


>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
          Length = 103

 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
           +R   + + I LDV   S  D+ V+V+E  + I     + NE   D   +  E       
Sbjct: 4   VRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEI---HGKHNERQDDHGYISRE------- 53

Query: 183 YGSYSTRIALPDNVEFEKIQAEVK-DGVLYITIPKASS 219
              +  R  LP NV+   +   +  DG+L  + PK  S
Sbjct: 54  ---FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPS 88


>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
          Length = 106

 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
           +R   + + I LDV   S  D+ V+V+E  + I     + NE   D   +  E       
Sbjct: 7   VRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEI---HGKHNERQDDHGYISRE------- 56

Query: 183 YGSYSTRIALPDNVEFEKIQAEVK-DGVLYITIPKASS 219
              +  R  LP NV+   +   +  DG+L  + PK  S
Sbjct: 57  ---FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPS 91


>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
           Adaptin From Ap3
 pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
           Adaptin From Ap3
          Length = 173

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 129 DYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEW 178
           D  + L VPG+  +D  V++EE+M ++ A  A+       G+T+  +  W
Sbjct: 31  DLSVPLKVPGLPMSDQYVKLEEAMAILFAVVAR-------GTTILAKHAW 73


>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
           Synthase Bound To Ggpp
 pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
           Synthase Bound To Ggpp
 pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
           Synthase Bound To Ggpp
 pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
           Synthase Bound To Ggpp
 pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
           Synthase Bound To Ggpp
 pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
           Synthase Bound To Ggpp
          Length = 301

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 81  TVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMS 140
           ++++  ET++RI+ +P+ Y +  P +Q  VR+   +    W ++  E+  +I ++V  M 
Sbjct: 1   SMEKTQETVQRILLEPYKYLLQLPGKQ--VRTKLSQAFNHW-LKVPEDKLQIIIEVTEML 57

Query: 141 RN 142
            N
Sbjct: 58  HN 59


>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
           Heat Shock Protein
 pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
           Heat Shock Protein
          Length = 314

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 21/115 (18%)

Query: 102 TWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQ 161
           T P + + ++  Y  G+      +    +K+  +V      ++ ++ +++ LV+   +AQ
Sbjct: 92  TQPGELDFLKDAYEVGK------DGRLHFKVYFNVKNFKAEEITIKADKNKLVV---RAQ 142

Query: 162 RNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEV-KDGVLYITIP 215
           ++ A  D +  E           S    I LP +V+   IQA +  D VL I  P
Sbjct: 143 KSVACGDAAMSE-----------SVGRSIPLPPSVDRNHIQATITTDDVLVIEAP 186


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,674,427
Number of Sequences: 62578
Number of extensions: 262259
Number of successful extensions: 402
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 15
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)